Multiple sequence alignment - TraesCS1A01G369700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G369700 chr1A 100.000 8955 0 0 1 8955 547319484 547310530 0.000000e+00 16537.0
1 TraesCS1A01G369700 chr1B 93.398 7528 271 100 655 8024 622483143 622475684 0.000000e+00 10940.0
2 TraesCS1A01G369700 chr1B 87.258 981 48 27 8022 8955 622475648 622474698 0.000000e+00 1048.0
3 TraesCS1A01G369700 chr1B 90.302 629 47 6 1433 2052 426153464 426152841 0.000000e+00 811.0
4 TraesCS1A01G369700 chr1B 87.179 312 35 5 1 310 622484041 622483733 5.140000e-92 350.0
5 TraesCS1A01G369700 chr1B 90.654 107 7 2 307 413 622483573 622483470 1.210000e-28 139.0
6 TraesCS1A01G369700 chr1D 94.701 3623 97 36 1306 4856 452493435 452489836 0.000000e+00 5539.0
7 TraesCS1A01G369700 chr1D 90.420 1952 106 38 6129 8032 452487949 452486031 0.000000e+00 2494.0
8 TraesCS1A01G369700 chr1D 96.285 996 34 3 4854 5847 452489601 452488607 0.000000e+00 1631.0
9 TraesCS1A01G369700 chr1D 86.785 961 47 29 8056 8953 452485967 452485024 0.000000e+00 998.0
10 TraesCS1A01G369700 chr1D 89.685 572 22 13 602 1171 452494202 452493666 0.000000e+00 695.0
11 TraesCS1A01G369700 chr1D 85.348 273 16 10 5891 6139 452488617 452488345 2.480000e-65 261.0
12 TraesCS1A01G369700 chr6D 94.079 304 11 4 1510 1810 473431763 473432062 1.060000e-123 455.0
13 TraesCS1A01G369700 chr6D 94.215 121 6 1 1913 2032 473432067 473432187 5.520000e-42 183.0
14 TraesCS1A01G369700 chr2D 87.467 375 46 1 2301 2675 69263184 69262811 1.790000e-116 431.0
15 TraesCS1A01G369700 chr2D 85.799 338 46 2 2652 2987 69262750 69262413 3.070000e-94 357.0
16 TraesCS1A01G369700 chr6B 90.446 314 26 2 1510 1823 384451408 384451099 2.330000e-110 411.0
17 TraesCS1A01G369700 chr6B 86.425 221 23 5 2499 2714 101214561 101214779 1.500000e-57 235.0
18 TraesCS1A01G369700 chr6B 90.323 155 10 4 1899 2051 384451106 384450955 1.970000e-46 198.0
19 TraesCS1A01G369700 chr6B 94.690 113 5 1 4571 4683 57607187 57607076 3.320000e-39 174.0
20 TraesCS1A01G369700 chr6B 92.793 111 6 2 414 523 204938556 204938447 9.310000e-35 159.0
21 TraesCS1A01G369700 chr6B 90.678 118 9 2 413 528 120808273 120808156 1.200000e-33 156.0
22 TraesCS1A01G369700 chr6B 92.593 108 7 1 414 520 525565613 525565720 4.330000e-33 154.0
23 TraesCS1A01G369700 chr6B 92.523 107 7 1 414 519 544281673 544281779 1.560000e-32 152.0
24 TraesCS1A01G369700 chr6B 93.443 61 4 0 1431 1491 384452116 384452056 3.440000e-14 91.6
25 TraesCS1A01G369700 chr6B 97.500 40 1 0 4596 4635 57607053 57607014 1.610000e-07 69.4
26 TraesCS1A01G369700 chr7B 88.176 296 23 4 4510 4796 105657660 105657952 8.610000e-90 342.0
27 TraesCS1A01G369700 chr7B 94.690 113 5 1 4571 4683 531642204 531642315 3.320000e-39 174.0
28 TraesCS1A01G369700 chr7B 89.024 82 8 1 2499 2580 500212939 500213019 5.720000e-17 100.0
29 TraesCS1A01G369700 chr7B 86.905 84 9 2 1307 1389 660362303 660362221 9.570000e-15 93.5
30 TraesCS1A01G369700 chr7B 85.366 82 11 1 1309 1389 699156021 699155940 5.760000e-12 84.2
31 TraesCS1A01G369700 chr7B 97.500 40 1 0 4596 4635 531642338 531642377 1.610000e-07 69.4
32 TraesCS1A01G369700 chr3B 86.425 221 23 5 2499 2714 751096360 751096142 1.500000e-57 235.0
33 TraesCS1A01G369700 chr3B 91.964 112 7 2 414 524 15806624 15806514 1.200000e-33 156.0
34 TraesCS1A01G369700 chr3B 89.076 119 12 1 410 527 41023074 41023192 7.250000e-31 147.0
35 TraesCS1A01G369700 chr3B 92.553 94 7 0 1057 1150 470059339 470059246 1.570000e-27 135.0
36 TraesCS1A01G369700 chr3B 91.209 91 6 2 1318 1407 470059100 470059011 1.220000e-23 122.0
37 TraesCS1A01G369700 chr5B 86.854 213 22 4 2507 2714 533440210 533439999 5.410000e-57 233.0
38 TraesCS1A01G369700 chr5B 85.973 221 24 5 2499 2714 466528860 466529078 6.990000e-56 230.0
39 TraesCS1A01G369700 chr5B 95.200 125 5 1 1909 2032 439600083 439599959 7.090000e-46 196.0
40 TraesCS1A01G369700 chr5B 91.892 111 7 2 410 519 666202102 666201993 4.330000e-33 154.0
41 TraesCS1A01G369700 chrUn 94.400 125 6 1 1909 2032 216239634 216239758 3.300000e-44 191.0
42 TraesCS1A01G369700 chrUn 94.400 125 6 1 1909 2032 315595282 315595406 3.300000e-44 191.0
43 TraesCS1A01G369700 chr2B 94.400 125 6 1 1909 2032 41939728 41939604 3.300000e-44 191.0
44 TraesCS1A01G369700 chr2B 91.150 113 8 2 409 520 730899291 730899402 1.560000e-32 152.0
45 TraesCS1A01G369700 chr2B 85.366 82 11 1 1309 1389 369808530 369808449 5.760000e-12 84.2
46 TraesCS1A01G369700 chr4B 92.593 108 7 1 413 519 599234067 599233960 4.330000e-33 154.0
47 TraesCS1A01G369700 chr3D 92.553 94 7 0 1057 1150 360935355 360935262 1.570000e-27 135.0
48 TraesCS1A01G369700 chr3D 92.857 84 5 1 1324 1407 360935108 360935026 4.390000e-23 121.0
49 TraesCS1A01G369700 chr3A 92.553 94 7 0 1057 1150 481074833 481074740 1.570000e-27 135.0
50 TraesCS1A01G369700 chr3A 92.857 84 5 1 1324 1407 481074575 481074493 4.390000e-23 121.0
51 TraesCS1A01G369700 chr7D 89.706 68 7 0 1321 1388 588067911 588067844 4.450000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G369700 chr1A 547310530 547319484 8954 True 16537.000000 16537 100.000000 1 8955 1 chr1A.!!$R1 8954
1 TraesCS1A01G369700 chr1B 622474698 622484041 9343 True 3119.250000 10940 89.622250 1 8955 4 chr1B.!!$R2 8954
2 TraesCS1A01G369700 chr1B 426152841 426153464 623 True 811.000000 811 90.302000 1433 2052 1 chr1B.!!$R1 619
3 TraesCS1A01G369700 chr1D 452485024 452494202 9178 True 1936.333333 5539 90.537333 602 8953 6 chr1D.!!$R1 8351
4 TraesCS1A01G369700 chr2D 69262413 69263184 771 True 394.000000 431 86.633000 2301 2987 2 chr2D.!!$R1 686
5 TraesCS1A01G369700 chr6B 384450955 384452116 1161 True 233.533333 411 91.404000 1431 2051 3 chr6B.!!$R4 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1333 0.818296 CGAACAAACACCCAACCCAA 59.182 50.000 0.00 0.0 0.00 4.12 F
979 1335 0.906066 AACAAACACCCAACCCAACC 59.094 50.000 0.00 0.0 0.00 3.77 F
980 1336 0.978667 ACAAACACCCAACCCAACCC 60.979 55.000 0.00 0.0 0.00 4.11 F
1688 2780 1.202405 CCCGCAATTGGATTGTAAGCC 60.202 52.381 7.72 0.0 42.20 4.35 F
2338 3467 0.249405 GGAGGATTCTGCAGCTCTCG 60.249 60.000 9.47 0.0 0.00 4.04 F
3008 4224 1.588674 TTGTTTGTGCCCTAGTGTCG 58.411 50.000 0.00 0.0 0.00 4.35 F
3110 4326 2.490903 CCAATTCCTGCTCTTCAACCTG 59.509 50.000 0.00 0.0 0.00 4.00 F
4457 5709 0.975887 AAATGCATGCGGGGAAAAGT 59.024 45.000 14.09 0.0 0.00 2.66 F
5188 6690 3.146847 GTTGTTTCACCTCCTACCAAGG 58.853 50.000 0.00 0.0 45.21 3.61 F
5706 7213 0.967380 GGTTGCCAGCAGCCAGTTAT 60.967 55.000 19.29 0.0 45.06 1.89 F
7596 9626 0.107654 GAATCCCTTCGGACCACCAG 60.108 60.000 0.00 0.0 42.48 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 3447 0.106521 GAGAGCTGCAGAATCCTCCC 59.893 60.000 20.43 0.92 0.00 4.30 R
2319 3448 0.249405 CGAGAGCTGCAGAATCCTCC 60.249 60.000 20.43 7.54 0.00 4.30 R
2320 3449 0.743688 TCGAGAGCTGCAGAATCCTC 59.256 55.000 20.43 14.29 0.00 3.71 R
3278 4500 0.253044 TAGAAAGGCAAGGCGCAGAT 59.747 50.000 10.83 0.00 45.17 2.90 R
3448 4670 3.650139 AGATGTCTTACGGTCAACACAC 58.350 45.455 0.00 0.00 0.00 3.82 R
4057 5305 4.223320 AGATTAACAACCAGCACAAACG 57.777 40.909 0.00 0.00 0.00 3.60 R
5103 6605 2.497675 CCTTTCCTCTTCGACAGGATCA 59.502 50.000 12.21 3.37 39.91 2.92 R
5453 6960 1.134753 CCAGTTGTTGAAGTGCTTGCA 59.865 47.619 0.00 0.00 31.90 4.08 R
6874 8861 0.307760 GATAAATGGGAAGGCGCACG 59.692 55.000 10.83 0.00 39.97 5.34 R
7623 9659 0.890683 AATGGGTTTACTGCTGCAGC 59.109 50.000 31.89 31.89 42.50 5.25 R
8842 11039 0.392461 AATTTTAGCCGAGGCAGCGA 60.392 50.000 17.18 0.00 44.88 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.560636 AGCATTTTATAGTGGGCTCGT 57.439 42.857 0.00 0.00 0.00 4.18
89 90 2.111384 ACCGCACATCTCTTCATAGGT 58.889 47.619 0.00 0.00 0.00 3.08
97 98 5.299531 CACATCTCTTCATAGGTTCCGACTA 59.700 44.000 0.00 0.00 0.00 2.59
117 118 1.819928 CCATTGTGGTCCAATCGACA 58.180 50.000 0.00 0.00 41.93 4.35
120 121 2.849294 TTGTGGTCCAATCGACATCA 57.151 45.000 0.00 0.00 43.95 3.07
124 125 1.202521 TGGTCCAATCGACATCATCCG 60.203 52.381 0.00 0.00 43.95 4.18
127 128 1.341209 TCCAATCGACATCATCCGAGG 59.659 52.381 0.00 0.00 38.25 4.63
128 129 1.069204 CCAATCGACATCATCCGAGGT 59.931 52.381 0.00 0.00 39.29 3.85
132 133 1.609072 TCGACATCATCCGAGGTGATC 59.391 52.381 0.00 0.00 36.00 2.92
151 152 2.945278 TCGTTTGCAATGCCTTCATTC 58.055 42.857 1.53 0.00 40.74 2.67
180 181 7.523293 TGTCAGTGTCATAATGAAACCATTT 57.477 32.000 0.00 0.00 35.19 2.32
195 196 3.299503 ACCATTTCATATGTCCCCTTGC 58.700 45.455 1.90 0.00 0.00 4.01
219 220 6.620678 CATTCCACAACTTTGGGTTAGTATG 58.379 40.000 0.00 0.00 37.24 2.39
220 221 5.570205 TCCACAACTTTGGGTTAGTATGA 57.430 39.130 0.00 0.00 37.24 2.15
226 227 3.007614 ACTTTGGGTTAGTATGAGTGCGT 59.992 43.478 0.00 0.00 0.00 5.24
229 230 2.094390 TGGGTTAGTATGAGTGCGTCAC 60.094 50.000 2.28 2.28 38.28 3.67
230 231 2.094390 GGGTTAGTATGAGTGCGTCACA 60.094 50.000 11.58 0.00 38.28 3.58
243 245 1.134530 CGTCACAGAGATTCGGTCGC 61.135 60.000 0.00 0.00 0.00 5.19
275 277 1.209128 CGTCAAGCACGGCCTATAAG 58.791 55.000 0.00 0.00 45.46 1.73
276 278 1.470979 CGTCAAGCACGGCCTATAAGT 60.471 52.381 0.00 0.00 45.46 2.24
277 279 2.223641 CGTCAAGCACGGCCTATAAGTA 60.224 50.000 0.00 0.00 45.46 2.24
282 284 5.353123 TCAAGCACGGCCTATAAGTAAAAAG 59.647 40.000 0.00 0.00 0.00 2.27
287 289 6.348704 GCACGGCCTATAAGTAAAAAGAAACA 60.349 38.462 0.00 0.00 0.00 2.83
336 500 9.950680 AGATTGTAAGTTAGAACATTTTGTGTG 57.049 29.630 0.00 0.00 41.14 3.82
337 501 9.730420 GATTGTAAGTTAGAACATTTTGTGTGT 57.270 29.630 0.00 0.00 41.14 3.72
345 509 9.730420 GTTAGAACATTTTGTGTGTCAGTAAAT 57.270 29.630 0.00 0.00 41.14 1.40
370 534 9.881773 ATAAAGAGGCCATATAAATCCTGAAAA 57.118 29.630 5.01 0.00 0.00 2.29
381 545 9.874205 ATATAAATCCTGAAAACATTGTTGGTG 57.126 29.630 2.13 0.00 0.00 4.17
388 552 5.788450 TGAAAACATTGTTGGTGTCACTTT 58.212 33.333 2.13 0.00 31.57 2.66
390 554 6.708054 TGAAAACATTGTTGGTGTCACTTTTT 59.292 30.769 2.13 0.00 31.57 1.94
420 584 9.354673 TCAAAATCAAATCACTTCTTACTTCCT 57.645 29.630 0.00 0.00 0.00 3.36
421 585 9.617975 CAAAATCAAATCACTTCTTACTTCCTC 57.382 33.333 0.00 0.00 0.00 3.71
422 586 7.929941 AATCAAATCACTTCTTACTTCCTCC 57.070 36.000 0.00 0.00 0.00 4.30
423 587 5.479306 TCAAATCACTTCTTACTTCCTCCG 58.521 41.667 0.00 0.00 0.00 4.63
424 588 5.011738 TCAAATCACTTCTTACTTCCTCCGT 59.988 40.000 0.00 0.00 0.00 4.69
425 589 5.485209 AATCACTTCTTACTTCCTCCGTT 57.515 39.130 0.00 0.00 0.00 4.44
426 590 4.516365 TCACTTCTTACTTCCTCCGTTC 57.484 45.455 0.00 0.00 0.00 3.95
427 591 3.257624 TCACTTCTTACTTCCTCCGTTCC 59.742 47.826 0.00 0.00 0.00 3.62
428 592 3.006537 CACTTCTTACTTCCTCCGTTCCA 59.993 47.826 0.00 0.00 0.00 3.53
429 593 3.644738 ACTTCTTACTTCCTCCGTTCCAA 59.355 43.478 0.00 0.00 0.00 3.53
430 594 4.102054 ACTTCTTACTTCCTCCGTTCCAAA 59.898 41.667 0.00 0.00 0.00 3.28
431 595 4.903045 TCTTACTTCCTCCGTTCCAAAT 57.097 40.909 0.00 0.00 0.00 2.32
432 596 5.237236 TCTTACTTCCTCCGTTCCAAATT 57.763 39.130 0.00 0.00 0.00 1.82
433 597 6.363167 TCTTACTTCCTCCGTTCCAAATTA 57.637 37.500 0.00 0.00 0.00 1.40
434 598 6.168389 TCTTACTTCCTCCGTTCCAAATTAC 58.832 40.000 0.00 0.00 0.00 1.89
435 599 4.635699 ACTTCCTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
436 600 4.981812 ACTTCCTCCGTTCCAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
437 601 5.382616 ACTTCCTCCGTTCCAAATTACTTT 58.617 37.500 0.00 0.00 0.00 2.66
438 602 5.472478 ACTTCCTCCGTTCCAAATTACTTTC 59.528 40.000 0.00 0.00 0.00 2.62
439 603 3.998341 TCCTCCGTTCCAAATTACTTTCG 59.002 43.478 0.00 0.00 0.00 3.46
440 604 3.425758 CCTCCGTTCCAAATTACTTTCGC 60.426 47.826 0.00 0.00 0.00 4.70
441 605 3.139850 TCCGTTCCAAATTACTTTCGCA 58.860 40.909 0.00 0.00 0.00 5.10
442 606 3.754323 TCCGTTCCAAATTACTTTCGCAT 59.246 39.130 0.00 0.00 0.00 4.73
443 607 3.851403 CCGTTCCAAATTACTTTCGCATG 59.149 43.478 0.00 0.00 0.00 4.06
444 608 4.472286 CGTTCCAAATTACTTTCGCATGT 58.528 39.130 0.00 0.00 0.00 3.21
445 609 5.391097 CCGTTCCAAATTACTTTCGCATGTA 60.391 40.000 0.00 0.00 0.00 2.29
446 610 6.255215 CGTTCCAAATTACTTTCGCATGTAT 58.745 36.000 0.00 0.00 0.00 2.29
447 611 6.194508 CGTTCCAAATTACTTTCGCATGTATG 59.805 38.462 0.00 0.00 0.00 2.39
448 612 6.130298 TCCAAATTACTTTCGCATGTATGG 57.870 37.500 0.00 0.00 0.00 2.74
449 613 5.883115 TCCAAATTACTTTCGCATGTATGGA 59.117 36.000 0.00 0.00 0.00 3.41
450 614 6.545666 TCCAAATTACTTTCGCATGTATGGAT 59.454 34.615 0.00 0.00 0.00 3.41
451 615 6.638063 CCAAATTACTTTCGCATGTATGGATG 59.362 38.462 0.00 0.00 0.00 3.51
452 616 6.942532 AATTACTTTCGCATGTATGGATGT 57.057 33.333 0.00 0.00 0.00 3.06
453 617 8.341903 CAAATTACTTTCGCATGTATGGATGTA 58.658 33.333 0.00 0.00 0.00 2.29
454 618 8.621532 AATTACTTTCGCATGTATGGATGTAT 57.378 30.769 0.00 0.00 0.00 2.29
455 619 7.652300 TTACTTTCGCATGTATGGATGTATC 57.348 36.000 0.00 0.00 0.00 2.24
456 620 5.858381 ACTTTCGCATGTATGGATGTATCT 58.142 37.500 0.00 0.00 0.00 1.98
457 621 6.993079 ACTTTCGCATGTATGGATGTATCTA 58.007 36.000 0.00 0.00 0.00 1.98
458 622 7.093354 ACTTTCGCATGTATGGATGTATCTAG 58.907 38.462 0.00 0.00 0.00 2.43
459 623 6.834168 TTCGCATGTATGGATGTATCTAGA 57.166 37.500 0.00 0.00 0.00 2.43
460 624 7.410120 TTCGCATGTATGGATGTATCTAGAT 57.590 36.000 10.73 10.73 0.00 1.98
461 625 6.799512 TCGCATGTATGGATGTATCTAGATG 58.200 40.000 15.79 0.00 0.00 2.90
462 626 5.461407 CGCATGTATGGATGTATCTAGATGC 59.539 44.000 15.79 14.54 31.22 3.91
463 627 6.343703 GCATGTATGGATGTATCTAGATGCA 58.656 40.000 23.38 23.38 37.79 3.96
464 628 6.990939 GCATGTATGGATGTATCTAGATGCAT 59.009 38.462 29.54 29.54 44.84 3.96
465 629 7.498239 GCATGTATGGATGTATCTAGATGCATT 59.502 37.037 29.66 19.73 42.77 3.56
466 630 9.392259 CATGTATGGATGTATCTAGATGCATTT 57.608 33.333 29.66 21.25 42.77 2.32
467 631 9.970553 ATGTATGGATGTATCTAGATGCATTTT 57.029 29.630 29.66 20.99 42.77 1.82
472 636 9.494271 TGGATGTATCTAGATGCATTTTAGTTC 57.506 33.333 29.66 18.97 42.77 3.01
473 637 9.717942 GGATGTATCTAGATGCATTTTAGTTCT 57.282 33.333 29.66 11.50 42.77 3.01
492 656 7.251704 AGTTCTAAATACATCCATTTCAGCG 57.748 36.000 0.00 0.00 30.84 5.18
493 657 7.047891 AGTTCTAAATACATCCATTTCAGCGA 58.952 34.615 0.00 0.00 30.84 4.93
494 658 6.844696 TCTAAATACATCCATTTCAGCGAC 57.155 37.500 0.00 0.00 30.84 5.19
495 659 4.536364 AAATACATCCATTTCAGCGACG 57.464 40.909 0.00 0.00 0.00 5.12
496 660 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
497 661 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
498 662 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
499 663 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
500 664 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
501 665 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
502 666 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
503 667 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
504 668 5.412640 TCCATTTCAGCGACGAGTAATTTA 58.587 37.500 0.00 0.00 0.00 1.40
505 669 5.518847 TCCATTTCAGCGACGAGTAATTTAG 59.481 40.000 0.00 0.00 0.00 1.85
506 670 5.518847 CCATTTCAGCGACGAGTAATTTAGA 59.481 40.000 0.00 0.00 0.00 2.10
507 671 6.035650 CCATTTCAGCGACGAGTAATTTAGAA 59.964 38.462 0.00 0.00 0.00 2.10
508 672 7.254455 CCATTTCAGCGACGAGTAATTTAGAAT 60.254 37.037 0.00 0.00 0.00 2.40
509 673 8.752254 CATTTCAGCGACGAGTAATTTAGAATA 58.248 33.333 0.00 0.00 0.00 1.75
510 674 7.909777 TTCAGCGACGAGTAATTTAGAATAG 57.090 36.000 0.00 0.00 0.00 1.73
511 675 7.255491 TCAGCGACGAGTAATTTAGAATAGA 57.745 36.000 0.00 0.00 0.00 1.98
512 676 7.353497 TCAGCGACGAGTAATTTAGAATAGAG 58.647 38.462 0.00 0.00 0.00 2.43
513 677 6.579292 CAGCGACGAGTAATTTAGAATAGAGG 59.421 42.308 0.00 0.00 0.00 3.69
514 678 5.857517 GCGACGAGTAATTTAGAATAGAGGG 59.142 44.000 0.00 0.00 0.00 4.30
515 679 6.293845 GCGACGAGTAATTTAGAATAGAGGGA 60.294 42.308 0.00 0.00 0.00 4.20
516 680 7.299586 CGACGAGTAATTTAGAATAGAGGGAG 58.700 42.308 0.00 0.00 0.00 4.30
517 681 7.041235 CGACGAGTAATTTAGAATAGAGGGAGT 60.041 40.741 0.00 0.00 0.00 3.85
518 682 9.282569 GACGAGTAATTTAGAATAGAGGGAGTA 57.717 37.037 0.00 0.00 0.00 2.59
519 683 9.065798 ACGAGTAATTTAGAATAGAGGGAGTAC 57.934 37.037 0.00 0.00 0.00 2.73
520 684 8.229137 CGAGTAATTTAGAATAGAGGGAGTACG 58.771 40.741 0.00 0.00 0.00 3.67
534 698 6.323996 AGAGGGAGTACGTTTGAATATGATGA 59.676 38.462 0.00 0.00 0.00 2.92
542 706 7.539712 ACGTTTGAATATGATGAGTGTAAGG 57.460 36.000 0.00 0.00 0.00 2.69
551 715 8.818141 ATATGATGAGTGTAAGGTACATTTCG 57.182 34.615 0.00 0.00 41.34 3.46
557 721 4.282703 AGTGTAAGGTACATTTCGGACACT 59.717 41.667 16.73 16.73 41.34 3.55
561 725 6.814644 TGTAAGGTACATTTCGGACACTATTG 59.185 38.462 0.00 0.00 32.89 1.90
567 732 4.094887 ACATTTCGGACACTATTGATGTGC 59.905 41.667 0.00 0.00 38.86 4.57
588 753 8.657074 TGTGCATCAGTAAAATATGTACTACC 57.343 34.615 0.00 0.00 37.21 3.18
592 757 6.409524 TCAGTAAAATATGTACTACCCCCG 57.590 41.667 0.00 0.00 30.54 5.73
595 760 7.049754 CAGTAAAATATGTACTACCCCCGTTT 58.950 38.462 0.00 0.00 30.54 3.60
596 761 7.225341 CAGTAAAATATGTACTACCCCCGTTTC 59.775 40.741 0.00 0.00 30.54 2.78
600 924 2.607499 TGTACTACCCCCGTTTCTGAA 58.393 47.619 0.00 0.00 0.00 3.02
663 987 6.096001 CGGAGGGTGTACTAGTAAAGTGTAAT 59.904 42.308 3.61 0.00 39.39 1.89
677 1030 9.626045 AGTAAAGTGTAATTGCAATTTTAGCTC 57.374 29.630 28.45 16.18 37.71 4.09
678 1031 7.889589 AAAGTGTAATTGCAATTTTAGCTCC 57.110 32.000 28.45 10.71 33.64 4.70
699 1052 5.992729 TCCTAACACAAATTTACGAGTTGC 58.007 37.500 0.00 0.00 36.83 4.17
700 1053 5.527951 TCCTAACACAAATTTACGAGTTGCA 59.472 36.000 0.00 0.00 36.83 4.08
701 1054 5.851177 CCTAACACAAATTTACGAGTTGCAG 59.149 40.000 0.00 0.00 36.83 4.41
745 1098 1.419922 CAACATTCGCTCGAACCCG 59.580 57.895 6.88 2.18 36.91 5.28
768 1121 1.060698 GAATTTCTCGAACCTTCCGCG 59.939 52.381 0.00 0.00 0.00 6.46
976 1332 1.668101 GCGAACAAACACCCAACCCA 61.668 55.000 0.00 0.00 0.00 4.51
977 1333 0.818296 CGAACAAACACCCAACCCAA 59.182 50.000 0.00 0.00 0.00 4.12
978 1334 1.470112 CGAACAAACACCCAACCCAAC 60.470 52.381 0.00 0.00 0.00 3.77
979 1335 0.906066 AACAAACACCCAACCCAACC 59.094 50.000 0.00 0.00 0.00 3.77
980 1336 0.978667 ACAAACACCCAACCCAACCC 60.979 55.000 0.00 0.00 0.00 4.11
981 1337 1.383386 AAACACCCAACCCAACCCC 60.383 57.895 0.00 0.00 0.00 4.95
982 1338 2.900269 AAACACCCAACCCAACCCCC 62.900 60.000 0.00 0.00 0.00 5.40
1221 1579 2.248280 TTTTGACCTAAGTCTGCGCA 57.752 45.000 10.98 10.98 43.91 6.09
1255 1613 3.483869 ATGGCTCTCCCTTCGGGC 61.484 66.667 0.00 0.00 43.94 6.13
1304 1662 2.125512 ATCTGCGCGGTTCTGACC 60.126 61.111 17.37 0.00 42.87 4.02
1478 1941 3.003480 GGCTCATAATTAGATCGTGCCC 58.997 50.000 0.00 0.00 32.50 5.36
1479 1942 3.557054 GGCTCATAATTAGATCGTGCCCA 60.557 47.826 0.00 0.00 32.50 5.36
1480 1943 3.433615 GCTCATAATTAGATCGTGCCCAC 59.566 47.826 0.00 0.00 0.00 4.61
1533 2625 2.363359 CCTGCTTTTCTTTCTGTTGGCT 59.637 45.455 0.00 0.00 0.00 4.75
1534 2626 3.181472 CCTGCTTTTCTTTCTGTTGGCTT 60.181 43.478 0.00 0.00 0.00 4.35
1535 2627 4.045636 TGCTTTTCTTTCTGTTGGCTTC 57.954 40.909 0.00 0.00 0.00 3.86
1536 2628 3.045688 GCTTTTCTTTCTGTTGGCTTCG 58.954 45.455 0.00 0.00 0.00 3.79
1554 2646 2.083774 TCGGCTGGTGTTTGATTGATC 58.916 47.619 0.00 0.00 0.00 2.92
1688 2780 1.202405 CCCGCAATTGGATTGTAAGCC 60.202 52.381 7.72 0.00 42.20 4.35
1707 2799 2.614057 GCCTCATTCCTGTCCATTTACG 59.386 50.000 0.00 0.00 0.00 3.18
1739 2831 3.282021 TGTTGCCTTGGATGATAGCTTC 58.718 45.455 0.00 0.00 0.00 3.86
1797 2889 1.676006 ACCAAGTTGCAGTTGCTGTAC 59.324 47.619 5.62 1.77 42.66 2.90
1810 2902 4.156556 AGTTGCTGTACTATGTTGCCAATG 59.843 41.667 0.00 0.00 0.00 2.82
1819 2911 9.104965 TGTACTATGTTGCCAATGTATAAGTTC 57.895 33.333 0.00 0.00 0.00 3.01
1831 2923 6.949352 ATGTATAAGTTCCCTTGCAAGATG 57.051 37.500 28.05 17.53 31.89 2.90
1839 2931 1.308069 CCTTGCAAGATGGTGACCCG 61.308 60.000 28.05 2.79 0.00 5.28
1871 2963 3.489355 TGTAGTTCCTCACTGGACGTTA 58.511 45.455 0.00 0.00 46.14 3.18
1875 2967 3.444388 AGTTCCTCACTGGACGTTAGATC 59.556 47.826 7.64 0.00 46.14 2.75
1892 2984 7.543172 ACGTTAGATCGTGTTATGTGTTATGTT 59.457 33.333 0.00 0.00 42.56 2.71
1899 2991 6.312672 TCGTGTTATGTGTTATGTTGATGGAG 59.687 38.462 0.00 0.00 0.00 3.86
1927 3019 6.153851 TCCGTTGGAGATATTTTCAGAGTGTA 59.846 38.462 0.00 0.00 0.00 2.90
2207 3300 8.611654 AAAATCCAGAAATATTTATGCCATGC 57.388 30.769 15.81 0.00 0.00 4.06
2208 3301 5.726980 TCCAGAAATATTTATGCCATGCC 57.273 39.130 15.81 0.00 0.00 4.40
2209 3302 4.527816 TCCAGAAATATTTATGCCATGCCC 59.472 41.667 15.81 0.00 0.00 5.36
2269 3392 2.431057 AGTGGTTCATAGGCTTCTACGG 59.569 50.000 0.00 0.00 0.00 4.02
2318 3447 7.886338 AGAGCTTCTTAATTTTACACAAAGGG 58.114 34.615 0.00 0.00 0.00 3.95
2319 3448 6.993079 AGCTTCTTAATTTTACACAAAGGGG 58.007 36.000 0.00 0.00 0.00 4.79
2320 3449 6.014584 AGCTTCTTAATTTTACACAAAGGGGG 60.015 38.462 0.00 0.00 0.00 5.40
2321 3450 6.014925 GCTTCTTAATTTTACACAAAGGGGGA 60.015 38.462 0.00 0.00 0.00 4.81
2322 3451 7.533289 TTCTTAATTTTACACAAAGGGGGAG 57.467 36.000 0.00 0.00 0.00 4.30
2323 3452 6.014012 TCTTAATTTTACACAAAGGGGGAGG 58.986 40.000 0.00 0.00 0.00 4.30
2338 3467 0.249405 GGAGGATTCTGCAGCTCTCG 60.249 60.000 9.47 0.00 0.00 4.04
2700 3914 8.454106 TCTCTGCTTCAACTAATGCTATTTTTC 58.546 33.333 0.00 0.00 0.00 2.29
3004 4220 4.000988 CGTAGATTTGTTTGTGCCCTAGT 58.999 43.478 0.00 0.00 0.00 2.57
3005 4221 4.142902 CGTAGATTTGTTTGTGCCCTAGTG 60.143 45.833 0.00 0.00 0.00 2.74
3008 4224 1.588674 TTGTTTGTGCCCTAGTGTCG 58.411 50.000 0.00 0.00 0.00 4.35
3092 4308 6.855763 ATCCTTCATAAACTCATTTGCCAA 57.144 33.333 0.00 0.00 0.00 4.52
3110 4326 2.490903 CCAATTCCTGCTCTTCAACCTG 59.509 50.000 0.00 0.00 0.00 4.00
3219 4441 4.563786 GGAACTGTCTAGGGAACTCCTTTG 60.564 50.000 0.00 0.00 45.47 2.77
3220 4442 3.588569 ACTGTCTAGGGAACTCCTTTGT 58.411 45.455 0.00 0.00 45.47 2.83
3278 4500 8.658499 GTTTTAAGAAAACTGTAGGAGAGTCA 57.342 34.615 7.42 0.00 45.55 3.41
3564 4788 5.570320 AGTATTCCTGTTTTGTGTAGCCAT 58.430 37.500 0.00 0.00 0.00 4.40
3567 4791 3.561143 TCCTGTTTTGTGTAGCCATGTT 58.439 40.909 0.00 0.00 0.00 2.71
3991 5239 3.645687 AGGCAGGGAATCTATCAGACTTC 59.354 47.826 0.00 0.00 0.00 3.01
4057 5305 3.386237 ACTCTGCGGGAGGTGAGC 61.386 66.667 10.53 0.00 45.83 4.26
4303 5555 5.235305 ACCAATCGTGTTATTTGCATCTC 57.765 39.130 0.00 0.00 0.00 2.75
4384 5636 4.143543 TGAGCCTGTTTCATTGATGTTCA 58.856 39.130 0.00 0.00 0.00 3.18
4457 5709 0.975887 AAATGCATGCGGGGAAAAGT 59.024 45.000 14.09 0.00 0.00 2.66
5018 6520 5.513233 ACTGGCAGGAAGTCAATTCATAAT 58.487 37.500 20.34 0.00 39.91 1.28
5188 6690 3.146847 GTTGTTTCACCTCCTACCAAGG 58.853 50.000 0.00 0.00 45.21 3.61
5395 6901 7.327214 ACTCAGGATTGATTCTTAGTGACTTC 58.673 38.462 0.00 0.00 31.68 3.01
5413 6919 7.039504 AGTGACTTCCAATGATGTTGCTTAATT 60.040 33.333 0.00 0.00 0.00 1.40
5453 6960 8.565896 TTTTCTTGCATCTGTGTGTATTAGAT 57.434 30.769 0.00 0.00 0.00 1.98
5604 7111 3.243359 TCTCCACCTTTGCCATTCTTT 57.757 42.857 0.00 0.00 0.00 2.52
5646 7153 4.919774 TCCTGTTGATAGTTTTGGGCTA 57.080 40.909 0.00 0.00 0.00 3.93
5706 7213 0.967380 GGTTGCCAGCAGCCAGTTAT 60.967 55.000 19.29 0.00 45.06 1.89
5858 7366 1.115930 AGAGAACCATCGCGGCCTAT 61.116 55.000 6.13 0.00 39.03 2.57
5867 7375 1.153449 CGCGGCCTATCCAACTTGA 60.153 57.895 0.00 0.00 34.01 3.02
5971 7479 3.582647 ACTGATATTCGGATATGGCACCA 59.417 43.478 0.00 0.00 0.00 4.17
5972 7480 4.225942 ACTGATATTCGGATATGGCACCAT 59.774 41.667 0.00 7.45 40.19 3.55
5973 7481 5.425217 ACTGATATTCGGATATGGCACCATA 59.575 40.000 11.68 11.68 42.28 2.74
5976 7484 8.028652 TGATATTCGGATATGGCACCATATTA 57.971 34.615 20.46 10.79 46.16 0.98
5999 7520 5.554822 TTCTGTTAGTTTGACACACAACC 57.445 39.130 0.00 0.00 38.29 3.77
6054 7586 4.410400 GCAACCGGGCAGTAGGCT 62.410 66.667 6.32 0.00 44.01 4.58
6064 7596 4.262721 CCGGGCAGTAGGCTTATATTTGTA 60.263 45.833 0.00 0.00 44.01 2.41
6232 8177 4.454728 TGATAATTGCTTTTGGACCAGC 57.545 40.909 0.00 0.00 36.49 4.85
6267 8218 1.883275 CCTGTAATTGTTGCCGTTCCA 59.117 47.619 0.00 0.00 0.00 3.53
6314 8265 6.820656 ACAGCTATTTGGACTGAATTAGACAG 59.179 38.462 0.00 0.00 40.68 3.51
6433 8384 3.205282 TCAGACCCCTGATAGATCTGACA 59.795 47.826 5.18 4.56 44.01 3.58
6434 8385 3.573538 CAGACCCCTGATAGATCTGACAG 59.426 52.174 18.09 18.09 43.02 3.51
6490 8448 2.692041 AGGAATGCTAAGAATGCAAGGC 59.308 45.455 0.00 0.00 44.01 4.35
6536 8494 4.943093 TCTGCAATAATCTTAGCAACTGCA 59.057 37.500 4.22 0.00 45.16 4.41
6632 8591 9.722056 GTAAAATGCAACAGTAGAAGATATTGG 57.278 33.333 0.00 0.00 0.00 3.16
6683 8642 7.919091 CGATTGTAAGTGTAAGTATCTAAGCCA 59.081 37.037 0.00 0.00 0.00 4.75
6737 8697 5.601729 TGTCAGAGCTCCAATAGATTCAGAT 59.398 40.000 10.93 0.00 0.00 2.90
6783 8743 4.167892 ACATGGCCCCTGAGTGATATTAAA 59.832 41.667 0.00 0.00 0.00 1.52
6827 8811 4.648307 ACTACTATACCCTGCCAACAGTAC 59.352 45.833 0.00 0.00 42.81 2.73
6831 8815 1.375523 CCCTGCCAACAGTACGGAC 60.376 63.158 0.00 0.00 42.81 4.79
6859 8846 4.273480 TGCGAGAAAATAAGGAGCATAAGC 59.727 41.667 0.00 0.00 42.56 3.09
6865 8852 9.224267 GAGAAAATAAGGAGCATAAGCATGATA 57.776 33.333 0.00 0.00 45.49 2.15
6873 8860 8.544687 AGGAGCATAAGCATGATACTATGATA 57.455 34.615 6.81 0.00 45.49 2.15
6874 8861 8.420222 AGGAGCATAAGCATGATACTATGATAC 58.580 37.037 6.81 1.67 45.49 2.24
6878 8865 7.515841 GCATAAGCATGATACTATGATACGTGC 60.516 40.741 6.81 0.00 41.77 5.34
6893 8880 0.307760 CGTGCGCCTTCCCATTTATC 59.692 55.000 4.18 0.00 0.00 1.75
6902 8889 3.316308 CCTTCCCATTTATCTTTGGCTCG 59.684 47.826 0.00 0.00 0.00 5.03
6998 9000 5.455872 CTTGTACTCTCAATAGGGGGTCTA 58.544 45.833 0.00 0.00 0.00 2.59
7023 9025 4.712337 AGTAGATTCAGGGTTGAGGTACAG 59.288 45.833 0.00 0.00 34.15 2.74
7036 9038 5.923733 TGAGGTACAGAAAAGAGGAGATC 57.076 43.478 0.00 0.00 0.00 2.75
7095 9097 7.172342 TGCTTTTATGTTGGTACCTATTCACT 58.828 34.615 14.36 0.00 0.00 3.41
7115 9117 9.606631 ATTCACTTTAATCTGTCTTGATAGTCC 57.393 33.333 0.00 0.00 0.00 3.85
7128 9130 8.807118 TGTCTTGATAGTCCTCCACATAATATC 58.193 37.037 0.00 0.00 0.00 1.63
7174 9188 9.008965 ACATGCACTTTTTGTATCTATTGTGTA 57.991 29.630 0.00 0.00 0.00 2.90
7242 9256 2.587522 AGTTTTTCTGGTGAGCCCTTC 58.412 47.619 0.00 0.00 0.00 3.46
7248 9262 4.447138 TTCTGGTGAGCCCTTCTTTTTA 57.553 40.909 0.00 0.00 0.00 1.52
7249 9263 4.021102 TCTGGTGAGCCCTTCTTTTTAG 57.979 45.455 0.00 0.00 0.00 1.85
7251 9265 2.445525 TGGTGAGCCCTTCTTTTTAGGT 59.554 45.455 0.00 0.00 0.00 3.08
7252 9266 2.820197 GGTGAGCCCTTCTTTTTAGGTG 59.180 50.000 0.00 0.00 0.00 4.00
7254 9268 3.502595 GTGAGCCCTTCTTTTTAGGTGAC 59.497 47.826 0.00 0.00 0.00 3.67
7263 9280 2.163818 TTTTAGGTGACAGTGAGGCG 57.836 50.000 0.00 0.00 0.00 5.52
7285 9302 5.661458 CGTTATCAGTTTCTGTGGACCTAT 58.339 41.667 0.00 0.00 32.61 2.57
7286 9303 6.682113 GCGTTATCAGTTTCTGTGGACCTATA 60.682 42.308 0.00 0.00 32.61 1.31
7287 9304 7.262772 CGTTATCAGTTTCTGTGGACCTATAA 58.737 38.462 0.00 0.00 32.61 0.98
7389 9419 2.079925 GTGGACTTGACAAGCTCATCC 58.920 52.381 15.24 14.08 30.97 3.51
7571 9601 3.321968 AGCAGCAGATACCAACGATGATA 59.678 43.478 0.00 0.00 0.00 2.15
7596 9626 0.107654 GAATCCCTTCGGACCACCAG 60.108 60.000 0.00 0.00 42.48 4.00
7852 9889 6.532302 TGTGTAACGATATGTGTATTCGCTTT 59.468 34.615 0.00 0.00 42.39 3.51
7988 10028 3.291162 GAGTATTTCGCTCGTTCTTGC 57.709 47.619 0.00 0.00 0.00 4.01
8013 10055 3.026694 GGCTGTTTAATTGCCATCTCCT 58.973 45.455 8.44 0.00 45.46 3.69
8014 10056 3.067320 GGCTGTTTAATTGCCATCTCCTC 59.933 47.826 8.44 0.00 45.46 3.71
8047 10175 3.238438 CCATCCTCCTGGCCTCAG 58.762 66.667 3.32 0.00 40.59 3.35
8056 10184 1.004080 CTGGCCTCAGTGTGGAGTG 60.004 63.158 15.46 0.07 36.30 3.51
8065 10193 2.562738 TCAGTGTGGAGTGTGGAGTATG 59.437 50.000 0.00 0.00 0.00 2.39
8066 10194 1.902508 AGTGTGGAGTGTGGAGTATGG 59.097 52.381 0.00 0.00 0.00 2.74
8067 10195 1.899814 GTGTGGAGTGTGGAGTATGGA 59.100 52.381 0.00 0.00 0.00 3.41
8068 10196 2.093973 GTGTGGAGTGTGGAGTATGGAG 60.094 54.545 0.00 0.00 0.00 3.86
8069 10197 2.225267 TGTGGAGTGTGGAGTATGGAGA 60.225 50.000 0.00 0.00 0.00 3.71
8070 10198 3.034635 GTGGAGTGTGGAGTATGGAGAT 58.965 50.000 0.00 0.00 0.00 2.75
8071 10199 4.215908 GTGGAGTGTGGAGTATGGAGATA 58.784 47.826 0.00 0.00 0.00 1.98
8072 10200 4.279671 GTGGAGTGTGGAGTATGGAGATAG 59.720 50.000 0.00 0.00 0.00 2.08
8073 10201 4.079154 TGGAGTGTGGAGTATGGAGATAGT 60.079 45.833 0.00 0.00 0.00 2.12
8074 10202 4.279671 GGAGTGTGGAGTATGGAGATAGTG 59.720 50.000 0.00 0.00 0.00 2.74
8075 10203 4.873010 AGTGTGGAGTATGGAGATAGTGT 58.127 43.478 0.00 0.00 0.00 3.55
8082 10210 7.069578 GTGGAGTATGGAGATAGTGTTTCCTTA 59.930 40.741 0.00 0.00 32.12 2.69
8112 10243 2.238521 TCATGGAGTGTTTCCTTTGCC 58.761 47.619 0.00 0.00 46.92 4.52
8119 10258 1.021202 TGTTTCCTTTGCCGTGACTG 58.979 50.000 0.00 0.00 0.00 3.51
8159 10310 5.940470 CCTGGCTGAGTTATGTAAACTTTCT 59.060 40.000 0.00 0.00 0.00 2.52
8237 10388 6.363065 TGAAGTATCGGTAGGTAAGATGTCT 58.637 40.000 0.00 0.00 0.00 3.41
8238 10389 6.485984 TGAAGTATCGGTAGGTAAGATGTCTC 59.514 42.308 0.00 0.00 0.00 3.36
8291 10442 1.524621 GGGAGTGGTGCCGATCATG 60.525 63.158 0.00 0.00 0.00 3.07
8478 10630 4.570772 CCTAGCTATCGATCTACTCTGCTC 59.429 50.000 0.00 0.00 0.00 4.26
8503 10655 2.857152 GTGCTTGTCGTCTCATCTCATC 59.143 50.000 0.00 0.00 0.00 2.92
8504 10656 2.757314 TGCTTGTCGTCTCATCTCATCT 59.243 45.455 0.00 0.00 0.00 2.90
8505 10657 3.181492 TGCTTGTCGTCTCATCTCATCTC 60.181 47.826 0.00 0.00 0.00 2.75
8506 10658 3.181492 GCTTGTCGTCTCATCTCATCTCA 60.181 47.826 0.00 0.00 0.00 3.27
8508 10660 4.564940 TGTCGTCTCATCTCATCTCATG 57.435 45.455 0.00 0.00 0.00 3.07
8509 10661 3.317430 TGTCGTCTCATCTCATCTCATGG 59.683 47.826 0.00 0.00 0.00 3.66
8510 10662 2.889678 TCGTCTCATCTCATCTCATGGG 59.110 50.000 0.00 0.00 0.00 4.00
8511 10663 2.627221 CGTCTCATCTCATCTCATGGGT 59.373 50.000 0.00 0.00 31.00 4.51
8512 10664 3.069300 CGTCTCATCTCATCTCATGGGTT 59.931 47.826 0.00 0.00 31.00 4.11
8513 10665 4.279420 CGTCTCATCTCATCTCATGGGTTA 59.721 45.833 0.00 0.00 31.00 2.85
8514 10666 5.221322 CGTCTCATCTCATCTCATGGGTTAA 60.221 44.000 0.00 0.00 31.00 2.01
8515 10667 6.586344 GTCTCATCTCATCTCATGGGTTAAA 58.414 40.000 0.00 0.00 31.00 1.52
8516 10668 6.705381 GTCTCATCTCATCTCATGGGTTAAAG 59.295 42.308 0.00 0.00 31.00 1.85
8517 10669 6.612863 TCTCATCTCATCTCATGGGTTAAAGA 59.387 38.462 0.00 0.00 31.00 2.52
8518 10670 7.126268 TCTCATCTCATCTCATGGGTTAAAGAA 59.874 37.037 0.00 0.00 31.00 2.52
8519 10671 7.278135 TCATCTCATCTCATGGGTTAAAGAAG 58.722 38.462 0.00 0.00 31.00 2.85
8561 10713 4.328440 CAGAAGAATCTTCAACACTAGCGG 59.672 45.833 23.20 0.00 32.03 5.52
8596 10754 1.893786 CCTCGTGAGAAGTCCCCAG 59.106 63.158 0.00 0.00 41.32 4.45
8659 10822 2.038557 AGTTTGTGTAGCCCTGTAGGTG 59.961 50.000 0.00 0.00 38.26 4.00
8678 10841 1.616628 GTGGTGGGAGGGTGGATCT 60.617 63.158 0.00 0.00 0.00 2.75
8679 10842 1.306997 TGGTGGGAGGGTGGATCTC 60.307 63.158 0.00 0.00 0.00 2.75
8681 10844 1.341156 GGTGGGAGGGTGGATCTCTG 61.341 65.000 0.00 0.00 0.00 3.35
8682 10845 1.003442 TGGGAGGGTGGATCTCTGG 59.997 63.158 0.00 0.00 0.00 3.86
8684 10847 1.690633 GGAGGGTGGATCTCTGGCA 60.691 63.158 0.00 0.00 0.00 4.92
8725 10904 2.202987 GGCTCCAGTCAGGCATCG 60.203 66.667 0.00 0.00 38.83 3.84
8788 10983 1.956170 CAAGAAGCTGTGCCGTCGT 60.956 57.895 0.00 0.00 0.00 4.34
8789 10984 1.664965 AAGAAGCTGTGCCGTCGTC 60.665 57.895 0.00 0.00 0.00 4.20
8802 10997 3.449227 TCGTCGCCTCGGCTTGAT 61.449 61.111 6.35 0.00 39.32 2.57
8803 10998 2.509336 CGTCGCCTCGGCTTGATT 60.509 61.111 6.35 0.00 39.32 2.57
8804 10999 2.517450 CGTCGCCTCGGCTTGATTC 61.517 63.158 6.35 0.00 39.32 2.52
8860 11057 0.179045 ATCGCTGCCTCGGCTAAAAT 60.179 50.000 9.65 0.00 42.51 1.82
8871 11068 0.108186 GGCTAAAATTGGCAGCACCC 60.108 55.000 3.89 0.00 37.02 4.61
8911 11108 1.289109 CCGTGAAAGCACCACTACGG 61.289 60.000 0.00 0.00 43.93 4.02
8929 11126 7.441017 CACTACGGTATACTACTACTTCTCCT 58.559 42.308 2.25 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.621193 ACGAGCCCACTATAAAATGCTTAT 58.379 37.500 0.00 0.00 0.00 1.73
40 41 4.335594 AGAAACGAGCCCACTATAAAATGC 59.664 41.667 0.00 0.00 0.00 3.56
42 43 5.589050 GGAAGAAACGAGCCCACTATAAAAT 59.411 40.000 0.00 0.00 0.00 1.82
43 44 4.939439 GGAAGAAACGAGCCCACTATAAAA 59.061 41.667 0.00 0.00 0.00 1.52
46 47 2.433239 GGGAAGAAACGAGCCCACTATA 59.567 50.000 0.00 0.00 40.39 1.31
59 60 0.608035 GATGTGCGGTGGGGAAGAAA 60.608 55.000 0.00 0.00 0.00 2.52
107 108 1.341209 CCTCGGATGATGTCGATTGGA 59.659 52.381 0.00 0.00 34.77 3.53
124 125 1.468054 GGCATTGCAAACGATCACCTC 60.468 52.381 11.39 0.00 0.00 3.85
127 128 2.253603 GAAGGCATTGCAAACGATCAC 58.746 47.619 11.39 0.00 0.00 3.06
128 129 1.885233 TGAAGGCATTGCAAACGATCA 59.115 42.857 11.39 2.17 0.00 2.92
132 133 2.664568 CTGAATGAAGGCATTGCAAACG 59.335 45.455 11.39 0.00 44.47 3.60
151 152 7.334171 TGGTTTCATTATGACACTGACATACTG 59.666 37.037 10.73 10.56 34.48 2.74
180 181 2.513317 TGGAATGCAAGGGGACATATGA 59.487 45.455 10.38 0.00 0.00 2.15
195 196 6.432783 TCATACTAACCCAAAGTTGTGGAATG 59.567 38.462 5.86 0.00 41.65 2.67
219 220 1.263776 CGAATCTCTGTGACGCACTC 58.736 55.000 10.54 0.04 35.11 3.51
220 221 0.109086 CCGAATCTCTGTGACGCACT 60.109 55.000 10.54 0.00 35.11 4.40
226 227 1.136774 CGCGACCGAATCTCTGTGA 59.863 57.895 0.00 0.00 36.29 3.58
229 230 1.189403 GTAACGCGACCGAATCTCTG 58.811 55.000 15.93 0.00 38.29 3.35
230 231 1.063764 GAGTAACGCGACCGAATCTCT 59.936 52.381 15.93 0.00 38.29 3.10
345 509 9.131791 GTTTTCAGGATTTATATGGCCTCTTTA 57.868 33.333 3.32 0.00 0.00 1.85
365 529 5.398603 AAGTGACACCAACAATGTTTTCA 57.601 34.783 0.84 0.00 0.00 2.69
394 558 9.354673 AGGAAGTAAGAAGTGATTTGATTTTGA 57.645 29.630 0.00 0.00 0.00 2.69
413 577 5.750352 AGTAATTTGGAACGGAGGAAGTA 57.250 39.130 0.00 0.00 0.00 2.24
414 578 4.635699 AGTAATTTGGAACGGAGGAAGT 57.364 40.909 0.00 0.00 0.00 3.01
416 580 4.453136 CGAAAGTAATTTGGAACGGAGGAA 59.547 41.667 0.00 0.00 0.00 3.36
417 581 3.998341 CGAAAGTAATTTGGAACGGAGGA 59.002 43.478 0.00 0.00 0.00 3.71
418 582 3.425758 GCGAAAGTAATTTGGAACGGAGG 60.426 47.826 1.64 0.00 0.00 4.30
419 583 3.187637 TGCGAAAGTAATTTGGAACGGAG 59.812 43.478 1.64 0.00 0.00 4.63
420 584 3.139850 TGCGAAAGTAATTTGGAACGGA 58.860 40.909 1.64 0.00 0.00 4.69
421 585 3.546002 TGCGAAAGTAATTTGGAACGG 57.454 42.857 1.64 0.00 0.00 4.44
422 586 4.472286 ACATGCGAAAGTAATTTGGAACG 58.528 39.130 1.64 0.00 0.00 3.95
423 587 6.472163 CCATACATGCGAAAGTAATTTGGAAC 59.528 38.462 1.64 0.00 0.00 3.62
424 588 6.375736 TCCATACATGCGAAAGTAATTTGGAA 59.624 34.615 1.64 0.00 0.00 3.53
425 589 5.883115 TCCATACATGCGAAAGTAATTTGGA 59.117 36.000 1.64 0.00 0.00 3.53
426 590 6.130298 TCCATACATGCGAAAGTAATTTGG 57.870 37.500 0.00 0.00 0.00 3.28
427 591 7.195646 ACATCCATACATGCGAAAGTAATTTG 58.804 34.615 0.00 0.00 0.00 2.32
428 592 7.333528 ACATCCATACATGCGAAAGTAATTT 57.666 32.000 0.00 0.00 0.00 1.82
429 593 6.942532 ACATCCATACATGCGAAAGTAATT 57.057 33.333 0.00 0.00 0.00 1.40
430 594 8.097038 AGATACATCCATACATGCGAAAGTAAT 58.903 33.333 0.00 0.00 0.00 1.89
431 595 7.441836 AGATACATCCATACATGCGAAAGTAA 58.558 34.615 0.00 0.00 0.00 2.24
432 596 6.993079 AGATACATCCATACATGCGAAAGTA 58.007 36.000 0.00 0.00 0.00 2.24
433 597 5.858381 AGATACATCCATACATGCGAAAGT 58.142 37.500 0.00 0.00 0.00 2.66
434 598 7.315890 TCTAGATACATCCATACATGCGAAAG 58.684 38.462 0.00 0.00 0.00 2.62
435 599 7.227049 TCTAGATACATCCATACATGCGAAA 57.773 36.000 0.00 0.00 0.00 3.46
436 600 6.834168 TCTAGATACATCCATACATGCGAA 57.166 37.500 0.00 0.00 0.00 4.70
437 601 6.681368 GCATCTAGATACATCCATACATGCGA 60.681 42.308 4.54 0.00 0.00 5.10
438 602 5.461407 GCATCTAGATACATCCATACATGCG 59.539 44.000 4.54 0.00 0.00 4.73
439 603 6.343703 TGCATCTAGATACATCCATACATGC 58.656 40.000 4.54 2.05 34.74 4.06
440 604 8.959705 AATGCATCTAGATACATCCATACATG 57.040 34.615 17.09 0.00 0.00 3.21
441 605 9.970553 AAAATGCATCTAGATACATCCATACAT 57.029 29.630 17.09 0.00 0.00 2.29
446 610 9.494271 GAACTAAAATGCATCTAGATACATCCA 57.506 33.333 17.09 6.45 0.00 3.41
447 611 9.717942 AGAACTAAAATGCATCTAGATACATCC 57.282 33.333 17.09 3.81 0.00 3.51
466 630 8.826710 CGCTGAAATGGATGTATTTAGAACTAA 58.173 33.333 0.00 0.00 30.78 2.24
467 631 8.201464 TCGCTGAAATGGATGTATTTAGAACTA 58.799 33.333 0.00 0.00 30.78 2.24
468 632 7.011482 GTCGCTGAAATGGATGTATTTAGAACT 59.989 37.037 0.00 0.00 30.78 3.01
469 633 7.126398 GTCGCTGAAATGGATGTATTTAGAAC 58.874 38.462 0.00 0.00 30.78 3.01
470 634 6.019075 CGTCGCTGAAATGGATGTATTTAGAA 60.019 38.462 0.00 0.00 30.78 2.10
471 635 5.462068 CGTCGCTGAAATGGATGTATTTAGA 59.538 40.000 0.00 0.00 30.78 2.10
472 636 5.462068 TCGTCGCTGAAATGGATGTATTTAG 59.538 40.000 0.00 0.00 30.78 1.85
473 637 5.353111 TCGTCGCTGAAATGGATGTATTTA 58.647 37.500 0.00 0.00 30.78 1.40
474 638 4.188462 TCGTCGCTGAAATGGATGTATTT 58.812 39.130 0.00 0.00 33.19 1.40
475 639 3.792401 TCGTCGCTGAAATGGATGTATT 58.208 40.909 0.00 0.00 0.00 1.89
476 640 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
477 641 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
478 642 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
479 643 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
480 644 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
481 645 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
482 646 4.600012 AAATTACTCGTCGCTGAAATGG 57.400 40.909 0.00 0.00 0.00 3.16
483 647 6.569228 TCTAAATTACTCGTCGCTGAAATG 57.431 37.500 0.00 0.00 0.00 2.32
484 648 7.772332 ATTCTAAATTACTCGTCGCTGAAAT 57.228 32.000 0.00 0.00 0.00 2.17
485 649 8.186163 TCTATTCTAAATTACTCGTCGCTGAAA 58.814 33.333 0.00 0.00 0.00 2.69
486 650 7.700505 TCTATTCTAAATTACTCGTCGCTGAA 58.299 34.615 0.00 0.00 0.00 3.02
487 651 7.255491 TCTATTCTAAATTACTCGTCGCTGA 57.745 36.000 0.00 0.00 0.00 4.26
488 652 6.579292 CCTCTATTCTAAATTACTCGTCGCTG 59.421 42.308 0.00 0.00 0.00 5.18
489 653 6.294065 CCCTCTATTCTAAATTACTCGTCGCT 60.294 42.308 0.00 0.00 0.00 4.93
490 654 5.857517 CCCTCTATTCTAAATTACTCGTCGC 59.142 44.000 0.00 0.00 0.00 5.19
491 655 7.041235 ACTCCCTCTATTCTAAATTACTCGTCG 60.041 40.741 0.00 0.00 0.00 5.12
492 656 8.168790 ACTCCCTCTATTCTAAATTACTCGTC 57.831 38.462 0.00 0.00 0.00 4.20
493 657 9.065798 GTACTCCCTCTATTCTAAATTACTCGT 57.934 37.037 0.00 0.00 0.00 4.18
494 658 8.229137 CGTACTCCCTCTATTCTAAATTACTCG 58.771 40.741 0.00 0.00 0.00 4.18
495 659 9.065798 ACGTACTCCCTCTATTCTAAATTACTC 57.934 37.037 0.00 0.00 0.00 2.59
496 660 8.993404 ACGTACTCCCTCTATTCTAAATTACT 57.007 34.615 0.00 0.00 0.00 2.24
499 663 8.755977 TCAAACGTACTCCCTCTATTCTAAATT 58.244 33.333 0.00 0.00 0.00 1.82
500 664 8.302515 TCAAACGTACTCCCTCTATTCTAAAT 57.697 34.615 0.00 0.00 0.00 1.40
501 665 7.707624 TCAAACGTACTCCCTCTATTCTAAA 57.292 36.000 0.00 0.00 0.00 1.85
502 666 7.707624 TTCAAACGTACTCCCTCTATTCTAA 57.292 36.000 0.00 0.00 0.00 2.10
503 667 7.893124 ATTCAAACGTACTCCCTCTATTCTA 57.107 36.000 0.00 0.00 0.00 2.10
504 668 6.793505 ATTCAAACGTACTCCCTCTATTCT 57.206 37.500 0.00 0.00 0.00 2.40
505 669 8.358148 TCATATTCAAACGTACTCCCTCTATTC 58.642 37.037 0.00 0.00 0.00 1.75
506 670 8.246430 TCATATTCAAACGTACTCCCTCTATT 57.754 34.615 0.00 0.00 0.00 1.73
507 671 7.834881 TCATATTCAAACGTACTCCCTCTAT 57.165 36.000 0.00 0.00 0.00 1.98
508 672 7.504574 TCATCATATTCAAACGTACTCCCTCTA 59.495 37.037 0.00 0.00 0.00 2.43
509 673 6.323996 TCATCATATTCAAACGTACTCCCTCT 59.676 38.462 0.00 0.00 0.00 3.69
510 674 6.513180 TCATCATATTCAAACGTACTCCCTC 58.487 40.000 0.00 0.00 0.00 4.30
511 675 6.098409 ACTCATCATATTCAAACGTACTCCCT 59.902 38.462 0.00 0.00 0.00 4.20
512 676 6.201044 CACTCATCATATTCAAACGTACTCCC 59.799 42.308 0.00 0.00 0.00 4.30
513 677 6.757010 ACACTCATCATATTCAAACGTACTCC 59.243 38.462 0.00 0.00 0.00 3.85
514 678 7.757097 ACACTCATCATATTCAAACGTACTC 57.243 36.000 0.00 0.00 0.00 2.59
515 679 9.302345 CTTACACTCATCATATTCAAACGTACT 57.698 33.333 0.00 0.00 0.00 2.73
516 680 8.540492 CCTTACACTCATCATATTCAAACGTAC 58.460 37.037 0.00 0.00 0.00 3.67
517 681 8.255206 ACCTTACACTCATCATATTCAAACGTA 58.745 33.333 0.00 0.00 0.00 3.57
518 682 7.103641 ACCTTACACTCATCATATTCAAACGT 58.896 34.615 0.00 0.00 0.00 3.99
519 683 7.539712 ACCTTACACTCATCATATTCAAACG 57.460 36.000 0.00 0.00 0.00 3.60
520 684 9.378551 TGTACCTTACACTCATCATATTCAAAC 57.621 33.333 0.00 0.00 32.89 2.93
534 698 4.282703 AGTGTCCGAAATGTACCTTACACT 59.717 41.667 9.89 9.89 42.23 3.55
542 706 6.705782 CACATCAATAGTGTCCGAAATGTAC 58.294 40.000 0.00 0.00 32.44 2.90
551 715 4.194640 ACTGATGCACATCAATAGTGTCC 58.805 43.478 13.91 0.00 46.10 4.02
567 732 6.872020 CGGGGGTAGTACATATTTTACTGATG 59.128 42.308 2.06 0.00 31.99 3.07
572 737 7.225341 CAGAAACGGGGGTAGTACATATTTTAC 59.775 40.741 2.06 0.00 0.00 2.01
581 746 3.900966 ATTCAGAAACGGGGGTAGTAC 57.099 47.619 0.00 0.00 0.00 2.73
587 752 8.909923 AGTTTATAAAATATTCAGAAACGGGGG 58.090 33.333 0.00 0.00 32.07 5.40
588 753 9.730420 CAGTTTATAAAATATTCAGAAACGGGG 57.270 33.333 0.00 5.62 32.07 5.73
616 940 9.321562 CTCCGTTGCTAAATATAAGGAGTTTTA 57.678 33.333 0.00 0.00 39.19 1.52
622 946 4.657039 ACCCTCCGTTGCTAAATATAAGGA 59.343 41.667 0.00 0.00 0.00 3.36
635 959 4.219288 ACTTTACTAGTACACCCTCCGTTG 59.781 45.833 0.91 0.00 34.56 4.10
663 987 6.398234 TTGTGTTAGGAGCTAAAATTGCAA 57.602 33.333 0.00 0.00 0.00 4.08
677 1030 5.753744 TGCAACTCGTAAATTTGTGTTAGG 58.246 37.500 0.00 0.00 0.00 2.69
678 1031 5.851177 CCTGCAACTCGTAAATTTGTGTTAG 59.149 40.000 0.00 0.00 0.00 2.34
713 1066 0.970640 ATGTTGCCCCCGTTTTTACC 59.029 50.000 0.00 0.00 0.00 2.85
745 1098 1.397343 GGAAGGTTCGAGAAATTCCGC 59.603 52.381 12.43 0.00 32.36 5.54
906 1262 4.935495 ACAGTGCGTGTGGCCTGG 62.935 66.667 3.32 0.00 41.45 4.45
1042 1399 1.604147 CCATTTTCGTGCCCCTTCCC 61.604 60.000 0.00 0.00 0.00 3.97
1045 1402 2.635443 CGCCATTTTCGTGCCCCTT 61.635 57.895 0.00 0.00 0.00 3.95
1304 1662 5.602628 TCCTACAAAAACAAAAATTCCCCG 58.397 37.500 0.00 0.00 0.00 5.73
1479 1942 4.371417 TACGAGCCTCCCACCCGT 62.371 66.667 0.00 0.00 37.27 5.28
1480 1943 3.528370 CTACGAGCCTCCCACCCG 61.528 72.222 0.00 0.00 0.00 5.28
1533 2625 1.974265 TCAATCAAACACCAGCCGAA 58.026 45.000 0.00 0.00 0.00 4.30
1534 2626 2.083774 GATCAATCAAACACCAGCCGA 58.916 47.619 0.00 0.00 0.00 5.54
1535 2627 1.202065 CGATCAATCAAACACCAGCCG 60.202 52.381 0.00 0.00 0.00 5.52
1536 2628 1.812571 ACGATCAATCAAACACCAGCC 59.187 47.619 0.00 0.00 0.00 4.85
1554 2646 0.179111 ACCACACAGAGACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
1688 2780 3.873910 ACCGTAAATGGACAGGAATGAG 58.126 45.455 0.00 0.00 0.00 2.90
1707 2799 3.006752 TCCAAGGCAACATCATGAAAACC 59.993 43.478 0.00 0.00 41.41 3.27
1778 2870 1.949525 AGTACAGCAACTGCAACTTGG 59.050 47.619 4.22 0.00 45.16 3.61
1779 2871 4.214119 ACATAGTACAGCAACTGCAACTTG 59.786 41.667 4.22 7.92 45.16 3.16
1797 2889 6.772716 AGGGAACTTATACATTGGCAACATAG 59.227 38.462 0.00 0.00 44.47 2.23
1819 2911 0.967380 GGGTCACCATCTTGCAAGGG 60.967 60.000 25.73 21.16 36.50 3.95
1831 2923 0.538746 AACAACCAATCCGGGTCACC 60.539 55.000 0.00 0.00 41.32 4.02
1839 2931 4.215613 GTGAGGAACTACAACAACCAATCC 59.784 45.833 0.00 0.00 41.55 3.01
1871 2963 7.011389 CCATCAACATAACACATAACACGATCT 59.989 37.037 0.00 0.00 0.00 2.75
1875 2967 6.092122 ACTCCATCAACATAACACATAACACG 59.908 38.462 0.00 0.00 0.00 4.49
1892 2984 1.974957 TCTCCAACGGAAACTCCATCA 59.025 47.619 0.00 0.00 35.91 3.07
1899 2991 6.371825 ACTCTGAAAATATCTCCAACGGAAAC 59.628 38.462 0.00 0.00 0.00 2.78
1927 3019 8.691661 AAACAGTACTAACATTTTCAGTCCAT 57.308 30.769 0.00 0.00 0.00 3.41
1982 3075 1.547372 ACACATTTGGCTCCAGCATTC 59.453 47.619 0.03 0.00 44.36 2.67
2219 3342 2.486982 TCTTCAGTGCTACCTGTACGTC 59.513 50.000 0.00 0.00 36.37 4.34
2269 3392 1.605712 CGAAATGTAGGATCGCCCTCC 60.606 57.143 0.00 0.00 43.31 4.30
2318 3447 0.106521 GAGAGCTGCAGAATCCTCCC 59.893 60.000 20.43 0.92 0.00 4.30
2319 3448 0.249405 CGAGAGCTGCAGAATCCTCC 60.249 60.000 20.43 7.54 0.00 4.30
2320 3449 0.743688 TCGAGAGCTGCAGAATCCTC 59.256 55.000 20.43 14.29 0.00 3.71
2321 3450 1.134848 GTTCGAGAGCTGCAGAATCCT 60.135 52.381 20.43 4.25 0.00 3.24
2322 3451 1.134848 AGTTCGAGAGCTGCAGAATCC 60.135 52.381 20.43 7.68 0.00 3.01
2323 3452 2.292103 AGTTCGAGAGCTGCAGAATC 57.708 50.000 20.43 14.56 0.00 2.52
2338 3467 4.249661 GACTGGAGTCATCCTTGAAGTTC 58.750 47.826 1.75 0.00 46.80 3.01
2700 3914 2.093447 GGTTCTACTGTGTCCCTGATGG 60.093 54.545 0.00 0.00 0.00 3.51
3092 4308 2.641815 AGACAGGTTGAAGAGCAGGAAT 59.358 45.455 0.00 0.00 0.00 3.01
3110 4326 6.316390 CCCACTTTCACCAATATCAGTAAGAC 59.684 42.308 0.00 0.00 0.00 3.01
3219 4441 5.891451 AGGTGCAAACTGAAGAGTTAAAAC 58.109 37.500 0.00 0.00 41.87 2.43
3220 4442 6.071616 ACAAGGTGCAAACTGAAGAGTTAAAA 60.072 34.615 0.00 0.00 41.87 1.52
3278 4500 0.253044 TAGAAAGGCAAGGCGCAGAT 59.747 50.000 10.83 0.00 45.17 2.90
3448 4670 3.650139 AGATGTCTTACGGTCAACACAC 58.350 45.455 0.00 0.00 0.00 3.82
3586 4810 9.857656 ACTCCATCAGTCAAATCAACATATAAT 57.142 29.630 0.00 0.00 0.00 1.28
3588 4812 8.485392 TCACTCCATCAGTCAAATCAACATATA 58.515 33.333 0.00 0.00 30.26 0.86
3683 4931 6.838198 TCGACAAGGTTAATAATTCCATCG 57.162 37.500 0.00 0.00 0.00 3.84
3991 5239 8.487028 AGTTCTAGACCCCTACAATTTTCATAG 58.513 37.037 0.00 0.00 0.00 2.23
4057 5305 4.223320 AGATTAACAACCAGCACAAACG 57.777 40.909 0.00 0.00 0.00 3.60
4116 5367 4.264352 TGGTGGCTGAGGGAAATTTCTTAT 60.264 41.667 17.42 4.32 0.00 1.73
4303 5555 5.334724 ACACAATAGGTCCCTAAACTACG 57.665 43.478 0.00 0.00 31.73 3.51
4391 5643 4.418973 ACTGCAGATTCTATCATGCTGT 57.581 40.909 23.35 3.18 38.90 4.40
4457 5709 6.821665 GGACCAGTAGTGCATTTTAGTATTGA 59.178 38.462 0.00 0.00 36.67 2.57
4907 6409 9.656040 AAATTTATGTATGTTGATGTGCATGTT 57.344 25.926 0.00 0.00 0.00 2.71
5103 6605 2.497675 CCTTTCCTCTTCGACAGGATCA 59.502 50.000 12.21 3.37 39.91 2.92
5188 6690 1.089920 CCAGTATCAGCCACAACAGC 58.910 55.000 0.00 0.00 0.00 4.40
5443 6950 5.801350 TGAAGTGCTTGCATCTAATACAC 57.199 39.130 0.00 0.00 0.00 2.90
5453 6960 1.134753 CCAGTTGTTGAAGTGCTTGCA 59.865 47.619 0.00 0.00 31.90 4.08
5646 7153 1.808411 AACGAGCAACGATGACCAAT 58.192 45.000 10.05 0.00 45.77 3.16
5706 7213 4.647399 CCCAGGAAAACCTAAAAACAGACA 59.353 41.667 0.00 0.00 0.00 3.41
5833 7341 1.202417 CCGCGATGGTTCTCTACATGT 60.202 52.381 8.23 2.69 0.00 3.21
5867 7375 1.995376 ACAAAGCCTTTCGTCCCAAT 58.005 45.000 0.00 0.00 0.00 3.16
5875 7383 5.751243 TCTCTACAACAACAAAGCCTTTC 57.249 39.130 0.00 0.00 0.00 2.62
5973 7481 8.349983 GGTTGTGTGTCAAACTAACAGAATAAT 58.650 33.333 9.34 0.00 40.30 1.28
5974 7482 7.201750 GGGTTGTGTGTCAAACTAACAGAATAA 60.202 37.037 9.34 0.00 42.79 1.40
5976 7484 5.067283 GGGTTGTGTGTCAAACTAACAGAAT 59.933 40.000 9.34 0.00 42.79 2.40
5999 7520 7.612677 ACTTGTTATACACTACTTTCAGAGGG 58.387 38.462 0.00 0.00 0.00 4.30
6054 7586 9.537192 CATAACTCACCGTCCTTACAAATATAA 57.463 33.333 0.00 0.00 0.00 0.98
6064 7596 3.864921 GCAGAACATAACTCACCGTCCTT 60.865 47.826 0.00 0.00 0.00 3.36
6232 8177 7.250569 ACAATTACAGGCATCAACGAAAATAG 58.749 34.615 0.00 0.00 0.00 1.73
6267 8218 7.066284 GCTGTAATTTGTATGGTGACTCAAGAT 59.934 37.037 0.00 0.00 0.00 2.40
6314 8265 3.631686 TGTCATTGGTATAATGCAGGCAC 59.368 43.478 0.00 0.00 0.00 5.01
6433 8384 8.305046 AGTTCAGCTACTATTTCTGAATCTCT 57.695 34.615 7.10 0.00 45.17 3.10
6434 8385 9.677567 CTAGTTCAGCTACTATTTCTGAATCTC 57.322 37.037 7.10 0.00 45.17 2.75
6490 8448 9.184523 CAGAGATATAGTAGAAACTCCCCATAG 57.815 40.741 0.00 0.00 37.15 2.23
6632 8591 6.238130 GGTGACTAGAGTTTAATTCAATCGCC 60.238 42.308 0.00 0.00 0.00 5.54
6683 8642 0.389948 GGGCGAGAACAAGATCACGT 60.390 55.000 0.00 0.00 36.09 4.49
6711 8671 4.141846 TGAATCTATTGGAGCTCTGACACC 60.142 45.833 14.64 0.00 0.00 4.16
6713 8673 4.958581 TCTGAATCTATTGGAGCTCTGACA 59.041 41.667 14.64 0.00 0.00 3.58
6783 8743 7.931948 AGTAGTTTACACATAGAAGTTGTGCTT 59.068 33.333 3.85 0.00 46.65 3.91
6807 8767 2.429610 CGTACTGTTGGCAGGGTATAGT 59.570 50.000 0.00 0.00 46.62 2.12
6827 8811 1.156736 ATTTTCTCGCACAAGGTCCG 58.843 50.000 0.00 0.00 0.00 4.79
6831 8815 3.181506 GCTCCTTATTTTCTCGCACAAGG 60.182 47.826 0.00 0.00 35.01 3.61
6842 8826 8.930846 AGTATCATGCTTATGCTCCTTATTTT 57.069 30.769 1.96 0.00 40.48 1.82
6859 8846 3.547868 GGCGCACGTATCATAGTATCATG 59.452 47.826 10.83 0.00 0.00 3.07
6865 8852 1.269621 GGAAGGCGCACGTATCATAGT 60.270 52.381 10.83 0.00 0.00 2.12
6873 8860 0.393808 ATAAATGGGAAGGCGCACGT 60.394 50.000 10.83 0.00 39.97 4.49
6874 8861 0.307760 GATAAATGGGAAGGCGCACG 59.692 55.000 10.83 0.00 39.97 5.34
6878 8865 2.223805 GCCAAAGATAAATGGGAAGGCG 60.224 50.000 0.00 0.00 37.19 5.52
6893 8880 6.238211 CCAGAAGAATTATACACGAGCCAAAG 60.238 42.308 0.00 0.00 0.00 2.77
6902 8889 6.924060 AGACATACGCCAGAAGAATTATACAC 59.076 38.462 0.00 0.00 0.00 2.90
6966 8965 7.333672 CCCTATTGAGAGTACAAGGTGTAAAAC 59.666 40.741 0.00 0.00 34.21 2.43
6998 9000 5.546499 TGTACCTCAACCCTGAATCTACTTT 59.454 40.000 0.00 0.00 0.00 2.66
7023 9025 7.445707 ACAGTAAAAACTGGATCTCCTCTTTTC 59.554 37.037 10.08 0.00 41.76 2.29
7095 9097 7.180229 TGTGGAGGACTATCAAGACAGATTAAA 59.820 37.037 0.00 0.00 0.00 1.52
7115 9117 7.611770 TCCGGTTTAGATGATATTATGTGGAG 58.388 38.462 0.00 0.00 0.00 3.86
7128 9130 7.041440 TGCATGTTATAACATCCGGTTTAGATG 60.041 37.037 24.99 13.69 46.10 2.90
7242 9256 2.480419 CGCCTCACTGTCACCTAAAAAG 59.520 50.000 0.00 0.00 0.00 2.27
7248 9262 1.204941 GATAACGCCTCACTGTCACCT 59.795 52.381 0.00 0.00 0.00 4.00
7249 9263 1.067142 TGATAACGCCTCACTGTCACC 60.067 52.381 0.00 0.00 0.00 4.02
7251 9265 1.893137 ACTGATAACGCCTCACTGTCA 59.107 47.619 0.00 0.00 0.00 3.58
7252 9266 2.656560 ACTGATAACGCCTCACTGTC 57.343 50.000 0.00 0.00 0.00 3.51
7254 9268 3.369147 CAGAAACTGATAACGCCTCACTG 59.631 47.826 0.00 0.00 32.44 3.66
7295 9320 9.346725 GCTTCACCAAATAAACTAGAAATTCAG 57.653 33.333 0.00 0.00 0.00 3.02
7306 9331 5.705609 TGAAGGAGCTTCACCAAATAAAC 57.294 39.130 0.00 0.00 44.27 2.01
7340 9367 4.941263 TGCAGATAGTGGCGAAATTTAAGT 59.059 37.500 0.00 0.00 0.00 2.24
7351 9378 1.153086 CCACCCTGCAGATAGTGGC 60.153 63.158 26.97 0.00 43.02 5.01
7359 9389 1.601759 CAAGTCCACCACCCTGCAG 60.602 63.158 6.78 6.78 0.00 4.41
7389 9419 3.474600 CCTCATCATAAAGGCTGTCCAG 58.525 50.000 0.00 0.00 33.74 3.86
7596 9626 3.869272 CGGATGCTGCGGCTGAAC 61.869 66.667 20.27 7.13 39.59 3.18
7623 9659 0.890683 AATGGGTTTACTGCTGCAGC 59.109 50.000 31.89 31.89 42.50 5.25
7673 9709 1.879380 TGCTGTTGCGAGTTATTTGCT 59.121 42.857 0.00 0.00 43.34 3.91
7727 9763 1.119684 TAGCTCCTCGCCTATTGCAA 58.880 50.000 0.00 0.00 41.33 4.08
7852 9889 4.314440 GCAGAGTCCCGTGTGCCA 62.314 66.667 0.00 0.00 0.00 4.92
8047 10175 1.899814 TCCATACTCCACACTCCACAC 59.100 52.381 0.00 0.00 0.00 3.82
8056 10184 5.364157 AGGAAACACTATCTCCATACTCCAC 59.636 44.000 0.00 0.00 0.00 4.02
8065 10193 7.291411 TCATAGCTAAGGAAACACTATCTCC 57.709 40.000 0.00 0.00 0.00 3.71
8071 10199 8.099537 CCATGATATCATAGCTAAGGAAACACT 58.900 37.037 17.77 0.00 34.26 3.55
8072 10200 8.097038 TCCATGATATCATAGCTAAGGAAACAC 58.903 37.037 17.77 0.00 34.26 3.32
8073 10201 8.206126 TCCATGATATCATAGCTAAGGAAACA 57.794 34.615 17.77 2.21 34.26 2.83
8074 10202 8.317679 ACTCCATGATATCATAGCTAAGGAAAC 58.682 37.037 17.77 0.00 34.26 2.78
8075 10203 8.316946 CACTCCATGATATCATAGCTAAGGAAA 58.683 37.037 17.77 0.00 34.26 3.13
8082 10210 6.471146 GGAAACACTCCATGATATCATAGCT 58.529 40.000 17.77 0.00 44.67 3.32
8112 10243 0.792640 GTTCAGCCATCACAGTCACG 59.207 55.000 0.00 0.00 0.00 4.35
8119 10258 2.843701 CCAGGATAGTTCAGCCATCAC 58.156 52.381 0.00 0.00 33.97 3.06
8159 10310 2.164338 GGTTTATTTTGGACAGCCGGA 58.836 47.619 5.05 0.00 36.79 5.14
8261 10412 0.244994 CCACTCCCTTGTGAGTCTCG 59.755 60.000 0.00 0.00 43.63 4.04
8291 10442 0.947244 CAGTCACTGGTCCTTGCAAC 59.053 55.000 0.00 0.00 0.00 4.17
8478 10630 1.125021 GATGAGACGACAAGCACGTTG 59.875 52.381 0.00 0.00 43.97 4.10
8503 10655 6.207417 TGCTTTTCTCTTCTTTAACCCATGAG 59.793 38.462 0.00 0.00 0.00 2.90
8504 10656 6.068010 TGCTTTTCTCTTCTTTAACCCATGA 58.932 36.000 0.00 0.00 0.00 3.07
8505 10657 6.331369 TGCTTTTCTCTTCTTTAACCCATG 57.669 37.500 0.00 0.00 0.00 3.66
8506 10658 6.551227 AGTTGCTTTTCTCTTCTTTAACCCAT 59.449 34.615 0.00 0.00 0.00 4.00
8508 10660 6.039382 TCAGTTGCTTTTCTCTTCTTTAACCC 59.961 38.462 0.00 0.00 0.00 4.11
8509 10661 6.913132 GTCAGTTGCTTTTCTCTTCTTTAACC 59.087 38.462 0.00 0.00 0.00 2.85
8510 10662 7.472543 TGTCAGTTGCTTTTCTCTTCTTTAAC 58.527 34.615 0.00 0.00 0.00 2.01
8511 10663 7.552687 TCTGTCAGTTGCTTTTCTCTTCTTTAA 59.447 33.333 0.00 0.00 0.00 1.52
8512 10664 7.011482 GTCTGTCAGTTGCTTTTCTCTTCTTTA 59.989 37.037 0.00 0.00 0.00 1.85
8513 10665 5.882557 TCTGTCAGTTGCTTTTCTCTTCTTT 59.117 36.000 0.00 0.00 0.00 2.52
8514 10666 5.295540 GTCTGTCAGTTGCTTTTCTCTTCTT 59.704 40.000 0.00 0.00 0.00 2.52
8515 10667 4.813697 GTCTGTCAGTTGCTTTTCTCTTCT 59.186 41.667 0.00 0.00 0.00 2.85
8516 10668 4.572389 TGTCTGTCAGTTGCTTTTCTCTTC 59.428 41.667 0.00 0.00 0.00 2.87
8517 10669 4.517285 TGTCTGTCAGTTGCTTTTCTCTT 58.483 39.130 0.00 0.00 0.00 2.85
8518 10670 4.125703 CTGTCTGTCAGTTGCTTTTCTCT 58.874 43.478 0.00 0.00 39.17 3.10
8519 10671 4.122776 TCTGTCTGTCAGTTGCTTTTCTC 58.877 43.478 0.00 0.00 43.97 2.87
8596 10754 3.771577 AGCCATGTTATGTAGGTAGGC 57.228 47.619 0.00 0.00 41.08 3.93
8659 10822 2.614013 ATCCACCCTCCCACCACC 60.614 66.667 0.00 0.00 0.00 4.61
8678 10841 2.745698 CTGCTCACCTGTGCCAGA 59.254 61.111 10.39 0.00 34.10 3.86
8679 10842 2.359602 CCTGCTCACCTGTGCCAG 60.360 66.667 9.43 9.43 33.96 4.85
8681 10844 2.670934 CACCTGCTCACCTGTGCC 60.671 66.667 0.00 0.00 33.96 5.01
8682 10845 0.607489 ATTCACCTGCTCACCTGTGC 60.607 55.000 0.00 0.00 35.32 4.57
8684 10847 1.277557 GAGATTCACCTGCTCACCTGT 59.722 52.381 0.00 0.00 0.00 4.00
8725 10904 1.712977 CGATCTGGGCAAGCTCAAGC 61.713 60.000 0.00 0.00 42.49 4.01
8842 11039 0.392461 AATTTTAGCCGAGGCAGCGA 60.392 50.000 17.18 0.00 44.88 4.93
8860 11057 2.594303 CGTTGAGGGTGCTGCCAA 60.594 61.111 0.00 0.00 39.65 4.52
8871 11068 2.504244 GAGGGCGTCGACGTTGAG 60.504 66.667 35.48 11.31 42.22 3.02
8911 11108 5.048573 GCTGGCAGGAGAAGTAGTAGTATAC 60.049 48.000 17.64 0.00 43.47 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.