Multiple sequence alignment - TraesCS1A01G368800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G368800 chr1A 100.000 4208 0 0 1 4208 546517681 546513474 0.000000e+00 7771.0
1 TraesCS1A01G368800 chr1A 93.506 77 4 1 3833 3909 554989651 554989576 3.440000e-21 113.0
2 TraesCS1A01G368800 chr1D 93.820 1602 68 20 765 2345 451958025 451956434 0.000000e+00 2381.0
3 TraesCS1A01G368800 chr1D 89.801 1206 61 14 3035 4208 451955479 451954304 0.000000e+00 1489.0
4 TraesCS1A01G368800 chr1D 90.440 659 48 5 2385 3036 451956322 451955672 0.000000e+00 854.0
5 TraesCS1A01G368800 chr1D 90.244 123 10 2 591 712 451959644 451959523 4.350000e-35 159.0
6 TraesCS1A01G368800 chr1D 91.111 45 4 0 2344 2388 451956399 451956355 1.260000e-05 62.1
7 TraesCS1A01G368800 chr1B 93.849 1577 72 14 778 2345 621957211 621955651 0.000000e+00 2351.0
8 TraesCS1A01G368800 chr1B 92.450 702 41 10 2344 3036 621955616 621954918 0.000000e+00 992.0
9 TraesCS1A01G368800 chr1B 94.131 443 23 2 3035 3474 621954726 621954284 0.000000e+00 671.0
10 TraesCS1A01G368800 chr1B 96.073 331 12 1 3509 3839 621954282 621953953 4.790000e-149 538.0
11 TraesCS1A01G368800 chr1B 82.875 327 24 10 3910 4206 621953964 621953640 8.970000e-67 265.0
12 TraesCS1A01G368800 chr5A 82.576 132 14 8 559 681 448595599 448595730 1.600000e-19 108.0
13 TraesCS1A01G368800 chr5B 91.139 79 6 1 3832 3909 711256495 711256573 5.750000e-19 106.0
14 TraesCS1A01G368800 chr5B 95.455 66 2 1 3843 3907 38027309 38027244 2.070000e-18 104.0
15 TraesCS1A01G368800 chr4A 92.754 69 3 2 3843 3909 565325640 565325572 9.630000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G368800 chr1A 546513474 546517681 4207 True 7771.00 7771 100.0000 1 4208 1 chr1A.!!$R1 4207
1 TraesCS1A01G368800 chr1D 451954304 451959644 5340 True 989.02 2381 91.0832 591 4208 5 chr1D.!!$R1 3617
2 TraesCS1A01G368800 chr1B 621953640 621957211 3571 True 963.40 2351 91.8756 778 4206 5 chr1B.!!$R1 3428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.031449 GGGTATGAGCGTGAGAGAGC 59.969 60.000 0.00 0.00 0.00 4.09 F
236 237 0.039437 AGCGGACTGTTACAGACGTG 60.039 55.000 20.07 9.91 37.55 4.49 F
237 238 0.318445 GCGGACTGTTACAGACGTGT 60.318 55.000 20.07 0.00 41.06 4.49 F
411 412 0.320946 AACCGGATACCAACCACGTG 60.321 55.000 9.46 9.08 0.00 4.49 F
420 421 0.872388 CCAACCACGTGTTTCTAGCC 59.128 55.000 15.65 0.00 34.00 3.93 F
1412 2887 1.030488 TTCACGGCGGAGACTAGAGG 61.030 60.000 13.24 0.00 0.00 3.69 F
1482 2957 1.276844 GTTCGATGCACGCCTATGC 59.723 57.895 0.00 0.00 46.32 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 3054 0.033366 GGCAGCAAACGGGAAAATGT 59.967 50.000 0.00 0.00 0.00 2.71 R
1699 3181 2.293677 TCAGTTATCAGCGACGCAAT 57.706 45.000 23.70 16.82 0.00 3.56 R
1860 3345 2.519013 AGAAACTTCCTTGCATCCCAC 58.481 47.619 0.00 0.00 0.00 4.61 R
2331 3826 2.024655 ACCTCATGAATGACAAGGCCAT 60.025 45.455 5.01 0.00 31.59 4.40 R
2378 3909 2.993220 CAGCGTCACTGCACAACTATAA 59.007 45.455 0.00 0.00 40.19 0.98 R
3153 4937 0.250553 TACAACCAACAAGGGCTCCG 60.251 55.000 0.00 0.00 43.89 4.63 R
3333 5118 1.476488 ACCAGCAAAGAACAACACACC 59.524 47.619 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.129737 GAGCAGCGTCGGGTAGCA 62.130 66.667 0.00 0.00 35.48 3.49
21 22 3.642778 GAGCAGCGTCGGGTAGCAA 62.643 63.158 0.00 0.00 35.48 3.91
22 23 2.511600 GCAGCGTCGGGTAGCAAT 60.512 61.111 0.00 0.00 35.48 3.56
23 24 2.813179 GCAGCGTCGGGTAGCAATG 61.813 63.158 0.00 0.00 35.48 2.82
24 25 2.511600 AGCGTCGGGTAGCAATGC 60.512 61.111 0.00 0.00 35.48 3.56
25 26 2.817834 GCGTCGGGTAGCAATGCA 60.818 61.111 8.35 0.00 0.00 3.96
26 27 2.180204 GCGTCGGGTAGCAATGCAT 61.180 57.895 8.35 0.00 0.00 3.96
27 28 1.643292 CGTCGGGTAGCAATGCATG 59.357 57.895 8.35 0.00 0.00 4.06
28 29 1.089481 CGTCGGGTAGCAATGCATGT 61.089 55.000 8.35 0.00 0.00 3.21
29 30 0.378257 GTCGGGTAGCAATGCATGTG 59.622 55.000 8.35 2.08 0.00 3.21
30 31 1.064621 CGGGTAGCAATGCATGTGC 59.935 57.895 19.73 19.73 42.55 4.57
40 41 3.213264 GCATGTGCAAGGGGATGG 58.787 61.111 0.00 0.00 41.59 3.51
41 42 2.428925 GCATGTGCAAGGGGATGGG 61.429 63.158 0.00 0.00 41.59 4.00
42 43 1.759299 CATGTGCAAGGGGATGGGG 60.759 63.158 0.00 0.00 0.00 4.96
43 44 3.012775 ATGTGCAAGGGGATGGGGG 62.013 63.158 0.00 0.00 0.00 5.40
72 73 2.847201 TCACCCATGACTGTGTGGA 58.153 52.632 9.69 0.00 37.72 4.02
73 74 0.686789 TCACCCATGACTGTGTGGAG 59.313 55.000 9.69 4.02 37.72 3.86
74 75 0.686789 CACCCATGACTGTGTGGAGA 59.313 55.000 9.69 0.00 37.72 3.71
75 76 0.979665 ACCCATGACTGTGTGGAGAG 59.020 55.000 9.69 0.00 37.72 3.20
76 77 1.269958 CCCATGACTGTGTGGAGAGA 58.730 55.000 9.69 0.00 37.72 3.10
77 78 1.836166 CCCATGACTGTGTGGAGAGAT 59.164 52.381 9.69 0.00 37.72 2.75
78 79 2.158986 CCCATGACTGTGTGGAGAGATC 60.159 54.545 9.69 0.00 37.72 2.75
79 80 2.498885 CCATGACTGTGTGGAGAGATCA 59.501 50.000 0.00 0.00 37.72 2.92
80 81 3.134262 CCATGACTGTGTGGAGAGATCAT 59.866 47.826 0.00 0.00 37.72 2.45
81 82 4.370049 CATGACTGTGTGGAGAGATCATC 58.630 47.826 0.00 0.00 0.00 2.92
82 83 3.434309 TGACTGTGTGGAGAGATCATCA 58.566 45.455 0.00 0.00 0.00 3.07
83 84 3.446516 TGACTGTGTGGAGAGATCATCAG 59.553 47.826 0.00 0.00 0.00 2.90
84 85 2.765135 ACTGTGTGGAGAGATCATCAGG 59.235 50.000 0.00 0.00 0.00 3.86
85 86 1.483827 TGTGTGGAGAGATCATCAGGC 59.516 52.381 0.00 0.00 0.00 4.85
86 87 1.483827 GTGTGGAGAGATCATCAGGCA 59.516 52.381 0.00 0.00 0.00 4.75
87 88 1.483827 TGTGGAGAGATCATCAGGCAC 59.516 52.381 0.00 0.00 0.00 5.01
88 89 1.483827 GTGGAGAGATCATCAGGCACA 59.516 52.381 0.00 0.00 0.00 4.57
89 90 2.093288 GTGGAGAGATCATCAGGCACAA 60.093 50.000 0.00 0.00 0.00 3.33
90 91 2.093288 TGGAGAGATCATCAGGCACAAC 60.093 50.000 0.00 0.00 0.00 3.32
91 92 2.093288 GGAGAGATCATCAGGCACAACA 60.093 50.000 0.00 0.00 0.00 3.33
92 93 2.935201 GAGAGATCATCAGGCACAACAC 59.065 50.000 0.00 0.00 0.00 3.32
93 94 2.303890 AGAGATCATCAGGCACAACACA 59.696 45.455 0.00 0.00 0.00 3.72
94 95 2.417933 GAGATCATCAGGCACAACACAC 59.582 50.000 0.00 0.00 0.00 3.82
95 96 2.153645 GATCATCAGGCACAACACACA 58.846 47.619 0.00 0.00 0.00 3.72
96 97 1.596603 TCATCAGGCACAACACACAG 58.403 50.000 0.00 0.00 0.00 3.66
97 98 0.594602 CATCAGGCACAACACACAGG 59.405 55.000 0.00 0.00 0.00 4.00
98 99 0.538057 ATCAGGCACAACACACAGGG 60.538 55.000 0.00 0.00 0.00 4.45
99 100 1.453745 CAGGCACAACACACAGGGT 60.454 57.895 0.00 0.00 0.00 4.34
107 108 4.284550 CACACAGGGTGGGGTGGG 62.285 72.222 0.00 0.00 44.04 4.61
123 124 3.950232 GGGGGTATGAGCGTGAGA 58.050 61.111 0.00 0.00 0.00 3.27
124 125 1.742768 GGGGGTATGAGCGTGAGAG 59.257 63.158 0.00 0.00 0.00 3.20
125 126 0.755698 GGGGGTATGAGCGTGAGAGA 60.756 60.000 0.00 0.00 0.00 3.10
126 127 0.671251 GGGGTATGAGCGTGAGAGAG 59.329 60.000 0.00 0.00 0.00 3.20
127 128 0.031449 GGGTATGAGCGTGAGAGAGC 59.969 60.000 0.00 0.00 0.00 4.09
129 130 2.222886 GGTATGAGCGTGAGAGAGCTA 58.777 52.381 0.00 0.00 44.69 3.32
130 131 2.225491 GGTATGAGCGTGAGAGAGCTAG 59.775 54.545 0.00 0.00 44.69 3.42
131 132 0.667993 ATGAGCGTGAGAGAGCTAGC 59.332 55.000 6.62 6.62 44.69 3.42
132 133 1.010125 GAGCGTGAGAGAGCTAGCG 60.010 63.158 9.55 0.00 44.69 4.26
133 134 1.433053 GAGCGTGAGAGAGCTAGCGA 61.433 60.000 9.55 0.00 44.69 4.93
134 135 0.817634 AGCGTGAGAGAGCTAGCGAT 60.818 55.000 9.55 1.05 42.60 4.58
135 136 0.869068 GCGTGAGAGAGCTAGCGATA 59.131 55.000 9.55 0.00 0.00 2.92
136 137 1.264557 GCGTGAGAGAGCTAGCGATAA 59.735 52.381 9.55 0.00 0.00 1.75
137 138 2.287069 GCGTGAGAGAGCTAGCGATAAA 60.287 50.000 9.55 0.00 0.00 1.40
138 139 3.550561 CGTGAGAGAGCTAGCGATAAAG 58.449 50.000 9.55 0.00 0.00 1.85
139 140 3.608241 CGTGAGAGAGCTAGCGATAAAGG 60.608 52.174 9.55 0.00 0.00 3.11
140 141 2.887783 TGAGAGAGCTAGCGATAAAGGG 59.112 50.000 9.55 0.00 0.00 3.95
141 142 3.150767 GAGAGAGCTAGCGATAAAGGGA 58.849 50.000 9.55 0.00 0.00 4.20
142 143 3.761752 GAGAGAGCTAGCGATAAAGGGAT 59.238 47.826 9.55 0.00 0.00 3.85
143 144 4.924625 AGAGAGCTAGCGATAAAGGGATA 58.075 43.478 9.55 0.00 0.00 2.59
144 145 5.326069 AGAGAGCTAGCGATAAAGGGATAA 58.674 41.667 9.55 0.00 0.00 1.75
145 146 5.955355 AGAGAGCTAGCGATAAAGGGATAAT 59.045 40.000 9.55 0.00 0.00 1.28
146 147 5.971763 AGAGCTAGCGATAAAGGGATAATG 58.028 41.667 9.55 0.00 0.00 1.90
147 148 5.091261 AGCTAGCGATAAAGGGATAATGG 57.909 43.478 9.55 0.00 0.00 3.16
148 149 4.777896 AGCTAGCGATAAAGGGATAATGGA 59.222 41.667 9.55 0.00 0.00 3.41
149 150 5.105146 AGCTAGCGATAAAGGGATAATGGAG 60.105 44.000 9.55 0.00 0.00 3.86
150 151 4.559862 AGCGATAAAGGGATAATGGAGG 57.440 45.455 0.00 0.00 0.00 4.30
151 152 4.168101 AGCGATAAAGGGATAATGGAGGA 58.832 43.478 0.00 0.00 0.00 3.71
152 153 4.223923 AGCGATAAAGGGATAATGGAGGAG 59.776 45.833 0.00 0.00 0.00 3.69
153 154 4.624125 GCGATAAAGGGATAATGGAGGAGG 60.624 50.000 0.00 0.00 0.00 4.30
154 155 4.777896 CGATAAAGGGATAATGGAGGAGGA 59.222 45.833 0.00 0.00 0.00 3.71
155 156 5.248477 CGATAAAGGGATAATGGAGGAGGAA 59.752 44.000 0.00 0.00 0.00 3.36
156 157 6.575254 CGATAAAGGGATAATGGAGGAGGAAG 60.575 46.154 0.00 0.00 0.00 3.46
157 158 3.734344 AGGGATAATGGAGGAGGAAGT 57.266 47.619 0.00 0.00 0.00 3.01
158 159 4.852991 AGGGATAATGGAGGAGGAAGTA 57.147 45.455 0.00 0.00 0.00 2.24
159 160 5.376653 AGGGATAATGGAGGAGGAAGTAT 57.623 43.478 0.00 0.00 0.00 2.12
160 161 6.500490 AGGGATAATGGAGGAGGAAGTATA 57.500 41.667 0.00 0.00 0.00 1.47
161 162 7.074807 AGGGATAATGGAGGAGGAAGTATAT 57.925 40.000 0.00 0.00 0.00 0.86
162 163 6.905776 AGGGATAATGGAGGAGGAAGTATATG 59.094 42.308 0.00 0.00 0.00 1.78
163 164 6.408662 GGGATAATGGAGGAGGAAGTATATGC 60.409 46.154 0.00 0.00 0.00 3.14
164 165 4.543590 AATGGAGGAGGAAGTATATGCG 57.456 45.455 0.00 0.00 0.00 4.73
165 166 2.248248 TGGAGGAGGAAGTATATGCGG 58.752 52.381 0.00 0.00 0.00 5.69
166 167 2.158370 TGGAGGAGGAAGTATATGCGGA 60.158 50.000 0.00 0.00 0.00 5.54
167 168 2.231721 GGAGGAGGAAGTATATGCGGAC 59.768 54.545 0.00 0.00 0.00 4.79
168 169 2.891580 GAGGAGGAAGTATATGCGGACA 59.108 50.000 0.00 0.00 0.00 4.02
169 170 3.305720 AGGAGGAAGTATATGCGGACAA 58.694 45.455 0.00 0.00 0.00 3.18
170 171 3.904339 AGGAGGAAGTATATGCGGACAAT 59.096 43.478 0.00 0.00 0.00 2.71
171 172 5.084519 AGGAGGAAGTATATGCGGACAATA 58.915 41.667 0.00 0.00 0.00 1.90
172 173 5.186021 AGGAGGAAGTATATGCGGACAATAG 59.814 44.000 0.00 0.00 0.00 1.73
173 174 5.047235 GGAGGAAGTATATGCGGACAATAGT 60.047 44.000 0.00 0.00 0.00 2.12
174 175 6.420913 AGGAAGTATATGCGGACAATAGTT 57.579 37.500 2.12 2.12 0.00 2.24
175 176 6.827727 AGGAAGTATATGCGGACAATAGTTT 58.172 36.000 3.65 0.00 0.00 2.66
176 177 6.929606 AGGAAGTATATGCGGACAATAGTTTC 59.070 38.462 3.65 2.28 0.00 2.78
177 178 6.704493 GGAAGTATATGCGGACAATAGTTTCA 59.296 38.462 3.65 0.00 0.00 2.69
178 179 7.225931 GGAAGTATATGCGGACAATAGTTTCAA 59.774 37.037 3.65 0.00 0.00 2.69
179 180 7.478520 AGTATATGCGGACAATAGTTTCAAC 57.521 36.000 0.00 0.00 0.00 3.18
180 181 3.740044 ATGCGGACAATAGTTTCAACG 57.260 42.857 0.00 0.00 0.00 4.10
181 182 1.801771 TGCGGACAATAGTTTCAACGG 59.198 47.619 0.00 0.00 0.00 4.44
182 183 2.070783 GCGGACAATAGTTTCAACGGA 58.929 47.619 0.00 0.00 0.00 4.69
183 184 2.481185 GCGGACAATAGTTTCAACGGAA 59.519 45.455 0.00 0.00 0.00 4.30
184 185 3.058777 GCGGACAATAGTTTCAACGGAAA 60.059 43.478 0.00 0.00 40.60 3.13
185 186 4.379082 GCGGACAATAGTTTCAACGGAAAT 60.379 41.667 0.00 0.00 44.32 2.17
186 187 5.163834 GCGGACAATAGTTTCAACGGAAATA 60.164 40.000 0.00 0.00 44.32 1.40
187 188 6.621164 GCGGACAATAGTTTCAACGGAAATAA 60.621 38.462 0.00 0.00 44.32 1.40
188 189 6.959311 CGGACAATAGTTTCAACGGAAATAAG 59.041 38.462 0.00 0.00 44.32 1.73
189 190 7.360607 CGGACAATAGTTTCAACGGAAATAAGT 60.361 37.037 0.00 0.00 44.32 2.24
190 191 7.961283 GGACAATAGTTTCAACGGAAATAAGTC 59.039 37.037 0.00 0.00 44.32 3.01
191 192 8.385898 ACAATAGTTTCAACGGAAATAAGTCA 57.614 30.769 0.00 0.00 44.32 3.41
192 193 8.842280 ACAATAGTTTCAACGGAAATAAGTCAA 58.158 29.630 0.00 0.00 44.32 3.18
193 194 9.329913 CAATAGTTTCAACGGAAATAAGTCAAG 57.670 33.333 0.00 0.00 44.32 3.02
194 195 8.842358 ATAGTTTCAACGGAAATAAGTCAAGA 57.158 30.769 0.00 0.00 44.32 3.02
195 196 7.190920 AGTTTCAACGGAAATAAGTCAAGAG 57.809 36.000 0.00 0.00 44.32 2.85
196 197 6.990349 AGTTTCAACGGAAATAAGTCAAGAGA 59.010 34.615 0.00 0.00 44.32 3.10
197 198 7.497909 AGTTTCAACGGAAATAAGTCAAGAGAA 59.502 33.333 0.00 0.00 44.32 2.87
198 199 7.421530 TTCAACGGAAATAAGTCAAGAGAAG 57.578 36.000 0.00 0.00 0.00 2.85
199 200 6.755206 TCAACGGAAATAAGTCAAGAGAAGA 58.245 36.000 0.00 0.00 0.00 2.87
200 201 7.386851 TCAACGGAAATAAGTCAAGAGAAGAT 58.613 34.615 0.00 0.00 0.00 2.40
201 202 7.878127 TCAACGGAAATAAGTCAAGAGAAGATT 59.122 33.333 0.00 0.00 0.00 2.40
202 203 7.602517 ACGGAAATAAGTCAAGAGAAGATTG 57.397 36.000 0.00 0.00 0.00 2.67
203 204 7.386851 ACGGAAATAAGTCAAGAGAAGATTGA 58.613 34.615 0.00 0.00 34.37 2.57
204 205 7.878127 ACGGAAATAAGTCAAGAGAAGATTGAA 59.122 33.333 0.00 0.00 38.34 2.69
205 206 8.721478 CGGAAATAAGTCAAGAGAAGATTGAAA 58.279 33.333 0.00 0.00 38.34 2.69
209 210 6.890979 AAGTCAAGAGAAGATTGAAAAGGG 57.109 37.500 0.00 0.00 38.34 3.95
210 211 5.946486 AGTCAAGAGAAGATTGAAAAGGGT 58.054 37.500 0.00 0.00 38.34 4.34
211 212 5.767168 AGTCAAGAGAAGATTGAAAAGGGTG 59.233 40.000 0.00 0.00 38.34 4.61
212 213 4.520492 TCAAGAGAAGATTGAAAAGGGTGC 59.480 41.667 0.00 0.00 33.85 5.01
213 214 4.104383 AGAGAAGATTGAAAAGGGTGCA 57.896 40.909 0.00 0.00 0.00 4.57
214 215 3.823304 AGAGAAGATTGAAAAGGGTGCAC 59.177 43.478 8.80 8.80 0.00 4.57
215 216 3.565307 AGAAGATTGAAAAGGGTGCACA 58.435 40.909 20.43 0.00 0.00 4.57
216 217 4.154942 AGAAGATTGAAAAGGGTGCACAT 58.845 39.130 20.43 3.17 0.00 3.21
217 218 5.324409 AGAAGATTGAAAAGGGTGCACATA 58.676 37.500 20.43 0.00 0.00 2.29
218 219 5.416952 AGAAGATTGAAAAGGGTGCACATAG 59.583 40.000 20.43 0.00 0.00 2.23
219 220 3.445096 AGATTGAAAAGGGTGCACATAGC 59.555 43.478 20.43 0.00 45.96 2.97
230 231 2.004583 GCACATAGCGGACTGTTACA 57.995 50.000 0.00 0.00 0.00 2.41
231 232 1.927174 GCACATAGCGGACTGTTACAG 59.073 52.381 11.21 11.21 37.52 2.74
232 233 2.416836 GCACATAGCGGACTGTTACAGA 60.417 50.000 20.07 0.00 35.18 3.41
233 234 3.179830 CACATAGCGGACTGTTACAGAC 58.820 50.000 20.07 12.89 35.18 3.51
234 235 2.159421 ACATAGCGGACTGTTACAGACG 60.159 50.000 20.07 21.24 37.97 4.18
235 236 1.527034 TAGCGGACTGTTACAGACGT 58.473 50.000 20.07 14.11 37.55 4.34
236 237 0.039437 AGCGGACTGTTACAGACGTG 60.039 55.000 20.07 9.91 37.55 4.49
237 238 0.318445 GCGGACTGTTACAGACGTGT 60.318 55.000 20.07 0.00 41.06 4.49
238 239 1.405461 CGGACTGTTACAGACGTGTG 58.595 55.000 20.07 11.72 37.52 3.82
239 240 1.268896 CGGACTGTTACAGACGTGTGT 60.269 52.381 22.75 22.75 37.52 3.72
240 241 2.031769 CGGACTGTTACAGACGTGTGTA 60.032 50.000 20.52 20.52 37.52 2.90
241 242 3.562505 GGACTGTTACAGACGTGTGTAG 58.437 50.000 22.71 16.92 37.52 2.74
242 243 3.562505 GACTGTTACAGACGTGTGTAGG 58.437 50.000 22.71 18.53 37.52 3.18
243 244 3.216800 ACTGTTACAGACGTGTGTAGGA 58.783 45.455 22.71 13.70 37.52 2.94
244 245 3.004106 ACTGTTACAGACGTGTGTAGGAC 59.996 47.826 22.71 19.42 37.52 3.85
245 246 2.950975 TGTTACAGACGTGTGTAGGACA 59.049 45.455 22.71 21.43 37.52 4.02
246 247 3.380954 TGTTACAGACGTGTGTAGGACAA 59.619 43.478 22.71 9.44 37.52 3.18
247 248 4.142204 TGTTACAGACGTGTGTAGGACAAA 60.142 41.667 22.71 8.75 37.52 2.83
248 249 3.746045 ACAGACGTGTGTAGGACAAAT 57.254 42.857 17.81 0.00 35.91 2.32
249 250 4.067972 ACAGACGTGTGTAGGACAAATT 57.932 40.909 17.81 0.00 35.91 1.82
250 251 4.448210 ACAGACGTGTGTAGGACAAATTT 58.552 39.130 17.81 0.00 35.91 1.82
251 252 4.879545 ACAGACGTGTGTAGGACAAATTTT 59.120 37.500 17.81 0.00 35.91 1.82
252 253 6.050432 ACAGACGTGTGTAGGACAAATTTTA 58.950 36.000 17.81 0.00 35.91 1.52
253 254 6.539464 ACAGACGTGTGTAGGACAAATTTTAA 59.461 34.615 17.81 0.00 35.91 1.52
254 255 7.227910 ACAGACGTGTGTAGGACAAATTTTAAT 59.772 33.333 17.81 0.00 35.91 1.40
255 256 8.073768 CAGACGTGTGTAGGACAAATTTTAATT 58.926 33.333 4.19 0.00 35.91 1.40
256 257 8.073768 AGACGTGTGTAGGACAAATTTTAATTG 58.926 33.333 0.00 0.00 35.91 2.32
257 258 6.639279 ACGTGTGTAGGACAAATTTTAATTGC 59.361 34.615 0.00 0.00 35.91 3.56
258 259 6.638873 CGTGTGTAGGACAAATTTTAATTGCA 59.361 34.615 0.00 0.00 35.91 4.08
259 260 7.358023 CGTGTGTAGGACAAATTTTAATTGCAC 60.358 37.037 0.00 0.00 35.91 4.57
260 261 6.638873 TGTGTAGGACAAATTTTAATTGCACG 59.361 34.615 0.00 0.00 0.00 5.34
261 262 6.858993 GTGTAGGACAAATTTTAATTGCACGA 59.141 34.615 0.00 0.00 0.00 4.35
262 263 7.540745 GTGTAGGACAAATTTTAATTGCACGAT 59.459 33.333 0.00 0.00 0.00 3.73
263 264 6.949578 AGGACAAATTTTAATTGCACGATG 57.050 33.333 0.00 0.00 0.00 3.84
264 265 6.454795 AGGACAAATTTTAATTGCACGATGT 58.545 32.000 0.00 0.00 0.00 3.06
265 266 6.365789 AGGACAAATTTTAATTGCACGATGTG 59.634 34.615 0.00 0.00 36.51 3.21
266 267 6.364706 GGACAAATTTTAATTGCACGATGTGA 59.635 34.615 0.24 0.00 35.23 3.58
267 268 7.337150 ACAAATTTTAATTGCACGATGTGAG 57.663 32.000 0.24 0.00 35.23 3.51
268 269 6.128849 ACAAATTTTAATTGCACGATGTGAGC 60.129 34.615 0.24 0.00 35.23 4.26
269 270 2.804421 TTAATTGCACGATGTGAGCG 57.196 45.000 0.24 0.00 36.92 5.03
270 271 2.003196 TAATTGCACGATGTGAGCGA 57.997 45.000 0.24 0.00 36.92 4.93
271 272 1.372582 AATTGCACGATGTGAGCGAT 58.627 45.000 0.24 0.00 39.64 4.58
272 273 0.654160 ATTGCACGATGTGAGCGATG 59.346 50.000 0.24 0.00 36.97 3.84
273 274 1.969809 TTGCACGATGTGAGCGATGC 61.970 55.000 0.24 0.00 36.92 3.91
274 275 2.455291 GCACGATGTGAGCGATGCA 61.455 57.895 0.24 0.00 35.23 3.96
275 276 1.346197 CACGATGTGAGCGATGCAC 59.654 57.895 0.00 0.00 35.23 4.57
292 293 5.878332 ATGCACACATCTTTTGAATACGA 57.122 34.783 0.00 0.00 0.00 3.43
293 294 5.681337 TGCACACATCTTTTGAATACGAA 57.319 34.783 0.00 0.00 0.00 3.85
294 295 6.252967 TGCACACATCTTTTGAATACGAAT 57.747 33.333 0.00 0.00 0.00 3.34
295 296 6.314018 TGCACACATCTTTTGAATACGAATC 58.686 36.000 0.00 0.00 0.00 2.52
296 297 6.149308 TGCACACATCTTTTGAATACGAATCT 59.851 34.615 0.00 0.00 0.00 2.40
297 298 7.333174 TGCACACATCTTTTGAATACGAATCTA 59.667 33.333 0.00 0.00 0.00 1.98
298 299 8.175069 GCACACATCTTTTGAATACGAATCTAA 58.825 33.333 0.00 0.00 0.00 2.10
301 302 9.655769 CACATCTTTTGAATACGAATCTAATGG 57.344 33.333 0.00 0.00 0.00 3.16
302 303 9.396022 ACATCTTTTGAATACGAATCTAATGGT 57.604 29.630 0.00 0.00 0.00 3.55
333 334 9.936759 TGTGTCATATAACTCATACTTTGTTCA 57.063 29.630 0.00 0.00 0.00 3.18
335 336 9.378551 TGTCATATAACTCATACTTTGTTCACC 57.621 33.333 0.00 0.00 0.00 4.02
336 337 8.827677 GTCATATAACTCATACTTTGTTCACCC 58.172 37.037 0.00 0.00 0.00 4.61
337 338 8.544622 TCATATAACTCATACTTTGTTCACCCA 58.455 33.333 0.00 0.00 0.00 4.51
338 339 9.173021 CATATAACTCATACTTTGTTCACCCAA 57.827 33.333 0.00 0.00 0.00 4.12
339 340 9.747898 ATATAACTCATACTTTGTTCACCCAAA 57.252 29.630 0.00 0.00 33.50 3.28
340 341 6.976934 AACTCATACTTTGTTCACCCAAAT 57.023 33.333 0.00 0.00 34.07 2.32
341 342 6.976934 ACTCATACTTTGTTCACCCAAATT 57.023 33.333 0.00 0.00 34.07 1.82
342 343 8.472007 AACTCATACTTTGTTCACCCAAATTA 57.528 30.769 0.00 0.00 34.07 1.40
343 344 8.110860 ACTCATACTTTGTTCACCCAAATTAG 57.889 34.615 0.00 0.00 34.07 1.73
344 345 7.176690 ACTCATACTTTGTTCACCCAAATTAGG 59.823 37.037 0.00 0.00 34.07 2.69
345 346 7.235079 TCATACTTTGTTCACCCAAATTAGGA 58.765 34.615 1.53 0.00 34.07 2.94
346 347 7.893302 TCATACTTTGTTCACCCAAATTAGGAT 59.107 33.333 1.53 0.00 34.07 3.24
347 348 6.994421 ACTTTGTTCACCCAAATTAGGATT 57.006 33.333 1.53 0.00 34.07 3.01
348 349 9.762381 ATACTTTGTTCACCCAAATTAGGATTA 57.238 29.630 1.53 0.00 34.07 1.75
349 350 8.122472 ACTTTGTTCACCCAAATTAGGATTAG 57.878 34.615 1.53 0.00 34.07 1.73
350 351 7.947890 ACTTTGTTCACCCAAATTAGGATTAGA 59.052 33.333 1.53 0.00 34.07 2.10
351 352 8.713708 TTTGTTCACCCAAATTAGGATTAGAA 57.286 30.769 1.53 0.00 29.67 2.10
352 353 8.893563 TTGTTCACCCAAATTAGGATTAGAAT 57.106 30.769 1.53 0.00 0.00 2.40
353 354 8.893563 TGTTCACCCAAATTAGGATTAGAATT 57.106 30.769 1.53 0.00 0.00 2.17
354 355 8.966868 TGTTCACCCAAATTAGGATTAGAATTC 58.033 33.333 0.00 0.00 0.00 2.17
355 356 7.801716 TCACCCAAATTAGGATTAGAATTCG 57.198 36.000 0.00 0.00 0.00 3.34
356 357 7.570132 TCACCCAAATTAGGATTAGAATTCGA 58.430 34.615 0.00 0.00 0.00 3.71
357 358 7.715249 TCACCCAAATTAGGATTAGAATTCGAG 59.285 37.037 0.00 0.00 0.00 4.04
358 359 6.998673 ACCCAAATTAGGATTAGAATTCGAGG 59.001 38.462 0.00 0.00 0.00 4.63
359 360 6.431234 CCCAAATTAGGATTAGAATTCGAGGG 59.569 42.308 0.00 0.00 31.18 4.30
360 361 6.431234 CCAAATTAGGATTAGAATTCGAGGGG 59.569 42.308 0.00 0.00 0.00 4.79
361 362 4.618920 TTAGGATTAGAATTCGAGGGGC 57.381 45.455 0.00 0.00 0.00 5.80
362 363 2.408565 AGGATTAGAATTCGAGGGGCA 58.591 47.619 0.00 0.00 0.00 5.36
363 364 2.982488 AGGATTAGAATTCGAGGGGCAT 59.018 45.455 0.00 0.00 0.00 4.40
364 365 3.395941 AGGATTAGAATTCGAGGGGCATT 59.604 43.478 0.00 0.00 0.00 3.56
365 366 4.597507 AGGATTAGAATTCGAGGGGCATTA 59.402 41.667 0.00 0.00 0.00 1.90
366 367 4.695928 GGATTAGAATTCGAGGGGCATTAC 59.304 45.833 0.00 0.00 0.00 1.89
367 368 4.764050 TTAGAATTCGAGGGGCATTACA 57.236 40.909 0.00 0.00 0.00 2.41
368 369 3.864789 AGAATTCGAGGGGCATTACAT 57.135 42.857 0.00 0.00 0.00 2.29
369 370 4.170468 AGAATTCGAGGGGCATTACATT 57.830 40.909 0.00 0.00 0.00 2.71
370 371 4.536765 AGAATTCGAGGGGCATTACATTT 58.463 39.130 0.00 0.00 0.00 2.32
371 372 4.956075 AGAATTCGAGGGGCATTACATTTT 59.044 37.500 0.00 0.00 0.00 1.82
372 373 6.126409 AGAATTCGAGGGGCATTACATTTTA 58.874 36.000 0.00 0.00 0.00 1.52
373 374 6.263168 AGAATTCGAGGGGCATTACATTTTAG 59.737 38.462 0.00 0.00 0.00 1.85
374 375 3.815809 TCGAGGGGCATTACATTTTAGG 58.184 45.455 0.00 0.00 0.00 2.69
375 376 3.456644 TCGAGGGGCATTACATTTTAGGA 59.543 43.478 0.00 0.00 0.00 2.94
376 377 4.080243 TCGAGGGGCATTACATTTTAGGAA 60.080 41.667 0.00 0.00 0.00 3.36
377 378 4.275936 CGAGGGGCATTACATTTTAGGAAG 59.724 45.833 0.00 0.00 0.00 3.46
378 379 4.546674 AGGGGCATTACATTTTAGGAAGG 58.453 43.478 0.00 0.00 0.00 3.46
379 380 4.231890 AGGGGCATTACATTTTAGGAAGGA 59.768 41.667 0.00 0.00 0.00 3.36
380 381 4.959839 GGGGCATTACATTTTAGGAAGGAA 59.040 41.667 0.00 0.00 0.00 3.36
381 382 5.069119 GGGGCATTACATTTTAGGAAGGAAG 59.931 44.000 0.00 0.00 0.00 3.46
382 383 5.656859 GGGCATTACATTTTAGGAAGGAAGT 59.343 40.000 0.00 0.00 0.00 3.01
383 384 6.831868 GGGCATTACATTTTAGGAAGGAAGTA 59.168 38.462 0.00 0.00 0.00 2.24
384 385 7.201794 GGGCATTACATTTTAGGAAGGAAGTAC 60.202 40.741 0.00 0.00 0.00 2.73
385 386 7.407337 GCATTACATTTTAGGAAGGAAGTACG 58.593 38.462 0.00 0.00 0.00 3.67
386 387 7.279313 GCATTACATTTTAGGAAGGAAGTACGA 59.721 37.037 0.00 0.00 0.00 3.43
387 388 9.326413 CATTACATTTTAGGAAGGAAGTACGAT 57.674 33.333 0.00 0.00 0.00 3.73
388 389 8.712285 TTACATTTTAGGAAGGAAGTACGATG 57.288 34.615 0.00 0.00 0.00 3.84
389 390 6.708285 ACATTTTAGGAAGGAAGTACGATGT 58.292 36.000 0.00 0.00 0.00 3.06
390 391 6.594159 ACATTTTAGGAAGGAAGTACGATGTG 59.406 38.462 0.00 0.00 0.00 3.21
391 392 5.733620 TTTAGGAAGGAAGTACGATGTGT 57.266 39.130 0.00 0.00 0.00 3.72
392 393 6.839124 TTTAGGAAGGAAGTACGATGTGTA 57.161 37.500 0.00 0.00 0.00 2.90
393 394 6.839124 TTAGGAAGGAAGTACGATGTGTAA 57.161 37.500 0.00 0.00 34.07 2.41
394 395 5.069501 AGGAAGGAAGTACGATGTGTAAC 57.930 43.478 0.00 0.00 34.07 2.50
395 396 4.081807 AGGAAGGAAGTACGATGTGTAACC 60.082 45.833 0.00 0.00 34.07 2.85
396 397 3.498927 AGGAAGTACGATGTGTAACCG 57.501 47.619 0.00 0.00 34.07 4.44
397 398 2.165030 AGGAAGTACGATGTGTAACCGG 59.835 50.000 0.00 0.00 34.07 5.28
398 399 2.164219 GGAAGTACGATGTGTAACCGGA 59.836 50.000 9.46 0.00 34.07 5.14
399 400 3.181483 GGAAGTACGATGTGTAACCGGAT 60.181 47.826 9.46 0.00 34.07 4.18
400 401 4.036734 GGAAGTACGATGTGTAACCGGATA 59.963 45.833 9.46 0.00 34.07 2.59
401 402 4.558538 AGTACGATGTGTAACCGGATAC 57.441 45.455 9.46 12.63 34.07 2.24
402 403 2.877043 ACGATGTGTAACCGGATACC 57.123 50.000 18.20 10.56 34.36 2.73
403 404 2.101783 ACGATGTGTAACCGGATACCA 58.898 47.619 18.20 15.23 34.36 3.25
404 405 2.496871 ACGATGTGTAACCGGATACCAA 59.503 45.455 18.20 7.61 34.36 3.67
405 406 2.861935 CGATGTGTAACCGGATACCAAC 59.138 50.000 18.20 11.51 34.36 3.77
406 407 2.766345 TGTGTAACCGGATACCAACC 57.234 50.000 18.20 5.45 34.36 3.77
407 408 1.976404 TGTGTAACCGGATACCAACCA 59.024 47.619 18.20 7.73 34.36 3.67
408 409 2.289569 TGTGTAACCGGATACCAACCAC 60.290 50.000 18.20 10.25 34.36 4.16
409 410 1.067000 TGTAACCGGATACCAACCACG 60.067 52.381 18.20 0.00 0.00 4.94
410 411 1.066929 GTAACCGGATACCAACCACGT 60.067 52.381 9.46 0.00 0.00 4.49
411 412 0.320946 AACCGGATACCAACCACGTG 60.321 55.000 9.46 9.08 0.00 4.49
412 413 1.294138 CCGGATACCAACCACGTGT 59.706 57.895 15.65 0.00 0.00 4.49
413 414 0.320946 CCGGATACCAACCACGTGTT 60.321 55.000 15.65 6.19 37.80 3.32
414 415 1.515081 CGGATACCAACCACGTGTTT 58.485 50.000 15.65 2.97 34.00 2.83
415 416 1.461897 CGGATACCAACCACGTGTTTC 59.538 52.381 15.65 0.00 34.00 2.78
416 417 2.774687 GGATACCAACCACGTGTTTCT 58.225 47.619 15.65 0.00 34.00 2.52
417 418 3.614630 CGGATACCAACCACGTGTTTCTA 60.615 47.826 15.65 0.00 34.00 2.10
418 419 3.930848 GGATACCAACCACGTGTTTCTAG 59.069 47.826 15.65 0.00 34.00 2.43
419 420 1.589803 ACCAACCACGTGTTTCTAGC 58.410 50.000 15.65 0.00 34.00 3.42
420 421 0.872388 CCAACCACGTGTTTCTAGCC 59.128 55.000 15.65 0.00 34.00 3.93
421 422 1.588674 CAACCACGTGTTTCTAGCCA 58.411 50.000 15.65 0.00 34.00 4.75
422 423 2.151202 CAACCACGTGTTTCTAGCCAT 58.849 47.619 15.65 0.00 34.00 4.40
423 424 3.331150 CAACCACGTGTTTCTAGCCATA 58.669 45.455 15.65 0.00 34.00 2.74
424 425 3.906720 ACCACGTGTTTCTAGCCATAT 57.093 42.857 15.65 0.00 0.00 1.78
425 426 3.531538 ACCACGTGTTTCTAGCCATATG 58.468 45.455 15.65 0.00 0.00 1.78
426 427 3.055385 ACCACGTGTTTCTAGCCATATGT 60.055 43.478 15.65 0.00 0.00 2.29
427 428 3.309682 CCACGTGTTTCTAGCCATATGTG 59.690 47.826 15.65 0.00 0.00 3.21
461 462 9.674068 TTTGGCACATTCTACACTATTATAACA 57.326 29.630 0.00 0.00 39.30 2.41
462 463 9.845740 TTGGCACATTCTACACTATTATAACAT 57.154 29.630 0.00 0.00 39.30 2.71
463 464 9.489084 TGGCACATTCTACACTATTATAACATC 57.511 33.333 0.00 0.00 0.00 3.06
464 465 9.712305 GGCACATTCTACACTATTATAACATCT 57.288 33.333 0.00 0.00 0.00 2.90
505 506 9.596308 ACATTTTTAAACAAATCCTACCCTAGT 57.404 29.630 0.00 0.00 0.00 2.57
508 509 9.519191 TTTTTAAACAAATCCTACCCTAGTACC 57.481 33.333 0.00 0.00 0.00 3.34
509 510 5.705397 AAACAAATCCTACCCTAGTACCC 57.295 43.478 0.00 0.00 0.00 3.69
510 511 4.639019 ACAAATCCTACCCTAGTACCCT 57.361 45.455 0.00 0.00 0.00 4.34
511 512 5.756314 ACAAATCCTACCCTAGTACCCTA 57.244 43.478 0.00 0.00 0.00 3.53
512 513 5.462240 ACAAATCCTACCCTAGTACCCTAC 58.538 45.833 0.00 0.00 0.00 3.18
513 514 5.197395 ACAAATCCTACCCTAGTACCCTACT 59.803 44.000 0.00 0.00 42.68 2.57
514 515 6.394039 ACAAATCCTACCCTAGTACCCTACTA 59.606 42.308 0.00 0.00 40.14 1.82
515 516 7.076045 ACAAATCCTACCCTAGTACCCTACTAT 59.924 40.741 0.00 0.00 40.25 2.12
516 517 6.655376 ATCCTACCCTAGTACCCTACTATG 57.345 45.833 0.00 0.00 40.25 2.23
517 518 5.741656 TCCTACCCTAGTACCCTACTATGA 58.258 45.833 0.00 0.00 40.25 2.15
518 519 5.789575 TCCTACCCTAGTACCCTACTATGAG 59.210 48.000 0.00 0.00 40.25 2.90
519 520 5.789575 CCTACCCTAGTACCCTACTATGAGA 59.210 48.000 0.00 0.00 40.25 3.27
520 521 5.846528 ACCCTAGTACCCTACTATGAGAG 57.153 47.826 0.00 0.00 40.25 3.20
521 522 4.043184 ACCCTAGTACCCTACTATGAGAGC 59.957 50.000 0.00 0.00 40.25 4.09
522 523 4.043059 CCCTAGTACCCTACTATGAGAGCA 59.957 50.000 0.00 0.00 40.25 4.26
523 524 5.457778 CCCTAGTACCCTACTATGAGAGCAA 60.458 48.000 0.00 0.00 40.25 3.91
524 525 5.474189 CCTAGTACCCTACTATGAGAGCAAC 59.526 48.000 0.00 0.00 40.25 4.17
525 526 5.132043 AGTACCCTACTATGAGAGCAACT 57.868 43.478 0.00 0.00 37.23 3.16
526 527 6.263412 AGTACCCTACTATGAGAGCAACTA 57.737 41.667 0.00 0.00 37.23 2.24
527 528 6.854578 AGTACCCTACTATGAGAGCAACTAT 58.145 40.000 0.00 0.00 37.23 2.12
528 529 7.986704 AGTACCCTACTATGAGAGCAACTATA 58.013 38.462 0.00 0.00 37.23 1.31
529 530 8.446394 AGTACCCTACTATGAGAGCAACTATAA 58.554 37.037 0.00 0.00 37.23 0.98
530 531 9.245481 GTACCCTACTATGAGAGCAACTATAAT 57.755 37.037 0.00 0.00 0.00 1.28
532 533 9.824216 ACCCTACTATGAGAGCAACTATAATAA 57.176 33.333 0.00 0.00 0.00 1.40
572 573 9.317827 TGTTATAAGAGTTAAGAGTTACCACCT 57.682 33.333 0.00 0.00 0.00 4.00
573 574 9.800433 GTTATAAGAGTTAAGAGTTACCACCTC 57.200 37.037 0.00 0.00 0.00 3.85
574 575 9.537852 TTATAAGAGTTAAGAGTTACCACCTCA 57.462 33.333 0.00 0.00 0.00 3.86
575 576 5.986501 AGAGTTAAGAGTTACCACCTCAG 57.013 43.478 0.00 0.00 0.00 3.35
576 577 5.642165 AGAGTTAAGAGTTACCACCTCAGA 58.358 41.667 0.00 0.00 0.00 3.27
577 578 6.257586 AGAGTTAAGAGTTACCACCTCAGAT 58.742 40.000 0.00 0.00 0.00 2.90
578 579 6.726764 AGAGTTAAGAGTTACCACCTCAGATT 59.273 38.462 0.00 0.00 0.00 2.40
579 580 7.235812 AGAGTTAAGAGTTACCACCTCAGATTT 59.764 37.037 0.00 0.00 0.00 2.17
580 581 8.431910 AGTTAAGAGTTACCACCTCAGATTTA 57.568 34.615 0.00 0.00 0.00 1.40
581 582 9.047947 AGTTAAGAGTTACCACCTCAGATTTAT 57.952 33.333 0.00 0.00 0.00 1.40
582 583 9.099454 GTTAAGAGTTACCACCTCAGATTTATG 57.901 37.037 0.00 0.00 0.00 1.90
583 584 7.496346 AAGAGTTACCACCTCAGATTTATGA 57.504 36.000 0.00 0.00 0.00 2.15
584 585 7.682787 AGAGTTACCACCTCAGATTTATGAT 57.317 36.000 0.00 0.00 0.00 2.45
585 586 7.504403 AGAGTTACCACCTCAGATTTATGATG 58.496 38.462 0.00 0.00 0.00 3.07
586 587 7.345653 AGAGTTACCACCTCAGATTTATGATGA 59.654 37.037 0.00 0.00 0.00 2.92
587 588 7.504403 AGTTACCACCTCAGATTTATGATGAG 58.496 38.462 0.00 0.00 40.13 2.90
594 595 5.549347 CTCAGATTTATGATGAGGTGGAGG 58.451 45.833 0.00 0.00 37.41 4.30
601 602 4.989875 ATGATGAGGTGGAGGAAATAGG 57.010 45.455 0.00 0.00 0.00 2.57
608 609 1.485066 GTGGAGGAAATAGGCGAGGAA 59.515 52.381 0.00 0.00 0.00 3.36
610 611 2.170607 TGGAGGAAATAGGCGAGGAAAG 59.829 50.000 0.00 0.00 0.00 2.62
642 643 5.648092 AGATGGGTTGTAAATAGTCAACTGC 59.352 40.000 7.72 0.00 42.15 4.40
644 645 5.133941 TGGGTTGTAAATAGTCAACTGCAA 58.866 37.500 7.72 0.00 42.15 4.08
692 693 5.370880 AGAGAATAATGTGGGGCTAATCACT 59.629 40.000 0.00 0.00 35.15 3.41
701 702 9.466497 AATGTGGGGCTAATCACTAATATTATG 57.534 33.333 0.00 0.00 35.15 1.90
702 703 7.984475 TGTGGGGCTAATCACTAATATTATGT 58.016 34.615 0.00 0.00 35.15 2.29
703 704 9.106977 TGTGGGGCTAATCACTAATATTATGTA 57.893 33.333 0.00 0.00 35.15 2.29
752 2223 4.647564 ATGTCCTGAAAGATTCACACCT 57.352 40.909 0.00 0.00 34.07 4.00
753 2224 4.437682 TGTCCTGAAAGATTCACACCTT 57.562 40.909 0.00 0.00 34.07 3.50
754 2225 4.792068 TGTCCTGAAAGATTCACACCTTT 58.208 39.130 0.00 0.00 34.07 3.11
755 2226 5.200483 TGTCCTGAAAGATTCACACCTTTT 58.800 37.500 0.00 0.00 34.07 2.27
756 2227 6.361433 TGTCCTGAAAGATTCACACCTTTTA 58.639 36.000 0.00 0.00 34.07 1.52
757 2228 7.004086 TGTCCTGAAAGATTCACACCTTTTAT 58.996 34.615 0.00 0.00 34.07 1.40
758 2229 7.174946 TGTCCTGAAAGATTCACACCTTTTATC 59.825 37.037 0.00 0.00 34.07 1.75
759 2230 7.391833 GTCCTGAAAGATTCACACCTTTTATCT 59.608 37.037 0.00 0.00 34.07 1.98
760 2231 8.602424 TCCTGAAAGATTCACACCTTTTATCTA 58.398 33.333 0.00 0.00 34.07 1.98
761 2232 9.231297 CCTGAAAGATTCACACCTTTTATCTAA 57.769 33.333 0.00 0.00 34.07 2.10
819 2290 2.908688 AAATCAAAACAGGTGCACCC 57.091 45.000 32.29 14.56 36.42 4.61
1200 2672 3.329889 TCCATCTGGTGCGCCCTT 61.330 61.111 15.15 0.00 36.34 3.95
1201 2673 2.825836 CCATCTGGTGCGCCCTTC 60.826 66.667 15.15 0.00 0.00 3.46
1202 2674 2.825836 CATCTGGTGCGCCCTTCC 60.826 66.667 15.15 2.77 0.00 3.46
1203 2675 4.115199 ATCTGGTGCGCCCTTCCC 62.115 66.667 15.15 0.00 0.00 3.97
1342 2817 2.658807 AGCGAAAGGGTTTCCTCTTT 57.341 45.000 0.00 0.00 44.07 2.52
1409 2884 1.226323 CGTTCACGGCGGAGACTAG 60.226 63.158 13.24 0.00 35.37 2.57
1412 2887 1.030488 TTCACGGCGGAGACTAGAGG 61.030 60.000 13.24 0.00 0.00 3.69
1463 2938 2.121116 ACGCAGACGAGGATTTATCG 57.879 50.000 0.00 0.00 43.93 2.92
1482 2957 1.276844 GTTCGATGCACGCCTATGC 59.723 57.895 0.00 0.00 46.32 3.14
1611 3087 3.465742 TGCTGCCAAAATAACTTGCAA 57.534 38.095 0.00 0.00 0.00 4.08
1636 3112 8.870075 AGAGATTAGTACTGCTTTTCCAAAAT 57.130 30.769 5.39 0.00 0.00 1.82
1646 3122 4.202141 TGCTTTTCCAAAATCACTCAGTGG 60.202 41.667 4.57 0.00 33.87 4.00
1663 3139 4.349636 TCAGTGGAACCAGAACTATTTCCA 59.650 41.667 10.41 10.41 44.21 3.53
1665 3141 4.028993 TGGAACCAGAACTATTTCCACC 57.971 45.455 10.41 0.00 42.08 4.61
1694 3170 3.130516 CCGGACACCAGTATCGCATATAT 59.869 47.826 0.00 0.00 0.00 0.86
1695 3171 4.105486 CGGACACCAGTATCGCATATATG 58.895 47.826 8.45 8.45 0.00 1.78
1699 3181 7.255001 CGGACACCAGTATCGCATATATGTATA 60.255 40.741 14.14 9.50 0.00 1.47
1706 3188 8.630840 CAGTATCGCATATATGTATATTGCGTC 58.369 37.037 23.85 18.92 43.01 5.19
1707 3189 6.675515 ATCGCATATATGTATATTGCGTCG 57.324 37.500 23.85 5.36 43.01 5.12
1860 3345 5.006386 ACATGCAGGTTAAAGGAGAAGAAG 58.994 41.667 0.00 0.00 0.00 2.85
1884 3369 4.079253 GGGATGCAAGGAAGTTTCTTACA 58.921 43.478 0.00 0.00 0.00 2.41
2086 3572 6.949352 TCAAGAAAGTGCTTTTTCTCTCAT 57.051 33.333 13.82 0.16 44.43 2.90
2121 3607 3.195610 TCATGACTAGTTGCATCTCCGTT 59.804 43.478 0.00 0.00 0.00 4.44
2160 3655 9.495572 CCCTTTTGGTATTATTTGTTGCTTTTA 57.504 29.630 0.00 0.00 38.10 1.52
2308 3803 8.535335 AGCTTGATAGAGTGATTTAGTGAAAGA 58.465 33.333 0.00 0.00 0.00 2.52
2371 3902 7.081857 TGAGGTGGTTAACTACTTTTATGGT 57.918 36.000 19.90 0.00 0.00 3.55
2378 3909 9.411189 TGGTTAACTACTTTTATGGTCAACTTT 57.589 29.630 5.42 0.00 0.00 2.66
2424 3991 4.910195 TGTGCACATCTTCATCCTAAAGT 58.090 39.130 17.42 0.00 0.00 2.66
2425 3992 4.696877 TGTGCACATCTTCATCCTAAAGTG 59.303 41.667 17.42 0.00 0.00 3.16
2430 3997 6.238593 GCACATCTTCATCCTAAAGTGATTCC 60.239 42.308 0.00 0.00 0.00 3.01
2431 3998 6.825213 CACATCTTCATCCTAAAGTGATTCCA 59.175 38.462 0.00 0.00 0.00 3.53
2523 4096 2.246719 GTGAGTTCACAAGCTGGTCT 57.753 50.000 7.37 0.00 45.75 3.85
2531 4104 4.948341 TCACAAGCTGGTCTGTAACTTA 57.052 40.909 0.00 0.00 0.00 2.24
2588 4161 4.112634 TGTGCTCTAACATAATCGTCTGC 58.887 43.478 0.00 0.00 0.00 4.26
2596 4169 7.324935 TCTAACATAATCGTCTGCCAGTTTAA 58.675 34.615 0.00 0.00 0.00 1.52
2600 4173 6.430000 ACATAATCGTCTGCCAGTTTAACTTT 59.570 34.615 0.00 0.00 0.00 2.66
2603 4176 5.856126 TCGTCTGCCAGTTTAACTTTATG 57.144 39.130 0.00 0.00 0.00 1.90
2604 4177 5.302360 TCGTCTGCCAGTTTAACTTTATGT 58.698 37.500 0.00 0.00 0.00 2.29
2683 4257 9.107177 CATATTCACATAAGCTCTTTTCTCAGT 57.893 33.333 0.00 0.00 0.00 3.41
2789 4363 1.734117 GCTCATGGTTTTGCACGCC 60.734 57.895 0.00 0.00 0.00 5.68
2821 4395 6.992063 ACATCAGTGATTTTTGCCTACTAG 57.008 37.500 1.86 0.00 0.00 2.57
2822 4396 5.355350 ACATCAGTGATTTTTGCCTACTAGC 59.645 40.000 1.86 0.00 0.00 3.42
2869 4457 8.519526 TGTTTCATATTTTCACCTACCATGTTC 58.480 33.333 0.00 0.00 0.00 3.18
3029 4617 2.093973 ACAGTCCATTTCAGGTAGCTCG 60.094 50.000 0.00 0.00 0.00 5.03
3053 4835 8.349245 TCGATTCATATTTCACGCCAATTTAAT 58.651 29.630 0.00 0.00 0.00 1.40
3085 4867 3.146066 TGCCATTCAGACTTGTTACACC 58.854 45.455 0.00 0.00 0.00 4.16
3128 4910 3.125316 GGTGTACGTTTGTGCTGACTTA 58.875 45.455 0.00 0.00 0.00 2.24
3159 4943 2.650778 CAGGTTTTTGCCGGAGCC 59.349 61.111 5.05 0.00 38.69 4.70
3175 4959 1.880027 GAGCCCTTGTTGGTTGTACAG 59.120 52.381 0.00 0.00 0.00 2.74
3195 4979 5.937111 ACAGTAGCGTATTTAATGGGGAAT 58.063 37.500 0.00 0.00 0.00 3.01
3200 4984 6.635030 AGCGTATTTAATGGGGAATTCTTC 57.365 37.500 5.23 0.00 0.00 2.87
3254 5039 8.534954 TGCCTTATACTCAGATTACACTACTT 57.465 34.615 0.00 0.00 0.00 2.24
3333 5118 1.956477 CCCTTCTGTTGAACTGGTTGG 59.044 52.381 2.37 3.09 0.00 3.77
3378 5163 3.904136 GCATATTTTGCGCTGGTAGAT 57.096 42.857 9.73 0.00 42.54 1.98
3416 5201 0.034756 TTACGACACCATGCAGCTGT 59.965 50.000 16.64 0.00 0.00 4.40
3493 5278 3.798511 GGCTAAGCCCCTCGCCTT 61.799 66.667 0.00 0.00 44.06 4.35
3494 5279 2.514824 GCTAAGCCCCTCGCCTTG 60.515 66.667 0.00 0.00 38.78 3.61
3495 5280 2.990479 CTAAGCCCCTCGCCTTGT 59.010 61.111 0.00 0.00 38.78 3.16
3496 5281 1.299976 CTAAGCCCCTCGCCTTGTT 59.700 57.895 0.00 0.00 38.78 2.83
3534 5319 0.107654 CATCCCCGGTGAACTTCTCC 60.108 60.000 0.00 0.38 0.00 3.71
3615 5400 0.381801 CTGTTGTGTGTGCCCTTCAC 59.618 55.000 0.00 0.00 45.82 3.18
3621 5406 2.158682 TGTGTGTGCCCTTCACTTACAT 60.159 45.455 0.00 0.00 45.81 2.29
3636 5421 5.938125 TCACTTACATTTCTCTTTGGGCTAC 59.062 40.000 0.00 0.00 0.00 3.58
3694 5479 8.515414 CCACATTCTCTACGATCATATCACTTA 58.485 37.037 0.00 0.00 0.00 2.24
3795 5580 7.442062 CCTCAGCATTGTTAAGGTTTTTGATTT 59.558 33.333 0.00 0.00 0.00 2.17
3833 5619 9.480053 CTCATGTAAACTGAATCAATGGTTTTT 57.520 29.630 4.77 0.00 34.40 1.94
3859 5645 8.514594 TGATTCAAAACAGACTGATGTATTTCC 58.485 33.333 10.08 0.00 31.70 3.13
3860 5646 7.815840 TTCAAAACAGACTGATGTATTTCCA 57.184 32.000 10.08 0.00 31.70 3.53
3883 5669 7.603404 TCCATTGATTGCAAAATTAGTGGAAAG 59.397 33.333 1.71 0.00 34.47 2.62
3951 5740 7.497909 TCTTACATAAACCGGATCATTCTTTCC 59.502 37.037 9.46 0.00 0.00 3.13
3995 5786 2.691252 ATTCCTCCCCCGGTGACC 60.691 66.667 0.00 0.00 0.00 4.02
4129 5949 7.123247 GCATCTTTTATCTGCCATTATACCCAT 59.877 37.037 0.00 0.00 0.00 4.00
4130 5950 9.685276 CATCTTTTATCTGCCATTATACCCATA 57.315 33.333 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.907897 ATTGCTACCCGACGCTGCTC 62.908 60.000 0.00 0.00 0.00 4.26
4 5 3.019003 ATTGCTACCCGACGCTGCT 62.019 57.895 0.00 0.00 0.00 4.24
5 6 2.511600 ATTGCTACCCGACGCTGC 60.512 61.111 0.00 0.00 0.00 5.25
6 7 2.813179 GCATTGCTACCCGACGCTG 61.813 63.158 0.16 0.00 0.00 5.18
7 8 2.511600 GCATTGCTACCCGACGCT 60.512 61.111 0.16 0.00 0.00 5.07
8 9 2.180204 ATGCATTGCTACCCGACGC 61.180 57.895 10.49 0.00 0.00 5.19
9 10 1.089481 ACATGCATTGCTACCCGACG 61.089 55.000 10.49 0.00 0.00 5.12
10 11 0.378257 CACATGCATTGCTACCCGAC 59.622 55.000 10.49 0.00 0.00 4.79
11 12 1.375853 GCACATGCATTGCTACCCGA 61.376 55.000 19.93 0.00 41.59 5.14
12 13 1.064621 GCACATGCATTGCTACCCG 59.935 57.895 19.93 1.62 41.59 5.28
23 24 2.428925 CCCATCCCCTTGCACATGC 61.429 63.158 0.00 0.00 42.50 4.06
24 25 1.759299 CCCCATCCCCTTGCACATG 60.759 63.158 0.00 0.00 0.00 3.21
25 26 2.691732 CCCCATCCCCTTGCACAT 59.308 61.111 0.00 0.00 0.00 3.21
26 27 3.671410 CCCCCATCCCCTTGCACA 61.671 66.667 0.00 0.00 0.00 4.57
56 57 0.979665 CTCTCCACACAGTCATGGGT 59.020 55.000 0.00 0.00 46.78 4.51
57 58 1.269958 TCTCTCCACACAGTCATGGG 58.730 55.000 0.00 0.00 36.56 4.00
58 59 2.498885 TGATCTCTCCACACAGTCATGG 59.501 50.000 0.00 0.00 37.32 3.66
59 60 3.881937 TGATCTCTCCACACAGTCATG 57.118 47.619 0.00 0.00 0.00 3.07
60 61 4.028825 TGATGATCTCTCCACACAGTCAT 58.971 43.478 0.00 0.00 0.00 3.06
61 62 3.434309 TGATGATCTCTCCACACAGTCA 58.566 45.455 0.00 0.00 0.00 3.41
62 63 3.181477 CCTGATGATCTCTCCACACAGTC 60.181 52.174 0.00 0.00 0.00 3.51
63 64 2.765135 CCTGATGATCTCTCCACACAGT 59.235 50.000 0.00 0.00 0.00 3.55
64 65 2.483363 GCCTGATGATCTCTCCACACAG 60.483 54.545 0.00 0.00 0.00 3.66
65 66 1.483827 GCCTGATGATCTCTCCACACA 59.516 52.381 0.00 0.00 0.00 3.72
66 67 1.483827 TGCCTGATGATCTCTCCACAC 59.516 52.381 0.00 0.00 0.00 3.82
67 68 1.483827 GTGCCTGATGATCTCTCCACA 59.516 52.381 0.00 0.00 0.00 4.17
68 69 1.483827 TGTGCCTGATGATCTCTCCAC 59.516 52.381 0.00 0.00 0.00 4.02
69 70 1.870064 TGTGCCTGATGATCTCTCCA 58.130 50.000 0.00 0.00 0.00 3.86
70 71 2.093288 TGTTGTGCCTGATGATCTCTCC 60.093 50.000 0.00 0.00 0.00 3.71
71 72 2.935201 GTGTTGTGCCTGATGATCTCTC 59.065 50.000 0.00 0.00 0.00 3.20
72 73 2.303890 TGTGTTGTGCCTGATGATCTCT 59.696 45.455 0.00 0.00 0.00 3.10
73 74 2.417933 GTGTGTTGTGCCTGATGATCTC 59.582 50.000 0.00 0.00 0.00 2.75
74 75 2.224597 TGTGTGTTGTGCCTGATGATCT 60.225 45.455 0.00 0.00 0.00 2.75
75 76 2.153645 TGTGTGTTGTGCCTGATGATC 58.846 47.619 0.00 0.00 0.00 2.92
76 77 2.156917 CTGTGTGTTGTGCCTGATGAT 58.843 47.619 0.00 0.00 0.00 2.45
77 78 1.596603 CTGTGTGTTGTGCCTGATGA 58.403 50.000 0.00 0.00 0.00 2.92
78 79 0.594602 CCTGTGTGTTGTGCCTGATG 59.405 55.000 0.00 0.00 0.00 3.07
79 80 0.538057 CCCTGTGTGTTGTGCCTGAT 60.538 55.000 0.00 0.00 0.00 2.90
80 81 1.152984 CCCTGTGTGTTGTGCCTGA 60.153 57.895 0.00 0.00 0.00 3.86
81 82 1.453745 ACCCTGTGTGTTGTGCCTG 60.454 57.895 0.00 0.00 0.00 4.85
82 83 1.453745 CACCCTGTGTGTTGTGCCT 60.454 57.895 0.00 0.00 40.26 4.75
83 84 2.489275 CCACCCTGTGTGTTGTGCC 61.489 63.158 0.00 0.00 43.85 5.01
84 85 2.489275 CCCACCCTGTGTGTTGTGC 61.489 63.158 0.00 0.00 43.85 4.57
85 86 1.827789 CCCCACCCTGTGTGTTGTG 60.828 63.158 0.00 0.00 43.85 3.33
86 87 2.313427 ACCCCACCCTGTGTGTTGT 61.313 57.895 0.00 0.00 43.85 3.32
87 88 1.827789 CACCCCACCCTGTGTGTTG 60.828 63.158 0.00 0.00 43.85 3.33
88 89 2.600731 CACCCCACCCTGTGTGTT 59.399 61.111 0.00 0.00 43.85 3.32
89 90 3.498071 CCACCCCACCCTGTGTGT 61.498 66.667 0.00 0.00 43.85 3.72
90 91 4.284550 CCCACCCCACCCTGTGTG 62.285 72.222 0.00 0.00 45.01 3.82
106 107 0.755698 TCTCTCACGCTCATACCCCC 60.756 60.000 0.00 0.00 0.00 5.40
107 108 0.671251 CTCTCTCACGCTCATACCCC 59.329 60.000 0.00 0.00 0.00 4.95
108 109 0.031449 GCTCTCTCACGCTCATACCC 59.969 60.000 0.00 0.00 0.00 3.69
109 110 1.028905 AGCTCTCTCACGCTCATACC 58.971 55.000 0.00 0.00 0.00 2.73
110 111 2.350388 GCTAGCTCTCTCACGCTCATAC 60.350 54.545 7.70 0.00 37.68 2.39
111 112 1.876799 GCTAGCTCTCTCACGCTCATA 59.123 52.381 7.70 0.00 37.68 2.15
112 113 0.667993 GCTAGCTCTCTCACGCTCAT 59.332 55.000 7.70 0.00 37.68 2.90
113 114 1.710103 CGCTAGCTCTCTCACGCTCA 61.710 60.000 13.93 0.00 37.68 4.26
114 115 1.010125 CGCTAGCTCTCTCACGCTC 60.010 63.158 13.93 0.00 37.68 5.03
115 116 0.817634 ATCGCTAGCTCTCTCACGCT 60.818 55.000 13.93 0.00 40.15 5.07
116 117 0.869068 TATCGCTAGCTCTCTCACGC 59.131 55.000 13.93 0.00 0.00 5.34
117 118 3.550561 CTTTATCGCTAGCTCTCTCACG 58.449 50.000 13.93 0.00 0.00 4.35
118 119 3.305064 CCCTTTATCGCTAGCTCTCTCAC 60.305 52.174 13.93 0.00 0.00 3.51
119 120 2.887783 CCCTTTATCGCTAGCTCTCTCA 59.112 50.000 13.93 0.00 0.00 3.27
120 121 3.150767 TCCCTTTATCGCTAGCTCTCTC 58.849 50.000 13.93 0.00 0.00 3.20
121 122 3.231207 TCCCTTTATCGCTAGCTCTCT 57.769 47.619 13.93 0.00 0.00 3.10
122 123 5.646577 TTATCCCTTTATCGCTAGCTCTC 57.353 43.478 13.93 0.00 0.00 3.20
123 124 5.105146 CCATTATCCCTTTATCGCTAGCTCT 60.105 44.000 13.93 1.96 0.00 4.09
124 125 5.105310 TCCATTATCCCTTTATCGCTAGCTC 60.105 44.000 13.93 0.00 0.00 4.09
125 126 4.777896 TCCATTATCCCTTTATCGCTAGCT 59.222 41.667 13.93 0.00 0.00 3.32
126 127 5.086104 TCCATTATCCCTTTATCGCTAGC 57.914 43.478 4.06 4.06 0.00 3.42
127 128 5.422331 TCCTCCATTATCCCTTTATCGCTAG 59.578 44.000 0.00 0.00 0.00 3.42
128 129 5.338632 TCCTCCATTATCCCTTTATCGCTA 58.661 41.667 0.00 0.00 0.00 4.26
129 130 4.168101 TCCTCCATTATCCCTTTATCGCT 58.832 43.478 0.00 0.00 0.00 4.93
130 131 4.508662 CTCCTCCATTATCCCTTTATCGC 58.491 47.826 0.00 0.00 0.00 4.58
131 132 4.777896 TCCTCCTCCATTATCCCTTTATCG 59.222 45.833 0.00 0.00 0.00 2.92
132 133 6.273495 ACTTCCTCCTCCATTATCCCTTTATC 59.727 42.308 0.00 0.00 0.00 1.75
133 134 6.161167 ACTTCCTCCTCCATTATCCCTTTAT 58.839 40.000 0.00 0.00 0.00 1.40
134 135 5.548573 ACTTCCTCCTCCATTATCCCTTTA 58.451 41.667 0.00 0.00 0.00 1.85
135 136 4.384465 ACTTCCTCCTCCATTATCCCTTT 58.616 43.478 0.00 0.00 0.00 3.11
136 137 4.027782 ACTTCCTCCTCCATTATCCCTT 57.972 45.455 0.00 0.00 0.00 3.95
137 138 3.734344 ACTTCCTCCTCCATTATCCCT 57.266 47.619 0.00 0.00 0.00 4.20
138 139 6.408662 GCATATACTTCCTCCTCCATTATCCC 60.409 46.154 0.00 0.00 0.00 3.85
139 140 6.587273 GCATATACTTCCTCCTCCATTATCC 58.413 44.000 0.00 0.00 0.00 2.59
140 141 6.276847 CGCATATACTTCCTCCTCCATTATC 58.723 44.000 0.00 0.00 0.00 1.75
141 142 5.129485 CCGCATATACTTCCTCCTCCATTAT 59.871 44.000 0.00 0.00 0.00 1.28
142 143 4.466370 CCGCATATACTTCCTCCTCCATTA 59.534 45.833 0.00 0.00 0.00 1.90
143 144 3.261897 CCGCATATACTTCCTCCTCCATT 59.738 47.826 0.00 0.00 0.00 3.16
144 145 2.834549 CCGCATATACTTCCTCCTCCAT 59.165 50.000 0.00 0.00 0.00 3.41
145 146 2.158370 TCCGCATATACTTCCTCCTCCA 60.158 50.000 0.00 0.00 0.00 3.86
146 147 2.231721 GTCCGCATATACTTCCTCCTCC 59.768 54.545 0.00 0.00 0.00 4.30
147 148 2.891580 TGTCCGCATATACTTCCTCCTC 59.108 50.000 0.00 0.00 0.00 3.71
148 149 2.958818 TGTCCGCATATACTTCCTCCT 58.041 47.619 0.00 0.00 0.00 3.69
149 150 3.746045 TTGTCCGCATATACTTCCTCC 57.254 47.619 0.00 0.00 0.00 4.30
150 151 6.026947 ACTATTGTCCGCATATACTTCCTC 57.973 41.667 0.00 0.00 0.00 3.71
151 152 6.420913 AACTATTGTCCGCATATACTTCCT 57.579 37.500 0.00 0.00 0.00 3.36
152 153 6.704493 TGAAACTATTGTCCGCATATACTTCC 59.296 38.462 0.00 0.00 0.00 3.46
153 154 7.709269 TGAAACTATTGTCCGCATATACTTC 57.291 36.000 0.00 0.00 0.00 3.01
154 155 7.254319 CGTTGAAACTATTGTCCGCATATACTT 60.254 37.037 0.00 0.00 0.00 2.24
155 156 6.200286 CGTTGAAACTATTGTCCGCATATACT 59.800 38.462 0.00 0.00 0.00 2.12
156 157 6.352526 CGTTGAAACTATTGTCCGCATATAC 58.647 40.000 0.00 0.00 0.00 1.47
157 158 5.464057 CCGTTGAAACTATTGTCCGCATATA 59.536 40.000 0.00 0.00 0.00 0.86
158 159 4.272504 CCGTTGAAACTATTGTCCGCATAT 59.727 41.667 0.00 0.00 0.00 1.78
159 160 3.619483 CCGTTGAAACTATTGTCCGCATA 59.381 43.478 0.00 0.00 0.00 3.14
160 161 2.418628 CCGTTGAAACTATTGTCCGCAT 59.581 45.455 0.00 0.00 0.00 4.73
161 162 1.801771 CCGTTGAAACTATTGTCCGCA 59.198 47.619 0.00 0.00 0.00 5.69
162 163 2.070783 TCCGTTGAAACTATTGTCCGC 58.929 47.619 0.00 0.00 0.00 5.54
163 164 4.735662 TTTCCGTTGAAACTATTGTCCG 57.264 40.909 0.00 0.00 35.58 4.79
164 165 7.813645 ACTTATTTCCGTTGAAACTATTGTCC 58.186 34.615 0.00 0.00 42.97 4.02
165 166 8.500773 TGACTTATTTCCGTTGAAACTATTGTC 58.499 33.333 0.00 0.00 42.97 3.18
166 167 8.385898 TGACTTATTTCCGTTGAAACTATTGT 57.614 30.769 0.00 0.00 42.97 2.71
167 168 9.329913 CTTGACTTATTTCCGTTGAAACTATTG 57.670 33.333 0.00 0.00 42.97 1.90
168 169 9.280174 TCTTGACTTATTTCCGTTGAAACTATT 57.720 29.630 0.00 0.00 42.97 1.73
169 170 8.842358 TCTTGACTTATTTCCGTTGAAACTAT 57.158 30.769 0.00 0.00 42.97 2.12
170 171 8.145767 TCTCTTGACTTATTTCCGTTGAAACTA 58.854 33.333 0.00 0.00 42.97 2.24
171 172 6.990349 TCTCTTGACTTATTTCCGTTGAAACT 59.010 34.615 0.00 0.00 42.97 2.66
172 173 7.186021 TCTCTTGACTTATTTCCGTTGAAAC 57.814 36.000 0.00 0.00 42.97 2.78
173 174 7.713507 TCTTCTCTTGACTTATTTCCGTTGAAA 59.286 33.333 0.00 0.00 44.22 2.69
174 175 7.214381 TCTTCTCTTGACTTATTTCCGTTGAA 58.786 34.615 0.00 0.00 0.00 2.69
175 176 6.755206 TCTTCTCTTGACTTATTTCCGTTGA 58.245 36.000 0.00 0.00 0.00 3.18
176 177 7.602517 ATCTTCTCTTGACTTATTTCCGTTG 57.397 36.000 0.00 0.00 0.00 4.10
177 178 7.878127 TCAATCTTCTCTTGACTTATTTCCGTT 59.122 33.333 0.00 0.00 0.00 4.44
178 179 7.386851 TCAATCTTCTCTTGACTTATTTCCGT 58.613 34.615 0.00 0.00 0.00 4.69
179 180 7.834068 TCAATCTTCTCTTGACTTATTTCCG 57.166 36.000 0.00 0.00 0.00 4.30
183 184 9.018582 CCCTTTTCAATCTTCTCTTGACTTATT 57.981 33.333 0.00 0.00 32.57 1.40
184 185 8.166726 ACCCTTTTCAATCTTCTCTTGACTTAT 58.833 33.333 0.00 0.00 32.57 1.73
185 186 7.445402 CACCCTTTTCAATCTTCTCTTGACTTA 59.555 37.037 0.00 0.00 32.57 2.24
186 187 6.264067 CACCCTTTTCAATCTTCTCTTGACTT 59.736 38.462 0.00 0.00 32.57 3.01
187 188 5.767168 CACCCTTTTCAATCTTCTCTTGACT 59.233 40.000 0.00 0.00 32.57 3.41
188 189 5.563671 GCACCCTTTTCAATCTTCTCTTGAC 60.564 44.000 0.00 0.00 32.57 3.18
189 190 4.520492 GCACCCTTTTCAATCTTCTCTTGA 59.480 41.667 0.00 0.00 0.00 3.02
190 191 4.279169 TGCACCCTTTTCAATCTTCTCTTG 59.721 41.667 0.00 0.00 0.00 3.02
191 192 4.279420 GTGCACCCTTTTCAATCTTCTCTT 59.721 41.667 5.22 0.00 0.00 2.85
192 193 3.823304 GTGCACCCTTTTCAATCTTCTCT 59.177 43.478 5.22 0.00 0.00 3.10
193 194 3.569701 TGTGCACCCTTTTCAATCTTCTC 59.430 43.478 15.69 0.00 0.00 2.87
194 195 3.565307 TGTGCACCCTTTTCAATCTTCT 58.435 40.909 15.69 0.00 0.00 2.85
195 196 4.525912 ATGTGCACCCTTTTCAATCTTC 57.474 40.909 15.69 0.00 0.00 2.87
196 197 4.082026 GCTATGTGCACCCTTTTCAATCTT 60.082 41.667 15.69 0.00 42.31 2.40
197 198 3.445096 GCTATGTGCACCCTTTTCAATCT 59.555 43.478 15.69 0.00 42.31 2.40
198 199 3.731867 CGCTATGTGCACCCTTTTCAATC 60.732 47.826 15.69 0.00 43.06 2.67
199 200 2.164219 CGCTATGTGCACCCTTTTCAAT 59.836 45.455 15.69 0.45 43.06 2.57
200 201 1.539388 CGCTATGTGCACCCTTTTCAA 59.461 47.619 15.69 0.00 43.06 2.69
201 202 1.164411 CGCTATGTGCACCCTTTTCA 58.836 50.000 15.69 0.00 43.06 2.69
202 203 0.451783 CCGCTATGTGCACCCTTTTC 59.548 55.000 15.69 0.00 43.06 2.29
203 204 0.037590 TCCGCTATGTGCACCCTTTT 59.962 50.000 15.69 0.00 43.06 2.27
204 205 0.676782 GTCCGCTATGTGCACCCTTT 60.677 55.000 15.69 0.00 43.06 3.11
205 206 1.078426 GTCCGCTATGTGCACCCTT 60.078 57.895 15.69 1.55 43.06 3.95
206 207 1.990060 AGTCCGCTATGTGCACCCT 60.990 57.895 15.69 4.16 43.06 4.34
207 208 1.815421 CAGTCCGCTATGTGCACCC 60.815 63.158 15.69 0.00 43.06 4.61
208 209 0.673644 AACAGTCCGCTATGTGCACC 60.674 55.000 15.69 0.00 43.06 5.01
209 210 1.659098 GTAACAGTCCGCTATGTGCAC 59.341 52.381 10.75 10.75 43.06 4.57
210 211 1.273886 TGTAACAGTCCGCTATGTGCA 59.726 47.619 0.00 0.00 43.06 4.57
211 212 1.927174 CTGTAACAGTCCGCTATGTGC 59.073 52.381 0.00 0.00 38.57 4.57
212 213 3.179830 GTCTGTAACAGTCCGCTATGTG 58.820 50.000 0.00 0.00 32.61 3.21
213 214 2.159421 CGTCTGTAACAGTCCGCTATGT 60.159 50.000 0.00 0.00 32.61 2.29
214 215 2.159421 ACGTCTGTAACAGTCCGCTATG 60.159 50.000 0.00 0.00 33.16 2.23
215 216 2.089980 ACGTCTGTAACAGTCCGCTAT 58.910 47.619 0.00 0.00 33.16 2.97
216 217 1.198408 CACGTCTGTAACAGTCCGCTA 59.802 52.381 0.00 0.00 33.16 4.26
217 218 0.039437 CACGTCTGTAACAGTCCGCT 60.039 55.000 0.00 0.00 33.16 5.52
218 219 0.318445 ACACGTCTGTAACAGTCCGC 60.318 55.000 0.00 0.00 33.16 5.54
219 220 1.268896 ACACACGTCTGTAACAGTCCG 60.269 52.381 0.00 0.00 34.86 4.79
220 221 2.503920 ACACACGTCTGTAACAGTCC 57.496 50.000 0.00 0.00 32.61 3.85
221 222 3.251729 TCCTACACACGTCTGTAACAGTC 59.748 47.826 5.18 0.00 32.61 3.51
222 223 3.004106 GTCCTACACACGTCTGTAACAGT 59.996 47.826 5.18 0.00 32.61 3.55
223 224 3.004002 TGTCCTACACACGTCTGTAACAG 59.996 47.826 5.18 0.00 0.00 3.16
224 225 2.950975 TGTCCTACACACGTCTGTAACA 59.049 45.455 5.18 5.02 0.00 2.41
225 226 3.631145 TGTCCTACACACGTCTGTAAC 57.369 47.619 5.18 2.58 0.00 2.50
226 227 4.652421 TTTGTCCTACACACGTCTGTAA 57.348 40.909 5.18 0.00 33.41 2.41
227 228 4.859304 ATTTGTCCTACACACGTCTGTA 57.141 40.909 3.58 3.58 33.41 2.74
228 229 3.746045 ATTTGTCCTACACACGTCTGT 57.254 42.857 1.15 1.15 33.41 3.41
229 230 5.418310 AAAATTTGTCCTACACACGTCTG 57.582 39.130 0.00 0.00 33.41 3.51
230 231 7.739498 ATTAAAATTTGTCCTACACACGTCT 57.261 32.000 0.00 0.00 33.41 4.18
231 232 7.149031 GCAATTAAAATTTGTCCTACACACGTC 60.149 37.037 0.00 0.00 33.41 4.34
232 233 6.639279 GCAATTAAAATTTGTCCTACACACGT 59.361 34.615 0.00 0.00 33.41 4.49
233 234 6.638873 TGCAATTAAAATTTGTCCTACACACG 59.361 34.615 0.00 0.00 33.41 4.49
234 235 7.358023 CGTGCAATTAAAATTTGTCCTACACAC 60.358 37.037 0.00 0.00 33.41 3.82
235 236 6.638873 CGTGCAATTAAAATTTGTCCTACACA 59.361 34.615 0.00 0.00 0.00 3.72
236 237 6.858993 TCGTGCAATTAAAATTTGTCCTACAC 59.141 34.615 0.00 0.00 0.00 2.90
237 238 6.971602 TCGTGCAATTAAAATTTGTCCTACA 58.028 32.000 0.00 0.00 0.00 2.74
238 239 7.540745 ACATCGTGCAATTAAAATTTGTCCTAC 59.459 33.333 0.00 0.00 0.00 3.18
239 240 7.540400 CACATCGTGCAATTAAAATTTGTCCTA 59.460 33.333 0.00 0.00 0.00 2.94
240 241 6.365789 CACATCGTGCAATTAAAATTTGTCCT 59.634 34.615 0.00 0.00 0.00 3.85
241 242 6.364706 TCACATCGTGCAATTAAAATTTGTCC 59.635 34.615 0.00 0.00 32.98 4.02
242 243 7.332003 TCACATCGTGCAATTAAAATTTGTC 57.668 32.000 0.00 0.00 32.98 3.18
243 244 6.128849 GCTCACATCGTGCAATTAAAATTTGT 60.129 34.615 0.00 0.00 34.19 2.83
244 245 6.235642 GCTCACATCGTGCAATTAAAATTTG 58.764 36.000 0.00 0.00 34.19 2.32
245 246 5.060816 CGCTCACATCGTGCAATTAAAATTT 59.939 36.000 0.00 0.00 33.60 1.82
246 247 4.558470 CGCTCACATCGTGCAATTAAAATT 59.442 37.500 0.00 0.00 33.60 1.82
247 248 4.097714 CGCTCACATCGTGCAATTAAAAT 58.902 39.130 0.00 0.00 33.60 1.82
248 249 3.187432 TCGCTCACATCGTGCAATTAAAA 59.813 39.130 0.00 0.00 33.60 1.52
249 250 2.739379 TCGCTCACATCGTGCAATTAAA 59.261 40.909 0.00 0.00 33.60 1.52
250 251 2.342179 TCGCTCACATCGTGCAATTAA 58.658 42.857 0.00 0.00 33.60 1.40
251 252 2.003196 TCGCTCACATCGTGCAATTA 57.997 45.000 0.00 0.00 33.60 1.40
252 253 1.063027 CATCGCTCACATCGTGCAATT 59.937 47.619 0.00 0.00 33.60 2.32
253 254 0.654160 CATCGCTCACATCGTGCAAT 59.346 50.000 0.00 0.00 33.60 3.56
254 255 1.969809 GCATCGCTCACATCGTGCAA 61.970 55.000 0.00 0.00 35.59 4.08
255 256 2.455291 GCATCGCTCACATCGTGCA 61.455 57.895 0.00 0.00 35.59 4.57
256 257 2.322422 GCATCGCTCACATCGTGC 59.678 61.111 0.00 0.00 32.98 5.34
257 258 1.346197 GTGCATCGCTCACATCGTG 59.654 57.895 0.00 0.00 34.73 4.35
258 259 1.079888 TGTGCATCGCTCACATCGT 60.080 52.632 0.00 0.00 39.29 3.73
259 260 3.784746 TGTGCATCGCTCACATCG 58.215 55.556 0.00 0.00 39.29 3.84
270 271 5.878332 TCGTATTCAAAAGATGTGTGCAT 57.122 34.783 0.00 0.00 38.18 3.96
271 272 5.681337 TTCGTATTCAAAAGATGTGTGCA 57.319 34.783 0.00 0.00 0.00 4.57
272 273 6.546395 AGATTCGTATTCAAAAGATGTGTGC 58.454 36.000 0.00 0.00 0.00 4.57
275 276 9.655769 CCATTAGATTCGTATTCAAAAGATGTG 57.344 33.333 0.00 0.00 0.00 3.21
276 277 9.396022 ACCATTAGATTCGTATTCAAAAGATGT 57.604 29.630 0.00 0.00 0.00 3.06
307 308 9.936759 TGAACAAAGTATGAGTTATATGACACA 57.063 29.630 0.45 0.45 0.00 3.72
309 310 9.378551 GGTGAACAAAGTATGAGTTATATGACA 57.621 33.333 0.00 0.00 0.00 3.58
310 311 8.827677 GGGTGAACAAAGTATGAGTTATATGAC 58.172 37.037 0.00 0.00 0.00 3.06
311 312 8.544622 TGGGTGAACAAAGTATGAGTTATATGA 58.455 33.333 0.00 0.00 0.00 2.15
312 313 8.731275 TGGGTGAACAAAGTATGAGTTATATG 57.269 34.615 0.00 0.00 0.00 1.78
313 314 9.747898 TTTGGGTGAACAAAGTATGAGTTATAT 57.252 29.630 0.00 0.00 35.57 0.86
314 315 9.747898 ATTTGGGTGAACAAAGTATGAGTTATA 57.252 29.630 0.00 0.00 42.91 0.98
315 316 8.650143 ATTTGGGTGAACAAAGTATGAGTTAT 57.350 30.769 0.00 0.00 42.91 1.89
316 317 8.472007 AATTTGGGTGAACAAAGTATGAGTTA 57.528 30.769 0.00 0.00 42.91 2.24
317 318 6.976934 ATTTGGGTGAACAAAGTATGAGTT 57.023 33.333 0.00 0.00 42.91 3.01
318 319 6.976934 AATTTGGGTGAACAAAGTATGAGT 57.023 33.333 0.00 0.00 42.91 3.41
319 320 7.393234 TCCTAATTTGGGTGAACAAAGTATGAG 59.607 37.037 6.08 0.00 42.91 2.90
320 321 7.235079 TCCTAATTTGGGTGAACAAAGTATGA 58.765 34.615 6.08 0.00 42.91 2.15
321 322 7.461182 TCCTAATTTGGGTGAACAAAGTATG 57.539 36.000 6.08 0.00 42.91 2.39
322 323 8.664669 AATCCTAATTTGGGTGAACAAAGTAT 57.335 30.769 6.08 0.00 42.91 2.12
323 324 9.238368 CTAATCCTAATTTGGGTGAACAAAGTA 57.762 33.333 6.08 0.00 42.91 2.24
324 325 6.994421 AATCCTAATTTGGGTGAACAAAGT 57.006 33.333 6.08 0.00 42.91 2.66
325 326 8.348285 TCTAATCCTAATTTGGGTGAACAAAG 57.652 34.615 6.08 0.00 42.91 2.77
326 327 8.713708 TTCTAATCCTAATTTGGGTGAACAAA 57.286 30.769 6.08 0.00 43.69 2.83
327 328 8.893563 ATTCTAATCCTAATTTGGGTGAACAA 57.106 30.769 6.08 0.00 0.00 2.83
328 329 8.893563 AATTCTAATCCTAATTTGGGTGAACA 57.106 30.769 6.08 0.00 0.00 3.18
329 330 8.129211 CGAATTCTAATCCTAATTTGGGTGAAC 58.871 37.037 6.08 0.00 0.00 3.18
330 331 8.050325 TCGAATTCTAATCCTAATTTGGGTGAA 58.950 33.333 6.08 0.75 30.53 3.18
331 332 7.570132 TCGAATTCTAATCCTAATTTGGGTGA 58.430 34.615 6.08 0.00 30.53 4.02
332 333 7.041098 CCTCGAATTCTAATCCTAATTTGGGTG 60.041 40.741 6.08 0.00 28.60 4.61
333 334 6.998673 CCTCGAATTCTAATCCTAATTTGGGT 59.001 38.462 6.08 0.00 28.60 4.51
334 335 6.431234 CCCTCGAATTCTAATCCTAATTTGGG 59.569 42.308 6.08 0.00 30.53 4.12
335 336 6.431234 CCCCTCGAATTCTAATCCTAATTTGG 59.569 42.308 3.52 0.00 30.53 3.28
336 337 6.072452 GCCCCTCGAATTCTAATCCTAATTTG 60.072 42.308 3.52 0.00 0.00 2.32
337 338 6.004574 GCCCCTCGAATTCTAATCCTAATTT 58.995 40.000 3.52 0.00 0.00 1.82
338 339 5.073144 TGCCCCTCGAATTCTAATCCTAATT 59.927 40.000 3.52 0.00 0.00 1.40
339 340 4.597507 TGCCCCTCGAATTCTAATCCTAAT 59.402 41.667 3.52 0.00 0.00 1.73
340 341 3.971305 TGCCCCTCGAATTCTAATCCTAA 59.029 43.478 3.52 0.00 0.00 2.69
341 342 3.583228 TGCCCCTCGAATTCTAATCCTA 58.417 45.455 3.52 0.00 0.00 2.94
342 343 2.408565 TGCCCCTCGAATTCTAATCCT 58.591 47.619 3.52 0.00 0.00 3.24
343 344 2.930826 TGCCCCTCGAATTCTAATCC 57.069 50.000 3.52 0.00 0.00 3.01
344 345 5.305585 TGTAATGCCCCTCGAATTCTAATC 58.694 41.667 3.52 0.00 0.00 1.75
345 346 5.304686 TGTAATGCCCCTCGAATTCTAAT 57.695 39.130 3.52 0.00 0.00 1.73
346 347 4.764050 TGTAATGCCCCTCGAATTCTAA 57.236 40.909 3.52 0.00 0.00 2.10
347 348 4.974645 ATGTAATGCCCCTCGAATTCTA 57.025 40.909 3.52 0.00 0.00 2.10
348 349 3.864789 ATGTAATGCCCCTCGAATTCT 57.135 42.857 3.52 0.00 0.00 2.40
349 350 4.918810 AAATGTAATGCCCCTCGAATTC 57.081 40.909 0.00 0.00 0.00 2.17
350 351 5.301805 CCTAAAATGTAATGCCCCTCGAATT 59.698 40.000 0.00 0.00 0.00 2.17
351 352 4.827284 CCTAAAATGTAATGCCCCTCGAAT 59.173 41.667 0.00 0.00 0.00 3.34
352 353 4.080243 TCCTAAAATGTAATGCCCCTCGAA 60.080 41.667 0.00 0.00 0.00 3.71
353 354 3.456644 TCCTAAAATGTAATGCCCCTCGA 59.543 43.478 0.00 0.00 0.00 4.04
354 355 3.815809 TCCTAAAATGTAATGCCCCTCG 58.184 45.455 0.00 0.00 0.00 4.63
355 356 4.584743 CCTTCCTAAAATGTAATGCCCCTC 59.415 45.833 0.00 0.00 0.00 4.30
356 357 4.231890 TCCTTCCTAAAATGTAATGCCCCT 59.768 41.667 0.00 0.00 0.00 4.79
357 358 4.542697 TCCTTCCTAAAATGTAATGCCCC 58.457 43.478 0.00 0.00 0.00 5.80
358 359 5.656859 ACTTCCTTCCTAAAATGTAATGCCC 59.343 40.000 0.00 0.00 0.00 5.36
359 360 6.775594 ACTTCCTTCCTAAAATGTAATGCC 57.224 37.500 0.00 0.00 0.00 4.40
360 361 7.279313 TCGTACTTCCTTCCTAAAATGTAATGC 59.721 37.037 0.00 0.00 0.00 3.56
361 362 8.712285 TCGTACTTCCTTCCTAAAATGTAATG 57.288 34.615 0.00 0.00 0.00 1.90
362 363 9.326413 CATCGTACTTCCTTCCTAAAATGTAAT 57.674 33.333 0.00 0.00 0.00 1.89
363 364 8.316214 ACATCGTACTTCCTTCCTAAAATGTAA 58.684 33.333 0.00 0.00 0.00 2.41
364 365 7.762615 CACATCGTACTTCCTTCCTAAAATGTA 59.237 37.037 0.00 0.00 0.00 2.29
365 366 6.594159 CACATCGTACTTCCTTCCTAAAATGT 59.406 38.462 0.00 0.00 0.00 2.71
366 367 6.594159 ACACATCGTACTTCCTTCCTAAAATG 59.406 38.462 0.00 0.00 0.00 2.32
367 368 6.708285 ACACATCGTACTTCCTTCCTAAAAT 58.292 36.000 0.00 0.00 0.00 1.82
368 369 6.105397 ACACATCGTACTTCCTTCCTAAAA 57.895 37.500 0.00 0.00 0.00 1.52
369 370 5.733620 ACACATCGTACTTCCTTCCTAAA 57.266 39.130 0.00 0.00 0.00 1.85
370 371 6.350445 GGTTACACATCGTACTTCCTTCCTAA 60.350 42.308 0.00 0.00 0.00 2.69
371 372 5.126061 GGTTACACATCGTACTTCCTTCCTA 59.874 44.000 0.00 0.00 0.00 2.94
372 373 4.081807 GGTTACACATCGTACTTCCTTCCT 60.082 45.833 0.00 0.00 0.00 3.36
373 374 4.179298 GGTTACACATCGTACTTCCTTCC 58.821 47.826 0.00 0.00 0.00 3.46
374 375 3.855950 CGGTTACACATCGTACTTCCTTC 59.144 47.826 0.00 0.00 0.00 3.46
375 376 3.367703 CCGGTTACACATCGTACTTCCTT 60.368 47.826 0.00 0.00 0.00 3.36
376 377 2.165030 CCGGTTACACATCGTACTTCCT 59.835 50.000 0.00 0.00 0.00 3.36
377 378 2.164219 TCCGGTTACACATCGTACTTCC 59.836 50.000 0.00 0.00 0.00 3.46
378 379 3.492421 TCCGGTTACACATCGTACTTC 57.508 47.619 0.00 0.00 0.00 3.01
379 380 4.202050 GGTATCCGGTTACACATCGTACTT 60.202 45.833 21.31 0.00 0.00 2.24
380 381 3.316308 GGTATCCGGTTACACATCGTACT 59.684 47.826 21.31 0.00 0.00 2.73
381 382 3.066621 TGGTATCCGGTTACACATCGTAC 59.933 47.826 21.31 5.07 0.00 3.67
382 383 3.286353 TGGTATCCGGTTACACATCGTA 58.714 45.455 21.31 0.00 0.00 3.43
383 384 2.101783 TGGTATCCGGTTACACATCGT 58.898 47.619 21.31 0.00 0.00 3.73
384 385 2.861935 GTTGGTATCCGGTTACACATCG 59.138 50.000 21.31 0.00 0.00 3.84
385 386 3.200483 GGTTGGTATCCGGTTACACATC 58.800 50.000 21.31 15.06 0.00 3.06
386 387 2.572556 TGGTTGGTATCCGGTTACACAT 59.427 45.455 21.31 0.81 0.00 3.21
387 388 1.976404 TGGTTGGTATCCGGTTACACA 59.024 47.619 21.31 14.61 0.00 3.72
388 389 2.349590 GTGGTTGGTATCCGGTTACAC 58.650 52.381 21.31 12.95 0.00 2.90
389 390 1.067000 CGTGGTTGGTATCCGGTTACA 60.067 52.381 21.31 7.61 0.00 2.41
390 391 1.066929 ACGTGGTTGGTATCCGGTTAC 60.067 52.381 13.38 13.38 0.00 2.50
391 392 1.067000 CACGTGGTTGGTATCCGGTTA 60.067 52.381 7.95 0.00 0.00 2.85
392 393 0.320946 CACGTGGTTGGTATCCGGTT 60.321 55.000 7.95 0.00 0.00 4.44
393 394 1.294138 CACGTGGTTGGTATCCGGT 59.706 57.895 7.95 0.00 0.00 5.28
394 395 0.320946 AACACGTGGTTGGTATCCGG 60.321 55.000 21.57 0.00 38.60 5.14
395 396 1.461897 GAAACACGTGGTTGGTATCCG 59.538 52.381 26.19 0.00 40.35 4.18
396 397 2.774687 AGAAACACGTGGTTGGTATCC 58.225 47.619 26.19 8.05 40.35 2.59
397 398 3.370061 GCTAGAAACACGTGGTTGGTATC 59.630 47.826 26.19 9.08 40.35 2.24
398 399 3.332034 GCTAGAAACACGTGGTTGGTAT 58.668 45.455 26.19 9.28 40.35 2.73
399 400 2.548493 GGCTAGAAACACGTGGTTGGTA 60.548 50.000 26.19 13.75 40.35 3.25
400 401 1.589803 GCTAGAAACACGTGGTTGGT 58.410 50.000 26.19 13.30 40.35 3.67
401 402 0.872388 GGCTAGAAACACGTGGTTGG 59.128 55.000 26.19 14.24 40.35 3.77
402 403 1.588674 TGGCTAGAAACACGTGGTTG 58.411 50.000 26.19 10.89 40.35 3.77
403 404 2.561478 ATGGCTAGAAACACGTGGTT 57.439 45.000 20.89 20.89 42.98 3.67
404 405 3.055385 ACATATGGCTAGAAACACGTGGT 60.055 43.478 21.57 11.47 0.00 4.16
405 406 3.309682 CACATATGGCTAGAAACACGTGG 59.690 47.826 21.57 1.25 0.00 4.94
406 407 3.309682 CCACATATGGCTAGAAACACGTG 59.690 47.826 15.48 15.48 39.82 4.49
407 408 3.196901 TCCACATATGGCTAGAAACACGT 59.803 43.478 7.80 0.00 46.80 4.49
408 409 3.792401 TCCACATATGGCTAGAAACACG 58.208 45.455 7.80 0.00 46.80 4.49
409 410 6.699575 AAATCCACATATGGCTAGAAACAC 57.300 37.500 7.80 0.00 46.80 3.32
410 411 7.716799 AAAAATCCACATATGGCTAGAAACA 57.283 32.000 7.80 0.00 46.80 2.83
435 436 9.674068 TGTTATAATAGTGTAGAATGTGCCAAA 57.326 29.630 0.00 0.00 0.00 3.28
436 437 9.845740 ATGTTATAATAGTGTAGAATGTGCCAA 57.154 29.630 0.00 0.00 0.00 4.52
437 438 9.489084 GATGTTATAATAGTGTAGAATGTGCCA 57.511 33.333 0.00 0.00 0.00 4.92
438 439 9.712305 AGATGTTATAATAGTGTAGAATGTGCC 57.288 33.333 0.00 0.00 0.00 5.01
479 480 9.596308 ACTAGGGTAGGATTTGTTTAAAAATGT 57.404 29.630 0.00 0.00 29.89 2.71
482 483 9.519191 GGTACTAGGGTAGGATTTGTTTAAAAA 57.481 33.333 0.00 0.00 0.00 1.94
483 484 8.108999 GGGTACTAGGGTAGGATTTGTTTAAAA 58.891 37.037 0.00 0.00 0.00 1.52
484 485 7.462006 AGGGTACTAGGGTAGGATTTGTTTAAA 59.538 37.037 0.00 0.00 0.00 1.52
485 486 6.967652 AGGGTACTAGGGTAGGATTTGTTTAA 59.032 38.462 0.00 0.00 0.00 1.52
486 487 6.514863 AGGGTACTAGGGTAGGATTTGTTTA 58.485 40.000 0.00 0.00 0.00 2.01
487 488 5.356575 AGGGTACTAGGGTAGGATTTGTTT 58.643 41.667 0.00 0.00 0.00 2.83
488 489 4.969133 AGGGTACTAGGGTAGGATTTGTT 58.031 43.478 0.00 0.00 0.00 2.83
489 490 4.639019 AGGGTACTAGGGTAGGATTTGT 57.361 45.455 0.00 0.00 0.00 2.83
490 491 5.713807 AGTAGGGTACTAGGGTAGGATTTG 58.286 45.833 0.00 0.00 37.23 2.32
491 492 7.299036 TCATAGTAGGGTACTAGGGTAGGATTT 59.701 40.741 6.06 0.00 43.85 2.17
492 493 6.801632 TCATAGTAGGGTACTAGGGTAGGATT 59.198 42.308 6.06 0.00 43.85 3.01
493 494 6.345834 TCATAGTAGGGTACTAGGGTAGGAT 58.654 44.000 6.06 0.00 43.85 3.24
494 495 5.741656 TCATAGTAGGGTACTAGGGTAGGA 58.258 45.833 6.06 0.00 43.85 2.94
495 496 5.789575 TCTCATAGTAGGGTACTAGGGTAGG 59.210 48.000 6.06 0.00 43.85 3.18
496 497 6.576840 GCTCTCATAGTAGGGTACTAGGGTAG 60.577 50.000 6.06 5.45 43.85 3.18
497 498 5.250313 GCTCTCATAGTAGGGTACTAGGGTA 59.750 48.000 6.06 0.00 43.85 3.69
498 499 4.043184 GCTCTCATAGTAGGGTACTAGGGT 59.957 50.000 6.06 0.00 43.85 4.34
499 500 4.043059 TGCTCTCATAGTAGGGTACTAGGG 59.957 50.000 6.06 0.00 43.85 3.53
500 501 5.244189 TGCTCTCATAGTAGGGTACTAGG 57.756 47.826 0.00 0.35 43.85 3.02
501 502 6.300703 AGTTGCTCTCATAGTAGGGTACTAG 58.699 44.000 0.00 0.00 43.85 2.57
502 503 6.263412 AGTTGCTCTCATAGTAGGGTACTA 57.737 41.667 0.00 0.00 44.64 1.82
503 504 5.132043 AGTTGCTCTCATAGTAGGGTACT 57.868 43.478 0.00 0.00 42.68 2.73
504 505 8.632906 TTATAGTTGCTCTCATAGTAGGGTAC 57.367 38.462 0.00 0.00 0.00 3.34
506 507 9.824216 TTATTATAGTTGCTCTCATAGTAGGGT 57.176 33.333 0.00 0.00 0.00 4.34
546 547 9.317827 AGGTGGTAACTCTTAACTCTTATAACA 57.682 33.333 0.00 0.00 37.61 2.41
547 548 9.800433 GAGGTGGTAACTCTTAACTCTTATAAC 57.200 37.037 0.00 0.00 37.61 1.89
548 549 9.537852 TGAGGTGGTAACTCTTAACTCTTATAA 57.462 33.333 0.00 0.00 35.98 0.98
549 550 9.186837 CTGAGGTGGTAACTCTTAACTCTTATA 57.813 37.037 0.00 0.00 35.98 0.98
550 551 7.894364 TCTGAGGTGGTAACTCTTAACTCTTAT 59.106 37.037 0.00 0.00 35.98 1.73
551 552 7.236529 TCTGAGGTGGTAACTCTTAACTCTTA 58.763 38.462 0.00 0.00 35.98 2.10
552 553 6.075984 TCTGAGGTGGTAACTCTTAACTCTT 58.924 40.000 0.00 0.00 35.98 2.85
553 554 5.642165 TCTGAGGTGGTAACTCTTAACTCT 58.358 41.667 0.00 0.00 35.98 3.24
554 555 5.979288 TCTGAGGTGGTAACTCTTAACTC 57.021 43.478 0.00 0.00 35.98 3.01
555 556 6.936968 AATCTGAGGTGGTAACTCTTAACT 57.063 37.500 0.00 0.00 35.98 2.24
556 557 9.099454 CATAAATCTGAGGTGGTAACTCTTAAC 57.901 37.037 0.00 0.00 35.98 2.01
557 558 9.042450 TCATAAATCTGAGGTGGTAACTCTTAA 57.958 33.333 0.00 0.00 35.98 1.85
558 559 8.603898 TCATAAATCTGAGGTGGTAACTCTTA 57.396 34.615 0.00 0.00 35.98 2.10
559 560 7.496346 TCATAAATCTGAGGTGGTAACTCTT 57.504 36.000 0.00 0.00 35.98 2.85
560 561 7.345653 TCATCATAAATCTGAGGTGGTAACTCT 59.654 37.037 0.00 0.00 35.98 3.24
561 562 7.500992 TCATCATAAATCTGAGGTGGTAACTC 58.499 38.462 0.00 0.00 35.55 3.01
562 563 7.437713 TCATCATAAATCTGAGGTGGTAACT 57.562 36.000 0.00 0.00 37.61 2.24
563 564 7.721286 CTCATCATAAATCTGAGGTGGTAAC 57.279 40.000 0.00 0.00 34.17 2.50
571 572 5.306419 TCCTCCACCTCATCATAAATCTGAG 59.694 44.000 0.00 0.00 36.89 3.35
572 573 5.218959 TCCTCCACCTCATCATAAATCTGA 58.781 41.667 0.00 0.00 0.00 3.27
573 574 5.557576 TCCTCCACCTCATCATAAATCTG 57.442 43.478 0.00 0.00 0.00 2.90
574 575 6.581388 TTTCCTCCACCTCATCATAAATCT 57.419 37.500 0.00 0.00 0.00 2.40
575 576 7.609532 CCTATTTCCTCCACCTCATCATAAATC 59.390 40.741 0.00 0.00 0.00 2.17
576 577 7.465116 CCTATTTCCTCCACCTCATCATAAAT 58.535 38.462 0.00 0.00 0.00 1.40
577 578 6.691491 GCCTATTTCCTCCACCTCATCATAAA 60.691 42.308 0.00 0.00 0.00 1.40
578 579 5.221925 GCCTATTTCCTCCACCTCATCATAA 60.222 44.000 0.00 0.00 0.00 1.90
579 580 4.287067 GCCTATTTCCTCCACCTCATCATA 59.713 45.833 0.00 0.00 0.00 2.15
580 581 3.073650 GCCTATTTCCTCCACCTCATCAT 59.926 47.826 0.00 0.00 0.00 2.45
581 582 2.439507 GCCTATTTCCTCCACCTCATCA 59.560 50.000 0.00 0.00 0.00 3.07
582 583 2.548920 CGCCTATTTCCTCCACCTCATC 60.549 54.545 0.00 0.00 0.00 2.92
583 584 1.417890 CGCCTATTTCCTCCACCTCAT 59.582 52.381 0.00 0.00 0.00 2.90
584 585 0.830648 CGCCTATTTCCTCCACCTCA 59.169 55.000 0.00 0.00 0.00 3.86
585 586 1.069358 CTCGCCTATTTCCTCCACCTC 59.931 57.143 0.00 0.00 0.00 3.85
586 587 1.123928 CTCGCCTATTTCCTCCACCT 58.876 55.000 0.00 0.00 0.00 4.00
587 588 0.106894 CCTCGCCTATTTCCTCCACC 59.893 60.000 0.00 0.00 0.00 4.61
588 589 1.120530 TCCTCGCCTATTTCCTCCAC 58.879 55.000 0.00 0.00 0.00 4.02
589 590 1.874129 TTCCTCGCCTATTTCCTCCA 58.126 50.000 0.00 0.00 0.00 3.86
594 595 5.012328 TCTTCTCTTTCCTCGCCTATTTC 57.988 43.478 0.00 0.00 0.00 2.17
601 602 3.620821 CCATCTTTCTTCTCTTTCCTCGC 59.379 47.826 0.00 0.00 0.00 5.03
608 609 9.454859 CTATTTACAACCCATCTTTCTTCTCTT 57.545 33.333 0.00 0.00 0.00 2.85
610 611 8.794335 ACTATTTACAACCCATCTTTCTTCTC 57.206 34.615 0.00 0.00 0.00 2.87
642 643 0.947244 GTGTGTTGGAGCTCAGGTTG 59.053 55.000 17.19 0.00 0.00 3.77
644 645 0.839946 AAGTGTGTTGGAGCTCAGGT 59.160 50.000 17.19 0.00 0.00 4.00
668 669 5.370880 AGTGATTAGCCCCACATTATTCTCT 59.629 40.000 0.00 0.00 35.84 3.10
796 2267 3.005791 GGTGCACCTGTTTTGATTTAGCT 59.994 43.478 29.12 0.00 0.00 3.32
819 2290 1.140852 TCGGGGAAATATCTGGTGCAG 59.859 52.381 0.00 0.00 0.00 4.41
823 2294 1.202651 CGCTTCGGGGAAATATCTGGT 60.203 52.381 0.00 0.00 0.00 4.00
1312 2787 2.167900 ACCCTTTCGCTACGCTTTCTAT 59.832 45.455 0.00 0.00 0.00 1.98
1342 2817 1.865788 GCCGCTTGCTTCCACATCAA 61.866 55.000 0.00 0.00 36.87 2.57
1409 2884 0.322816 TGCAGCCAAGTTCATCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
1412 2887 2.012673 CTACTGCAGCCAAGTTCATCC 58.987 52.381 15.27 0.00 0.00 3.51
1463 2938 1.934463 CATAGGCGTGCATCGAACC 59.066 57.895 11.94 5.38 42.86 3.62
1482 2957 0.667487 AGACGGCACAACACAGATCG 60.667 55.000 0.00 0.00 0.00 3.69
1578 3054 0.033366 GGCAGCAAACGGGAAAATGT 59.967 50.000 0.00 0.00 0.00 2.71
1611 3087 8.870075 ATTTTGGAAAAGCAGTACTAATCTCT 57.130 30.769 0.00 0.00 0.00 3.10
1636 3112 2.398588 AGTTCTGGTTCCACTGAGTGA 58.601 47.619 15.33 0.00 35.23 3.41
1646 3122 2.418976 GCGGTGGAAATAGTTCTGGTTC 59.581 50.000 2.56 0.00 33.92 3.62
1663 3139 4.922026 GGTGTCCGGTTGTGCGGT 62.922 66.667 0.00 0.00 0.00 5.68
1665 3141 2.702751 TACTGGTGTCCGGTTGTGCG 62.703 60.000 0.00 0.00 40.77 5.34
1694 3170 4.679654 CAGTTATCAGCGACGCAATATACA 59.320 41.667 23.70 2.21 0.00 2.29
1695 3171 4.915667 TCAGTTATCAGCGACGCAATATAC 59.084 41.667 23.70 13.64 0.00 1.47
1699 3181 2.293677 TCAGTTATCAGCGACGCAAT 57.706 45.000 23.70 16.82 0.00 3.56
1706 3188 7.540400 CAGGATAGTCTTATTCAGTTATCAGCG 59.460 40.741 0.00 0.00 0.00 5.18
1707 3189 7.330700 GCAGGATAGTCTTATTCAGTTATCAGC 59.669 40.741 0.00 0.00 0.00 4.26
1860 3345 2.519013 AGAAACTTCCTTGCATCCCAC 58.481 47.619 0.00 0.00 0.00 4.61
1884 3369 6.739331 AGAGATGAAATAACTCCGGAAGAT 57.261 37.500 5.23 0.00 0.00 2.40
1890 3375 5.276584 CGCAGAAAGAGATGAAATAACTCCG 60.277 44.000 0.00 0.00 0.00 4.63
2086 3572 9.967346 GCAACTAGTCATGAGTATATCAAGTTA 57.033 33.333 10.70 0.00 42.53 2.24
2101 3587 3.895232 AACGGAGATGCAACTAGTCAT 57.105 42.857 0.00 0.00 0.00 3.06
2167 3662 9.131791 GAATTGGGGTATTGATAAACATGTACT 57.868 33.333 0.00 0.00 0.00 2.73
2168 3663 8.908903 TGAATTGGGGTATTGATAAACATGTAC 58.091 33.333 0.00 0.00 0.00 2.90
2169 3664 9.130661 CTGAATTGGGGTATTGATAAACATGTA 57.869 33.333 0.00 0.00 0.00 2.29
2252 3747 3.604582 AGACTATCTTTCAGCAAGGTGC 58.395 45.455 0.00 0.00 45.46 5.01
2330 3825 3.202818 ACCTCATGAATGACAAGGCCATA 59.797 43.478 5.01 0.00 31.59 2.74
2331 3826 2.024655 ACCTCATGAATGACAAGGCCAT 60.025 45.455 5.01 0.00 31.59 4.40
2378 3909 2.993220 CAGCGTCACTGCACAACTATAA 59.007 45.455 0.00 0.00 40.19 0.98
2388 3955 3.031964 GCACATCCAGCGTCACTGC 62.032 63.158 0.00 0.00 45.78 4.40
2576 4149 6.422776 AAGTTAAACTGGCAGACGATTATG 57.577 37.500 23.66 0.00 0.00 1.90
2580 4153 5.938125 ACATAAAGTTAAACTGGCAGACGAT 59.062 36.000 23.66 6.43 0.00 3.73
2662 4236 7.044181 CCATACTGAGAAAAGAGCTTATGTGA 58.956 38.462 0.00 0.00 0.00 3.58
2683 4257 9.653287 CGAGAAATATATGCTTAGAAACCCATA 57.347 33.333 0.00 0.00 0.00 2.74
2705 4279 6.183360 TGCATCATACATTACCTGTAACGAGA 60.183 38.462 0.00 0.00 43.42 4.04
2869 4457 6.889722 TGGAAAGGAAACAATAGACCATTAGG 59.110 38.462 0.00 0.00 42.21 2.69
3153 4937 0.250553 TACAACCAACAAGGGCTCCG 60.251 55.000 0.00 0.00 43.89 4.63
3159 4943 2.478894 CGCTACTGTACAACCAACAAGG 59.521 50.000 0.00 0.00 45.67 3.61
3175 4959 7.506328 AAGAATTCCCCATTAAATACGCTAC 57.494 36.000 0.65 0.00 0.00 3.58
3200 4984 7.041721 TGCCAACTACAGTATTTCTCATACAG 58.958 38.462 0.00 0.00 0.00 2.74
3287 5072 7.308229 GCACTTTATATGGCCAGAGATACAAAG 60.308 40.741 13.05 12.11 28.94 2.77
3333 5118 1.476488 ACCAGCAAAGAACAACACACC 59.524 47.619 0.00 0.00 0.00 4.16
3372 5157 4.001652 TCGACGACCATCATCTATCTACC 58.998 47.826 0.00 0.00 0.00 3.18
3378 5163 5.007921 TCGTAAATTCGACGACCATCATCTA 59.992 40.000 10.55 0.00 43.99 1.98
3416 5201 2.038007 AGAGAGCAAGCCGGGAGA 59.962 61.111 2.18 0.00 0.00 3.71
3482 5267 2.034221 AAGAACAAGGCGAGGGGC 59.966 61.111 0.00 0.00 42.51 5.80
3483 5268 0.955919 GACAAGAACAAGGCGAGGGG 60.956 60.000 0.00 0.00 0.00 4.79
3484 5269 0.035458 AGACAAGAACAAGGCGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
3485 5270 1.801178 GAAGACAAGAACAAGGCGAGG 59.199 52.381 0.00 0.00 0.00 4.63
3486 5271 2.483876 TGAAGACAAGAACAAGGCGAG 58.516 47.619 0.00 0.00 0.00 5.03
3487 5272 2.613026 TGAAGACAAGAACAAGGCGA 57.387 45.000 0.00 0.00 0.00 5.54
3488 5273 2.160417 GGATGAAGACAAGAACAAGGCG 59.840 50.000 0.00 0.00 0.00 5.52
3489 5274 2.489722 GGGATGAAGACAAGAACAAGGC 59.510 50.000 0.00 0.00 0.00 4.35
3490 5275 3.084786 GGGGATGAAGACAAGAACAAGG 58.915 50.000 0.00 0.00 0.00 3.61
3491 5276 4.006319 GAGGGGATGAAGACAAGAACAAG 58.994 47.826 0.00 0.00 0.00 3.16
3492 5277 3.244911 GGAGGGGATGAAGACAAGAACAA 60.245 47.826 0.00 0.00 0.00 2.83
3493 5278 2.305927 GGAGGGGATGAAGACAAGAACA 59.694 50.000 0.00 0.00 0.00 3.18
3494 5279 2.356227 GGGAGGGGATGAAGACAAGAAC 60.356 54.545 0.00 0.00 0.00 3.01
3495 5280 1.916181 GGGAGGGGATGAAGACAAGAA 59.084 52.381 0.00 0.00 0.00 2.52
3496 5281 1.203428 TGGGAGGGGATGAAGACAAGA 60.203 52.381 0.00 0.00 0.00 3.02
3534 5319 2.497675 TGGAGAATCTGGAGAAACCTCG 59.502 50.000 0.00 0.00 39.86 4.63
3615 5400 5.063564 GTCGTAGCCCAAAGAGAAATGTAAG 59.936 44.000 0.00 0.00 0.00 2.34
3621 5406 1.695242 TGGTCGTAGCCCAAAGAGAAA 59.305 47.619 0.00 0.00 0.00 2.52
3694 5479 2.744202 GCGAGAACAAGTGATGGTGATT 59.256 45.455 0.00 0.00 0.00 2.57
3773 5558 7.053498 ACCAAATCAAAAACCTTAACAATGCT 58.947 30.769 0.00 0.00 0.00 3.79
3795 5580 5.008217 CAGTTTACATGAGAAACCGAAACCA 59.992 40.000 18.24 0.00 37.48 3.67
3833 5619 8.514594 GGAAATACATCAGTCTGTTTTGAATCA 58.485 33.333 0.00 0.00 0.00 2.57
3859 5645 7.148373 CCCTTTCCACTAATTTTGCAATCAATG 60.148 37.037 0.00 0.00 31.33 2.82
3860 5646 6.880529 CCCTTTCCACTAATTTTGCAATCAAT 59.119 34.615 0.00 0.00 31.33 2.57
3876 5662 3.056328 GCTCGCACCCCTTTCCAC 61.056 66.667 0.00 0.00 0.00 4.02
3907 5696 5.528320 TGTAAGAAACCGAATCGAAAACCTT 59.472 36.000 3.36 3.66 0.00 3.50
3908 5697 5.058490 TGTAAGAAACCGAATCGAAAACCT 58.942 37.500 3.36 0.00 0.00 3.50
3926 5715 7.639945 GGAAAGAATGATCCGGTTTATGTAAG 58.360 38.462 0.00 0.00 0.00 2.34
3951 5740 5.802451 CCACCTGTATATCGATCTCATTTCG 59.198 44.000 0.00 0.00 37.94 3.46
4129 5949 5.915175 TGCAAGGCAAAATGCATAATGATA 58.085 33.333 14.08 0.00 46.87 2.15
4130 5950 4.771903 TGCAAGGCAAAATGCATAATGAT 58.228 34.783 14.08 1.24 46.87 2.45
4131 5951 4.203654 TGCAAGGCAAAATGCATAATGA 57.796 36.364 14.08 0.00 46.87 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.