Multiple sequence alignment - TraesCS1A01G368600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G368600 chr1A 100.000 3047 0 0 1 3047 546504690 546501644 0.000000e+00 5627
1 TraesCS1A01G368600 chr1B 91.860 3059 230 10 4 3046 621948484 621945429 0.000000e+00 4252
2 TraesCS1A01G368600 chr1D 93.641 2799 159 10 121 2902 451942063 451939267 0.000000e+00 4165
3 TraesCS1A01G368600 chr1D 91.946 149 10 2 2898 3046 451884622 451884476 1.110000e-49 207
4 TraesCS1A01G368600 chr6D 83.333 618 85 11 1233 1849 361520411 361521011 3.430000e-154 555
5 TraesCS1A01G368600 chr6B 82.835 635 84 15 1233 1864 543213231 543213843 2.070000e-151 545
6 TraesCS1A01G368600 chr6A 81.388 634 98 12 1233 1864 502671532 502672147 1.630000e-137 499
7 TraesCS1A01G368600 chr4A 73.034 534 124 14 1517 2046 726576607 726576090 1.450000e-38 171
8 TraesCS1A01G368600 chr3B 72.575 536 137 8 1515 2045 615783686 615783156 1.880000e-37 167
9 TraesCS1A01G368600 chr7D 72.414 522 120 18 1519 2034 11261550 11262053 8.800000e-31 145
10 TraesCS1A01G368600 chr7A 71.715 548 135 14 1491 2034 10831345 10831876 5.300000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G368600 chr1A 546501644 546504690 3046 True 5627 5627 100.000 1 3047 1 chr1A.!!$R1 3046
1 TraesCS1A01G368600 chr1B 621945429 621948484 3055 True 4252 4252 91.860 4 3046 1 chr1B.!!$R1 3042
2 TraesCS1A01G368600 chr1D 451939267 451942063 2796 True 4165 4165 93.641 121 2902 1 chr1D.!!$R2 2781
3 TraesCS1A01G368600 chr6D 361520411 361521011 600 False 555 555 83.333 1233 1849 1 chr6D.!!$F1 616
4 TraesCS1A01G368600 chr6B 543213231 543213843 612 False 545 545 82.835 1233 1864 1 chr6B.!!$F1 631
5 TraesCS1A01G368600 chr6A 502671532 502672147 615 False 499 499 81.388 1233 1864 1 chr6A.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 796 0.043637 TAGGGGTAGGGTTGGACCAG 59.956 60.0 0.0 0.0 41.02 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 2399 1.070134 ACAGCTGCGGAAGTAGTTCAA 59.93 47.619 15.27 0.0 46.25 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.856415 ACTCTCAAATAGGCAAGTAGAGAAAT 58.144 34.615 0.00 0.00 34.48 2.17
69 70 8.939929 CAAGTAGAGAAATTCTCAAGCACAATA 58.060 33.333 23.20 3.43 45.73 1.90
102 103 0.320421 CGAGATCCAACAACCCACGT 60.320 55.000 0.00 0.00 0.00 4.49
158 159 7.798071 ACTCCATTATCGTATTTCCCACTTAA 58.202 34.615 0.00 0.00 0.00 1.85
189 190 9.990360 GACTATTGGGAAACTTTGGAAATTTAA 57.010 29.630 0.00 0.00 0.00 1.52
191 192 9.771534 CTATTGGGAAACTTTGGAAATTTAACA 57.228 29.630 0.00 0.00 0.00 2.41
337 338 2.257691 TGGTAAAGCACGTTTAGGCA 57.742 45.000 0.00 0.00 30.93 4.75
352 353 2.507339 AGGCAACAAAAATGACCGTG 57.493 45.000 0.00 0.00 41.41 4.94
365 366 2.818274 CCGTGGGGACTAAAGCGC 60.818 66.667 0.00 0.00 34.06 5.92
411 424 7.396418 AGTGCATTTTGGGATAACATTGATTT 58.604 30.769 0.00 0.00 0.00 2.17
413 426 7.119553 GTGCATTTTGGGATAACATTGATTTGT 59.880 33.333 0.00 0.00 0.00 2.83
464 477 8.694540 ACATAACATTAATTCATGGCTAAAGCA 58.305 29.630 4.07 0.00 44.36 3.91
473 486 5.664294 TCATGGCTAAAGCATGTTTTGAT 57.336 34.783 16.81 2.24 44.36 2.57
474 487 6.040209 TCATGGCTAAAGCATGTTTTGATT 57.960 33.333 16.81 0.00 44.36 2.57
481 494 7.975616 GGCTAAAGCATGTTTTGATTGAGAATA 59.024 33.333 16.81 0.00 44.36 1.75
499 512 7.282585 TGAGAATATGACCATTGGGAGTAAAG 58.717 38.462 7.78 0.00 38.05 1.85
542 556 3.188492 TCGTGTCTAAAGCGTGTTTTCA 58.812 40.909 0.00 0.00 0.00 2.69
575 589 3.634504 ACATTGATTCATGGCTAAGGCA 58.365 40.909 0.00 0.00 43.52 4.75
587 601 1.339055 GCTAAGGCATGTGTGACCTCA 60.339 52.381 0.00 0.00 38.54 3.86
610 624 7.500992 TCAAATCTGACAGTTGAGACTAAAGT 58.499 34.615 1.59 0.00 33.90 2.66
617 631 6.318648 TGACAGTTGAGACTAAAGTGCATTTT 59.681 34.615 12.16 12.16 33.90 1.82
622 636 3.500343 AGACTAAAGTGCATTTTGGCCT 58.500 40.909 16.66 9.07 32.63 5.19
628 642 0.968405 GTGCATTTTGGCCTTCTGGA 59.032 50.000 3.32 0.00 34.57 3.86
670 684 6.416631 TTTTGGGATGACATTGATTGACAA 57.583 33.333 0.00 0.00 42.95 3.18
782 796 0.043637 TAGGGGTAGGGTTGGACCAG 59.956 60.000 0.00 0.00 41.02 4.00
783 797 1.229723 GGGGTAGGGTTGGACCAGA 60.230 63.158 0.00 0.00 41.02 3.86
853 867 1.306654 TACCTCCTTCCCCATGCGT 60.307 57.895 0.00 0.00 0.00 5.24
879 893 0.253820 ATCACCATCAACCCCTCCCT 60.254 55.000 0.00 0.00 0.00 4.20
890 904 1.068121 CCCCTCCCTAGCCAATTAGG 58.932 60.000 0.00 0.00 39.99 2.69
891 905 1.416013 CCCCTCCCTAGCCAATTAGGA 60.416 57.143 0.71 0.00 42.39 2.94
915 929 0.183731 CCTCCCCTACTTTGATGGCC 59.816 60.000 0.00 0.00 0.00 5.36
921 935 2.239654 CCCTACTTTGATGGCCTGAGAA 59.760 50.000 3.32 0.00 0.00 2.87
1011 1026 1.300233 GCCTAGAATGAGGGCGTCG 60.300 63.158 2.41 0.00 37.06 5.12
1032 1047 0.819582 CATCATTGTGCACCCCTTCC 59.180 55.000 15.69 0.00 0.00 3.46
1046 1061 1.614241 CCTTCCGTGGTCCGAGGAAT 61.614 60.000 15.67 0.00 42.43 3.01
1047 1062 0.460284 CTTCCGTGGTCCGAGGAATG 60.460 60.000 15.67 8.46 42.43 2.67
1063 1078 5.563475 CGAGGAATGCACACTTTCAAGATTT 60.563 40.000 0.00 0.00 32.86 2.17
1066 1081 6.716628 AGGAATGCACACTTTCAAGATTTCTA 59.283 34.615 0.00 0.00 32.86 2.10
1073 1088 7.307989 GCACACTTTCAAGATTTCTAGCTACAA 60.308 37.037 0.00 0.00 0.00 2.41
1117 1132 0.608856 TAGGTACTTGTCGTCCGCCA 60.609 55.000 0.00 0.00 41.75 5.69
1199 1214 4.223556 TGAAAATTGGGGACTATGCGTA 57.776 40.909 0.00 0.00 0.00 4.42
1252 1267 2.035155 TGAGGGCGTCCTTCGAGA 59.965 61.111 11.49 0.00 45.05 4.04
1362 1377 4.654262 CCCTATGTAGGCAAAGACTTCCTA 59.346 45.833 0.31 0.00 42.26 2.94
1371 1386 3.440522 GCAAAGACTTCCTACAACCATCC 59.559 47.826 0.00 0.00 0.00 3.51
1391 1406 4.023980 TCCTTGTACCTACAGGATGACAG 58.976 47.826 1.29 0.00 39.69 3.51
1396 1411 3.116096 ACCTACAGGATGACAGCCTTA 57.884 47.619 10.23 5.60 39.69 2.69
1417 1432 8.790718 GCCTTATGATTGAATGTTCTATCACAT 58.209 33.333 17.68 9.15 46.55 3.21
1431 1446 6.244552 TCTATCACATTTCTGGCAGAATCT 57.755 37.500 28.98 17.22 33.67 2.40
1479 1494 0.036010 ACATTCAAGTGCCTCCCTCG 60.036 55.000 0.00 0.00 0.00 4.63
1497 1512 7.397761 CCTCCCTCGAACCTATCTAATAATCTT 59.602 40.741 0.00 0.00 0.00 2.40
1528 1543 1.451449 TAAGGCAGGGGAGGAAACAA 58.549 50.000 0.00 0.00 0.00 2.83
1531 1546 2.000048 AGGCAGGGGAGGAAACAAATA 59.000 47.619 0.00 0.00 0.00 1.40
1652 1667 1.349026 CAGGATAAGGCGGACCATGAT 59.651 52.381 0.00 0.00 39.06 2.45
1871 1886 7.227314 TGTTCAGAACGTCACTACTACTTTAGA 59.773 37.037 8.80 0.00 0.00 2.10
1879 1894 6.482641 CGTCACTACTACTTTAGATCTAGCCA 59.517 42.308 2.02 0.00 0.00 4.75
1882 1897 8.053963 TCACTACTACTTTAGATCTAGCCAACT 58.946 37.037 2.02 0.00 0.00 3.16
1907 1922 6.700960 TGTTATCATTGCAACCAACTCAAAAG 59.299 34.615 0.00 0.00 32.95 2.27
1990 2005 6.069381 AGGGTATGCTAAACTCAAAAGATCCT 60.069 38.462 0.00 0.00 0.00 3.24
2036 2051 1.276622 GAGAGGGCAACTAAGTCCCA 58.723 55.000 0.00 0.00 42.52 4.37
2051 2066 5.806654 AAGTCCCACAAAATTTAGCATGT 57.193 34.783 0.00 0.00 0.00 3.21
2213 2228 8.239998 TCTCATAGCTCATCTTATACATGAACG 58.760 37.037 0.00 0.00 29.74 3.95
2261 2276 9.871238 GTGTTCTCTAAAATACTATGGTCTTCA 57.129 33.333 0.00 0.00 0.00 3.02
2334 2349 7.759489 TGAATTTATCAAAGCACTACCAGTT 57.241 32.000 0.00 0.00 34.30 3.16
2356 2371 7.118390 CAGTTAGTATCCTAAATAGGTGCATGC 59.882 40.741 11.82 11.82 44.02 4.06
2396 2411 4.886496 ACCTAGGTGTTGAACTACTTCC 57.114 45.455 15.42 0.00 0.00 3.46
2403 2418 1.461127 GTTGAACTACTTCCGCAGCTG 59.539 52.381 10.11 10.11 0.00 4.24
2436 2451 5.207354 AGATGTTGATAGGAGCAAGAGAGA 58.793 41.667 0.00 0.00 0.00 3.10
2519 2534 8.078060 TGATATTGTCTGATTGAAGTAGGTCA 57.922 34.615 0.00 0.00 0.00 4.02
2525 2540 8.134202 TGTCTGATTGAAGTAGGTCAGAATAA 57.866 34.615 5.59 0.00 45.98 1.40
2605 2620 4.412843 TCATGCCATGCCTCATTAATCAT 58.587 39.130 0.00 0.00 0.00 2.45
2649 2664 5.220931 GCCAAAACACATAGCAATAGAGAGG 60.221 44.000 0.00 0.00 0.00 3.69
2691 2706 4.935205 CCCATCTCTTACGTGTGATTTTCA 59.065 41.667 0.00 0.00 0.00 2.69
2755 2770 3.716431 AGGCCACATGATTTCCAAATCT 58.284 40.909 5.01 0.00 43.97 2.40
2768 2783 9.753674 TGATTTCCAAATCTATCTAAAAGGTGT 57.246 29.630 12.22 0.00 43.97 4.16
2770 2785 9.753674 ATTTCCAAATCTATCTAAAAGGTGTCA 57.246 29.630 0.00 0.00 0.00 3.58
2771 2786 9.753674 TTTCCAAATCTATCTAAAAGGTGTCAT 57.246 29.630 0.00 0.00 0.00 3.06
2856 2872 4.396166 CACCGTAGAAGCTCCAAAATCAAT 59.604 41.667 0.00 0.00 0.00 2.57
2870 2886 9.793252 CTCCAAAATCAATACTACCATTCAAAG 57.207 33.333 0.00 0.00 0.00 2.77
2874 2890 7.944729 AATCAATACTACCATTCAAAGCACT 57.055 32.000 0.00 0.00 0.00 4.40
2891 2909 9.399797 TCAAAGCACTTACATTGAGAATATCAT 57.600 29.630 0.00 0.00 37.89 2.45
2935 2953 1.673168 CAATGGTAGAGGAGGCAAGC 58.327 55.000 0.00 0.00 0.00 4.01
2947 2965 1.599542 GAGGCAAGCGGAACATATCAC 59.400 52.381 0.00 0.00 0.00 3.06
3028 3046 7.495901 TGGCAAAATAATGAAGTTGTGAGAAA 58.504 30.769 0.00 0.00 0.00 2.52
3046 3064 9.521503 TGTGAGAAATTATCTTGAAGAGTATCG 57.478 33.333 0.00 0.00 38.48 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.940654 GCTTGAGAATTTCTCTACTTGCCT 59.059 41.667 23.29 0.00 43.73 4.75
55 56 2.224744 TGGCCTGTATTGTGCTTGAGAA 60.225 45.455 3.32 0.00 0.00 2.87
69 70 1.071385 GATCTCGAATGGATGGCCTGT 59.929 52.381 3.32 0.00 34.31 4.00
158 159 8.950007 TTCCAAAGTTTCCCAATAGTCTATTT 57.050 30.769 2.12 0.00 0.00 1.40
337 338 1.684450 GTCCCCACGGTCATTTTTGTT 59.316 47.619 0.00 0.00 0.00 2.83
352 353 0.109919 CAAAACGCGCTTTAGTCCCC 60.110 55.000 5.73 0.00 0.00 4.81
365 366 2.373540 TAGTCCCATCGGTCAAAACG 57.626 50.000 0.00 0.00 0.00 3.60
411 424 5.440234 TCCAAAAACGCATTTTAGCTACA 57.560 34.783 0.00 0.00 39.20 2.74
413 426 7.539366 GTGTTATCCAAAAACGCATTTTAGCTA 59.461 33.333 0.00 0.00 39.20 3.32
464 477 9.811995 CAATGGTCATATTCTCAATCAAAACAT 57.188 29.630 0.00 0.00 0.00 2.71
473 486 5.715439 ACTCCCAATGGTCATATTCTCAA 57.285 39.130 0.00 0.00 0.00 3.02
474 487 6.823286 TTACTCCCAATGGTCATATTCTCA 57.177 37.500 0.00 0.00 0.00 3.27
481 494 8.664669 AAAATAACTTTACTCCCAATGGTCAT 57.335 30.769 0.00 0.00 0.00 3.06
542 556 8.355169 GCCATGAATCAATGTTATGTGTTATCT 58.645 33.333 0.00 0.00 0.00 1.98
575 589 4.202398 ACTGTCAGATTTGAGGTCACACAT 60.202 41.667 6.91 0.00 32.98 3.21
587 601 6.203723 GCACTTTAGTCTCAACTGTCAGATTT 59.796 38.462 6.91 0.00 36.92 2.17
610 624 0.968405 GTCCAGAAGGCCAAAATGCA 59.032 50.000 5.01 0.00 33.74 3.96
617 631 1.383799 CCCAATGTCCAGAAGGCCA 59.616 57.895 5.01 0.00 33.74 5.36
622 636 4.447138 ACTTTACACCCAATGTCCAGAA 57.553 40.909 0.00 0.00 42.09 3.02
628 642 7.071321 TCCCAAAATAAACTTTACACCCAATGT 59.929 33.333 0.00 0.00 46.06 2.71
670 684 2.038387 ATCCCGAAATGCGCTTTAGT 57.962 45.000 9.73 0.00 39.11 2.24
783 797 2.171840 CGGCTATGGAGTATGCCTACT 58.828 52.381 0.79 0.79 42.90 2.57
853 867 2.620367 GGGGTTGATGGTGATGTTAGCA 60.620 50.000 0.00 0.00 0.00 3.49
890 904 3.111741 TCAAAGTAGGGGAGGTAGGTC 57.888 52.381 0.00 0.00 0.00 3.85
891 905 3.385115 CATCAAAGTAGGGGAGGTAGGT 58.615 50.000 0.00 0.00 0.00 3.08
921 935 2.040412 GTTTCTGGATGGGGAGAACTGT 59.960 50.000 0.00 0.00 0.00 3.55
1011 1026 1.259840 AAGGGGTGCACAATGATGCC 61.260 55.000 20.43 8.37 45.50 4.40
1032 1047 2.100631 GTGCATTCCTCGGACCACG 61.101 63.158 0.00 0.00 46.11 4.94
1046 1061 5.065914 AGCTAGAAATCTTGAAAGTGTGCA 58.934 37.500 0.00 0.00 0.00 4.57
1047 1062 5.619625 AGCTAGAAATCTTGAAAGTGTGC 57.380 39.130 0.00 0.00 0.00 4.57
1063 1078 4.322801 GCTCCTTTGAAGGTTGTAGCTAGA 60.323 45.833 9.48 0.00 46.54 2.43
1066 1081 2.106511 TGCTCCTTTGAAGGTTGTAGCT 59.893 45.455 17.10 0.00 46.54 3.32
1073 1088 0.678048 GCCGATGCTCCTTTGAAGGT 60.678 55.000 9.48 0.00 46.54 3.50
1084 1099 1.324740 TACCTACCAACGCCGATGCT 61.325 55.000 0.00 0.00 34.43 3.79
1087 1102 1.134907 CAAGTACCTACCAACGCCGAT 60.135 52.381 0.00 0.00 0.00 4.18
1117 1132 1.105167 TATCCGCCGACATCGAAGGT 61.105 55.000 2.09 0.00 43.02 3.50
1199 1214 5.183904 GTGCTCACAAAATCTAGGGAAATGT 59.816 40.000 0.00 0.00 0.00 2.71
1294 1309 1.743958 CAGCATCTTTTGGGAGAGCAG 59.256 52.381 0.00 0.00 0.00 4.24
1362 1377 3.263425 CCTGTAGGTACAAGGATGGTTGT 59.737 47.826 0.00 0.00 43.22 3.32
1371 1386 3.430929 GGCTGTCATCCTGTAGGTACAAG 60.431 52.174 0.00 0.00 35.50 3.16
1391 1406 8.158169 TGTGATAGAACATTCAATCATAAGGC 57.842 34.615 0.00 0.00 0.00 4.35
1417 1432 3.873801 GCCACCTTAGATTCTGCCAGAAA 60.874 47.826 11.81 0.00 37.82 2.52
1431 1446 1.068333 GTCGTCGTTACTGCCACCTTA 60.068 52.381 0.00 0.00 0.00 2.69
1497 1512 3.202151 CCCCTGCCTTAAGTAATTCTCCA 59.798 47.826 0.97 0.00 0.00 3.86
1528 1543 5.012148 CCCCTCTAACCTCGAATGTGATATT 59.988 44.000 0.00 0.00 0.00 1.28
1531 1546 2.700897 CCCCTCTAACCTCGAATGTGAT 59.299 50.000 0.00 0.00 0.00 3.06
1610 1625 1.153086 CCCATCGGCCCAAAGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
1637 1652 3.506398 TCTATGATCATGGTCCGCCTTA 58.494 45.455 18.72 0.00 35.27 2.69
1652 1667 4.483950 AGCAGGCTGTATACCTTCTATGA 58.516 43.478 17.16 0.00 34.42 2.15
1744 1759 3.896888 TGCTTGACCATTTCTTCACCATT 59.103 39.130 0.00 0.00 0.00 3.16
1871 1886 5.439721 TGCAATGATAACAGTTGGCTAGAT 58.560 37.500 0.00 0.00 0.00 1.98
1879 1894 5.301551 TGAGTTGGTTGCAATGATAACAGTT 59.698 36.000 0.59 0.00 0.00 3.16
1882 1897 5.781210 TTGAGTTGGTTGCAATGATAACA 57.219 34.783 0.59 0.00 0.00 2.41
1907 1922 3.503748 AGTGATAAACTCAAGGCAAGCAC 59.496 43.478 0.00 0.00 31.64 4.40
2006 2021 7.337942 ACTTAGTTGCCCTCTCAAAAATATCAG 59.662 37.037 0.00 0.00 0.00 2.90
2036 2051 7.669427 TCAAGGATGAACATGCTAAATTTTGT 58.331 30.769 9.04 0.00 38.60 2.83
2065 2080 9.799106 AAGCCAAATGTTCATTAGCTATATAGT 57.201 29.630 17.27 1.56 0.00 2.12
2188 2203 8.026026 ACGTTCATGTATAAGATGAGCTATGAG 58.974 37.037 0.00 0.00 31.52 2.90
2190 2205 8.526218 AACGTTCATGTATAAGATGAGCTATG 57.474 34.615 0.00 0.00 31.52 2.23
2206 2221 5.046529 AGCTAGCAGAGATTAACGTTCATG 58.953 41.667 18.83 0.00 0.00 3.07
2292 2307 5.886960 ATTCAAGGAGCACACAAATAGAC 57.113 39.130 0.00 0.00 0.00 2.59
2384 2399 1.070134 ACAGCTGCGGAAGTAGTTCAA 59.930 47.619 15.27 0.00 46.25 2.69
2396 2411 2.789491 TCTCTGATGATACAGCTGCG 57.211 50.000 15.27 0.00 37.75 5.18
2403 2418 7.035004 GCTCCTATCAACATCTCTGATGATAC 58.965 42.308 13.63 0.00 41.52 2.24
2461 2476 8.267183 TCTTGCATAGATTCTTTGAATCTACCA 58.733 33.333 23.80 20.70 40.74 3.25
2525 2540 6.390504 TGGTCTGGGTTATCCTATTGTCTAT 58.609 40.000 0.00 0.00 36.20 1.98
2527 2542 4.631234 TGGTCTGGGTTATCCTATTGTCT 58.369 43.478 0.00 0.00 36.20 3.41
2540 2555 3.843422 TGATGAATGTTTTGGTCTGGGT 58.157 40.909 0.00 0.00 0.00 4.51
2605 2620 7.643569 TTGGCTATTGAATTGCTTCAGATTA 57.356 32.000 11.08 0.00 42.19 1.75
2691 2706 1.852965 CCTCAATGGGGTTCCTGGTAT 59.147 52.381 0.00 0.00 0.00 2.73
2755 2770 8.998814 TCCTAATTCCATGACACCTTTTAGATA 58.001 33.333 0.00 0.00 0.00 1.98
2809 2824 8.962679 GTGTGGGTATAGATATTCCAACAAAAA 58.037 33.333 7.16 0.00 38.35 1.94
2826 2842 1.755380 GAGCTTCTACGGTGTGGGTAT 59.245 52.381 0.00 0.00 0.00 2.73
2828 2844 1.542187 GGAGCTTCTACGGTGTGGGT 61.542 60.000 0.00 0.00 0.00 4.51
2856 2872 7.880713 TCAATGTAAGTGCTTTGAATGGTAGTA 59.119 33.333 0.00 0.00 32.15 1.82
2870 2886 7.734924 TGGATGATATTCTCAATGTAAGTGC 57.265 36.000 0.00 0.00 37.44 4.40
2874 2890 7.946219 AGGCATTGGATGATATTCTCAATGTAA 59.054 33.333 13.49 0.00 43.63 2.41
2920 2938 1.614241 TTCCGCTTGCCTCCTCTACC 61.614 60.000 0.00 0.00 0.00 3.18
2924 2942 0.178068 TATGTTCCGCTTGCCTCCTC 59.822 55.000 0.00 0.00 0.00 3.71
2926 2944 1.230324 GATATGTTCCGCTTGCCTCC 58.770 55.000 0.00 0.00 0.00 4.30
2935 2953 9.591792 AGATGACAATATATGTGATATGTTCCG 57.408 33.333 0.00 0.00 44.12 4.30
2997 3015 8.225107 CACAACTTCATTATTTTGCCAAGAATG 58.775 33.333 6.71 6.71 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.