Multiple sequence alignment - TraesCS1A01G369900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G369900 chr1A 100.000 4251 0 0 1 4251 547380921 547385171 0.000000e+00 7851.0
1 TraesCS1A01G369900 chr1A 81.663 1467 191 38 1257 2651 532779794 532778334 0.000000e+00 1147.0
2 TraesCS1A01G369900 chr1A 82.132 666 85 22 2672 3317 532778123 532777472 1.340000e-149 540.0
3 TraesCS1A01G369900 chr1A 89.531 277 20 6 3972 4239 532776362 532776086 4.070000e-90 342.0
4 TraesCS1A01G369900 chr1A 84.753 223 27 7 4028 4245 532762183 532761963 2.570000e-52 217.0
5 TraesCS1A01G369900 chr1A 85.217 115 17 0 6 120 543122520 543122634 7.470000e-23 119.0
6 TraesCS1A01G369900 chr1B 90.361 2023 136 34 496 2484 622697128 622699125 0.000000e+00 2601.0
7 TraesCS1A01G369900 chr1B 80.919 2023 271 56 1373 3321 588505858 588503877 0.000000e+00 1491.0
8 TraesCS1A01G369900 chr1B 89.074 421 30 5 3809 4226 622700431 622700838 3.790000e-140 508.0
9 TraesCS1A01G369900 chr1B 84.455 431 42 12 2945 3351 622699571 622700000 6.620000e-108 401.0
10 TraesCS1A01G369900 chr1B 89.610 308 23 6 3948 4246 588498486 588498179 2.400000e-102 383.0
11 TraesCS1A01G369900 chr1B 84.571 350 37 7 2548 2885 622699214 622699558 8.810000e-87 331.0
12 TraesCS1A01G369900 chr1B 87.500 160 16 3 1 157 622627393 622627551 9.390000e-42 182.0
13 TraesCS1A01G369900 chr1B 75.391 256 27 14 1443 1684 106876311 106876078 1.630000e-14 91.6
14 TraesCS1A01G369900 chr1D 91.995 1474 80 12 665 2104 452617029 452618498 0.000000e+00 2034.0
15 TraesCS1A01G369900 chr1D 82.221 1738 227 48 1644 3321 435276945 435275230 0.000000e+00 1423.0
16 TraesCS1A01G369900 chr1D 86.667 735 71 12 2641 3354 452619506 452620234 0.000000e+00 789.0
17 TraesCS1A01G369900 chr1D 89.159 452 27 8 3809 4251 452620653 452621091 1.040000e-150 544.0
18 TraesCS1A01G369900 chr1D 83.048 525 69 12 1476 1982 435253396 435252874 3.870000e-125 459.0
19 TraesCS1A01G369900 chr1D 82.593 563 49 12 2108 2650 452618618 452619151 6.480000e-123 451.0
20 TraesCS1A01G369900 chr1D 89.085 284 22 6 3972 4246 435274487 435274204 1.130000e-90 344.0
21 TraesCS1A01G369900 chr1D 84.324 370 37 9 707 1063 435278019 435277658 4.070000e-90 342.0
22 TraesCS1A01G369900 chr1D 87.045 247 30 2 1374 1619 435277387 435277142 1.160000e-70 278.0
23 TraesCS1A01G369900 chr1D 85.714 189 23 3 3 187 452596549 452596737 3.350000e-46 196.0
24 TraesCS1A01G369900 chr1D 85.475 179 22 3 3 177 452597840 452598018 2.610000e-42 183.0
25 TraesCS1A01G369900 chr1D 84.211 190 24 4 3 187 452615945 452616133 3.380000e-41 180.0
26 TraesCS1A01G369900 chr1D 97.368 38 1 0 641 678 452616955 452616992 9.870000e-07 65.8
27 TraesCS1A01G369900 chr2D 92.694 219 15 1 4033 4251 25919670 25919453 8.870000e-82 315.0
28 TraesCS1A01G369900 chr7A 84.337 249 19 1 4003 4251 10419870 10419642 4.280000e-55 226.0
29 TraesCS1A01G369900 chr6A 93.805 113 7 0 4139 4251 407124010 407124122 2.030000e-38 171.0
30 TraesCS1A01G369900 chr2A 95.918 49 2 0 965 1013 704054986 704055034 3.520000e-11 80.5
31 TraesCS1A01G369900 chr2A 80.000 115 13 4 900 1013 704057347 704057452 4.560000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G369900 chr1A 547380921 547385171 4250 False 7851.000000 7851 100.00000 1 4251 1 chr1A.!!$F2 4250
1 TraesCS1A01G369900 chr1A 532776086 532779794 3708 True 676.333333 1147 84.44200 1257 4239 3 chr1A.!!$R2 2982
2 TraesCS1A01G369900 chr1B 588503877 588505858 1981 True 1491.000000 1491 80.91900 1373 3321 1 chr1B.!!$R3 1948
3 TraesCS1A01G369900 chr1B 622697128 622700838 3710 False 960.250000 2601 87.11525 496 4226 4 chr1B.!!$F2 3730
4 TraesCS1A01G369900 chr1D 452615945 452621091 5146 False 677.300000 2034 88.66550 3 4251 6 chr1D.!!$F2 4248
5 TraesCS1A01G369900 chr1D 435274204 435278019 3815 True 596.750000 1423 85.66875 707 4246 4 chr1D.!!$R2 3539
6 TraesCS1A01G369900 chr1D 435252874 435253396 522 True 459.000000 459 83.04800 1476 1982 1 chr1D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 332 0.100325 TGCTGTTGCGTCTGGTTTTG 59.900 50.000 0.00 0.00 43.34 2.44 F
483 559 0.106719 CCCCTCCGTATGGTTTGCAT 60.107 55.000 0.00 0.00 36.30 3.96 F
539 615 0.391661 ATCTTCCTGCGCGACAACAT 60.392 50.000 12.10 0.00 0.00 2.71 F
1876 2575 1.198637 CCTGCTGAGTTTTAGCTGCAC 59.801 52.381 1.02 0.00 41.66 4.57 F
2838 4326 1.738830 AGGTTGCAATTGCGCATGC 60.739 52.632 25.28 25.28 45.83 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 2350 0.771127 TATCTTACCAGCCCATGCCC 59.229 55.000 0.0 0.0 38.69 5.36 R
2264 3142 1.134521 TGAAACCTGTGTTCGCTCAGT 60.135 47.619 0.0 0.0 37.10 3.41 R
2491 3409 1.269517 TGTGTTTTGCTTCCGCCATTC 60.270 47.619 0.0 0.0 34.43 2.67 R
2929 4425 0.323178 CTGGGCAGAGCAGGTTGAAT 60.323 55.000 0.0 0.0 0.00 2.57 R
3882 5714 0.316841 TGCAAAGGAAAACGATGGCC 59.683 50.000 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.990257 CATGGAAGCTTTGATTTGATCGT 58.010 39.130 0.00 0.00 0.00 3.73
23 24 4.424061 TGGAAGCTTTGATTTGATCGTG 57.576 40.909 0.00 0.00 0.00 4.35
29 30 4.037690 GCTTTGATTTGATCGTGCATACC 58.962 43.478 0.00 0.00 0.00 2.73
36 37 4.664150 TTGATCGTGCATACCTGACATA 57.336 40.909 0.00 0.00 0.00 2.29
37 38 4.664150 TGATCGTGCATACCTGACATAA 57.336 40.909 0.00 0.00 0.00 1.90
38 39 4.368315 TGATCGTGCATACCTGACATAAC 58.632 43.478 0.00 0.00 0.00 1.89
42 43 1.226746 GCATACCTGACATAACGCCC 58.773 55.000 0.00 0.00 0.00 6.13
62 63 5.603596 GCCCTGATGCATTTTATCATTGAA 58.396 37.500 0.00 0.00 34.33 2.69
89 90 5.817616 ACACACGTAAAGTAGTGAATTCG 57.182 39.130 8.28 0.00 40.56 3.34
122 123 8.629158 ACTTATCTATTTTGTGCAAACAACAGA 58.371 29.630 0.00 0.00 0.00 3.41
124 125 7.935338 ATCTATTTTGTGCAAACAACAGAAG 57.065 32.000 0.00 0.00 0.00 2.85
130 135 5.132897 TGTGCAAACAACAGAAGAAAACT 57.867 34.783 0.00 0.00 0.00 2.66
136 141 7.491048 TGCAAACAACAGAAGAAAACTAATTCC 59.509 33.333 0.00 0.00 0.00 3.01
137 142 7.491048 GCAAACAACAGAAGAAAACTAATTCCA 59.509 33.333 0.00 0.00 0.00 3.53
147 152 9.841880 GAAGAAAACTAATTCCAGATGGTTTAC 57.158 33.333 0.00 0.00 36.34 2.01
166 171 8.689061 TGGTTTACTTAGATTAGTATGCTTCGA 58.311 33.333 0.00 0.00 31.09 3.71
167 172 9.694137 GGTTTACTTAGATTAGTATGCTTCGAT 57.306 33.333 0.00 0.00 31.09 3.59
248 322 2.228822 ACTAAAGGGAAATGCTGTTGCG 59.771 45.455 0.00 0.00 43.34 4.85
251 325 0.250901 AGGGAAATGCTGTTGCGTCT 60.251 50.000 0.00 0.00 43.34 4.18
256 330 1.032014 AATGCTGTTGCGTCTGGTTT 58.968 45.000 0.00 0.00 43.34 3.27
258 332 0.100325 TGCTGTTGCGTCTGGTTTTG 59.900 50.000 0.00 0.00 43.34 2.44
264 338 3.862267 TGTTGCGTCTGGTTTTGAAAATG 59.138 39.130 0.00 0.00 0.00 2.32
265 339 4.109050 GTTGCGTCTGGTTTTGAAAATGA 58.891 39.130 0.00 0.00 0.00 2.57
268 342 4.142271 TGCGTCTGGTTTTGAAAATGAAGT 60.142 37.500 0.00 0.00 0.00 3.01
294 368 3.356529 CTCCCAAGCACCATTCTACTT 57.643 47.619 0.00 0.00 0.00 2.24
300 374 2.440409 AGCACCATTCTACTTGCTTGG 58.560 47.619 0.00 0.00 42.74 3.61
303 377 3.181493 GCACCATTCTACTTGCTTGGATG 60.181 47.826 0.00 0.00 32.00 3.51
306 380 5.008415 CACCATTCTACTTGCTTGGATGATC 59.992 44.000 0.00 0.00 0.00 2.92
314 388 6.992664 ACTTGCTTGGATGATCTACTATCT 57.007 37.500 0.00 0.00 0.00 1.98
318 392 9.585099 CTTGCTTGGATGATCTACTATCTTATC 57.415 37.037 0.00 0.00 0.00 1.75
346 420 9.838339 CATTTTCTAGTGATATGTACCCTCTTT 57.162 33.333 0.00 0.00 0.00 2.52
359 433 5.766174 TGTACCCTCTTTAACCACAATGAAC 59.234 40.000 0.00 0.00 0.00 3.18
365 439 6.656693 CCTCTTTAACCACAATGAACTGAGAT 59.343 38.462 0.00 0.00 0.00 2.75
384 458 8.140677 CTGAGATCAGGATATGTTGAAAAGTC 57.859 38.462 1.70 0.00 40.20 3.01
385 459 7.050377 TGAGATCAGGATATGTTGAAAAGTCC 58.950 38.462 0.00 0.00 0.00 3.85
386 460 6.051717 AGATCAGGATATGTTGAAAAGTCCG 58.948 40.000 0.00 0.00 0.00 4.79
387 461 5.414789 TCAGGATATGTTGAAAAGTCCGA 57.585 39.130 0.00 0.00 0.00 4.55
388 462 5.989477 TCAGGATATGTTGAAAAGTCCGAT 58.011 37.500 0.00 0.00 0.00 4.18
391 466 5.104527 AGGATATGTTGAAAAGTCCGATCCA 60.105 40.000 0.00 0.00 34.09 3.41
401 476 6.661377 TGAAAAGTCCGATCCATTCCAATAAA 59.339 34.615 0.00 0.00 0.00 1.40
405 480 5.357032 AGTCCGATCCATTCCAATAAAACAC 59.643 40.000 0.00 0.00 0.00 3.32
442 518 4.963318 TTCACAGTCTCCTCACAATCTT 57.037 40.909 0.00 0.00 0.00 2.40
446 522 4.453819 CACAGTCTCCTCACAATCTTTTCC 59.546 45.833 0.00 0.00 0.00 3.13
447 523 4.006319 CAGTCTCCTCACAATCTTTTCCC 58.994 47.826 0.00 0.00 0.00 3.97
448 524 3.652869 AGTCTCCTCACAATCTTTTCCCA 59.347 43.478 0.00 0.00 0.00 4.37
451 527 3.091545 TCCTCACAATCTTTTCCCATGC 58.908 45.455 0.00 0.00 0.00 4.06
470 546 1.813513 CGATATGCATCAACCCCTCC 58.186 55.000 0.19 0.00 0.00 4.30
478 554 1.211949 CATCAACCCCTCCGTATGGTT 59.788 52.381 0.00 0.00 42.98 3.67
479 555 1.364269 TCAACCCCTCCGTATGGTTT 58.636 50.000 0.00 0.00 40.31 3.27
480 556 1.003812 TCAACCCCTCCGTATGGTTTG 59.996 52.381 0.00 0.00 40.31 2.93
481 557 0.323087 AACCCCTCCGTATGGTTTGC 60.323 55.000 0.00 0.00 39.28 3.68
482 558 1.301623 CCCCTCCGTATGGTTTGCA 59.698 57.895 0.00 0.00 36.30 4.08
483 559 0.106719 CCCCTCCGTATGGTTTGCAT 60.107 55.000 0.00 0.00 36.30 3.96
484 560 1.142060 CCCCTCCGTATGGTTTGCATA 59.858 52.381 0.00 0.00 36.30 3.14
485 561 2.224769 CCCCTCCGTATGGTTTGCATAT 60.225 50.000 0.00 0.00 36.30 1.78
486 562 2.813754 CCCTCCGTATGGTTTGCATATG 59.186 50.000 0.00 0.00 36.30 1.78
487 563 3.495983 CCCTCCGTATGGTTTGCATATGA 60.496 47.826 6.97 0.00 36.30 2.15
489 565 4.024048 CCTCCGTATGGTTTGCATATGAAC 60.024 45.833 6.97 2.73 36.30 3.18
490 566 4.776349 TCCGTATGGTTTGCATATGAACT 58.224 39.130 6.97 0.00 36.30 3.01
491 567 5.189928 TCCGTATGGTTTGCATATGAACTT 58.810 37.500 6.97 0.00 36.30 2.66
492 568 5.065859 TCCGTATGGTTTGCATATGAACTTG 59.934 40.000 6.97 0.00 36.30 3.16
493 569 4.734854 CGTATGGTTTGCATATGAACTTGC 59.265 41.667 6.97 0.00 39.33 4.01
494 570 4.804868 ATGGTTTGCATATGAACTTGCA 57.195 36.364 6.97 0.00 46.51 4.08
517 593 2.893637 CCTCTCAGAATTACACGGTGG 58.106 52.381 13.48 0.00 0.00 4.61
529 605 2.825836 CGGTGGCCATCTTCCTGC 60.826 66.667 15.59 0.00 0.00 4.85
535 611 2.125552 CCATCTTCCTGCGCGACA 60.126 61.111 12.10 6.68 0.00 4.35
538 614 1.005037 ATCTTCCTGCGCGACAACA 60.005 52.632 12.10 0.00 0.00 3.33
539 615 0.391661 ATCTTCCTGCGCGACAACAT 60.392 50.000 12.10 0.00 0.00 2.71
670 1070 5.239525 AGCTGTTCTTGGATGTTTAGTTGAC 59.760 40.000 0.00 0.00 0.00 3.18
692 1142 3.120095 CGACATACCTACGTGTCTTGTGA 60.120 47.826 0.00 0.00 41.90 3.58
771 1229 4.018409 GCCTGGCTAGGGTTTTGG 57.982 61.111 18.96 0.00 44.75 3.28
1147 1632 4.581868 AGTATTAGCTAAAAACCCGTGCA 58.418 39.130 10.85 0.00 0.00 4.57
1364 1858 5.895534 TCTAGTAAATACAACCCGGTCATCT 59.104 40.000 0.00 0.00 0.00 2.90
1377 1871 4.023707 CCCGGTCATCTATTGATTTCTTGC 60.024 45.833 0.00 0.00 36.54 4.01
1432 1933 6.878317 TCAACTAGGTCATAGTCTTCCAATG 58.122 40.000 0.00 0.00 44.26 2.82
1452 1961 4.661993 TGCATTGTCGCTTTAGTAACAG 57.338 40.909 0.00 0.00 0.00 3.16
1654 2350 6.407202 ACTAGCTAACTGGTATTCTTGGTTG 58.593 40.000 0.00 0.00 35.56 3.77
1843 2541 4.331108 TGCAGGTATGTGTGAAAGCAATA 58.669 39.130 0.00 0.00 0.00 1.90
1847 2545 7.936301 TGCAGGTATGTGTGAAAGCAATATATA 59.064 33.333 0.00 0.00 0.00 0.86
1876 2575 1.198637 CCTGCTGAGTTTTAGCTGCAC 59.801 52.381 1.02 0.00 41.66 4.57
1885 2584 5.108385 AGTTTTAGCTGCACATTGTGTAC 57.892 39.130 17.64 8.55 35.75 2.90
1895 2594 3.001838 GCACATTGTGTACAACTGAACGA 59.998 43.478 17.64 0.00 38.86 3.85
1971 2679 3.700538 TGATTGCATTAGGCTTTCACCT 58.299 40.909 0.00 0.00 45.15 4.00
2034 2782 2.360165 CTCTTTGCATCATAACTGGCCC 59.640 50.000 0.00 0.00 0.00 5.80
2040 2790 4.348486 TGCATCATAACTGGCCCTTTTTA 58.652 39.130 0.00 0.00 0.00 1.52
2045 2795 6.293004 TCATAACTGGCCCTTTTTAAATGG 57.707 37.500 0.00 2.98 0.00 3.16
2174 3041 7.148289 GCCATAATACATCATGGTCAGAATCTG 60.148 40.741 3.38 3.38 43.14 2.90
2212 3080 5.584649 TCGTTTCCATGCTACCAAAGAATAG 59.415 40.000 0.00 0.00 0.00 1.73
2235 3103 4.570772 GTGTAGTGATGTGTGACAGTTTGT 59.429 41.667 0.00 0.00 0.00 2.83
2313 3191 7.127032 ACCCTTTCTTGAAGTGATATGAGAGAT 59.873 37.037 0.00 0.00 33.29 2.75
2438 3323 7.808381 GGTTAAAAATGTAGCTTGAAGAGGTTC 59.192 37.037 0.00 0.00 37.30 3.62
2446 3333 3.009916 AGCTTGAAGAGGTTCCACATCAT 59.990 43.478 0.00 0.00 30.12 2.45
2456 3344 5.831103 AGGTTCCACATCATCTAAATGGTT 58.169 37.500 0.00 0.00 33.42 3.67
2459 3347 6.404734 GGTTCCACATCATCTAAATGGTTCAC 60.405 42.308 0.00 0.00 33.42 3.18
2484 3372 9.096921 ACATTCAAATGTCAGATGGCTTTTCCA 62.097 37.037 2.53 0.00 46.10 3.53
2563 3487 7.712264 TTCAAACTGATGCAAACCTTAATTG 57.288 32.000 0.00 0.00 0.00 2.32
2596 3520 6.762661 GCTGGCCATATTTTGTTAATTCACAT 59.237 34.615 5.51 0.00 0.00 3.21
2736 4221 7.922278 CCCATTTTATTGTGGTATTGATCAGTG 59.078 37.037 0.13 0.00 33.55 3.66
2765 4250 4.673968 TCTAGTATCCCAGTGTGACAGTT 58.326 43.478 0.00 0.00 0.00 3.16
2775 4260 6.045318 CCCAGTGTGACAGTTTCTATCTATG 58.955 44.000 0.00 0.00 0.00 2.23
2780 4265 5.979517 TGTGACAGTTTCTATCTATGATGCG 59.020 40.000 0.00 0.00 0.00 4.73
2783 4268 6.264518 TGACAGTTTCTATCTATGATGCGGTA 59.735 38.462 0.00 0.00 0.00 4.02
2811 4297 8.692110 TGCTCTGCAATAAAAATTGTGAATAG 57.308 30.769 0.00 0.00 34.76 1.73
2838 4326 1.738830 AGGTTGCAATTGCGCATGC 60.739 52.632 25.28 25.28 45.83 4.06
2901 4397 9.632807 GCTTGTGGTAAAATGTATAAATCAACA 57.367 29.630 0.00 0.00 0.00 3.33
2963 4459 5.332743 TCTGCCCAGGTTTTCTATTTGAAT 58.667 37.500 0.00 0.00 34.24 2.57
2978 4474 9.866655 TTCTATTTGAATCCCTATGCTATGTTT 57.133 29.630 0.00 0.00 0.00 2.83
2981 4477 7.716799 TTTGAATCCCTATGCTATGTTTGTT 57.283 32.000 0.00 0.00 0.00 2.83
3093 4592 1.001760 AGGTAGTCGCCCTCCATGT 59.998 57.895 0.00 0.00 0.00 3.21
3113 4612 6.265196 CCATGTGTTGTATTTGGCCATACTAT 59.735 38.462 6.09 0.43 31.73 2.12
3148 4647 9.153721 CATTTGCATGTTTGTCCACTTATTTAT 57.846 29.630 0.00 0.00 0.00 1.40
3181 4685 9.852481 GCTGTATCGACGAGTATTCTAATATAG 57.148 37.037 3.01 0.00 0.00 1.31
3241 4756 0.188342 GCCTCCCTCCTGAGAGAGAT 59.812 60.000 7.21 0.00 43.39 2.75
3362 4918 6.265577 GTTGTGTTTGAACATCTTTAGCACT 58.734 36.000 0.00 0.00 41.59 4.40
3366 4922 4.488126 TTGAACATCTTTAGCACTGTGC 57.512 40.909 24.59 24.59 45.46 4.57
3375 4931 3.034030 GCACTGTGCACCCTGTTC 58.966 61.111 26.70 1.54 44.26 3.18
3378 4934 0.664761 CACTGTGCACCCTGTTCTTG 59.335 55.000 15.69 0.00 0.00 3.02
3380 4936 0.820891 CTGTGCACCCTGTTCTTGCT 60.821 55.000 15.69 0.00 37.16 3.91
3385 4941 1.537202 GCACCCTGTTCTTGCTTGTAG 59.463 52.381 0.00 0.00 33.26 2.74
3387 4943 2.808543 CACCCTGTTCTTGCTTGTAGTC 59.191 50.000 0.00 0.00 0.00 2.59
3389 4945 2.039084 CCCTGTTCTTGCTTGTAGTCCT 59.961 50.000 0.00 0.00 0.00 3.85
3393 4949 3.898123 TGTTCTTGCTTGTAGTCCTCTCT 59.102 43.478 0.00 0.00 0.00 3.10
3394 4950 5.077564 TGTTCTTGCTTGTAGTCCTCTCTA 58.922 41.667 0.00 0.00 0.00 2.43
3395 4951 5.717178 TGTTCTTGCTTGTAGTCCTCTCTAT 59.283 40.000 0.00 0.00 0.00 1.98
3399 4955 5.381184 TGCTTGTAGTCCTCTCTATCTCT 57.619 43.478 0.00 0.00 0.00 3.10
3407 4963 6.327386 AGTCCTCTCTATCTCTATGGATCC 57.673 45.833 4.20 4.20 0.00 3.36
3411 4967 7.773690 GTCCTCTCTATCTCTATGGATCCTTAC 59.226 44.444 14.23 0.00 0.00 2.34
3414 4970 5.756918 TCTATCTCTATGGATCCTTACCCG 58.243 45.833 14.23 0.00 0.00 5.28
3416 4972 4.194678 TCTCTATGGATCCTTACCCGTT 57.805 45.455 14.23 0.00 0.00 4.44
3417 4973 4.150359 TCTCTATGGATCCTTACCCGTTC 58.850 47.826 14.23 0.00 0.00 3.95
3418 4974 3.895656 CTCTATGGATCCTTACCCGTTCA 59.104 47.826 14.23 0.00 0.00 3.18
3419 4975 3.895656 TCTATGGATCCTTACCCGTTCAG 59.104 47.826 14.23 0.00 0.00 3.02
3421 4977 2.759355 TGGATCCTTACCCGTTCAGAT 58.241 47.619 14.23 0.00 0.00 2.90
3422 4978 3.112263 TGGATCCTTACCCGTTCAGATT 58.888 45.455 14.23 0.00 0.00 2.40
3423 4979 3.118408 TGGATCCTTACCCGTTCAGATTG 60.118 47.826 14.23 0.00 0.00 2.67
3424 4980 3.467803 GATCCTTACCCGTTCAGATTGG 58.532 50.000 0.00 0.00 0.00 3.16
3425 4981 2.262637 TCCTTACCCGTTCAGATTGGT 58.737 47.619 0.00 0.00 34.85 3.67
3426 4982 2.640826 TCCTTACCCGTTCAGATTGGTT 59.359 45.455 0.00 0.00 32.27 3.67
3427 4983 3.073356 TCCTTACCCGTTCAGATTGGTTT 59.927 43.478 0.00 0.00 32.27 3.27
3428 4984 3.190535 CCTTACCCGTTCAGATTGGTTTG 59.809 47.826 0.00 0.00 32.27 2.93
3429 4985 1.616159 ACCCGTTCAGATTGGTTTGG 58.384 50.000 0.00 0.00 0.00 3.28
3430 4986 1.133606 ACCCGTTCAGATTGGTTTGGT 60.134 47.619 0.00 0.00 0.00 3.67
3431 4987 1.960689 CCCGTTCAGATTGGTTTGGTT 59.039 47.619 0.00 0.00 0.00 3.67
3432 4988 3.150767 CCCGTTCAGATTGGTTTGGTTA 58.849 45.455 0.00 0.00 0.00 2.85
3433 4989 3.761752 CCCGTTCAGATTGGTTTGGTTAT 59.238 43.478 0.00 0.00 0.00 1.89
3434 4990 4.142469 CCCGTTCAGATTGGTTTGGTTATC 60.142 45.833 0.00 0.00 0.00 1.75
3435 4991 4.142469 CCGTTCAGATTGGTTTGGTTATCC 60.142 45.833 0.00 0.00 0.00 2.59
3436 4992 4.142469 CGTTCAGATTGGTTTGGTTATCCC 60.142 45.833 0.00 0.00 0.00 3.85
3437 4993 3.616219 TCAGATTGGTTTGGTTATCCCG 58.384 45.455 0.00 0.00 35.15 5.14
3438 4994 2.099098 CAGATTGGTTTGGTTATCCCGC 59.901 50.000 0.00 0.00 35.15 6.13
3439 4995 2.025321 AGATTGGTTTGGTTATCCCGCT 60.025 45.455 0.00 0.00 35.15 5.52
3440 4996 3.201266 AGATTGGTTTGGTTATCCCGCTA 59.799 43.478 0.00 0.00 35.15 4.26
3441 4997 2.406596 TGGTTTGGTTATCCCGCTAC 57.593 50.000 0.00 0.00 35.15 3.58
3442 4998 1.065272 TGGTTTGGTTATCCCGCTACC 60.065 52.381 0.00 0.00 35.15 3.18
3443 4999 1.065272 GGTTTGGTTATCCCGCTACCA 60.065 52.381 0.00 0.00 40.06 3.25
3447 5003 1.968493 TGGTTATCCCGCTACCATCTC 59.032 52.381 0.00 0.00 37.04 2.75
3454 5010 2.496871 TCCCGCTACCATCTCGTTTAAA 59.503 45.455 0.00 0.00 0.00 1.52
3457 5013 5.051816 CCCGCTACCATCTCGTTTAAATTA 58.948 41.667 0.00 0.00 0.00 1.40
3464 5020 5.007332 ACCATCTCGTTTAAATTATGGACGC 59.993 40.000 19.52 0.00 37.80 5.19
3465 5021 5.007234 CCATCTCGTTTAAATTATGGACGCA 59.993 40.000 12.29 0.00 36.76 5.24
3466 5022 5.712217 TCTCGTTTAAATTATGGACGCAG 57.288 39.130 0.00 0.00 34.04 5.18
3467 5023 4.569162 TCTCGTTTAAATTATGGACGCAGG 59.431 41.667 0.00 0.00 34.04 4.85
3472 5028 0.255890 AATTATGGACGCAGGTGGCT 59.744 50.000 0.00 0.00 41.67 4.75
3478 5034 0.107654 GGACGCAGGTGGCTATCTTT 60.108 55.000 0.00 0.00 41.67 2.52
3479 5035 1.679032 GGACGCAGGTGGCTATCTTTT 60.679 52.381 0.00 0.00 41.67 2.27
3485 5041 3.314635 GCAGGTGGCTATCTTTTCTCATG 59.685 47.826 0.00 0.00 40.25 3.07
3488 5044 5.826737 CAGGTGGCTATCTTTTCTCATGAAT 59.173 40.000 0.00 0.00 31.56 2.57
3492 5048 5.136105 GGCTATCTTTTCTCATGAATGGGT 58.864 41.667 0.00 0.00 31.56 4.51
3493 5049 6.126507 TGGCTATCTTTTCTCATGAATGGGTA 60.127 38.462 0.00 0.00 31.56 3.69
3500 5056 9.527157 TCTTTTCTCATGAATGGGTAAATGTAA 57.473 29.630 0.00 0.00 29.17 2.41
3538 5097 1.795768 TCTTGCCATCTGTGAACGAC 58.204 50.000 0.00 0.00 0.00 4.34
3557 5116 2.674852 GACTGAATCGAATTGCAGCAGA 59.325 45.455 0.00 0.00 31.74 4.26
3564 5123 2.160219 TCGAATTGCAGCAGAACATGTC 59.840 45.455 0.00 0.00 0.00 3.06
3572 5131 1.955762 GCAGAACATGTCGAAACTGC 58.044 50.000 18.38 18.38 42.44 4.40
3576 5135 4.378356 GCAGAACATGTCGAAACTGCAATA 60.378 41.667 23.50 0.00 46.30 1.90
3586 5146 7.077605 TGTCGAAACTGCAATATTTTTGAGAG 58.922 34.615 0.00 0.00 0.00 3.20
3588 5148 7.591426 GTCGAAACTGCAATATTTTTGAGAGTT 59.409 33.333 0.00 0.00 0.00 3.01
3589 5149 7.803189 TCGAAACTGCAATATTTTTGAGAGTTC 59.197 33.333 0.00 0.00 0.00 3.01
3598 5348 7.687941 ATATTTTTGAGAGTTCATGTCGGTT 57.312 32.000 0.00 0.00 32.27 4.44
3618 5391 4.209911 GGTTTCTGAAGCAACAGCAAATTC 59.790 41.667 6.58 0.00 37.75 2.17
3623 5396 2.642139 AGCAACAGCAAATTCGATGG 57.358 45.000 0.00 0.00 0.00 3.51
3635 5408 4.627611 AATTCGATGGATCTGTTTGCTG 57.372 40.909 0.00 0.00 0.00 4.41
3638 5411 3.264947 TCGATGGATCTGTTTGCTGAAG 58.735 45.455 0.00 0.00 0.00 3.02
3640 5413 3.438087 CGATGGATCTGTTTGCTGAAGTT 59.562 43.478 0.00 0.00 0.00 2.66
3643 5416 5.596836 TGGATCTGTTTGCTGAAGTTTTT 57.403 34.783 0.00 0.00 0.00 1.94
3649 5437 5.182950 TCTGTTTGCTGAAGTTTTTGACAGA 59.817 36.000 0.00 0.00 38.76 3.41
3650 5438 5.401550 TGTTTGCTGAAGTTTTTGACAGAG 58.598 37.500 0.00 0.00 32.90 3.35
3651 5439 5.048083 TGTTTGCTGAAGTTTTTGACAGAGT 60.048 36.000 0.00 0.00 32.90 3.24
3652 5440 4.882671 TGCTGAAGTTTTTGACAGAGTC 57.117 40.909 0.00 0.00 32.90 3.36
3653 5441 4.517285 TGCTGAAGTTTTTGACAGAGTCT 58.483 39.130 0.00 0.00 33.15 3.24
3654 5442 4.333649 TGCTGAAGTTTTTGACAGAGTCTG 59.666 41.667 18.83 18.83 37.52 3.51
3655 5443 4.787882 GCTGAAGTTTTTGACAGAGTCTGC 60.788 45.833 20.31 13.02 34.37 4.26
3656 5444 3.627577 TGAAGTTTTTGACAGAGTCTGCC 59.372 43.478 20.31 10.03 34.37 4.85
3657 5445 3.281727 AGTTTTTGACAGAGTCTGCCA 57.718 42.857 20.31 12.95 34.37 4.92
3658 5446 3.825328 AGTTTTTGACAGAGTCTGCCAT 58.175 40.909 20.31 0.12 34.37 4.40
3659 5447 4.973168 AGTTTTTGACAGAGTCTGCCATA 58.027 39.130 20.31 7.78 34.37 2.74
3660 5448 4.757149 AGTTTTTGACAGAGTCTGCCATAC 59.243 41.667 20.31 12.94 34.37 2.39
3661 5449 4.350368 TTTTGACAGAGTCTGCCATACA 57.650 40.909 20.31 9.70 34.37 2.29
3662 5450 4.558226 TTTGACAGAGTCTGCCATACAT 57.442 40.909 20.31 0.00 34.37 2.29
3663 5451 5.675684 TTTGACAGAGTCTGCCATACATA 57.324 39.130 20.31 0.00 34.37 2.29
3664 5452 5.876651 TTGACAGAGTCTGCCATACATAT 57.123 39.130 20.31 0.00 34.37 1.78
3665 5453 6.976934 TTGACAGAGTCTGCCATACATATA 57.023 37.500 20.31 0.00 34.37 0.86
3666 5454 6.332735 TGACAGAGTCTGCCATACATATAC 57.667 41.667 20.31 0.00 34.37 1.47
3667 5455 5.048713 TGACAGAGTCTGCCATACATATACG 60.049 44.000 20.31 0.00 34.37 3.06
3668 5456 4.827835 ACAGAGTCTGCCATACATATACGT 59.172 41.667 20.31 0.00 34.37 3.57
3669 5457 5.157067 CAGAGTCTGCCATACATATACGTG 58.843 45.833 7.33 0.00 0.00 4.49
3670 5458 5.048713 CAGAGTCTGCCATACATATACGTGA 60.049 44.000 7.33 0.00 0.00 4.35
3671 5459 5.535030 AGAGTCTGCCATACATATACGTGAA 59.465 40.000 0.00 0.00 0.00 3.18
3672 5460 5.529791 AGTCTGCCATACATATACGTGAAC 58.470 41.667 0.00 0.00 0.00 3.18
3673 5461 5.068591 AGTCTGCCATACATATACGTGAACA 59.931 40.000 0.00 0.00 0.00 3.18
3674 5462 5.175126 GTCTGCCATACATATACGTGAACAC 59.825 44.000 0.00 0.00 0.00 3.32
3675 5463 5.068591 TCTGCCATACATATACGTGAACACT 59.931 40.000 0.00 0.00 0.00 3.55
3676 5464 5.047188 TGCCATACATATACGTGAACACTG 58.953 41.667 0.00 0.39 0.00 3.66
3677 5465 4.084537 GCCATACATATACGTGAACACTGC 60.085 45.833 0.00 0.00 0.00 4.40
3678 5466 5.047188 CCATACATATACGTGAACACTGCA 58.953 41.667 0.00 0.00 0.00 4.41
3679 5467 5.522097 CCATACATATACGTGAACACTGCAA 59.478 40.000 0.00 0.00 0.00 4.08
3680 5468 4.921470 ACATATACGTGAACACTGCAAC 57.079 40.909 0.00 0.00 0.00 4.17
3681 5469 4.566004 ACATATACGTGAACACTGCAACT 58.434 39.130 0.00 0.00 0.00 3.16
3698 5517 6.491403 ACTGCAACTAGTCTGAATCCAATTTT 59.509 34.615 0.00 0.00 0.00 1.82
3702 5521 7.752686 GCAACTAGTCTGAATCCAATTTTCTTC 59.247 37.037 0.00 0.00 0.00 2.87
3715 5534 6.375455 TCCAATTTTCTTCTGCCTTCTGTATC 59.625 38.462 0.00 0.00 0.00 2.24
3722 5541 3.646534 TCTGCCTTCTGTATCCTGATCA 58.353 45.455 0.00 0.00 0.00 2.92
3741 5560 3.609853 TCATACCAAATGTCACTCCAGC 58.390 45.455 0.00 0.00 0.00 4.85
3743 5562 0.478072 ACCAAATGTCACTCCAGCCA 59.522 50.000 0.00 0.00 0.00 4.75
3744 5563 1.171308 CCAAATGTCACTCCAGCCAG 58.829 55.000 0.00 0.00 0.00 4.85
3745 5564 1.546323 CCAAATGTCACTCCAGCCAGT 60.546 52.381 0.00 0.00 0.00 4.00
3747 5566 3.411446 CAAATGTCACTCCAGCCAGTAA 58.589 45.455 0.00 0.00 0.00 2.24
3749 5568 0.317160 TGTCACTCCAGCCAGTAACG 59.683 55.000 0.00 0.00 0.00 3.18
3750 5569 0.601558 GTCACTCCAGCCAGTAACGA 59.398 55.000 0.00 0.00 0.00 3.85
3751 5570 1.000506 GTCACTCCAGCCAGTAACGAA 59.999 52.381 0.00 0.00 0.00 3.85
3752 5571 1.689813 TCACTCCAGCCAGTAACGAAA 59.310 47.619 0.00 0.00 0.00 3.46
3753 5572 2.301870 TCACTCCAGCCAGTAACGAAAT 59.698 45.455 0.00 0.00 0.00 2.17
3754 5573 2.673368 CACTCCAGCCAGTAACGAAATC 59.327 50.000 0.00 0.00 0.00 2.17
3755 5574 2.301870 ACTCCAGCCAGTAACGAAATCA 59.698 45.455 0.00 0.00 0.00 2.57
3756 5575 2.673368 CTCCAGCCAGTAACGAAATCAC 59.327 50.000 0.00 0.00 0.00 3.06
3757 5576 1.737793 CCAGCCAGTAACGAAATCACC 59.262 52.381 0.00 0.00 0.00 4.02
3758 5577 1.393539 CAGCCAGTAACGAAATCACCG 59.606 52.381 0.00 0.00 0.00 4.94
3760 5579 1.127951 GCCAGTAACGAAATCACCGTG 59.872 52.381 0.00 0.00 40.44 4.94
3761 5580 1.730064 CCAGTAACGAAATCACCGTGG 59.270 52.381 0.00 0.00 40.44 4.94
3762 5581 1.127951 CAGTAACGAAATCACCGTGGC 59.872 52.381 0.00 0.00 40.44 5.01
3764 5583 1.735571 GTAACGAAATCACCGTGGCAT 59.264 47.619 0.00 0.00 40.44 4.40
3765 5584 2.102070 AACGAAATCACCGTGGCATA 57.898 45.000 0.00 0.00 40.44 3.14
3766 5585 1.365699 ACGAAATCACCGTGGCATAC 58.634 50.000 0.00 0.00 38.97 2.39
3778 5597 1.523934 GTGGCATACGGTGTAATACGC 59.476 52.381 0.00 0.00 0.00 4.42
3779 5598 0.780002 GGCATACGGTGTAATACGCG 59.220 55.000 3.53 3.53 0.00 6.01
3780 5599 1.480205 GCATACGGTGTAATACGCGT 58.520 50.000 19.17 19.17 38.85 6.01
3781 5600 2.604373 GGCATACGGTGTAATACGCGTA 60.604 50.000 22.94 22.94 40.28 4.42
3782 5601 3.042189 GCATACGGTGTAATACGCGTAA 58.958 45.455 24.55 4.52 39.81 3.18
3783 5602 3.118482 GCATACGGTGTAATACGCGTAAG 59.882 47.826 24.55 10.75 39.81 2.34
3800 5619 4.444536 CGTAAGCAGTCCTAGAGAGTAGT 58.555 47.826 0.00 0.00 0.00 2.73
3801 5620 5.599732 CGTAAGCAGTCCTAGAGAGTAGTA 58.400 45.833 0.00 0.00 0.00 1.82
3802 5621 6.225318 CGTAAGCAGTCCTAGAGAGTAGTAT 58.775 44.000 0.00 0.00 0.00 2.12
3803 5622 7.377398 CGTAAGCAGTCCTAGAGAGTAGTATA 58.623 42.308 0.00 0.00 0.00 1.47
3804 5623 7.329226 CGTAAGCAGTCCTAGAGAGTAGTATAC 59.671 44.444 0.00 0.00 43.47 1.47
3875 5707 4.927782 GGTGGGCCGCGATGCATA 62.928 66.667 8.23 0.00 0.00 3.14
3879 5711 2.894879 GGCCGCGATGCATACACA 60.895 61.111 8.23 0.00 0.00 3.72
3882 5714 1.637934 CCGCGATGCATACACACAG 59.362 57.895 8.23 0.00 0.00 3.66
3892 5724 2.083774 CATACACACAGGCCATCGTTT 58.916 47.619 5.01 0.00 0.00 3.60
3894 5726 0.951558 ACACACAGGCCATCGTTTTC 59.048 50.000 5.01 0.00 0.00 2.29
3901 5733 0.316841 GGCCATCGTTTTCCTTTGCA 59.683 50.000 0.00 0.00 0.00 4.08
3903 5735 1.701704 CCATCGTTTTCCTTTGCAGC 58.298 50.000 0.00 0.00 0.00 5.25
3906 5738 2.016165 CGTTTTCCTTTGCAGCGGC 61.016 57.895 0.31 0.31 41.68 6.53
3976 6186 2.271607 GATGCGTCTCGTCAGCCTCA 62.272 60.000 0.00 0.00 0.00 3.86
4022 6235 2.431942 GTCGACGACGGCAACCAT 60.432 61.111 12.94 0.00 44.03 3.55
4134 6353 4.636435 CGCAACCCCGTCCACCTT 62.636 66.667 0.00 0.00 0.00 3.50
4137 6356 1.378762 CAACCCCGTCCACCTTGAT 59.621 57.895 0.00 0.00 0.00 2.57
4140 6359 0.914417 ACCCCGTCCACCTTGATGAT 60.914 55.000 0.00 0.00 0.00 2.45
4247 6466 2.357517 CCACTTCGTGCGCTCCTT 60.358 61.111 9.73 0.00 31.34 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.796830 CACGATCAAATCAAAGCTTCCATG 59.203 41.667 0.00 0.00 0.00 3.66
1 2 4.676196 GCACGATCAAATCAAAGCTTCCAT 60.676 41.667 0.00 0.00 0.00 3.41
2 3 3.366273 GCACGATCAAATCAAAGCTTCCA 60.366 43.478 0.00 0.00 0.00 3.53
3 4 3.174375 GCACGATCAAATCAAAGCTTCC 58.826 45.455 0.00 0.00 0.00 3.46
4 5 3.825308 TGCACGATCAAATCAAAGCTTC 58.175 40.909 0.00 0.00 0.00 3.86
6 7 4.201950 GGTATGCACGATCAAATCAAAGCT 60.202 41.667 0.00 0.00 0.00 3.74
7 8 4.037690 GGTATGCACGATCAAATCAAAGC 58.962 43.478 0.00 0.00 0.00 3.51
21 22 1.597663 GGCGTTATGTCAGGTATGCAC 59.402 52.381 0.00 0.00 0.00 4.57
22 23 1.474320 GGGCGTTATGTCAGGTATGCA 60.474 52.381 0.00 0.00 0.00 3.96
23 24 1.202651 AGGGCGTTATGTCAGGTATGC 60.203 52.381 0.00 0.00 0.00 3.14
29 30 0.940126 GCATCAGGGCGTTATGTCAG 59.060 55.000 3.61 0.00 0.00 3.51
36 37 3.023119 TGATAAAATGCATCAGGGCGTT 58.977 40.909 0.00 0.00 44.50 4.84
37 38 2.653726 TGATAAAATGCATCAGGGCGT 58.346 42.857 0.00 0.00 36.28 5.68
38 39 3.928727 ATGATAAAATGCATCAGGGCG 57.071 42.857 0.00 0.00 35.93 6.13
70 71 4.433805 GGTGCGAATTCACTACTTTACGTG 60.434 45.833 6.22 0.00 37.16 4.49
89 90 5.123820 TGCACAAAATAGATAAGTGAGGTGC 59.876 40.000 0.00 0.00 45.78 5.01
122 123 9.588096 AGTAAACCATCTGGAATTAGTTTTCTT 57.412 29.630 2.55 0.00 38.94 2.52
136 141 9.988815 AGCATACTAATCTAAGTAAACCATCTG 57.011 33.333 0.00 0.00 35.65 2.90
147 152 9.562583 GGTTCTATCGAAGCATACTAATCTAAG 57.437 37.037 4.44 0.00 44.81 2.18
164 169 5.327091 CAAAGCATGACAAAGGTTCTATCG 58.673 41.667 0.00 0.00 0.00 2.92
166 171 4.082026 GCCAAAGCATGACAAAGGTTCTAT 60.082 41.667 0.00 0.00 39.53 1.98
167 172 3.255642 GCCAAAGCATGACAAAGGTTCTA 59.744 43.478 0.00 0.00 39.53 2.10
168 173 2.036346 GCCAAAGCATGACAAAGGTTCT 59.964 45.455 0.00 0.00 39.53 3.01
169 174 2.224018 TGCCAAAGCATGACAAAGGTTC 60.224 45.455 0.00 0.00 46.52 3.62
171 176 1.412079 TGCCAAAGCATGACAAAGGT 58.588 45.000 0.00 0.00 46.52 3.50
233 307 0.109597 CAGACGCAACAGCATTTCCC 60.110 55.000 0.00 0.00 0.00 3.97
234 308 0.109597 CCAGACGCAACAGCATTTCC 60.110 55.000 0.00 0.00 0.00 3.13
236 310 1.032014 AACCAGACGCAACAGCATTT 58.968 45.000 0.00 0.00 0.00 2.32
243 317 4.109050 TCATTTTCAAAACCAGACGCAAC 58.891 39.130 0.00 0.00 0.00 4.17
248 322 6.473455 CACTCACTTCATTTTCAAAACCAGAC 59.527 38.462 0.00 0.00 0.00 3.51
251 325 5.105392 AGCACTCACTTCATTTTCAAAACCA 60.105 36.000 0.00 0.00 0.00 3.67
256 330 3.569701 GGGAGCACTCACTTCATTTTCAA 59.430 43.478 0.00 0.00 0.00 2.69
258 332 3.149196 TGGGAGCACTCACTTCATTTTC 58.851 45.455 0.95 0.00 33.23 2.29
293 367 9.093458 TGATAAGATAGTAGATCATCCAAGCAA 57.907 33.333 0.00 0.00 0.00 3.91
294 368 8.526978 GTGATAAGATAGTAGATCATCCAAGCA 58.473 37.037 0.00 0.00 31.35 3.91
318 392 8.424918 AGAGGGTACATATCACTAGAAAATGTG 58.575 37.037 0.00 0.00 36.04 3.21
328 402 6.442564 TGTGGTTAAAGAGGGTACATATCACT 59.557 38.462 0.00 0.00 0.00 3.41
336 410 6.002082 AGTTCATTGTGGTTAAAGAGGGTAC 58.998 40.000 0.00 0.00 0.00 3.34
346 420 5.248248 TCCTGATCTCAGTTCATTGTGGTTA 59.752 40.000 6.46 0.00 42.27 2.85
359 433 7.226325 GGACTTTTCAACATATCCTGATCTCAG 59.774 40.741 0.00 0.00 43.40 3.35
365 439 5.414789 TCGGACTTTTCAACATATCCTGA 57.585 39.130 0.00 0.00 0.00 3.86
369 443 6.867662 ATGGATCGGACTTTTCAACATATC 57.132 37.500 0.00 0.00 0.00 1.63
373 447 3.756434 GGAATGGATCGGACTTTTCAACA 59.244 43.478 0.00 0.00 0.00 3.33
374 448 3.756434 TGGAATGGATCGGACTTTTCAAC 59.244 43.478 0.00 0.00 0.00 3.18
375 449 4.027674 TGGAATGGATCGGACTTTTCAA 57.972 40.909 0.00 0.00 0.00 2.69
377 451 6.693315 TTATTGGAATGGATCGGACTTTTC 57.307 37.500 0.00 0.00 0.00 2.29
378 452 7.039363 TGTTTTATTGGAATGGATCGGACTTTT 60.039 33.333 0.00 0.00 0.00 2.27
380 454 5.949354 TGTTTTATTGGAATGGATCGGACTT 59.051 36.000 0.00 0.00 0.00 3.01
382 456 5.449999 GGTGTTTTATTGGAATGGATCGGAC 60.450 44.000 0.00 0.00 0.00 4.79
383 457 4.642885 GGTGTTTTATTGGAATGGATCGGA 59.357 41.667 0.00 0.00 0.00 4.55
384 458 4.400884 TGGTGTTTTATTGGAATGGATCGG 59.599 41.667 0.00 0.00 0.00 4.18
385 459 5.574891 TGGTGTTTTATTGGAATGGATCG 57.425 39.130 0.00 0.00 0.00 3.69
386 460 8.791327 AAATTGGTGTTTTATTGGAATGGATC 57.209 30.769 0.00 0.00 0.00 3.36
417 492 4.687901 TTGTGAGGAGACTGTGAATTGA 57.312 40.909 0.00 0.00 44.43 2.57
421 496 4.963318 AAGATTGTGAGGAGACTGTGAA 57.037 40.909 0.00 0.00 44.43 3.18
422 497 4.963318 AAAGATTGTGAGGAGACTGTGA 57.037 40.909 0.00 0.00 44.43 3.58
427 502 4.021102 TGGGAAAAGATTGTGAGGAGAC 57.979 45.455 0.00 0.00 0.00 3.36
430 505 3.091545 GCATGGGAAAAGATTGTGAGGA 58.908 45.455 0.00 0.00 0.00 3.71
451 527 1.813513 GGAGGGGTTGATGCATATCG 58.186 55.000 0.00 0.00 36.04 2.92
461 537 3.970205 AAACCATACGGAGGGGTTG 57.030 52.632 0.00 0.00 43.82 3.77
464 540 0.106719 ATGCAAACCATACGGAGGGG 60.107 55.000 2.03 0.00 35.59 4.79
465 541 2.631160 TATGCAAACCATACGGAGGG 57.369 50.000 0.00 0.00 35.34 4.30
470 546 4.734854 GCAAGTTCATATGCAAACCATACG 59.265 41.667 0.00 0.00 42.12 3.06
480 556 0.734889 AGGCGTGCAAGTTCATATGC 59.265 50.000 0.59 0.00 42.86 3.14
481 557 2.283298 AGAGGCGTGCAAGTTCATATG 58.717 47.619 0.59 0.00 0.00 1.78
482 558 2.093500 TGAGAGGCGTGCAAGTTCATAT 60.093 45.455 0.59 0.00 0.00 1.78
483 559 1.275010 TGAGAGGCGTGCAAGTTCATA 59.725 47.619 0.59 0.00 0.00 2.15
484 560 0.035317 TGAGAGGCGTGCAAGTTCAT 59.965 50.000 0.59 0.00 0.00 2.57
485 561 0.601046 CTGAGAGGCGTGCAAGTTCA 60.601 55.000 0.59 0.59 0.00 3.18
486 562 0.319900 TCTGAGAGGCGTGCAAGTTC 60.320 55.000 0.59 0.03 0.00 3.01
487 563 0.106708 TTCTGAGAGGCGTGCAAGTT 59.893 50.000 0.59 0.00 0.00 2.66
489 565 1.446907 AATTCTGAGAGGCGTGCAAG 58.553 50.000 0.00 0.00 0.00 4.01
490 566 2.289382 TGTAATTCTGAGAGGCGTGCAA 60.289 45.455 0.00 0.00 0.00 4.08
491 567 1.275010 TGTAATTCTGAGAGGCGTGCA 59.725 47.619 0.00 0.00 0.00 4.57
492 568 1.661112 GTGTAATTCTGAGAGGCGTGC 59.339 52.381 0.00 0.00 0.00 5.34
493 569 1.920574 CGTGTAATTCTGAGAGGCGTG 59.079 52.381 0.00 0.00 0.00 5.34
494 570 1.135083 CCGTGTAATTCTGAGAGGCGT 60.135 52.381 0.00 0.00 0.00 5.68
517 593 3.567797 GTCGCGCAGGAAGATGGC 61.568 66.667 8.75 0.00 0.00 4.40
529 605 1.990799 TAGAGACCAATGTTGTCGCG 58.009 50.000 0.00 0.00 0.00 5.87
611 1011 3.508845 AAAACAGCTCAAGAAGGCCTA 57.491 42.857 5.16 0.00 0.00 3.93
634 1034 6.946340 TCCAAGAACAGCTCAAGAATACATA 58.054 36.000 0.00 0.00 0.00 2.29
635 1035 5.809001 TCCAAGAACAGCTCAAGAATACAT 58.191 37.500 0.00 0.00 0.00 2.29
638 1038 5.809001 ACATCCAAGAACAGCTCAAGAATA 58.191 37.500 0.00 0.00 0.00 1.75
692 1142 2.513895 CGGTGGGACCCAGTTGTT 59.486 61.111 15.52 0.00 33.75 2.83
771 1229 1.818221 CGATTCCGCCGACGAAATCC 61.818 60.000 0.00 0.00 43.93 3.01
858 1318 2.581354 CGGAGCTCCAGGAAGGTG 59.419 66.667 31.67 9.56 39.02 4.00
1011 1471 0.343372 AGAGATTGGGTCAGGGGCTA 59.657 55.000 0.00 0.00 0.00 3.93
1014 1474 1.589414 AAGAGAGATTGGGTCAGGGG 58.411 55.000 0.00 0.00 0.00 4.79
1126 1611 4.950434 TGCACGGGTTTTTAGCTAATAC 57.050 40.909 7.08 8.64 0.00 1.89
1127 1612 7.811117 ATATTGCACGGGTTTTTAGCTAATA 57.189 32.000 7.08 0.00 0.00 0.98
1128 1613 6.709018 ATATTGCACGGGTTTTTAGCTAAT 57.291 33.333 7.08 0.00 0.00 1.73
1147 1632 8.939929 CAATTCGACAGGTATTGAGCATATATT 58.060 33.333 1.31 0.00 32.36 1.28
1167 1653 8.414173 CGAAAAGGTAAATGTAACAACAATTCG 58.586 33.333 0.00 0.00 0.00 3.34
1352 1846 5.373812 AGAAATCAATAGATGACCGGGTT 57.626 39.130 6.32 0.00 41.93 4.11
1364 1858 8.353423 AGCTAAAAGAAGGCAAGAAATCAATA 57.647 30.769 0.00 0.00 0.00 1.90
1377 1871 2.095053 GCTGAAGCGAGCTAAAAGAAGG 59.905 50.000 0.00 0.00 35.95 3.46
1432 1933 3.417185 GCTGTTACTAAAGCGACAATGC 58.583 45.455 0.00 0.00 0.00 3.56
1452 1961 9.516314 AAGCGATTCAGTTAAAATATAAAAGGC 57.484 29.630 0.00 0.00 0.00 4.35
1626 2306 7.147880 ACCAAGAATACCAGTTAGCTAGTACAG 60.148 40.741 0.00 0.00 0.00 2.74
1654 2350 0.771127 TATCTTACCAGCCCATGCCC 59.229 55.000 0.00 0.00 38.69 5.36
1843 2541 8.525290 AAAACTCAGCAGGCAAGTTAATATAT 57.475 30.769 11.00 0.00 33.08 0.86
1847 2545 5.335976 GCTAAAACTCAGCAGGCAAGTTAAT 60.336 40.000 11.00 7.37 38.93 1.40
1854 2552 1.527034 CAGCTAAAACTCAGCAGGCA 58.473 50.000 0.00 0.00 41.66 4.75
1856 2554 1.198637 GTGCAGCTAAAACTCAGCAGG 59.801 52.381 0.00 0.00 41.66 4.85
1876 2575 4.270084 ACACTCGTTCAGTTGTACACAATG 59.730 41.667 0.00 0.00 38.24 2.82
1885 2584 6.347402 CCAACCTTTATACACTCGTTCAGTTG 60.347 42.308 0.00 0.00 30.26 3.16
1939 2646 7.934457 AGCCTAATGCAATCAAGTAACATAAG 58.066 34.615 0.00 0.00 44.83 1.73
1971 2679 1.139654 GACTAGCATGAGCATCCCACA 59.860 52.381 0.00 0.00 45.49 4.17
2034 2782 6.987386 TGGTACATGGTCACCATTTAAAAAG 58.013 36.000 6.58 0.00 42.23 2.27
2174 3041 5.116069 TGGAAACGAAATAACTTCAAGCC 57.884 39.130 0.00 0.00 33.17 4.35
2212 3080 4.570772 ACAAACTGTCACACATCACTACAC 59.429 41.667 0.00 0.00 0.00 2.90
2263 3141 1.940613 GAAACCTGTGTTCGCTCAGTT 59.059 47.619 0.00 0.00 37.10 3.16
2264 3142 1.134521 TGAAACCTGTGTTCGCTCAGT 60.135 47.619 0.00 0.00 37.10 3.41
2268 3146 1.400494 GTTGTGAAACCTGTGTTCGCT 59.600 47.619 0.00 0.00 34.36 4.93
2313 3191 8.525316 TGAAACCGTATTTCTAGACATGAAGTA 58.475 33.333 0.00 0.00 0.00 2.24
2326 3204 3.442273 TGGGCATTCTGAAACCGTATTTC 59.558 43.478 0.00 3.12 0.00 2.17
2402 3286 7.602753 AGCTACATTTTTAACCCTTTGATGAC 58.397 34.615 0.00 0.00 0.00 3.06
2438 3323 6.704289 ATGTGAACCATTTAGATGATGTGG 57.296 37.500 0.00 0.00 35.16 4.17
2459 3347 5.579511 GGAAAAGCCATCTGACATTTGAATG 59.420 40.000 2.29 2.29 38.32 2.67
2484 3372 6.183360 TGTTTTGCTTCCGCCATTCAATATAT 60.183 34.615 0.00 0.00 34.43 0.86
2486 3374 4.081752 TGTTTTGCTTCCGCCATTCAATAT 60.082 37.500 0.00 0.00 34.43 1.28
2491 3409 1.269517 TGTGTTTTGCTTCCGCCATTC 60.270 47.619 0.00 0.00 34.43 2.67
2729 4211 7.451732 TGGGATACTAGAGTACTACACTGATC 58.548 42.308 0.00 0.00 37.72 2.92
2765 4250 6.701340 AGCAAATACCGCATCATAGATAGAA 58.299 36.000 0.00 0.00 0.00 2.10
2775 4260 1.016627 TGCAGAGCAAATACCGCATC 58.983 50.000 0.00 0.00 34.76 3.91
2811 4297 3.365820 CGCAATTGCAACCTGAGAAATTC 59.634 43.478 28.77 0.00 42.21 2.17
2929 4425 0.323178 CTGGGCAGAGCAGGTTGAAT 60.323 55.000 0.00 0.00 0.00 2.57
2939 4435 4.335416 TCAAATAGAAAACCTGGGCAGAG 58.665 43.478 0.00 0.00 0.00 3.35
2941 4437 5.394553 GGATTCAAATAGAAAACCTGGGCAG 60.395 44.000 0.00 0.00 40.22 4.85
2943 4439 4.141937 GGGATTCAAATAGAAAACCTGGGC 60.142 45.833 0.00 0.00 40.22 5.36
2963 4459 5.940617 AGCATAACAAACATAGCATAGGGA 58.059 37.500 0.00 0.00 0.00 4.20
2978 4474 7.607607 ACACAGAAACAGATCAATAGCATAACA 59.392 33.333 0.00 0.00 0.00 2.41
2981 4477 8.565896 AAACACAGAAACAGATCAATAGCATA 57.434 30.769 0.00 0.00 0.00 3.14
3022 4520 4.708726 ACTTGCTAAATCAGATGGCAAC 57.291 40.909 12.08 0.00 37.87 4.17
3093 4592 8.988546 ACAATATAGTATGGCCAAATACAACA 57.011 30.769 10.96 0.00 35.79 3.33
3148 4647 0.808755 TCGTCGATACAGCTGCTTGA 59.191 50.000 15.27 8.20 0.00 3.02
3183 4687 2.507484 TCTGCAAGACCAGAAACATGG 58.493 47.619 0.00 0.00 46.47 3.66
3256 4772 3.128938 GTGGAGGTAGCACTACAGTACTG 59.871 52.174 21.44 21.44 37.78 2.74
3257 4773 3.245158 TGTGGAGGTAGCACTACAGTACT 60.245 47.826 9.87 0.00 37.78 2.73
3263 4779 0.895530 TGCTGTGGAGGTAGCACTAC 59.104 55.000 0.00 0.00 44.36 2.73
3362 4918 0.395586 AAGCAAGAACAGGGTGCACA 60.396 50.000 20.43 0.00 40.83 4.57
3366 4922 2.808543 GACTACAAGCAAGAACAGGGTG 59.191 50.000 0.00 0.00 0.00 4.61
3375 4931 5.827797 AGAGATAGAGAGGACTACAAGCAAG 59.172 44.000 0.00 0.00 0.00 4.01
3378 4934 6.374333 CCATAGAGATAGAGAGGACTACAAGC 59.626 46.154 0.00 0.00 0.00 4.01
3380 4936 7.634526 TCCATAGAGATAGAGAGGACTACAA 57.365 40.000 0.00 0.00 0.00 2.41
3385 4941 6.327386 AGGATCCATAGAGATAGAGAGGAC 57.673 45.833 15.82 0.00 0.00 3.85
3387 4943 7.060421 GGTAAGGATCCATAGAGATAGAGAGG 58.940 46.154 15.82 0.00 0.00 3.69
3389 4945 6.353169 CGGGTAAGGATCCATAGAGATAGAGA 60.353 46.154 15.82 0.00 0.00 3.10
3393 4949 5.531753 ACGGGTAAGGATCCATAGAGATA 57.468 43.478 15.82 0.00 0.00 1.98
3394 4950 4.405756 ACGGGTAAGGATCCATAGAGAT 57.594 45.455 15.82 0.00 0.00 2.75
3395 4951 3.897657 ACGGGTAAGGATCCATAGAGA 57.102 47.619 15.82 0.00 0.00 3.10
3399 4955 3.918566 TCTGAACGGGTAAGGATCCATA 58.081 45.455 15.82 2.91 0.00 2.74
3407 4963 3.190535 CCAAACCAATCTGAACGGGTAAG 59.809 47.826 0.00 0.00 32.21 2.34
3411 4967 1.616159 ACCAAACCAATCTGAACGGG 58.384 50.000 1.41 0.00 0.00 5.28
3414 4970 4.142469 CGGGATAACCAAACCAATCTGAAC 60.142 45.833 0.00 0.00 40.22 3.18
3416 4972 3.616219 CGGGATAACCAAACCAATCTGA 58.384 45.455 0.00 0.00 40.22 3.27
3417 4973 2.099098 GCGGGATAACCAAACCAATCTG 59.901 50.000 0.00 0.00 40.22 2.90
3418 4974 2.025321 AGCGGGATAACCAAACCAATCT 60.025 45.455 0.00 0.00 40.22 2.40
3419 4975 2.375146 AGCGGGATAACCAAACCAATC 58.625 47.619 0.00 0.00 40.22 2.67
3421 4977 2.618559 GGTAGCGGGATAACCAAACCAA 60.619 50.000 0.00 0.00 40.22 3.67
3422 4978 1.065272 GGTAGCGGGATAACCAAACCA 60.065 52.381 0.00 0.00 40.22 3.67
3423 4979 1.065272 TGGTAGCGGGATAACCAAACC 60.065 52.381 0.00 0.00 40.28 3.27
3424 4980 2.406596 TGGTAGCGGGATAACCAAAC 57.593 50.000 0.00 0.00 40.28 2.93
3425 4981 2.775384 AGATGGTAGCGGGATAACCAAA 59.225 45.455 0.00 0.00 45.91 3.28
3426 4982 2.367567 GAGATGGTAGCGGGATAACCAA 59.632 50.000 0.00 0.00 45.91 3.67
3427 4983 1.968493 GAGATGGTAGCGGGATAACCA 59.032 52.381 0.00 0.00 46.78 3.67
3428 4984 1.067776 CGAGATGGTAGCGGGATAACC 60.068 57.143 0.00 0.00 0.00 2.85
3429 4985 1.612463 ACGAGATGGTAGCGGGATAAC 59.388 52.381 0.00 0.00 0.00 1.89
3430 4986 1.991121 ACGAGATGGTAGCGGGATAA 58.009 50.000 0.00 0.00 0.00 1.75
3431 4987 1.991121 AACGAGATGGTAGCGGGATA 58.009 50.000 0.00 0.00 0.00 2.59
3432 4988 1.120530 AAACGAGATGGTAGCGGGAT 58.879 50.000 0.00 0.00 0.00 3.85
3433 4989 1.766494 TAAACGAGATGGTAGCGGGA 58.234 50.000 0.00 0.00 0.00 5.14
3434 4990 2.589798 TTAAACGAGATGGTAGCGGG 57.410 50.000 0.00 0.00 0.00 6.13
3435 4991 6.347402 CCATAATTTAAACGAGATGGTAGCGG 60.347 42.308 9.69 0.00 31.15 5.52
3436 4992 6.422701 TCCATAATTTAAACGAGATGGTAGCG 59.577 38.462 14.47 0.00 36.15 4.26
3437 4993 7.568861 CGTCCATAATTTAAACGAGATGGTAGC 60.569 40.741 14.47 0.00 36.15 3.58
3438 4994 7.568861 GCGTCCATAATTTAAACGAGATGGTAG 60.569 40.741 14.47 11.85 36.15 3.18
3439 4995 6.201425 GCGTCCATAATTTAAACGAGATGGTA 59.799 38.462 14.47 4.70 36.15 3.25
3440 4996 5.007332 GCGTCCATAATTTAAACGAGATGGT 59.993 40.000 14.47 0.00 36.15 3.55
3441 4997 5.007234 TGCGTCCATAATTTAAACGAGATGG 59.993 40.000 10.93 10.93 35.45 3.51
3442 4998 6.043327 TGCGTCCATAATTTAAACGAGATG 57.957 37.500 11.29 0.00 35.45 2.90
3443 4999 5.236478 CCTGCGTCCATAATTTAAACGAGAT 59.764 40.000 11.29 0.00 35.45 2.75
3447 5003 4.339429 CACCTGCGTCCATAATTTAAACG 58.661 43.478 0.00 0.00 36.48 3.60
3454 5010 4.559502 GCCACCTGCGTCCATAAT 57.440 55.556 0.00 0.00 0.00 1.28
3464 5020 4.774124 TCATGAGAAAAGATAGCCACCTG 58.226 43.478 0.00 0.00 0.00 4.00
3465 5021 5.441718 TTCATGAGAAAAGATAGCCACCT 57.558 39.130 0.00 0.00 0.00 4.00
3466 5022 5.009410 CCATTCATGAGAAAAGATAGCCACC 59.991 44.000 0.00 0.00 37.29 4.61
3467 5023 5.009410 CCCATTCATGAGAAAAGATAGCCAC 59.991 44.000 0.00 0.00 37.29 5.01
3472 5028 9.699410 ACATTTACCCATTCATGAGAAAAGATA 57.301 29.630 0.00 0.00 37.29 1.98
3478 5034 8.685427 CACATTACATTTACCCATTCATGAGAA 58.315 33.333 0.00 0.00 38.31 2.87
3479 5035 8.052141 TCACATTACATTTACCCATTCATGAGA 58.948 33.333 0.00 0.00 0.00 3.27
3485 5041 7.132213 CGACATCACATTACATTTACCCATTC 58.868 38.462 0.00 0.00 0.00 2.67
3488 5044 5.492895 ACGACATCACATTACATTTACCCA 58.507 37.500 0.00 0.00 0.00 4.51
3492 5048 7.708752 TGCAGATACGACATCACATTACATTTA 59.291 33.333 0.00 0.00 0.00 1.40
3493 5049 6.538381 TGCAGATACGACATCACATTACATTT 59.462 34.615 0.00 0.00 0.00 2.32
3500 5056 4.597404 AGATGCAGATACGACATCACAT 57.403 40.909 5.15 0.00 42.12 3.21
3501 5057 4.114794 CAAGATGCAGATACGACATCACA 58.885 43.478 5.15 0.00 42.12 3.58
3538 5097 3.120095 TGTTCTGCTGCAATTCGATTCAG 60.120 43.478 3.02 0.00 0.00 3.02
3557 5116 7.651304 TCAAAAATATTGCAGTTTCGACATGTT 59.349 29.630 0.00 0.00 0.00 2.71
3564 5123 7.591057 TGAACTCTCAAAAATATTGCAGTTTCG 59.409 33.333 0.00 0.00 0.00 3.46
3572 5131 7.530010 ACCGACATGAACTCTCAAAAATATTG 58.470 34.615 0.00 0.00 34.49 1.90
3576 5135 6.263168 AGAAACCGACATGAACTCTCAAAAAT 59.737 34.615 0.00 0.00 34.49 1.82
3586 5146 2.548057 TGCTTCAGAAACCGACATGAAC 59.452 45.455 0.00 0.00 0.00 3.18
3588 5148 2.542020 TGCTTCAGAAACCGACATGA 57.458 45.000 0.00 0.00 0.00 3.07
3589 5149 2.290367 TGTTGCTTCAGAAACCGACATG 59.710 45.455 0.00 0.00 32.50 3.21
3598 5348 3.314913 TCGAATTTGCTGTTGCTTCAGAA 59.685 39.130 11.67 0.00 40.48 3.02
3618 5391 3.005554 ACTTCAGCAAACAGATCCATCG 58.994 45.455 0.00 0.00 0.00 3.84
3623 5396 6.035843 TGTCAAAAACTTCAGCAAACAGATC 58.964 36.000 0.00 0.00 0.00 2.75
3635 5408 3.627577 TGGCAGACTCTGTCAAAAACTTC 59.372 43.478 11.04 0.00 43.43 3.01
3649 5437 5.068591 TGTTCACGTATATGTATGGCAGACT 59.931 40.000 14.03 1.88 0.00 3.24
3650 5438 5.175126 GTGTTCACGTATATGTATGGCAGAC 59.825 44.000 5.07 5.07 0.00 3.51
3651 5439 5.068591 AGTGTTCACGTATATGTATGGCAGA 59.931 40.000 0.00 0.00 0.00 4.26
3652 5440 5.175673 CAGTGTTCACGTATATGTATGGCAG 59.824 44.000 0.00 0.00 0.00 4.85
3653 5441 5.047188 CAGTGTTCACGTATATGTATGGCA 58.953 41.667 0.00 0.00 0.00 4.92
3654 5442 4.084537 GCAGTGTTCACGTATATGTATGGC 60.085 45.833 0.00 0.00 0.00 4.40
3655 5443 5.047188 TGCAGTGTTCACGTATATGTATGG 58.953 41.667 0.00 0.00 0.00 2.74
3656 5444 6.255670 AGTTGCAGTGTTCACGTATATGTATG 59.744 38.462 0.00 0.00 0.00 2.39
3657 5445 6.338146 AGTTGCAGTGTTCACGTATATGTAT 58.662 36.000 0.00 0.00 0.00 2.29
3658 5446 5.716094 AGTTGCAGTGTTCACGTATATGTA 58.284 37.500 0.00 0.00 0.00 2.29
3659 5447 4.566004 AGTTGCAGTGTTCACGTATATGT 58.434 39.130 0.00 0.00 0.00 2.29
3660 5448 5.805486 ACTAGTTGCAGTGTTCACGTATATG 59.195 40.000 0.00 0.00 0.00 1.78
3661 5449 5.962433 ACTAGTTGCAGTGTTCACGTATAT 58.038 37.500 0.00 0.00 0.00 0.86
3662 5450 5.182570 AGACTAGTTGCAGTGTTCACGTATA 59.817 40.000 0.00 0.00 0.00 1.47
3663 5451 4.022242 AGACTAGTTGCAGTGTTCACGTAT 60.022 41.667 0.00 0.00 0.00 3.06
3664 5452 3.317149 AGACTAGTTGCAGTGTTCACGTA 59.683 43.478 0.00 0.00 0.00 3.57
3665 5453 2.100916 AGACTAGTTGCAGTGTTCACGT 59.899 45.455 0.00 0.00 0.00 4.49
3666 5454 2.472861 CAGACTAGTTGCAGTGTTCACG 59.527 50.000 0.00 0.00 0.00 4.35
3667 5455 3.717707 TCAGACTAGTTGCAGTGTTCAC 58.282 45.455 0.00 0.00 0.00 3.18
3668 5456 4.400529 TTCAGACTAGTTGCAGTGTTCA 57.599 40.909 0.00 0.00 0.00 3.18
3669 5457 4.390297 GGATTCAGACTAGTTGCAGTGTTC 59.610 45.833 0.00 0.00 0.00 3.18
3670 5458 4.202357 TGGATTCAGACTAGTTGCAGTGTT 60.202 41.667 0.00 0.00 0.00 3.32
3671 5459 3.324846 TGGATTCAGACTAGTTGCAGTGT 59.675 43.478 0.00 0.00 0.00 3.55
3672 5460 3.930336 TGGATTCAGACTAGTTGCAGTG 58.070 45.455 0.00 0.00 0.00 3.66
3673 5461 4.623932 TTGGATTCAGACTAGTTGCAGT 57.376 40.909 0.00 0.00 0.00 4.40
3674 5462 6.506500 AAATTGGATTCAGACTAGTTGCAG 57.493 37.500 0.00 0.00 0.00 4.41
3675 5463 6.716628 AGAAAATTGGATTCAGACTAGTTGCA 59.283 34.615 0.00 0.00 0.00 4.08
3676 5464 7.150783 AGAAAATTGGATTCAGACTAGTTGC 57.849 36.000 0.00 0.00 0.00 4.17
3677 5465 9.007901 AGAAGAAAATTGGATTCAGACTAGTTG 57.992 33.333 0.00 0.00 0.00 3.16
3678 5466 9.007901 CAGAAGAAAATTGGATTCAGACTAGTT 57.992 33.333 0.00 0.00 0.00 2.24
3679 5467 7.120432 GCAGAAGAAAATTGGATTCAGACTAGT 59.880 37.037 0.00 0.00 0.00 2.57
3680 5468 7.414984 GGCAGAAGAAAATTGGATTCAGACTAG 60.415 40.741 0.00 0.00 0.00 2.57
3681 5469 6.375455 GGCAGAAGAAAATTGGATTCAGACTA 59.625 38.462 0.00 0.00 0.00 2.59
3698 5517 3.713003 TCAGGATACAGAAGGCAGAAGA 58.287 45.455 0.00 0.00 41.41 2.87
3702 5521 4.620589 ATGATCAGGATACAGAAGGCAG 57.379 45.455 0.09 0.00 34.90 4.85
3715 5534 4.818546 GGAGTGACATTTGGTATGATCAGG 59.181 45.833 0.09 0.00 0.00 3.86
3722 5541 2.308570 TGGCTGGAGTGACATTTGGTAT 59.691 45.455 0.00 0.00 0.00 2.73
3741 5560 1.730064 CCACGGTGATTTCGTTACTGG 59.270 52.381 10.28 0.00 38.94 4.00
3743 5562 1.270412 TGCCACGGTGATTTCGTTACT 60.270 47.619 10.28 0.00 38.94 2.24
3744 5563 1.149987 TGCCACGGTGATTTCGTTAC 58.850 50.000 10.28 0.00 38.94 2.50
3745 5564 2.102070 ATGCCACGGTGATTTCGTTA 57.898 45.000 10.28 0.00 38.94 3.18
3747 5566 1.365699 GTATGCCACGGTGATTTCGT 58.634 50.000 10.28 0.30 41.93 3.85
3758 5577 1.523934 GCGTATTACACCGTATGCCAC 59.476 52.381 0.00 0.00 0.00 5.01
3760 5579 0.780002 CGCGTATTACACCGTATGCC 59.220 55.000 0.00 0.00 30.84 4.40
3761 5580 1.480205 ACGCGTATTACACCGTATGC 58.520 50.000 11.67 0.00 33.91 3.14
3762 5581 3.118482 GCTTACGCGTATTACACCGTATG 59.882 47.826 21.30 15.48 36.69 2.39
3764 5583 2.096657 TGCTTACGCGTATTACACCGTA 59.903 45.455 21.30 10.76 39.65 4.02
3765 5584 1.135431 TGCTTACGCGTATTACACCGT 60.135 47.619 21.30 12.28 39.65 4.83
3766 5585 1.515631 CTGCTTACGCGTATTACACCG 59.484 52.381 21.30 4.46 39.65 4.94
3768 5587 2.533129 GGACTGCTTACGCGTATTACAC 59.467 50.000 21.30 10.06 39.65 2.90
3769 5588 2.424601 AGGACTGCTTACGCGTATTACA 59.575 45.455 21.30 16.58 39.65 2.41
3770 5589 3.075866 AGGACTGCTTACGCGTATTAC 57.924 47.619 21.30 12.80 39.65 1.89
3771 5590 4.129380 TCTAGGACTGCTTACGCGTATTA 58.871 43.478 21.30 4.99 39.65 0.98
3773 5592 2.548904 CTCTAGGACTGCTTACGCGTAT 59.451 50.000 21.30 4.07 39.65 3.06
3774 5593 1.938577 CTCTAGGACTGCTTACGCGTA 59.061 52.381 16.41 16.41 39.65 4.42
3775 5594 0.733729 CTCTAGGACTGCTTACGCGT 59.266 55.000 19.17 19.17 39.65 6.01
3776 5595 1.003331 CTCTCTAGGACTGCTTACGCG 60.003 57.143 3.53 3.53 39.65 6.01
3777 5596 2.018515 ACTCTCTAGGACTGCTTACGC 58.981 52.381 0.00 0.00 0.00 4.42
3778 5597 4.444536 ACTACTCTCTAGGACTGCTTACG 58.555 47.826 0.00 0.00 0.00 3.18
3779 5598 7.329226 CGTATACTACTCTCTAGGACTGCTTAC 59.671 44.444 0.56 0.00 0.00 2.34
3780 5599 7.377398 CGTATACTACTCTCTAGGACTGCTTA 58.623 42.308 0.56 0.00 0.00 3.09
3781 5600 6.225318 CGTATACTACTCTCTAGGACTGCTT 58.775 44.000 0.56 0.00 0.00 3.91
3782 5601 5.786311 CGTATACTACTCTCTAGGACTGCT 58.214 45.833 0.56 0.00 0.00 4.24
3783 5602 4.389687 GCGTATACTACTCTCTAGGACTGC 59.610 50.000 0.56 0.00 0.00 4.40
3784 5603 5.406175 GTGCGTATACTACTCTCTAGGACTG 59.594 48.000 0.56 0.00 0.00 3.51
3785 5604 5.305128 AGTGCGTATACTACTCTCTAGGACT 59.695 44.000 0.56 0.00 0.00 3.85
3786 5605 5.406175 CAGTGCGTATACTACTCTCTAGGAC 59.594 48.000 0.56 0.00 0.00 3.85
3787 5606 5.511031 CCAGTGCGTATACTACTCTCTAGGA 60.511 48.000 0.56 0.00 0.00 2.94
3788 5607 4.691685 CCAGTGCGTATACTACTCTCTAGG 59.308 50.000 0.56 0.00 0.00 3.02
3789 5608 4.152759 GCCAGTGCGTATACTACTCTCTAG 59.847 50.000 0.56 0.00 0.00 2.43
3790 5609 4.063689 GCCAGTGCGTATACTACTCTCTA 58.936 47.826 0.56 0.00 0.00 2.43
3791 5610 2.879646 GCCAGTGCGTATACTACTCTCT 59.120 50.000 0.56 0.00 0.00 3.10
3792 5611 3.270962 GCCAGTGCGTATACTACTCTC 57.729 52.381 0.56 0.00 0.00 3.20
3805 5624 0.454452 GAAATCGAAACCGCCAGTGC 60.454 55.000 0.00 0.00 0.00 4.40
3806 5625 1.156736 AGAAATCGAAACCGCCAGTG 58.843 50.000 0.00 0.00 0.00 3.66
3807 5626 1.535462 CAAGAAATCGAAACCGCCAGT 59.465 47.619 0.00 0.00 0.00 4.00
3859 5678 3.649986 GTATGCATCGCGGCCCAC 61.650 66.667 6.13 0.00 0.00 4.61
3874 5706 2.147958 GAAAACGATGGCCTGTGTGTA 58.852 47.619 3.32 0.00 0.00 2.90
3875 5707 0.951558 GAAAACGATGGCCTGTGTGT 59.048 50.000 3.32 0.00 0.00 3.72
3879 5711 1.613437 CAAAGGAAAACGATGGCCTGT 59.387 47.619 3.32 0.00 0.00 4.00
3882 5714 0.316841 TGCAAAGGAAAACGATGGCC 59.683 50.000 0.00 0.00 0.00 5.36
3892 5724 4.284550 AGGGCCGCTGCAAAGGAA 62.285 61.111 10.97 0.00 40.13 3.36
3894 5726 4.729918 AGAGGGCCGCTGCAAAGG 62.730 66.667 9.70 2.91 40.13 3.11
3903 5735 2.691674 GATGAAGCGAGAGAGGGCCG 62.692 65.000 0.00 0.00 0.00 6.13
3906 5738 1.745264 GGGATGAAGCGAGAGAGGG 59.255 63.158 0.00 0.00 0.00 4.30
3918 5750 3.488569 GCCGGGATGTGGGGATGA 61.489 66.667 2.18 0.00 0.00 2.92
4134 6353 3.264159 CGCGCGAAGGCATCATCA 61.264 61.111 28.94 0.00 39.92 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.