Multiple sequence alignment - TraesCS1A01G369600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G369600 chr1A 100.000 6750 0 0 1 6750 547304537 547297788 0.000000e+00 12466.0
1 TraesCS1A01G369600 chr1A 86.061 165 18 4 6181 6343 25426181 25426020 9.000000e-39 172.0
2 TraesCS1A01G369600 chr1D 89.784 2134 123 43 4041 6152 452428686 452430746 0.000000e+00 2645.0
3 TraesCS1A01G369600 chr1D 91.170 1846 112 23 4010 5836 452480001 452478188 0.000000e+00 2459.0
4 TraesCS1A01G369600 chr1D 91.118 1824 105 32 4041 5848 452457772 452455990 0.000000e+00 2418.0
5 TraesCS1A01G369600 chr1D 90.698 1505 74 36 2506 3976 452481635 452480163 0.000000e+00 1943.0
6 TraesCS1A01G369600 chr1D 84.272 2149 111 87 409 2481 452483628 452481631 0.000000e+00 1886.0
7 TraesCS1A01G369600 chr1D 91.875 320 17 5 1676 1989 232575891 232575575 8.040000e-119 438.0
8 TraesCS1A01G369600 chr1D 91.875 320 17 6 1676 1989 289024880 289024564 8.040000e-119 438.0
9 TraesCS1A01G369600 chr1D 83.166 499 49 18 3239 3723 452427872 452428349 2.250000e-114 424.0
10 TraesCS1A01G369600 chr1D 83.166 499 49 19 3239 3723 452458586 452458109 2.250000e-114 424.0
11 TraesCS1A01G369600 chr1D 80.469 512 43 26 2004 2481 289024372 289023884 8.390000e-89 339.0
12 TraesCS1A01G369600 chr1D 89.734 263 19 7 3733 3991 452428432 452428690 5.050000e-86 329.0
13 TraesCS1A01G369600 chr1D 89.734 263 19 7 3733 3991 452458026 452457768 5.050000e-86 329.0
14 TraesCS1A01G369600 chr1D 89.575 259 15 8 5896 6145 452478180 452477925 1.090000e-82 318.0
15 TraesCS1A01G369600 chr1D 79.297 512 44 27 2004 2481 51461721 51461238 1.100000e-77 302.0
16 TraesCS1A01G369600 chr1D 79.297 512 44 27 2004 2481 232575383 232574900 1.100000e-77 302.0
17 TraesCS1A01G369600 chr1D 84.407 295 17 7 6192 6466 452432292 452432577 5.190000e-66 263.0
18 TraesCS1A01G369600 chr1D 91.026 156 7 3 65 216 452484006 452483854 3.190000e-48 204.0
19 TraesCS1A01G369600 chr1D 93.382 136 8 1 6616 6750 452442883 452443018 4.130000e-47 200.0
20 TraesCS1A01G369600 chr1D 87.975 158 5 7 260 413 452483851 452483704 2.500000e-39 174.0
21 TraesCS1A01G369600 chr1D 87.013 154 14 6 5961 6112 452455937 452455788 1.160000e-37 169.0
22 TraesCS1A01G369600 chr1D 89.130 92 10 0 6469 6560 452442792 452442883 1.540000e-21 115.0
23 TraesCS1A01G369600 chr1D 96.154 52 0 1 6153 6202 452420646 452420697 4.340000e-12 84.2
24 TraesCS1A01G369600 chr1D 96.154 52 0 1 6153 6202 452465808 452465757 4.340000e-12 84.2
25 TraesCS1A01G369600 chr1B 92.987 1711 84 23 3767 5462 622468384 622466695 0.000000e+00 2462.0
26 TraesCS1A01G369600 chr1B 89.139 1510 91 43 2195 3666 622469917 622468443 0.000000e+00 1812.0
27 TraesCS1A01G369600 chr1B 90.046 653 48 11 5510 6151 622466681 622466035 0.000000e+00 830.0
28 TraesCS1A01G369600 chr1B 83.130 984 58 43 425 1383 622471953 622471053 0.000000e+00 798.0
29 TraesCS1A01G369600 chr1B 89.452 493 26 13 1514 1994 622470927 622470449 3.480000e-167 599.0
30 TraesCS1A01G369600 chr1B 82.508 606 49 24 6192 6750 622464514 622463919 4.740000e-131 479.0
31 TraesCS1A01G369600 chr1B 87.346 324 30 6 2 317 622472436 622472116 1.790000e-95 361.0
32 TraesCS1A01G369600 chr1B 90.647 139 11 2 1987 2124 622470207 622470070 4.160000e-42 183.0
33 TraesCS1A01G369600 chr1B 83.553 152 22 3 6188 6336 300189393 300189242 9.130000e-29 139.0
34 TraesCS1A01G369600 chr1B 89.286 84 5 1 336 415 622472118 622472035 1.200000e-17 102.0
35 TraesCS1A01G369600 chr1B 94.444 54 1 1 6601 6654 471767728 471767779 1.560000e-11 82.4
36 TraesCS1A01G369600 chrUn 92.188 320 16 7 1676 1989 414412285 414411969 1.730000e-120 444.0
37 TraesCS1A01G369600 chrUn 91.875 320 17 7 1676 1989 95478709 95479025 8.040000e-119 438.0
38 TraesCS1A01G369600 chrUn 91.562 320 18 7 1676 1989 427984198 427983882 3.740000e-117 433.0
39 TraesCS1A01G369600 chrUn 79.492 512 43 27 2004 2481 95479217 95479700 2.360000e-79 307.0
40 TraesCS1A01G369600 chrUn 91.803 122 8 2 2004 2124 427983690 427983570 1.160000e-37 169.0
41 TraesCS1A01G369600 chr5D 92.188 320 16 7 1676 1989 522908806 522908490 1.730000e-120 444.0
42 TraesCS1A01G369600 chr5D 79.492 512 43 27 2004 2481 522908298 522907815 2.360000e-79 307.0
43 TraesCS1A01G369600 chr5D 98.077 52 1 0 6601 6652 549497625 549497676 2.590000e-14 91.6
44 TraesCS1A01G369600 chr5D 96.000 50 2 0 6606 6655 467251047 467251096 1.560000e-11 82.4
45 TraesCS1A01G369600 chr3D 92.188 320 16 7 1676 1989 71001098 71000782 1.730000e-120 444.0
46 TraesCS1A01G369600 chr3D 92.188 320 16 7 1676 1989 569425131 569424815 1.730000e-120 444.0
47 TraesCS1A01G369600 chr3D 92.188 320 16 7 1676 1989 574405489 574405805 1.730000e-120 444.0
48 TraesCS1A01G369600 chr3D 79.600 500 42 26 2004 2469 569424623 569424150 3.060000e-78 303.0
49 TraesCS1A01G369600 chr3D 87.975 158 16 3 6189 6344 19717956 19718112 4.160000e-42 183.0
50 TraesCS1A01G369600 chr3D 80.667 150 26 3 6197 6343 125122828 125122679 5.530000e-21 113.0
51 TraesCS1A01G369600 chr3D 92.000 50 4 0 5725 5774 327464703 327464654 3.380000e-08 71.3
52 TraesCS1A01G369600 chr3B 82.534 292 51 0 4690 4981 469768187 469767896 2.420000e-64 257.0
53 TraesCS1A01G369600 chr3B 85.714 161 20 3 6186 6344 31553667 31553826 4.190000e-37 167.0
54 TraesCS1A01G369600 chr3B 85.093 161 21 3 6186 6344 31564002 31564161 1.950000e-35 161.0
55 TraesCS1A01G369600 chr3B 84.277 159 22 3 6188 6344 31535987 31536144 1.170000e-32 152.0
56 TraesCS1A01G369600 chr2A 85.417 144 17 4 6189 6329 391544413 391544271 5.450000e-31 147.0
57 TraesCS1A01G369600 chr2A 92.727 55 4 0 6601 6655 410609607 410609553 5.610000e-11 80.5
58 TraesCS1A01G369600 chr3A 82.667 150 23 3 6197 6343 132899848 132899699 5.490000e-26 130.0
59 TraesCS1A01G369600 chr2D 96.154 52 2 0 6601 6652 321235748 321235697 1.210000e-12 86.1
60 TraesCS1A01G369600 chr2B 94.545 55 3 0 6601 6655 388952963 388953017 1.210000e-12 86.1
61 TraesCS1A01G369600 chr7B 92.593 54 4 0 6601 6654 99655144 99655197 2.020000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G369600 chr1A 547297788 547304537 6749 True 12466.000000 12466 100.000000 1 6750 1 chr1A.!!$R2 6749
1 TraesCS1A01G369600 chr1D 452477925 452484006 6081 True 1164.000000 2459 89.119333 65 6145 6 chr1D.!!$R6 6080
2 TraesCS1A01G369600 chr1D 452427872 452432577 4705 False 915.250000 2645 86.772750 3239 6466 4 chr1D.!!$F2 3227
3 TraesCS1A01G369600 chr1D 452455788 452458586 2798 True 835.000000 2418 87.757750 3239 6112 4 chr1D.!!$R5 2873
4 TraesCS1A01G369600 chr1D 289023884 289024880 996 True 388.500000 438 86.172000 1676 2481 2 chr1D.!!$R4 805
5 TraesCS1A01G369600 chr1D 232574900 232575891 991 True 370.000000 438 85.586000 1676 2481 2 chr1D.!!$R3 805
6 TraesCS1A01G369600 chr1B 622463919 622472436 8517 True 847.333333 2462 88.282333 2 6750 9 chr1B.!!$R2 6748
7 TraesCS1A01G369600 chrUn 95478709 95479700 991 False 372.500000 438 85.683500 1676 2481 2 chrUn.!!$F1 805
8 TraesCS1A01G369600 chrUn 427983570 427984198 628 True 301.000000 433 91.682500 1676 2124 2 chrUn.!!$R2 448
9 TraesCS1A01G369600 chr5D 522907815 522908806 991 True 375.500000 444 85.840000 1676 2481 2 chr5D.!!$R1 805
10 TraesCS1A01G369600 chr3D 569424150 569425131 981 True 373.500000 444 85.894000 1676 2469 2 chr3D.!!$R4 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 537 0.250513 ACACCCGATCCAAGAGAAGC 59.749 55.0 0.00 0.0 0.0 3.86 F
622 747 0.454285 GCACACACACACACACACAC 60.454 55.0 0.00 0.0 0.0 3.82 F
2433 3030 0.324645 ATGGCATCCACCCCACTTTC 60.325 55.0 0.00 0.0 35.8 2.62 F
3095 3739 0.971959 AGAGACTGGCAGAGCTGGAG 60.972 60.0 23.66 0.0 0.0 3.86 F
3855 4626 0.036010 AATCCTGCTTCCACCAGTCG 60.036 55.0 0.00 0.0 0.0 4.18 F
4539 5444 0.179004 ATGAGCGTGTGTTTGGGGAA 60.179 50.0 0.00 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2712 0.037303 CAAGTGGATGGTGCTGAGGT 59.963 55.000 0.00 0.00 0.00 3.85 R
2519 3119 1.271840 TGACCATGGTGCCCCTCTAC 61.272 60.000 25.52 4.63 0.00 2.59 R
3470 4137 0.307760 CCTCGTTCTGCAACAACACC 59.692 55.000 8.51 0.00 32.14 4.16 R
4539 5444 1.065709 CCACCGGTGCTAACATAACCT 60.066 52.381 29.75 0.00 0.00 3.50 R
5542 6474 0.037326 ACGACCGTGATGCTCATGTT 60.037 50.000 0.00 0.00 31.62 2.71 R
5841 6777 0.102120 CAACACACGGCCACAACATT 59.898 50.000 2.24 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.300620 GTGACACACGGCACTGCTA 60.301 57.895 0.00 0.00 32.44 3.49
34 36 1.982395 ACACGGCACTGCTAGGCTA 60.982 57.895 0.00 0.00 0.00 3.93
44 46 4.833390 CACTGCTAGGCTAGGTAAAACTT 58.167 43.478 22.40 0.00 0.00 2.66
45 47 4.870991 CACTGCTAGGCTAGGTAAAACTTC 59.129 45.833 22.40 3.64 0.00 3.01
46 48 4.081031 ACTGCTAGGCTAGGTAAAACTTCC 60.081 45.833 22.40 2.94 0.00 3.46
48 50 3.118847 GCTAGGCTAGGTAAAACTTCCGT 60.119 47.826 22.40 0.00 0.00 4.69
63 69 3.838795 CGTCGTAAGCGCCAGTGC 61.839 66.667 2.29 0.00 38.14 4.40
250 268 4.200283 CTCGCCTCGCCACCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
252 270 3.842923 CGCCTCGCCACCTCTCAT 61.843 66.667 0.00 0.00 0.00 2.90
253 271 2.107953 GCCTCGCCACCTCTCATC 59.892 66.667 0.00 0.00 0.00 2.92
325 343 0.321122 GCACCACCAACCAGAGAGAG 60.321 60.000 0.00 0.00 0.00 3.20
326 344 1.342074 CACCACCAACCAGAGAGAGA 58.658 55.000 0.00 0.00 0.00 3.10
327 345 1.274728 CACCACCAACCAGAGAGAGAG 59.725 57.143 0.00 0.00 0.00 3.20
328 346 1.148027 ACCACCAACCAGAGAGAGAGA 59.852 52.381 0.00 0.00 0.00 3.10
329 347 1.824230 CCACCAACCAGAGAGAGAGAG 59.176 57.143 0.00 0.00 0.00 3.20
330 348 2.556336 CCACCAACCAGAGAGAGAGAGA 60.556 54.545 0.00 0.00 0.00 3.10
331 349 2.754552 CACCAACCAGAGAGAGAGAGAG 59.245 54.545 0.00 0.00 0.00 3.20
332 350 2.647299 ACCAACCAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
333 351 3.282021 CCAACCAGAGAGAGAGAGAGAG 58.718 54.545 0.00 0.00 0.00 3.20
334 352 3.054434 CCAACCAGAGAGAGAGAGAGAGA 60.054 52.174 0.00 0.00 0.00 3.10
344 362 3.056891 AGAGAGAGAGAGAAACAAAGGCG 60.057 47.826 0.00 0.00 0.00 5.52
346 364 1.971357 AGAGAGAGAAACAAAGGCGGA 59.029 47.619 0.00 0.00 0.00 5.54
432 537 0.250513 ACACCCGATCCAAGAGAAGC 59.749 55.000 0.00 0.00 0.00 3.86
493 610 3.626680 TTCGCTTCGTCCTCGCCAG 62.627 63.158 0.00 0.00 36.96 4.85
494 611 4.421479 CGCTTCGTCCTCGCCAGT 62.421 66.667 0.00 0.00 36.96 4.00
495 612 2.507324 GCTTCGTCCTCGCCAGTC 60.507 66.667 0.00 0.00 36.96 3.51
496 613 2.202492 CTTCGTCCTCGCCAGTCG 60.202 66.667 0.00 0.00 40.15 4.18
497 614 4.415332 TTCGTCCTCGCCAGTCGC 62.415 66.667 0.00 0.00 38.27 5.19
600 725 3.282157 AGCAACCGCACAGCACAG 61.282 61.111 0.00 0.00 42.27 3.66
601 726 4.332637 GCAACCGCACAGCACAGG 62.333 66.667 0.00 0.00 38.36 4.00
612 737 4.612536 GCACAGGCGCACACACAC 62.613 66.667 10.83 0.00 0.00 3.82
613 738 3.201297 CACAGGCGCACACACACA 61.201 61.111 10.83 0.00 0.00 3.72
614 739 3.202001 ACAGGCGCACACACACAC 61.202 61.111 10.83 0.00 0.00 3.82
615 740 3.201297 CAGGCGCACACACACACA 61.201 61.111 10.83 0.00 0.00 3.72
616 741 3.202001 AGGCGCACACACACACAC 61.202 61.111 10.83 0.00 0.00 3.82
617 742 3.504273 GGCGCACACACACACACA 61.504 61.111 10.83 0.00 0.00 3.72
618 743 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
619 744 3.033166 GCGCACACACACACACACA 62.033 57.895 0.30 0.00 0.00 3.72
620 745 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
621 746 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
622 747 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
623 748 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
624 749 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
625 750 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
626 751 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
627 752 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
628 753 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
629 754 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
630 755 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
631 756 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
632 757 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
633 758 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
634 759 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
635 760 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
636 761 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
637 762 1.155889 CACACACACACACACACACT 58.844 50.000 0.00 0.00 0.00 3.55
638 763 1.128507 CACACACACACACACACACTC 59.871 52.381 0.00 0.00 0.00 3.51
639 764 1.001974 ACACACACACACACACACTCT 59.998 47.619 0.00 0.00 0.00 3.24
646 771 2.497675 ACACACACACACTCTCTCTTGT 59.502 45.455 0.00 0.00 0.00 3.16
672 799 3.338126 CTCCCTGGTCGTTCGGTCG 62.338 68.421 0.00 0.00 0.00 4.79
674 801 4.052229 CCTGGTCGTTCGGTCGCT 62.052 66.667 0.00 0.00 0.00 4.93
675 802 2.504244 CTGGTCGTTCGGTCGCTC 60.504 66.667 0.00 0.00 0.00 5.03
676 803 4.394078 TGGTCGTTCGGTCGCTCG 62.394 66.667 0.00 0.00 0.00 5.03
677 804 4.395583 GGTCGTTCGGTCGCTCGT 62.396 66.667 0.00 0.00 0.00 4.18
678 805 2.428071 GTCGTTCGGTCGCTCGTT 60.428 61.111 0.00 0.00 0.00 3.85
679 806 2.127118 TCGTTCGGTCGCTCGTTC 60.127 61.111 0.00 0.00 0.00 3.95
680 807 2.427905 CGTTCGGTCGCTCGTTCA 60.428 61.111 0.00 0.00 0.00 3.18
681 808 2.426183 CGTTCGGTCGCTCGTTCAG 61.426 63.158 0.00 0.00 0.00 3.02
682 809 1.081641 GTTCGGTCGCTCGTTCAGA 60.082 57.895 0.00 0.00 0.00 3.27
716 854 4.382541 TCCTCCTCCTCCGCAGCA 62.383 66.667 0.00 0.00 0.00 4.41
741 879 4.699522 GCGTCGGGCAGGAGGTTT 62.700 66.667 0.00 0.00 42.87 3.27
742 880 2.434359 CGTCGGGCAGGAGGTTTC 60.434 66.667 0.00 0.00 0.00 2.78
743 881 2.046217 GTCGGGCAGGAGGTTTCC 60.046 66.667 0.00 0.00 44.39 3.13
751 889 2.184579 GGAGGTTTCCGGCTCTCG 59.815 66.667 0.00 0.00 32.79 4.04
752 890 2.348888 GGAGGTTTCCGGCTCTCGA 61.349 63.158 0.00 0.00 42.43 4.04
850 988 2.577593 GTCGAGGGCGCCTAAACT 59.422 61.111 28.56 15.32 37.46 2.66
904 1058 5.049398 TCTTAACAACAAACACACACCAC 57.951 39.130 0.00 0.00 0.00 4.16
912 1066 1.089481 AACACACACCACAGCTCACG 61.089 55.000 0.00 0.00 0.00 4.35
932 1086 1.332904 GCTCACACCTTTGAAACGACG 60.333 52.381 0.00 0.00 0.00 5.12
935 1089 0.925466 ACACCTTTGAAACGACGACG 59.075 50.000 5.58 5.58 45.75 5.12
940 1094 1.216941 TTTGAAACGACGACGCTCCC 61.217 55.000 7.30 0.00 43.96 4.30
941 1095 2.808321 GAAACGACGACGCTCCCC 60.808 66.667 7.30 0.00 43.96 4.81
942 1096 4.368543 AAACGACGACGCTCCCCC 62.369 66.667 7.30 0.00 43.96 5.40
1020 1182 1.736645 GGACACCATCACCGTCGTG 60.737 63.158 0.00 0.00 41.72 4.35
1046 1208 1.451936 GTAAGCCCATGCCGGATCT 59.548 57.895 5.05 0.00 38.69 2.75
1051 1213 2.502492 CCCATGCCGGATCTCGTCT 61.502 63.158 5.05 0.00 36.56 4.18
1069 1251 1.202203 CTTTGTTGTTCGTCGTCGGA 58.798 50.000 1.55 0.00 37.69 4.55
1070 1252 0.922717 TTTGTTGTTCGTCGTCGGAC 59.077 50.000 6.54 6.54 44.94 4.79
1088 1270 3.799755 GGTGATGCCGGCGTTGAC 61.800 66.667 24.75 21.20 0.00 3.18
1099 1281 1.683790 GGCGTTGACGAACCTCGATG 61.684 60.000 7.85 0.00 43.74 3.84
1118 1300 2.033448 TGTGGCCGATGGGTTGAC 59.967 61.111 0.00 0.00 34.97 3.18
1261 1451 2.726351 CGACAAGGAGGAGAGGCCC 61.726 68.421 0.00 0.00 37.37 5.80
1269 1459 2.287264 GAGGAGAGGCCCGAGGTACT 62.287 65.000 0.00 0.00 38.89 2.73
1278 1468 2.757314 GGCCCGAGGTACTGTATATACC 59.243 54.545 10.38 0.00 41.55 2.73
1298 1488 4.338879 ACCACCAATCATCCTTCTTCTTG 58.661 43.478 0.00 0.00 0.00 3.02
1340 1530 1.517242 CTGCCAGATTAATCTCGCCC 58.483 55.000 26.01 11.62 39.81 6.13
1347 1537 4.499183 CAGATTAATCTCGCCCTACATCC 58.501 47.826 15.24 0.00 34.22 3.51
1377 1567 1.179814 AGGATCCTCGCCGTACATCC 61.180 60.000 9.02 0.00 34.30 3.51
1378 1568 1.461091 GGATCCTCGCCGTACATCCA 61.461 60.000 3.84 0.00 34.27 3.41
1419 1638 0.951558 GTGGCACGGACACAAGAAAT 59.048 50.000 0.00 0.00 41.94 2.17
1477 1696 1.343789 TGGGTGGTCATTTTCGTACGA 59.656 47.619 15.28 15.28 0.00 3.43
1483 1702 4.203764 GTGGTCATTTTCGTACGATCGTAG 59.796 45.833 27.44 19.96 0.00 3.51
1485 1704 5.064579 TGGTCATTTTCGTACGATCGTAGTA 59.935 40.000 27.44 15.74 0.00 1.82
1487 1706 6.188175 GTCATTTTCGTACGATCGTAGTACT 58.812 40.000 27.44 8.44 41.51 2.73
1488 1707 6.138236 GTCATTTTCGTACGATCGTAGTACTG 59.862 42.308 27.44 18.44 41.51 2.74
1489 1708 5.530519 TTTTCGTACGATCGTAGTACTGT 57.469 39.130 27.44 1.78 41.51 3.55
1490 1709 5.530519 TTTCGTACGATCGTAGTACTGTT 57.469 39.130 27.44 1.00 41.51 3.16
1491 1710 5.530519 TTCGTACGATCGTAGTACTGTTT 57.469 39.130 27.44 0.21 41.51 2.83
1492 1711 5.530519 TCGTACGATCGTAGTACTGTTTT 57.469 39.130 27.44 0.00 41.51 2.43
1493 1712 5.927030 TCGTACGATCGTAGTACTGTTTTT 58.073 37.500 27.44 0.00 41.51 1.94
1619 1843 4.675029 CGGGTGGCCGAGAACGTT 62.675 66.667 0.00 0.00 37.88 3.99
1620 1844 2.658422 GGGTGGCCGAGAACGTTA 59.342 61.111 0.00 0.00 37.88 3.18
1621 1845 1.739196 GGGTGGCCGAGAACGTTAC 60.739 63.158 0.00 0.00 37.88 2.50
1626 1850 1.612950 TGGCCGAGAACGTTACTAACA 59.387 47.619 0.00 0.00 37.88 2.41
1657 1881 2.439701 CCAGAGGCCCACATGCTG 60.440 66.667 0.00 0.00 0.00 4.41
1662 1886 1.188863 GAGGCCCACATGCTGAAAAT 58.811 50.000 0.00 0.00 0.00 1.82
1663 1887 1.551883 GAGGCCCACATGCTGAAAATT 59.448 47.619 0.00 0.00 0.00 1.82
1664 1888 2.760092 GAGGCCCACATGCTGAAAATTA 59.240 45.455 0.00 0.00 0.00 1.40
1665 1889 3.377573 AGGCCCACATGCTGAAAATTAT 58.622 40.909 0.00 0.00 0.00 1.28
1666 1890 3.776417 AGGCCCACATGCTGAAAATTATT 59.224 39.130 0.00 0.00 0.00 1.40
1667 1891 4.961730 AGGCCCACATGCTGAAAATTATTA 59.038 37.500 0.00 0.00 0.00 0.98
1668 1892 5.603813 AGGCCCACATGCTGAAAATTATTAT 59.396 36.000 0.00 0.00 0.00 1.28
1842 2075 5.068636 TGATAGGTAGTTATCTGTCGGGTC 58.931 45.833 0.00 0.00 32.44 4.46
1873 2106 3.259123 CAGCAGGGCTAAATCACCTTTTT 59.741 43.478 0.00 0.00 36.40 1.94
1940 2177 1.510480 GCTGCTATGTGGGGAATCGC 61.510 60.000 0.00 0.00 0.00 4.58
1942 2179 1.961277 GCTATGTGGGGAATCGCCG 60.961 63.158 11.82 0.00 39.47 6.46
2058 2555 2.853003 GGCTAGTCAAGTCGTCGAATTC 59.147 50.000 4.72 0.00 0.00 2.17
2111 2609 2.025155 CTAGTGGACACGTGGAGCTAT 58.975 52.381 21.57 3.63 36.20 2.97
2137 2669 7.125204 TGGGTGCTACTACTATAAAATGACACT 59.875 37.037 0.00 0.00 0.00 3.55
2200 2732 1.310933 CCTCAGCACCATCCACTTGC 61.311 60.000 0.00 0.00 36.45 4.01
2249 2838 2.435805 ACTGAGCCTGAACTGAACTGAA 59.564 45.455 0.00 0.00 0.00 3.02
2250 2839 3.118261 ACTGAGCCTGAACTGAACTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
2292 2884 3.057969 TGCTCTGGTTTAGTGGATGTG 57.942 47.619 0.00 0.00 0.00 3.21
2304 2896 2.026262 AGTGGATGTGTATGTGGGGAAC 60.026 50.000 0.00 0.00 0.00 3.62
2324 2918 5.353394 AACTAAGTGAAAGTGAGTGGTGA 57.647 39.130 0.00 0.00 0.00 4.02
2335 2929 4.473444 AGTGAGTGGTGAAAATGTTGGAT 58.527 39.130 0.00 0.00 0.00 3.41
2358 2952 2.996631 ACAGAAGAGATTCATGGCCAC 58.003 47.619 8.16 0.00 0.00 5.01
2360 2954 3.053842 ACAGAAGAGATTCATGGCCACAT 60.054 43.478 8.16 0.00 37.99 3.21
2387 2981 3.806949 TTGGCACCTTACCATCTTCTT 57.193 42.857 0.00 0.00 36.96 2.52
2388 2982 3.350219 TGGCACCTTACCATCTTCTTC 57.650 47.619 0.00 0.00 30.29 2.87
2389 2983 2.912956 TGGCACCTTACCATCTTCTTCT 59.087 45.455 0.00 0.00 30.29 2.85
2390 2984 3.330701 TGGCACCTTACCATCTTCTTCTT 59.669 43.478 0.00 0.00 30.29 2.52
2391 2985 3.942115 GGCACCTTACCATCTTCTTCTTC 59.058 47.826 0.00 0.00 0.00 2.87
2392 2986 4.323868 GGCACCTTACCATCTTCTTCTTCT 60.324 45.833 0.00 0.00 0.00 2.85
2424 3021 3.511146 TCTTCTTCCAAAATGGCATCCAC 59.489 43.478 0.00 0.00 37.47 4.02
2433 3030 0.324645 ATGGCATCCACCCCACTTTC 60.325 55.000 0.00 0.00 35.80 2.62
2437 3034 1.896755 GCATCCACCCCACTTTCCATT 60.897 52.381 0.00 0.00 0.00 3.16
2453 3050 5.689383 TTCCATTAACAAGAACAGAGCAC 57.311 39.130 0.00 0.00 0.00 4.40
2482 3082 8.526218 AACGTCATATACAATGATCATCACTC 57.474 34.615 9.06 0.00 0.00 3.51
2501 3101 4.823442 CACTCCAGAAATATGCAGCCAATA 59.177 41.667 0.00 0.00 0.00 1.90
2503 3103 6.015688 CACTCCAGAAATATGCAGCCAATAAT 60.016 38.462 0.00 0.00 0.00 1.28
2519 3119 5.682862 GCCAATAATTATCACAAAGCAGTCG 59.317 40.000 0.00 0.00 0.00 4.18
2640 3251 2.300152 TGGCTCATAGTAGCTGCATACC 59.700 50.000 4.12 0.00 42.37 2.73
2728 3342 6.752351 CCGATTCCTCATATAAACTATCACCG 59.248 42.308 0.00 0.00 0.00 4.94
2857 3471 5.255687 TGGTGGTACCATATATATCGTCGT 58.744 41.667 19.72 0.00 44.79 4.34
2918 3560 4.056125 CCACTCTCACTCGCCGCA 62.056 66.667 0.00 0.00 0.00 5.69
2919 3561 2.807045 CACTCTCACTCGCCGCAC 60.807 66.667 0.00 0.00 0.00 5.34
2920 3562 4.057428 ACTCTCACTCGCCGCACC 62.057 66.667 0.00 0.00 0.00 5.01
2921 3563 4.056125 CTCTCACTCGCCGCACCA 62.056 66.667 0.00 0.00 0.00 4.17
2922 3564 4.357947 TCTCACTCGCCGCACCAC 62.358 66.667 0.00 0.00 0.00 4.16
2923 3565 4.363990 CTCACTCGCCGCACCACT 62.364 66.667 0.00 0.00 0.00 4.00
2924 3566 4.357947 TCACTCGCCGCACCACTC 62.358 66.667 0.00 0.00 0.00 3.51
2962 3606 2.702592 TCGAGAGAGAGAGAGGGAAC 57.297 55.000 0.00 0.00 34.84 3.62
3095 3739 0.971959 AGAGACTGGCAGAGCTGGAG 60.972 60.000 23.66 0.00 0.00 3.86
3138 3782 4.974438 AAGGGGTGGGTCGCTGGA 62.974 66.667 0.00 0.00 0.00 3.86
3139 3783 4.741239 AGGGGTGGGTCGCTGGAT 62.741 66.667 0.00 0.00 0.00 3.41
3140 3784 4.489771 GGGGTGGGTCGCTGGATG 62.490 72.222 0.00 0.00 0.00 3.51
3141 3785 4.489771 GGGTGGGTCGCTGGATGG 62.490 72.222 0.00 0.00 0.00 3.51
3142 3786 3.399181 GGTGGGTCGCTGGATGGA 61.399 66.667 0.00 0.00 0.00 3.41
3173 3817 5.652014 TCCATCCACCATGATTTGTCTAAAC 59.348 40.000 0.00 0.00 33.80 2.01
3183 3827 5.277825 TGATTTGTCTAAACTTTTGGCACG 58.722 37.500 0.00 0.00 0.00 5.34
3404 4064 1.268079 GGTGAGCTTTCTTGCCTCAAC 59.732 52.381 0.00 0.00 0.00 3.18
3425 4091 3.441572 ACAAACAGAGTCCATATGCTTGC 59.558 43.478 0.00 0.00 30.93 4.01
3470 4137 2.696409 ATCTGATCTGCTGCCGCTCG 62.696 60.000 0.70 0.00 36.97 5.03
3521 4188 4.080863 GGGGACATCTACAAGAACATCACT 60.081 45.833 0.00 0.00 0.00 3.41
3599 4266 0.603569 TCGTCTTCTCCAACTGGCTC 59.396 55.000 0.00 0.00 34.44 4.70
3641 4308 5.279056 CGAGGAGGTAATTAAGATCAGACCC 60.279 48.000 0.00 0.00 0.00 4.46
3677 4375 5.163814 GGCACTCATGATTACAGAAACAGAC 60.164 44.000 0.00 0.00 0.00 3.51
3795 4566 2.220313 GAGAAGCTGATTGGCAGGATC 58.780 52.381 0.00 0.00 45.03 3.36
3855 4626 0.036010 AATCCTGCTTCCACCAGTCG 60.036 55.000 0.00 0.00 0.00 4.18
3888 4659 0.953960 GGAAAGTGAACCCGACGCAT 60.954 55.000 0.00 0.00 0.00 4.73
3926 4697 4.699925 TTTACACCAAGGTTAGCACTCT 57.300 40.909 0.00 0.00 0.00 3.24
3927 4698 5.811796 TTTACACCAAGGTTAGCACTCTA 57.188 39.130 0.00 0.00 0.00 2.43
3928 4699 3.963428 ACACCAAGGTTAGCACTCTAG 57.037 47.619 0.00 0.00 0.00 2.43
3929 4700 3.240302 ACACCAAGGTTAGCACTCTAGT 58.760 45.455 0.00 0.00 0.00 2.57
3990 4765 7.177216 TCCATTTGCTACAATTTTCTGTCATCT 59.823 33.333 0.00 0.00 0.00 2.90
3991 4766 7.816031 CCATTTGCTACAATTTTCTGTCATCTT 59.184 33.333 0.00 0.00 0.00 2.40
3998 4773 7.288810 ACAATTTTCTGTCATCTTTTAGGCA 57.711 32.000 0.00 0.00 0.00 4.75
4081 4984 8.879227 AGGAAAAATCACCTTAATCATTTTGGA 58.121 29.630 0.00 0.00 31.95 3.53
4353 5257 6.860034 ACCAGGTACTTTCCTTTCCTTTTAT 58.140 36.000 0.00 0.00 34.60 1.40
4355 5259 6.719829 CCAGGTACTTTCCTTTCCTTTTATGT 59.280 38.462 0.00 0.00 34.60 2.29
4356 5260 7.886446 CCAGGTACTTTCCTTTCCTTTTATGTA 59.114 37.037 0.00 0.00 34.60 2.29
4420 5325 4.575885 ACTGATTTAACCTTGCGCTTCTA 58.424 39.130 9.73 0.00 0.00 2.10
4428 5333 3.134458 ACCTTGCGCTTCTAAGATATGC 58.866 45.455 9.73 0.00 0.00 3.14
4527 5432 1.933853 GGAATCTTGCGTTATGAGCGT 59.066 47.619 0.00 0.00 37.44 5.07
4539 5444 0.179004 ATGAGCGTGTGTTTGGGGAA 60.179 50.000 0.00 0.00 0.00 3.97
4591 5496 3.932545 TGCATAACTTCGTTGGCAAAT 57.067 38.095 0.00 0.00 35.45 2.32
4641 5546 7.488322 TGGAGAAAACACTAAAAATTCAGTGG 58.512 34.615 15.33 3.05 45.22 4.00
4662 5567 5.178809 GTGGTTTTCTACACCATACACTGTC 59.821 44.000 0.00 0.00 46.19 3.51
4919 5827 2.308570 TGACTGCACCACCAAGGAATAT 59.691 45.455 0.00 0.00 41.22 1.28
4970 5878 1.740380 CGTGACACCATCCTCCACATC 60.740 57.143 0.00 0.00 0.00 3.06
4999 5907 9.893305 AGTATGTTTTACTGCAAAGATTGTAAC 57.107 29.630 0.00 0.00 0.00 2.50
5002 5910 7.990917 TGTTTTACTGCAAAGATTGTAACTCA 58.009 30.769 0.00 0.00 0.00 3.41
5003 5911 8.629158 TGTTTTACTGCAAAGATTGTAACTCAT 58.371 29.630 0.00 0.00 0.00 2.90
5004 5912 9.463443 GTTTTACTGCAAAGATTGTAACTCATT 57.537 29.630 0.00 0.00 0.00 2.57
5006 5914 9.462174 TTTACTGCAAAGATTGTAACTCATTTG 57.538 29.630 0.00 0.00 0.00 2.32
5007 5915 7.042797 ACTGCAAAGATTGTAACTCATTTGT 57.957 32.000 0.00 0.00 31.84 2.83
5008 5916 8.165239 ACTGCAAAGATTGTAACTCATTTGTA 57.835 30.769 0.00 0.00 31.84 2.41
5032 5940 9.651718 GTAAACTCATTTTAGTGTATATGCTGC 57.348 33.333 0.00 0.00 29.89 5.25
5251 6172 3.392285 TCCATGATGTGAAGACCTATGGG 59.608 47.826 0.00 0.00 35.48 4.00
5337 6258 6.501781 CAGATTTGTTTCAGAGAAGCAAACT 58.498 36.000 19.15 15.64 32.85 2.66
5372 6293 4.734398 AACCTCTGTTTTGCACATGAAA 57.266 36.364 0.00 0.00 33.76 2.69
5407 6329 0.608035 ATGCCGGTTTCCACGATGTT 60.608 50.000 1.90 0.00 0.00 2.71
5457 6379 3.968265 TCATCTTCCCCTTTGAATCCAC 58.032 45.455 0.00 0.00 0.00 4.02
5461 6383 2.059756 TCCCCTTTGAATCCACTCCT 57.940 50.000 0.00 0.00 0.00 3.69
5492 6417 3.873952 GTCATGCACTTCCTGAATCCTAC 59.126 47.826 0.00 0.00 0.00 3.18
5500 6426 6.706295 CACTTCCTGAATCCTACTCTTTTCT 58.294 40.000 0.00 0.00 0.00 2.52
5502 6428 7.333174 CACTTCCTGAATCCTACTCTTTTCTTC 59.667 40.741 0.00 0.00 0.00 2.87
5503 6429 6.301169 TCCTGAATCCTACTCTTTTCTTCC 57.699 41.667 0.00 0.00 0.00 3.46
5506 6432 5.479306 TGAATCCTACTCTTTTCTTCCACG 58.521 41.667 0.00 0.00 0.00 4.94
5507 6433 5.011738 TGAATCCTACTCTTTTCTTCCACGT 59.988 40.000 0.00 0.00 0.00 4.49
5508 6434 4.950205 TCCTACTCTTTTCTTCCACGTT 57.050 40.909 0.00 0.00 0.00 3.99
5517 6448 6.857956 TCTTTTCTTCCACGTTGATTTGAAA 58.142 32.000 0.00 0.00 0.00 2.69
5518 6449 7.316640 TCTTTTCTTCCACGTTGATTTGAAAA 58.683 30.769 16.75 16.75 33.21 2.29
5521 6452 7.462109 TTCTTCCACGTTGATTTGAAAAATG 57.538 32.000 0.00 0.00 0.00 2.32
5522 6453 6.568869 TCTTCCACGTTGATTTGAAAAATGT 58.431 32.000 0.00 0.00 0.00 2.71
5529 6461 9.782028 CACGTTGATTTGAAAAATGTAAGAATG 57.218 29.630 0.00 0.00 0.00 2.67
5538 6470 7.939782 TGAAAAATGTAAGAATGTCTTCAGCA 58.060 30.769 0.00 0.00 37.89 4.41
5542 6474 8.621532 AAATGTAAGAATGTCTTCAGCAACTA 57.378 30.769 0.00 0.00 37.89 2.24
5549 6481 6.370994 AGAATGTCTTCAGCAACTAACATGAG 59.629 38.462 0.00 0.00 33.56 2.90
5564 6496 3.641031 TGAGCATCACGGTCGTATG 57.359 52.632 0.00 2.85 42.56 2.39
5565 6497 0.527600 TGAGCATCACGGTCGTATGC 60.528 55.000 19.77 19.77 42.56 3.14
5566 6498 4.420143 GCATCACGGTCGTATGCT 57.580 55.556 19.94 0.00 42.15 3.79
5567 6499 2.677971 GCATCACGGTCGTATGCTT 58.322 52.632 19.94 0.00 42.15 3.91
5568 6500 0.301687 GCATCACGGTCGTATGCTTG 59.698 55.000 19.94 7.69 42.15 4.01
5614 6546 4.704103 AGGGAGCTGGGCGAGACA 62.704 66.667 0.00 0.00 0.00 3.41
5787 6720 3.736483 GCCATGGACGCGATGATT 58.264 55.556 18.40 0.00 0.00 2.57
5848 6784 0.249699 TCGGTGCTCGACAATGTTGT 60.250 50.000 0.00 0.00 43.74 3.32
6018 6959 1.626654 CTGTTGCTACGTGGCCTTCG 61.627 60.000 21.89 16.71 0.00 3.79
6055 7000 3.214328 GTGACCTCACACCATCTTTTGT 58.786 45.455 0.31 0.00 45.75 2.83
6082 7027 7.944554 CCTTCCTTCATAATGCTTTAATCCCTA 59.055 37.037 0.00 0.00 0.00 3.53
6121 7066 2.092375 GGAATTAACACCTGCCTAGCCT 60.092 50.000 0.00 0.00 0.00 4.58
6123 7068 2.781681 TTAACACCTGCCTAGCCTTC 57.218 50.000 0.00 0.00 0.00 3.46
6125 7070 0.842467 AACACCTGCCTAGCCTTCCT 60.842 55.000 0.00 0.00 0.00 3.36
6127 7072 0.107459 CACCTGCCTAGCCTTCCTTC 60.107 60.000 0.00 0.00 0.00 3.46
6132 7077 1.271926 TGCCTAGCCTTCCTTCCAAAC 60.272 52.381 0.00 0.00 0.00 2.93
6137 7082 3.895704 AGCCTTCCTTCCAAACCTTTA 57.104 42.857 0.00 0.00 0.00 1.85
6145 7095 3.243737 CCTTCCAAACCTTTAGTGCCAAC 60.244 47.826 0.00 0.00 0.00 3.77
6237 8720 9.937175 GCTAGGATTTGTTAAGATTGAATGTAC 57.063 33.333 0.00 0.00 0.00 2.90
6279 8763 4.647611 TCTTATCTCTAGGAGAGGCTTCG 58.352 47.826 3.73 0.00 42.26 3.79
6293 8777 0.321653 GCTTCGTGTCCTCCAACCAT 60.322 55.000 0.00 0.00 0.00 3.55
6294 8778 1.066430 GCTTCGTGTCCTCCAACCATA 60.066 52.381 0.00 0.00 0.00 2.74
6295 8779 2.420129 GCTTCGTGTCCTCCAACCATAT 60.420 50.000 0.00 0.00 0.00 1.78
6296 8780 3.181469 GCTTCGTGTCCTCCAACCATATA 60.181 47.826 0.00 0.00 0.00 0.86
6297 8781 4.503296 GCTTCGTGTCCTCCAACCATATAT 60.503 45.833 0.00 0.00 0.00 0.86
6298 8782 5.279306 GCTTCGTGTCCTCCAACCATATATA 60.279 44.000 0.00 0.00 0.00 0.86
6299 8783 5.717078 TCGTGTCCTCCAACCATATATAC 57.283 43.478 0.00 0.00 0.00 1.47
6300 8784 5.391256 TCGTGTCCTCCAACCATATATACT 58.609 41.667 0.00 0.00 0.00 2.12
6338 8822 2.091720 AGGCTCAATAATGCATCCACCA 60.092 45.455 0.00 0.00 0.00 4.17
6355 8858 3.600388 CACCACATTCCCTTCTCAGTAC 58.400 50.000 0.00 0.00 0.00 2.73
6361 8864 5.939883 CACATTCCCTTCTCAGTACAAATGA 59.060 40.000 0.00 0.00 0.00 2.57
6364 8867 3.519510 TCCCTTCTCAGTACAAATGAGGG 59.480 47.826 14.23 14.23 43.60 4.30
6392 8895 2.484062 CCTCCCACATTCATGGCGC 61.484 63.158 0.00 0.00 38.55 6.53
6396 8899 4.892379 CACATTCATGGCGCGGCG 62.892 66.667 28.22 19.62 0.00 6.46
6468 8972 1.763545 CCTCAAACCCTAGCCTACCTC 59.236 57.143 0.00 0.00 0.00 3.85
6520 9051 3.415087 GAGGAGCTGCCCCACCAT 61.415 66.667 2.14 0.00 37.37 3.55
6529 9060 3.009115 CCCCACCATCCCACGACT 61.009 66.667 0.00 0.00 0.00 4.18
6530 9061 1.687840 CCCCACCATCCCACGACTA 60.688 63.158 0.00 0.00 0.00 2.59
6576 9107 2.438434 CCGGATCAAGCACCACCC 60.438 66.667 0.00 0.00 0.00 4.61
6578 9109 2.763215 GGATCAAGCACCACCCCA 59.237 61.111 0.00 0.00 0.00 4.96
6607 9138 1.407437 CCACCTTCCTCGATGAAAGGG 60.407 57.143 19.11 13.50 34.46 3.95
6608 9139 0.253327 ACCTTCCTCGATGAAAGGGC 59.747 55.000 19.11 0.00 34.46 5.19
6609 9140 0.253044 CCTTCCTCGATGAAAGGGCA 59.747 55.000 4.66 0.00 34.46 5.36
6661 9192 3.911868 ACAACACAATTTGCATATGCGT 58.088 36.364 22.21 10.94 45.83 5.24
6715 9246 2.391469 CATTTCTGCAGAGGAGCGG 58.609 57.895 17.43 1.26 42.28 5.52
6719 9250 1.304464 TCTGCAGAGGAGCGGAAGA 60.304 57.895 13.74 0.00 46.29 2.87
6721 9252 0.177604 CTGCAGAGGAGCGGAAGAAT 59.822 55.000 8.42 0.00 43.63 2.40
6724 9255 1.933247 CAGAGGAGCGGAAGAATGTC 58.067 55.000 0.00 0.00 0.00 3.06
6743 9274 1.165270 CGTCCGCAAAAATCCTTCCT 58.835 50.000 0.00 0.00 0.00 3.36
6744 9275 1.130561 CGTCCGCAAAAATCCTTCCTC 59.869 52.381 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.372334 GTGTGTCACGTTGCTTCGTT 59.628 50.000 0.00 0.00 42.27 3.85
23 24 4.081031 GGAAGTTTTACCTAGCCTAGCAGT 60.081 45.833 0.00 0.00 0.00 4.40
63 69 1.208358 CATGCATTGCTATCGCCCG 59.792 57.895 10.49 0.00 34.43 6.13
70 76 1.175654 CCACACCACATGCATTGCTA 58.824 50.000 10.49 0.00 0.00 3.49
157 167 2.281761 GAGCAGTGTGGTGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
192 205 3.142838 CTTGGGCTCGCCAATGGG 61.143 66.667 10.51 0.00 37.98 4.00
249 267 3.791076 GGGGAGGGGAGGGGATGA 61.791 72.222 0.00 0.00 0.00 2.92
250 268 3.795924 AGGGGAGGGGAGGGGATG 61.796 72.222 0.00 0.00 0.00 3.51
251 269 3.795924 CAGGGGAGGGGAGGGGAT 61.796 72.222 0.00 0.00 0.00 3.85
318 336 5.711976 CCTTTGTTTCTCTCTCTCTCTCTCT 59.288 44.000 0.00 0.00 0.00 3.10
325 343 2.028930 TCCGCCTTTGTTTCTCTCTCTC 60.029 50.000 0.00 0.00 0.00 3.20
326 344 1.971357 TCCGCCTTTGTTTCTCTCTCT 59.029 47.619 0.00 0.00 0.00 3.10
327 345 2.342179 CTCCGCCTTTGTTTCTCTCTC 58.658 52.381 0.00 0.00 0.00 3.20
328 346 1.609320 GCTCCGCCTTTGTTTCTCTCT 60.609 52.381 0.00 0.00 0.00 3.10
329 347 0.799393 GCTCCGCCTTTGTTTCTCTC 59.201 55.000 0.00 0.00 0.00 3.20
330 348 0.951040 CGCTCCGCCTTTGTTTCTCT 60.951 55.000 0.00 0.00 0.00 3.10
331 349 0.949105 TCGCTCCGCCTTTGTTTCTC 60.949 55.000 0.00 0.00 0.00 2.87
332 350 1.070786 TCGCTCCGCCTTTGTTTCT 59.929 52.632 0.00 0.00 0.00 2.52
333 351 1.206831 GTCGCTCCGCCTTTGTTTC 59.793 57.895 0.00 0.00 0.00 2.78
334 352 1.098712 TTGTCGCTCCGCCTTTGTTT 61.099 50.000 0.00 0.00 0.00 2.83
446 558 3.415087 GCTGGATCTGGGTGGGCT 61.415 66.667 0.00 0.00 0.00 5.19
600 725 3.504273 TGTGTGTGTGTGTGCGCC 61.504 61.111 4.18 0.00 0.00 6.53
601 726 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
603 728 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
604 729 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
605 730 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
606 731 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
607 732 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
608 733 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
609 734 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
610 735 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
611 736 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
612 737 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
613 738 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
614 739 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
615 740 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
616 741 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
617 742 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
618 743 1.128507 GAGTGTGTGTGTGTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
619 744 1.001974 AGAGTGTGTGTGTGTGTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
620 745 1.660607 GAGAGTGTGTGTGTGTGTGTG 59.339 52.381 0.00 0.00 0.00 3.82
621 746 1.550524 AGAGAGTGTGTGTGTGTGTGT 59.449 47.619 0.00 0.00 0.00 3.72
622 747 2.159184 AGAGAGAGTGTGTGTGTGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
623 748 2.103373 AGAGAGAGTGTGTGTGTGTGT 58.897 47.619 0.00 0.00 0.00 3.72
624 749 2.862536 CAAGAGAGAGTGTGTGTGTGTG 59.137 50.000 0.00 0.00 0.00 3.82
625 750 2.497675 ACAAGAGAGAGTGTGTGTGTGT 59.502 45.455 0.00 0.00 0.00 3.72
626 751 3.119291 GACAAGAGAGAGTGTGTGTGTG 58.881 50.000 0.00 0.00 0.00 3.82
627 752 2.223595 CGACAAGAGAGAGTGTGTGTGT 60.224 50.000 0.00 0.00 0.00 3.72
628 753 2.389059 CGACAAGAGAGAGTGTGTGTG 58.611 52.381 0.00 0.00 0.00 3.82
629 754 1.269309 GCGACAAGAGAGAGTGTGTGT 60.269 52.381 0.00 0.00 0.00 3.72
630 755 1.413382 GCGACAAGAGAGAGTGTGTG 58.587 55.000 0.00 0.00 0.00 3.82
631 756 0.315568 GGCGACAAGAGAGAGTGTGT 59.684 55.000 0.00 0.00 0.00 3.72
632 757 0.389166 GGGCGACAAGAGAGAGTGTG 60.389 60.000 0.00 0.00 0.00 3.82
633 758 1.536943 GGGGCGACAAGAGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
634 759 1.216710 GGGGCGACAAGAGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
635 760 1.228894 TGGGGCGACAAGAGAGAGT 60.229 57.895 0.00 0.00 0.00 3.24
636 761 1.216710 GTGGGGCGACAAGAGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
637 762 1.228894 AGTGGGGCGACAAGAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
638 763 1.216710 GAGTGGGGCGACAAGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
639 764 2.283529 GGAGTGGGGCGACAAGAGA 61.284 63.158 0.00 0.00 0.00 3.10
672 799 2.156343 ACTTCCAACTCTGAACGAGC 57.844 50.000 0.00 0.00 43.85 5.03
673 800 2.802816 CCAACTTCCAACTCTGAACGAG 59.197 50.000 0.00 0.00 45.56 4.18
674 801 2.432874 TCCAACTTCCAACTCTGAACGA 59.567 45.455 0.00 0.00 0.00 3.85
675 802 2.833794 TCCAACTTCCAACTCTGAACG 58.166 47.619 0.00 0.00 0.00 3.95
676 803 3.315470 GGTTCCAACTTCCAACTCTGAAC 59.685 47.826 0.00 0.00 0.00 3.18
677 804 3.202151 AGGTTCCAACTTCCAACTCTGAA 59.798 43.478 0.00 0.00 0.00 3.02
678 805 2.777692 AGGTTCCAACTTCCAACTCTGA 59.222 45.455 0.00 0.00 0.00 3.27
679 806 3.142174 GAGGTTCCAACTTCCAACTCTG 58.858 50.000 0.00 0.00 0.00 3.35
680 807 3.493767 GAGGTTCCAACTTCCAACTCT 57.506 47.619 0.00 0.00 0.00 3.24
732 870 1.219393 GAGAGCCGGAAACCTCCTG 59.781 63.158 5.05 0.00 39.93 3.86
733 871 2.352032 CGAGAGCCGGAAACCTCCT 61.352 63.158 5.05 0.00 39.93 3.69
735 873 1.139947 CTCGAGAGCCGGAAACCTC 59.860 63.158 6.58 1.22 39.14 3.85
736 874 2.352032 CCTCGAGAGCCGGAAACCT 61.352 63.158 15.71 0.00 39.14 3.50
737 875 2.184579 CCTCGAGAGCCGGAAACC 59.815 66.667 15.71 0.00 39.14 3.27
738 876 2.184579 CCCTCGAGAGCCGGAAAC 59.815 66.667 15.71 0.00 39.14 2.78
739 877 3.771160 GCCCTCGAGAGCCGGAAA 61.771 66.667 15.71 0.00 39.14 3.13
740 878 4.761058 AGCCCTCGAGAGCCGGAA 62.761 66.667 16.04 0.00 39.14 4.30
912 1066 1.332904 CGTCGTTTCAAAGGTGTGAGC 60.333 52.381 0.00 0.00 0.00 4.26
944 1098 4.811364 GAAGGGAGCAGGGCAGGC 62.811 72.222 0.00 0.00 0.00 4.85
948 1102 2.273776 GAAGGAAGGGAGCAGGGC 59.726 66.667 0.00 0.00 0.00 5.19
983 1143 3.854809 GTCCATCTTCTTCTCTCGTTTCG 59.145 47.826 0.00 0.00 0.00 3.46
1046 1208 1.847999 GACGACGAACAACAAAGACGA 59.152 47.619 0.00 0.00 0.00 4.20
1051 1213 0.922717 GTCCGACGACGAACAACAAA 59.077 50.000 9.28 0.00 42.66 2.83
1071 1253 3.799755 GTCAACGCCGGCATCACC 61.800 66.667 28.98 6.97 0.00 4.02
1099 1281 3.061848 CAACCCATCGGCCACACC 61.062 66.667 2.24 0.00 0.00 4.16
1118 1300 0.587242 GCACGCACGCACATAATCAG 60.587 55.000 0.00 0.00 0.00 2.90
1261 1451 6.208007 TGATTGGTGGTATATACAGTACCTCG 59.792 42.308 22.83 0.00 41.73 4.63
1269 1459 7.872061 AGAAGGATGATTGGTGGTATATACA 57.128 36.000 14.70 0.00 0.00 2.29
1278 1468 4.093998 CGACAAGAAGAAGGATGATTGGTG 59.906 45.833 0.00 0.00 0.00 4.17
1298 1488 1.571460 GGAATGGATGCGATGCGAC 59.429 57.895 0.00 0.00 0.00 5.19
1377 1567 4.374013 CGCGTACGTATCATCACAAGAATG 60.374 45.833 17.90 0.00 33.53 2.67
1378 1568 3.729217 CGCGTACGTATCATCACAAGAAT 59.271 43.478 17.90 0.00 33.53 2.40
1500 1719 2.639065 CCACAACACAACAGTACTGGT 58.361 47.619 26.12 18.46 34.19 4.00
1501 1720 1.333619 GCCACAACACAACAGTACTGG 59.666 52.381 26.12 12.24 34.19 4.00
1502 1721 1.003972 CGCCACAACACAACAGTACTG 60.004 52.381 21.44 21.44 0.00 2.74
1503 1722 1.295792 CGCCACAACACAACAGTACT 58.704 50.000 0.00 0.00 0.00 2.73
1504 1723 1.011333 ACGCCACAACACAACAGTAC 58.989 50.000 0.00 0.00 0.00 2.73
1689 1913 1.202758 AGAAATCCAACTGACACGCCA 60.203 47.619 0.00 0.00 0.00 5.69
1777 2001 8.306761 CAAATCAAACTACCTATCAGCCTTTTT 58.693 33.333 0.00 0.00 0.00 1.94
1842 2075 0.251354 TAGCCCTGCTGCTTTCAGAG 59.749 55.000 0.00 0.00 42.95 3.35
1946 2183 5.674052 TTTGTAATCATGGTGGAAATGGG 57.326 39.130 0.00 0.00 0.00 4.00
2023 2520 9.109393 GACTTGACTAGCCATGTTTATTTATGA 57.891 33.333 0.00 0.00 0.00 2.15
2058 2555 2.346803 ACAAAATCAGATCACCGTCCG 58.653 47.619 0.00 0.00 0.00 4.79
2111 2609 7.125204 AGTGTCATTTTATAGTAGTAGCACCCA 59.875 37.037 0.00 0.00 0.00 4.51
2178 2710 1.448540 GTGGATGGTGCTGAGGTCG 60.449 63.158 0.00 0.00 0.00 4.79
2180 2712 0.037303 CAAGTGGATGGTGCTGAGGT 59.963 55.000 0.00 0.00 0.00 3.85
2249 2838 6.571150 GCAAATAAGTGAGAGTGGCAAGATTT 60.571 38.462 0.00 0.00 0.00 2.17
2250 2839 5.105997 GCAAATAAGTGAGAGTGGCAAGATT 60.106 40.000 0.00 0.00 0.00 2.40
2292 2884 5.411669 CACTTTCACTTAGTTCCCCACATAC 59.588 44.000 0.00 0.00 0.00 2.39
2304 2896 6.677781 TTTTCACCACTCACTTTCACTTAG 57.322 37.500 0.00 0.00 0.00 2.18
2335 2929 3.009363 TGGCCATGAATCTCTTCTGTTGA 59.991 43.478 0.00 0.00 32.29 3.18
2344 2938 2.146342 CCGTATGTGGCCATGAATCTC 58.854 52.381 9.72 0.00 32.29 2.75
2346 2940 2.254546 TCCGTATGTGGCCATGAATC 57.745 50.000 9.72 0.00 32.29 2.52
2358 2952 2.616842 GGTAAGGTGCCAATTCCGTATG 59.383 50.000 0.00 0.00 0.00 2.39
2360 2954 1.629353 TGGTAAGGTGCCAATTCCGTA 59.371 47.619 0.00 0.00 32.29 4.02
2387 2981 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
2388 2982 8.443953 TTTGGAAGAAGAAGAAGAAGAAGAAG 57.556 34.615 0.00 0.00 0.00 2.85
2389 2983 8.807948 TTTTGGAAGAAGAAGAAGAAGAAGAA 57.192 30.769 0.00 0.00 0.00 2.52
2390 2984 8.844244 CATTTTGGAAGAAGAAGAAGAAGAAGA 58.156 33.333 0.00 0.00 0.00 2.87
2391 2985 8.081025 CCATTTTGGAAGAAGAAGAAGAAGAAG 58.919 37.037 0.00 0.00 40.96 2.85
2392 2986 7.470563 GCCATTTTGGAAGAAGAAGAAGAAGAA 60.471 37.037 0.00 0.00 40.96 2.52
2424 3021 4.586841 TGTTCTTGTTAATGGAAAGTGGGG 59.413 41.667 0.00 0.00 0.00 4.96
2433 3030 3.745975 TCGTGCTCTGTTCTTGTTAATGG 59.254 43.478 0.00 0.00 0.00 3.16
2437 3034 4.049186 GTTCTCGTGCTCTGTTCTTGTTA 58.951 43.478 0.00 0.00 0.00 2.41
2453 3050 7.538678 TGATGATCATTGTATATGACGTTCTCG 59.461 37.037 10.14 0.00 43.34 4.04
2470 3070 6.540083 TGCATATTTCTGGAGTGATGATCAT 58.460 36.000 8.25 8.25 0.00 2.45
2482 3082 8.525316 TGATAATTATTGGCTGCATATTTCTGG 58.475 33.333 0.50 0.00 0.00 3.86
2489 3089 7.147312 GCTTTGTGATAATTATTGGCTGCATA 58.853 34.615 0.50 0.00 0.00 3.14
2501 3101 5.812642 CCTCTACGACTGCTTTGTGATAATT 59.187 40.000 0.00 0.00 0.00 1.40
2503 3103 4.381612 CCCTCTACGACTGCTTTGTGATAA 60.382 45.833 0.00 0.00 0.00 1.75
2519 3119 1.271840 TGACCATGGTGCCCCTCTAC 61.272 60.000 25.52 4.63 0.00 2.59
2531 3131 1.619654 TTGGCCTTGAACTGACCATG 58.380 50.000 3.32 0.00 0.00 3.66
2533 3133 2.031120 CTTTTGGCCTTGAACTGACCA 58.969 47.619 3.32 0.00 0.00 4.02
2609 3220 8.851145 GCAGCTACTATGAGCCACTTATATATA 58.149 37.037 0.00 0.00 43.97 0.86
2610 3221 7.343057 TGCAGCTACTATGAGCCACTTATATAT 59.657 37.037 0.00 0.00 43.97 0.86
2611 3222 6.663523 TGCAGCTACTATGAGCCACTTATATA 59.336 38.462 0.00 0.00 43.97 0.86
2612 3223 5.481824 TGCAGCTACTATGAGCCACTTATAT 59.518 40.000 0.00 0.00 43.97 0.86
2613 3224 4.832823 TGCAGCTACTATGAGCCACTTATA 59.167 41.667 0.00 0.00 43.97 0.98
2614 3225 3.643320 TGCAGCTACTATGAGCCACTTAT 59.357 43.478 0.00 0.00 43.97 1.73
2615 3226 3.031013 TGCAGCTACTATGAGCCACTTA 58.969 45.455 0.00 0.00 43.97 2.24
2616 3227 1.833630 TGCAGCTACTATGAGCCACTT 59.166 47.619 0.00 0.00 43.97 3.16
2617 3228 1.489481 TGCAGCTACTATGAGCCACT 58.511 50.000 0.00 0.00 43.97 4.00
2618 3229 2.540265 ATGCAGCTACTATGAGCCAC 57.460 50.000 0.00 0.00 43.97 5.01
2619 3230 2.300152 GGTATGCAGCTACTATGAGCCA 59.700 50.000 0.00 0.00 43.97 4.75
2620 3231 2.354203 GGGTATGCAGCTACTATGAGCC 60.354 54.545 0.00 0.00 43.97 4.70
2621 3232 2.300152 TGGGTATGCAGCTACTATGAGC 59.700 50.000 0.00 0.00 43.19 4.26
2622 3233 4.815533 ATGGGTATGCAGCTACTATGAG 57.184 45.455 0.00 0.00 0.00 2.90
2623 3234 4.160439 GCTATGGGTATGCAGCTACTATGA 59.840 45.833 0.00 0.00 0.00 2.15
2624 3235 4.437239 GCTATGGGTATGCAGCTACTATG 58.563 47.826 0.00 0.00 0.00 2.23
2625 3236 3.131223 CGCTATGGGTATGCAGCTACTAT 59.869 47.826 0.00 0.00 31.74 2.12
2626 3237 2.492088 CGCTATGGGTATGCAGCTACTA 59.508 50.000 0.00 0.00 31.74 1.82
2627 3238 1.273606 CGCTATGGGTATGCAGCTACT 59.726 52.381 0.00 0.00 31.74 2.57
2628 3239 1.000955 ACGCTATGGGTATGCAGCTAC 59.999 52.381 0.00 0.00 31.74 3.58
2629 3240 1.000843 CACGCTATGGGTATGCAGCTA 59.999 52.381 0.00 0.00 31.74 3.32
2630 3241 0.250038 CACGCTATGGGTATGCAGCT 60.250 55.000 0.00 0.00 31.74 4.24
2640 3251 2.896854 ATGCCACGCACGCTATGG 60.897 61.111 5.13 5.13 43.04 2.74
2741 3355 4.619227 ACACGCCGGAGTTGGTGG 62.619 66.667 8.62 0.00 43.96 4.61
2823 3437 2.363975 TACCACCATGCGGTCCTCC 61.364 63.158 8.22 0.00 44.71 4.30
2954 3598 1.965754 GCTCGCTCATGGTTCCCTCT 61.966 60.000 0.00 0.00 0.00 3.69
2955 3599 1.522580 GCTCGCTCATGGTTCCCTC 60.523 63.158 0.00 0.00 0.00 4.30
2956 3600 2.249413 CTGCTCGCTCATGGTTCCCT 62.249 60.000 0.00 0.00 0.00 4.20
2957 3601 1.817099 CTGCTCGCTCATGGTTCCC 60.817 63.158 0.00 0.00 0.00 3.97
2958 3602 1.817099 CCTGCTCGCTCATGGTTCC 60.817 63.158 0.00 0.00 0.00 3.62
2959 3603 1.817099 CCCTGCTCGCTCATGGTTC 60.817 63.158 0.00 0.00 0.00 3.62
2960 3604 2.270205 CCCTGCTCGCTCATGGTT 59.730 61.111 0.00 0.00 0.00 3.67
2961 3605 3.790437 CCCCTGCTCGCTCATGGT 61.790 66.667 0.00 0.00 0.00 3.55
2962 3606 4.559063 CCCCCTGCTCGCTCATGG 62.559 72.222 0.00 0.00 0.00 3.66
2981 3625 1.923395 CTCCTTGGTACCCTGCCCA 60.923 63.158 10.07 0.00 0.00 5.36
3015 3659 0.535553 ATCTCTCTCGACCCTACGGC 60.536 60.000 0.00 0.00 0.00 5.68
3140 3784 1.078143 GGTGGATGGAGCTGTGTCC 60.078 63.158 0.00 0.00 37.10 4.02
3141 3785 0.254178 ATGGTGGATGGAGCTGTGTC 59.746 55.000 0.00 0.00 0.00 3.67
3142 3786 0.034767 CATGGTGGATGGAGCTGTGT 60.035 55.000 0.00 0.00 0.00 3.72
3148 3792 3.894759 AGACAAATCATGGTGGATGGAG 58.105 45.455 0.00 0.00 32.26 3.86
3173 3817 1.299316 CCAGTGTGCGTGCCAAAAG 60.299 57.895 0.00 0.00 0.00 2.27
3183 3827 1.748493 TGGAAACAAGAACCAGTGTGC 59.252 47.619 0.00 0.00 37.44 4.57
3404 4064 3.181493 GGCAAGCATATGGACTCTGTTTG 60.181 47.826 4.56 0.00 35.15 2.93
3425 4091 1.277580 ATCAGAGGGGAGTGCCAAGG 61.278 60.000 1.97 0.00 35.15 3.61
3470 4137 0.307760 CCTCGTTCTGCAACAACACC 59.692 55.000 8.51 0.00 32.14 4.16
3521 4188 2.663520 ACGTCGGCGCACATGAAA 60.664 55.556 10.50 0.00 42.83 2.69
3599 4266 1.471287 TCGTCGTTGAGGTACATGAGG 59.529 52.381 0.00 0.00 0.00 3.86
3677 4375 2.287915 CACTGTCACAGAAAAGGTTCCG 59.712 50.000 13.14 0.00 35.18 4.30
3724 4422 3.802948 ATTTGCAACCGTTGTACCAAA 57.197 38.095 12.77 13.58 32.59 3.28
3727 4425 4.854839 GTCATAATTTGCAACCGTTGTACC 59.145 41.667 12.77 0.00 0.00 3.34
3949 4724 3.303351 AATGGAAGCAGATTACAGGGG 57.697 47.619 0.00 0.00 34.35 4.79
4025 4928 2.041301 ATGCAATGCCCCAGCCAT 60.041 55.556 1.53 0.00 38.69 4.40
4108 5011 2.381911 CTGCCTGCCATAAGGAACAAT 58.618 47.619 0.00 0.00 40.02 2.71
4168 5071 7.015226 TGTCCATAACGAAAGAGCATTATTG 57.985 36.000 0.00 0.00 0.00 1.90
4353 5257 8.187480 CCGATATGAACAAATGATTTTGGTACA 58.813 33.333 0.00 1.71 42.80 2.90
4355 5259 8.187480 CACCGATATGAACAAATGATTTTGGTA 58.813 33.333 3.76 0.00 42.80 3.25
4356 5260 7.035004 CACCGATATGAACAAATGATTTTGGT 58.965 34.615 3.76 0.00 45.40 3.67
4420 5325 3.524826 TCTCCCATAGCCAGCATATCTT 58.475 45.455 0.00 0.00 0.00 2.40
4428 5333 1.500474 TGACCTTCTCCCATAGCCAG 58.500 55.000 0.00 0.00 0.00 4.85
4527 5432 3.603965 ACATAACCTTCCCCAAACACA 57.396 42.857 0.00 0.00 0.00 3.72
4539 5444 1.065709 CCACCGGTGCTAACATAACCT 60.066 52.381 29.75 0.00 0.00 3.50
4641 5546 6.854496 TTGACAGTGTATGGTGTAGAAAAC 57.146 37.500 0.00 0.00 0.00 2.43
4645 5550 8.073467 TGATTATTGACAGTGTATGGTGTAGA 57.927 34.615 0.00 0.00 0.00 2.59
4919 5827 2.543848 GACATCAAACGTGTTCTCTGCA 59.456 45.455 0.00 0.00 0.00 4.41
4970 5878 7.867403 ACAATCTTTGCAGTAAAACATACTTGG 59.133 33.333 0.00 0.00 0.00 3.61
5006 5914 9.651718 GCAGCATATACACTAAAATGAGTTTAC 57.348 33.333 0.00 0.00 0.00 2.01
5007 5915 9.389755 TGCAGCATATACACTAAAATGAGTTTA 57.610 29.630 0.00 0.00 0.00 2.01
5008 5916 8.279970 TGCAGCATATACACTAAAATGAGTTT 57.720 30.769 0.00 0.00 0.00 2.66
5019 5927 5.001874 CCAATCATCTGCAGCATATACACT 58.998 41.667 9.47 0.00 0.00 3.55
5028 5936 4.585955 ATGATTTCCAATCATCTGCAGC 57.414 40.909 9.47 0.00 33.86 5.25
5029 5937 4.745125 GCAATGATTTCCAATCATCTGCAG 59.255 41.667 23.78 7.63 39.47 4.41
5030 5938 4.160626 TGCAATGATTTCCAATCATCTGCA 59.839 37.500 25.48 25.48 42.65 4.41
5031 5939 4.689071 TGCAATGATTTCCAATCATCTGC 58.311 39.130 22.95 22.95 39.74 4.26
5179 6100 1.667724 GCGAATTCCTCTGATGGTGTG 59.332 52.381 0.00 0.00 0.00 3.82
5337 6258 5.405063 ACAGAGGTTAGGAGCTTAGGATA 57.595 43.478 0.00 0.00 32.79 2.59
5372 6293 0.106819 GCATCCTCAAGCATCTGGGT 60.107 55.000 0.00 0.00 0.00 4.51
5434 6356 5.433051 AGTGGATTCAAAGGGGAAGATGATA 59.567 40.000 0.00 0.00 0.00 2.15
5442 6364 1.916181 GAGGAGTGGATTCAAAGGGGA 59.084 52.381 0.00 0.00 0.00 4.81
5457 6379 1.022735 GCATGACAATGGCAGAGGAG 58.977 55.000 0.00 0.00 34.09 3.69
5461 6383 1.814394 GAAGTGCATGACAATGGCAGA 59.186 47.619 0.00 0.00 34.09 4.26
5492 6417 6.060028 TCAAATCAACGTGGAAGAAAAGAG 57.940 37.500 0.00 0.00 0.00 2.85
5500 6426 8.191446 TCTTACATTTTTCAAATCAACGTGGAA 58.809 29.630 0.00 0.00 0.00 3.53
5502 6428 7.922505 TCTTACATTTTTCAAATCAACGTGG 57.077 32.000 0.00 0.00 0.00 4.94
5503 6429 9.782028 CATTCTTACATTTTTCAAATCAACGTG 57.218 29.630 0.00 0.00 0.00 4.49
5517 6448 7.516198 AGTTGCTGAAGACATTCTTACATTT 57.484 32.000 0.00 0.00 36.73 2.32
5518 6449 8.507249 GTTAGTTGCTGAAGACATTCTTACATT 58.493 33.333 0.00 0.00 36.73 2.71
5521 6452 7.421530 TGTTAGTTGCTGAAGACATTCTTAC 57.578 36.000 0.00 0.00 36.73 2.34
5522 6453 7.877612 TCATGTTAGTTGCTGAAGACATTCTTA 59.122 33.333 0.00 0.00 36.73 2.10
5529 6461 3.748048 TGCTCATGTTAGTTGCTGAAGAC 59.252 43.478 0.00 0.00 0.00 3.01
5538 6470 3.262420 GACCGTGATGCTCATGTTAGTT 58.738 45.455 0.00 0.00 31.62 2.24
5542 6474 0.037326 ACGACCGTGATGCTCATGTT 60.037 50.000 0.00 0.00 31.62 2.71
5549 6481 0.301687 CAAGCATACGACCGTGATGC 59.698 55.000 19.36 19.36 45.12 3.91
5556 6488 3.006940 TGAAATGACCAAGCATACGACC 58.993 45.455 0.00 0.00 0.00 4.79
5559 6491 4.437390 GGAACTGAAATGACCAAGCATACG 60.437 45.833 0.00 0.00 0.00 3.06
5562 6494 3.771216 AGGAACTGAAATGACCAAGCAT 58.229 40.909 0.00 0.00 37.18 3.79
5563 6495 3.228188 AGGAACTGAAATGACCAAGCA 57.772 42.857 0.00 0.00 37.18 3.91
5614 6546 2.037385 AGGCCTCCTTGTTCTTCTCT 57.963 50.000 0.00 0.00 0.00 3.10
5787 6720 2.999648 AAGCTGCTCTGCTCCCGA 61.000 61.111 1.00 0.00 43.24 5.14
5841 6777 0.102120 CAACACACGGCCACAACATT 59.898 50.000 2.24 0.00 0.00 2.71
5848 6784 4.116585 ACACCCAACACACGGCCA 62.117 61.111 2.24 0.00 0.00 5.36
6018 6959 2.309528 TCACACAACTCCACAGTGAC 57.690 50.000 0.62 0.00 34.59 3.67
6045 6990 7.486647 CATTATGAAGGAAGGACAAAAGATGG 58.513 38.462 0.00 0.00 0.00 3.51
6055 7000 6.777580 GGGATTAAAGCATTATGAAGGAAGGA 59.222 38.462 0.00 0.00 0.00 3.36
6093 7038 4.079253 GGCAGGTGTTAATTCCTCAAAGA 58.921 43.478 0.00 0.00 30.91 2.52
6112 7057 1.072266 TTTGGAAGGAAGGCTAGGCA 58.928 50.000 19.70 0.00 0.00 4.75
6121 7066 3.227614 GGCACTAAAGGTTTGGAAGGAA 58.772 45.455 0.00 0.00 0.00 3.36
6123 7068 2.593026 TGGCACTAAAGGTTTGGAAGG 58.407 47.619 0.00 0.00 0.00 3.46
6125 7070 3.366396 TGTTGGCACTAAAGGTTTGGAA 58.634 40.909 0.00 0.00 0.00 3.53
6127 7072 3.810310 TTGTTGGCACTAAAGGTTTGG 57.190 42.857 0.00 0.00 0.00 3.28
6132 7077 6.325919 TGTTCTATTTGTTGGCACTAAAGG 57.674 37.500 0.00 0.00 0.00 3.11
6137 7082 4.394920 CGGTATGTTCTATTTGTTGGCACT 59.605 41.667 0.00 0.00 0.00 4.40
6145 7095 4.266976 GGTCGTGTCGGTATGTTCTATTTG 59.733 45.833 0.00 0.00 0.00 2.32
6293 8777 9.570468 CCTCGAGGGCAAGTATATAAGTATATA 57.430 37.037 24.62 0.00 31.69 0.86
6294 8778 8.466617 CCTCGAGGGCAAGTATATAAGTATAT 57.533 38.462 24.62 0.00 33.68 0.86
6295 8779 7.876936 CCTCGAGGGCAAGTATATAAGTATA 57.123 40.000 24.62 0.00 0.00 1.47
6296 8780 6.777213 CCTCGAGGGCAAGTATATAAGTAT 57.223 41.667 24.62 0.00 0.00 2.12
6338 8822 6.126863 TCATTTGTACTGAGAAGGGAATGT 57.873 37.500 0.00 0.00 0.00 2.71
6364 8867 0.985490 ATGTGGGAGGAGAGGCTTCC 60.985 60.000 7.41 7.41 41.86 3.46
6440 8943 4.735358 GGGTTTGAGGGCGGGGTC 62.735 72.222 0.00 0.00 0.00 4.46
6442 8945 3.012722 TAGGGTTTGAGGGCGGGG 61.013 66.667 0.00 0.00 0.00 5.73
6450 8954 1.481871 CGAGGTAGGCTAGGGTTTGA 58.518 55.000 0.00 0.00 0.00 2.69
6513 9044 1.520666 GTAGTCGTGGGATGGTGGG 59.479 63.158 0.00 0.00 0.00 4.61
6515 9046 1.518572 GCGTAGTCGTGGGATGGTG 60.519 63.158 0.00 0.00 39.49 4.17
6516 9047 2.718073 GGCGTAGTCGTGGGATGGT 61.718 63.158 0.00 0.00 39.49 3.55
6520 9051 2.034532 TCAGGCGTAGTCGTGGGA 59.965 61.111 0.00 0.00 36.95 4.37
6525 9056 2.403987 CGAGGTCAGGCGTAGTCG 59.596 66.667 0.00 0.00 36.95 4.18
6547 9078 1.775385 TGATCCGGCAGTAGATGTCA 58.225 50.000 0.00 0.00 30.75 3.58
6551 9082 1.123077 TGCTTGATCCGGCAGTAGAT 58.877 50.000 0.00 0.00 34.22 1.98
6576 9107 1.425448 AGGAAGGTGGAGGAAGTTTGG 59.575 52.381 0.00 0.00 0.00 3.28
6578 9109 1.348036 CGAGGAAGGTGGAGGAAGTTT 59.652 52.381 0.00 0.00 0.00 2.66
6616 9147 5.654650 TCATCAACACCAAAACACTTAAGGT 59.345 36.000 7.53 0.00 0.00 3.50
6661 9192 4.240881 AGATGCTTGCTTATGGGAAGAA 57.759 40.909 6.09 0.00 44.60 2.52
6715 9246 2.961522 TTTTGCGGACGACATTCTTC 57.038 45.000 0.00 0.00 0.00 2.87
6719 9250 2.159382 AGGATTTTTGCGGACGACATT 58.841 42.857 0.00 0.00 0.00 2.71
6721 9252 1.533731 GAAGGATTTTTGCGGACGACA 59.466 47.619 0.00 0.00 0.00 4.35
6724 9255 1.130561 GAGGAAGGATTTTTGCGGACG 59.869 52.381 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.