Multiple sequence alignment - TraesCS1A01G368500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G368500 chr1A 100.000 7885 0 0 1 7885 546321297 546329181 0.000000e+00 14561.0
1 TraesCS1A01G368500 chr1A 96.000 75 3 0 1 75 504587467 504587393 1.070000e-23 122.0
2 TraesCS1A01G368500 chr1D 96.767 6094 107 31 1591 7663 451876316 451882340 0.000000e+00 10080.0
3 TraesCS1A01G368500 chr1D 97.279 1360 32 2 73 1432 451874971 451876325 0.000000e+00 2302.0
4 TraesCS1A01G368500 chr1B 97.850 5441 101 10 1591 7021 621631624 621637058 0.000000e+00 9385.0
5 TraesCS1A01G368500 chr1B 96.723 1373 39 2 73 1439 621630269 621631641 0.000000e+00 2281.0
6 TraesCS1A01G368500 chr1B 88.020 409 24 14 7202 7609 621637068 621637452 2.000000e-125 460.0
7 TraesCS1A01G368500 chr1B 96.732 153 4 1 1445 1597 532007247 532007398 3.650000e-63 254.0
8 TraesCS1A01G368500 chr7D 99.310 145 1 0 1447 1591 377611696 377611840 6.070000e-66 263.0
9 TraesCS1A01G368500 chr7A 97.386 153 2 1 1435 1587 91083471 91083621 7.850000e-65 259.0
10 TraesCS1A01G368500 chr7A 96.104 77 3 0 1 77 47777902 47777826 8.310000e-25 126.0
11 TraesCS1A01G368500 chr7A 86.765 68 8 1 7687 7754 9192340 9192406 3.050000e-09 75.0
12 TraesCS1A01G368500 chr7A 80.000 85 14 3 7677 7758 5890624 5890708 8.540000e-05 60.2
13 TraesCS1A01G368500 chr6D 98.630 146 2 0 1445 1590 328906132 328906277 7.850000e-65 259.0
14 TraesCS1A01G368500 chr4D 97.987 149 2 1 1446 1594 504147109 504146962 2.820000e-64 257.0
15 TraesCS1A01G368500 chr4D 97.297 74 0 2 1 73 281075645 281075717 2.990000e-24 124.0
16 TraesCS1A01G368500 chr2D 96.178 157 4 2 1447 1602 198137335 198137180 1.020000e-63 255.0
17 TraesCS1A01G368500 chr6B 98.601 143 2 0 1447 1589 388728696 388728838 3.650000e-63 254.0
18 TraesCS1A01G368500 chr7B 95.541 157 6 1 1447 1603 516640915 516640760 4.720000e-62 250.0
19 TraesCS1A01G368500 chr7B 95.000 80 3 1 1 79 452161097 452161176 2.990000e-24 124.0
20 TraesCS1A01G368500 chr7B 88.136 59 6 1 7697 7754 662204436 662204494 1.420000e-07 69.4
21 TraesCS1A01G368500 chr2A 94.375 160 8 1 1446 1605 15460908 15461066 2.200000e-60 244.0
22 TraesCS1A01G368500 chr2A 97.333 75 2 0 1 75 285141634 285141708 2.310000e-25 128.0
23 TraesCS1A01G368500 chr2B 89.175 194 13 5 7697 7884 146664890 146665081 1.320000e-57 235.0
24 TraesCS1A01G368500 chr2B 88.136 59 6 1 7697 7754 148404750 148404808 1.420000e-07 69.4
25 TraesCS1A01G368500 chr2B 88.136 59 6 1 7697 7754 184651603 184651545 1.420000e-07 69.4
26 TraesCS1A01G368500 chr2B 87.931 58 7 0 7697 7754 403417237 403417180 1.420000e-07 69.4
27 TraesCS1A01G368500 chr3A 98.630 73 1 0 1 73 446838828 446838756 6.420000e-26 130.0
28 TraesCS1A01G368500 chr3A 98.630 73 1 0 1 73 488313821 488313893 6.420000e-26 130.0
29 TraesCS1A01G368500 chr3A 94.186 86 4 1 1 85 572739166 572739081 6.420000e-26 130.0
30 TraesCS1A01G368500 chr4A 96.104 77 3 0 1 77 470875340 470875416 8.310000e-25 126.0
31 TraesCS1A01G368500 chr5B 92.308 52 4 0 7697 7748 555215072 555215021 3.050000e-09 75.0
32 TraesCS1A01G368500 chr3B 88.136 59 6 1 7697 7754 728486842 728486900 1.420000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G368500 chr1A 546321297 546329181 7884 False 14561 14561 100.000000 1 7885 1 chr1A.!!$F1 7884
1 TraesCS1A01G368500 chr1D 451874971 451882340 7369 False 6191 10080 97.023000 73 7663 2 chr1D.!!$F1 7590
2 TraesCS1A01G368500 chr1B 621630269 621637452 7183 False 4042 9385 94.197667 73 7609 3 chr1B.!!$F2 7536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 356 0.250640 CTGCAGGACAAAGACAGCCT 60.251 55.000 5.57 0.00 0.00 4.58 F
1478 1484 0.326238 TAGCCTAGTGGTGGGAAGGG 60.326 60.000 0.00 0.00 35.27 3.95 F
1523 1529 0.476338 TTCAAGGCCTGGTACTTGCA 59.524 50.000 21.02 12.56 42.82 4.08 F
1524 1530 0.476338 TCAAGGCCTGGTACTTGCAA 59.524 50.000 21.02 0.00 42.82 4.08 F
1529 1535 1.066929 GGCCTGGTACTTGCAATTTGG 60.067 52.381 0.00 0.00 0.00 3.28 F
1530 1536 1.066929 GCCTGGTACTTGCAATTTGGG 60.067 52.381 0.00 0.00 0.00 4.12 F
3687 3696 0.250901 AGGCTGGCGAAGTGTTGATT 60.251 50.000 0.00 0.00 0.00 2.57 F
4573 4582 2.012673 GATGGTGAGAAAGCAAGCGAT 58.987 47.619 0.00 0.00 40.33 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 1771 0.033601 ATAATGGGAAAGGCCACGCA 60.034 50.000 5.01 11.13 38.95 5.24 R
3346 3354 3.099141 CACCCAATGCTCTAACCCAAAT 58.901 45.455 0.00 0.00 0.00 2.32 R
3492 3501 3.706594 CCCTCAGCTCTACATCACCTTTA 59.293 47.826 0.00 0.00 0.00 1.85 R
3562 3571 5.108518 CGCTTGATACATGCATTGAAAATCG 60.109 40.000 0.00 0.00 34.78 3.34 R
3687 3696 7.528996 AAAACTCTTGATGTTCATTCCATCA 57.471 32.000 0.00 0.00 45.14 3.07 R
3917 3926 3.928005 TGTTTATATACGTGGGCCCAA 57.072 42.857 30.64 12.75 0.00 4.12 R
4773 4782 1.341080 ACACAGCAATCCCCAAAAGG 58.659 50.000 0.00 0.00 0.00 3.11 R
6897 6917 0.248215 CTCAAATCGACGCCATTGCC 60.248 55.000 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.484818 ACATGCCACATAAGCAAAAATTTC 57.515 33.333 0.00 0.00 44.83 2.17
24 25 6.232692 ACATGCCACATAAGCAAAAATTTCT 58.767 32.000 0.00 0.00 44.83 2.52
25 26 6.369615 ACATGCCACATAAGCAAAAATTTCTC 59.630 34.615 0.00 0.00 44.83 2.87
26 27 4.922692 TGCCACATAAGCAAAAATTTCTCG 59.077 37.500 0.00 0.00 37.28 4.04
27 28 5.160641 GCCACATAAGCAAAAATTTCTCGA 58.839 37.500 0.00 0.00 0.00 4.04
28 29 5.633182 GCCACATAAGCAAAAATTTCTCGAA 59.367 36.000 0.00 0.00 0.00 3.71
29 30 6.183360 GCCACATAAGCAAAAATTTCTCGAAG 60.183 38.462 0.00 0.00 0.00 3.79
30 31 6.863126 CCACATAAGCAAAAATTTCTCGAAGT 59.137 34.615 0.00 0.00 0.00 3.01
31 32 7.148918 CCACATAAGCAAAAATTTCTCGAAGTG 60.149 37.037 0.00 0.00 0.00 3.16
32 33 7.379529 CACATAAGCAAAAATTTCTCGAAGTGT 59.620 33.333 0.00 0.00 0.00 3.55
33 34 7.379529 ACATAAGCAAAAATTTCTCGAAGTGTG 59.620 33.333 0.00 0.00 0.00 3.82
34 35 4.044426 AGCAAAAATTTCTCGAAGTGTGC 58.956 39.130 0.00 0.00 31.18 4.57
35 36 4.044426 GCAAAAATTTCTCGAAGTGTGCT 58.956 39.130 0.00 0.00 29.51 4.40
36 37 5.008613 AGCAAAAATTTCTCGAAGTGTGCTA 59.991 36.000 0.00 0.00 36.40 3.49
37 38 5.858581 GCAAAAATTTCTCGAAGTGTGCTAT 59.141 36.000 0.00 0.00 29.51 2.97
38 39 6.183359 GCAAAAATTTCTCGAAGTGTGCTATG 60.183 38.462 0.00 0.00 29.51 2.23
39 40 6.560253 AAAATTTCTCGAAGTGTGCTATGT 57.440 33.333 0.00 0.00 0.00 2.29
40 41 6.560253 AAATTTCTCGAAGTGTGCTATGTT 57.440 33.333 0.00 0.00 0.00 2.71
41 42 7.667043 AAATTTCTCGAAGTGTGCTATGTTA 57.333 32.000 0.00 0.00 0.00 2.41
42 43 6.648725 ATTTCTCGAAGTGTGCTATGTTAC 57.351 37.500 0.00 0.00 0.00 2.50
43 44 5.386958 TTCTCGAAGTGTGCTATGTTACT 57.613 39.130 0.00 0.00 0.00 2.24
44 45 6.505044 TTCTCGAAGTGTGCTATGTTACTA 57.495 37.500 0.00 0.00 0.00 1.82
45 46 6.694877 TCTCGAAGTGTGCTATGTTACTAT 57.305 37.500 0.00 0.00 0.00 2.12
46 47 6.726230 TCTCGAAGTGTGCTATGTTACTATC 58.274 40.000 0.00 0.00 0.00 2.08
47 48 6.542735 TCTCGAAGTGTGCTATGTTACTATCT 59.457 38.462 0.00 0.00 0.00 1.98
48 49 7.713942 TCTCGAAGTGTGCTATGTTACTATCTA 59.286 37.037 0.00 0.00 0.00 1.98
49 50 8.217131 TCGAAGTGTGCTATGTTACTATCTAA 57.783 34.615 0.00 0.00 0.00 2.10
50 51 8.343366 TCGAAGTGTGCTATGTTACTATCTAAG 58.657 37.037 0.00 0.00 0.00 2.18
51 52 8.129840 CGAAGTGTGCTATGTTACTATCTAAGT 58.870 37.037 0.00 0.00 42.62 2.24
52 53 9.804758 GAAGTGTGCTATGTTACTATCTAAGTT 57.195 33.333 0.00 0.00 39.80 2.66
57 58 9.896263 GTGCTATGTTACTATCTAAGTTACTCC 57.104 37.037 0.00 0.00 38.33 3.85
58 59 9.075678 TGCTATGTTACTATCTAAGTTACTCCC 57.924 37.037 0.00 0.00 38.33 4.30
59 60 9.075678 GCTATGTTACTATCTAAGTTACTCCCA 57.924 37.037 0.00 0.00 38.33 4.37
66 67 8.694581 ACTATCTAAGTTACTCCCACTATGAC 57.305 38.462 0.00 0.00 33.35 3.06
67 68 8.504409 ACTATCTAAGTTACTCCCACTATGACT 58.496 37.037 0.00 0.00 33.35 3.41
69 70 8.927675 ATCTAAGTTACTCCCACTATGACTAG 57.072 38.462 0.00 0.00 0.00 2.57
70 71 5.855740 AAGTTACTCCCACTATGACTAGC 57.144 43.478 0.00 0.00 0.00 3.42
71 72 4.216708 AGTTACTCCCACTATGACTAGCC 58.783 47.826 0.00 0.00 0.00 3.93
221 227 6.699575 AACAGCTCCTCGCATTAAAATTAT 57.300 33.333 0.00 0.00 42.61 1.28
233 239 7.011576 TCGCATTAAAATTATCGGCAGAGTTTA 59.988 33.333 0.00 0.00 0.00 2.01
350 356 0.250640 CTGCAGGACAAAGACAGCCT 60.251 55.000 5.57 0.00 0.00 4.58
382 388 4.009675 GGTGCACTCCTAACATCATTCAA 58.990 43.478 17.98 0.00 0.00 2.69
395 401 9.371136 CTAACATCATTCAAGCACTTTCTACTA 57.629 33.333 0.00 0.00 0.00 1.82
481 487 4.388577 AGCTCTGGGGATTTTGTTACTT 57.611 40.909 0.00 0.00 0.00 2.24
483 489 4.079253 GCTCTGGGGATTTTGTTACTTCA 58.921 43.478 0.00 0.00 0.00 3.02
604 610 8.614469 AGAGGATAGTGAACAAAGAAAAAGAG 57.386 34.615 0.00 0.00 0.00 2.85
732 738 2.028658 TCATCTGTGAAGGAGTGCACTC 60.029 50.000 34.25 34.25 42.14 3.51
757 763 2.234908 AGGGTGAGCGAATAGGATATGC 59.765 50.000 0.00 0.00 0.00 3.14
793 799 6.164176 CCAGTTTTGTTATCCTACTCGTCTT 58.836 40.000 0.00 0.00 0.00 3.01
909 915 4.141597 TGTGAATGGACTTACCTGTGAACA 60.142 41.667 0.00 0.00 39.86 3.18
970 976 3.677148 GCAGCTAGAGCAATAGACACACA 60.677 47.826 4.01 0.00 45.16 3.72
1191 1197 2.046892 AGCGGCATGTCACAGGTC 60.047 61.111 1.45 0.00 0.00 3.85
1335 1341 5.794945 CGCCACTGAAACTTGTTACATATTG 59.205 40.000 0.00 0.00 0.00 1.90
1432 1438 6.435591 TCATGCCCTCAATTTACAAATACACA 59.564 34.615 0.00 0.00 0.00 3.72
1433 1439 6.266168 TGCCCTCAATTTACAAATACACAG 57.734 37.500 0.00 0.00 0.00 3.66
1434 1440 6.007076 TGCCCTCAATTTACAAATACACAGA 58.993 36.000 0.00 0.00 0.00 3.41
1435 1441 6.663093 TGCCCTCAATTTACAAATACACAGAT 59.337 34.615 0.00 0.00 0.00 2.90
1436 1442 7.831690 TGCCCTCAATTTACAAATACACAGATA 59.168 33.333 0.00 0.00 0.00 1.98
1437 1443 8.850156 GCCCTCAATTTACAAATACACAGATAT 58.150 33.333 0.00 0.00 0.00 1.63
1448 1454 9.926158 ACAAATACACAGATATGAAATTTTGCA 57.074 25.926 0.00 0.00 0.00 4.08
1451 1457 9.793252 AATACACAGATATGAAATTTTGCAGAC 57.207 29.630 0.00 0.00 0.00 3.51
1452 1458 7.458409 ACACAGATATGAAATTTTGCAGACT 57.542 32.000 0.00 0.00 0.00 3.24
1453 1459 8.565896 ACACAGATATGAAATTTTGCAGACTA 57.434 30.769 0.00 0.00 0.00 2.59
1454 1460 9.013229 ACACAGATATGAAATTTTGCAGACTAA 57.987 29.630 0.00 0.00 0.00 2.24
1455 1461 9.499585 CACAGATATGAAATTTTGCAGACTAAG 57.500 33.333 0.00 0.00 0.00 2.18
1456 1462 8.680903 ACAGATATGAAATTTTGCAGACTAAGG 58.319 33.333 0.00 0.00 0.00 2.69
1457 1463 7.646922 CAGATATGAAATTTTGCAGACTAAGGC 59.353 37.037 0.00 0.00 0.00 4.35
1458 1464 5.726980 ATGAAATTTTGCAGACTAAGGCA 57.273 34.783 0.00 0.00 38.46 4.75
1459 1465 5.726980 TGAAATTTTGCAGACTAAGGCAT 57.273 34.783 0.00 0.00 40.17 4.40
1460 1466 6.832520 TGAAATTTTGCAGACTAAGGCATA 57.167 33.333 0.00 0.00 40.17 3.14
1461 1467 6.855836 TGAAATTTTGCAGACTAAGGCATAG 58.144 36.000 0.00 0.00 40.17 2.23
1462 1468 4.907879 ATTTTGCAGACTAAGGCATAGC 57.092 40.909 0.00 0.00 40.17 2.97
1473 1479 1.451936 GGCATAGCCTAGTGGTGGG 59.548 63.158 0.00 0.00 46.69 4.61
1474 1480 1.054406 GGCATAGCCTAGTGGTGGGA 61.054 60.000 0.00 0.00 46.69 4.37
1475 1481 0.837272 GCATAGCCTAGTGGTGGGAA 59.163 55.000 0.00 0.00 35.27 3.97
1476 1482 1.202698 GCATAGCCTAGTGGTGGGAAG 60.203 57.143 0.00 0.00 35.27 3.46
1477 1483 1.417890 CATAGCCTAGTGGTGGGAAGG 59.582 57.143 0.00 0.00 35.27 3.46
1478 1484 0.326238 TAGCCTAGTGGTGGGAAGGG 60.326 60.000 0.00 0.00 35.27 3.95
1479 1485 2.680370 GCCTAGTGGTGGGAAGGGG 61.680 68.421 0.00 0.00 35.27 4.79
1480 1486 2.680370 CCTAGTGGTGGGAAGGGGC 61.680 68.421 0.00 0.00 0.00 5.80
1481 1487 1.616628 CTAGTGGTGGGAAGGGGCT 60.617 63.158 0.00 0.00 0.00 5.19
1482 1488 1.915078 CTAGTGGTGGGAAGGGGCTG 61.915 65.000 0.00 0.00 0.00 4.85
1483 1489 2.409984 TAGTGGTGGGAAGGGGCTGA 62.410 60.000 0.00 0.00 0.00 4.26
1484 1490 2.204291 TGGTGGGAAGGGGCTGAT 60.204 61.111 0.00 0.00 0.00 2.90
1485 1491 2.276740 GGTGGGAAGGGGCTGATG 59.723 66.667 0.00 0.00 0.00 3.07
1486 1492 2.440980 GTGGGAAGGGGCTGATGC 60.441 66.667 0.00 0.00 38.76 3.91
1496 1502 2.440980 GCTGATGCCTTCCCACCC 60.441 66.667 0.00 0.00 0.00 4.61
1497 1503 3.089838 CTGATGCCTTCCCACCCA 58.910 61.111 0.00 0.00 0.00 4.51
1498 1504 1.379044 CTGATGCCTTCCCACCCAC 60.379 63.158 0.00 0.00 0.00 4.61
1499 1505 2.043953 GATGCCTTCCCACCCACC 60.044 66.667 0.00 0.00 0.00 4.61
1500 1506 3.662117 GATGCCTTCCCACCCACCC 62.662 68.421 0.00 0.00 0.00 4.61
1502 1508 4.366684 GCCTTCCCACCCACCCAG 62.367 72.222 0.00 0.00 0.00 4.45
1503 1509 3.661648 CCTTCCCACCCACCCAGG 61.662 72.222 0.00 0.00 37.03 4.45
1504 1510 2.858974 CTTCCCACCCACCCAGGT 60.859 66.667 0.00 0.00 42.40 4.00
1505 1511 2.370403 TTCCCACCCACCCAGGTT 60.370 61.111 0.00 0.00 38.39 3.50
1506 1512 2.426305 CTTCCCACCCACCCAGGTTC 62.426 65.000 0.00 0.00 38.39 3.62
1507 1513 3.182263 CCCACCCACCCAGGTTCA 61.182 66.667 0.00 0.00 38.39 3.18
1508 1514 2.773527 CCCACCCACCCAGGTTCAA 61.774 63.158 0.00 0.00 38.39 2.69
1509 1515 1.228552 CCACCCACCCAGGTTCAAG 60.229 63.158 0.00 0.00 38.39 3.02
1510 1516 1.228552 CACCCACCCAGGTTCAAGG 60.229 63.158 0.00 0.00 38.39 3.61
1511 1517 2.283173 CCCACCCAGGTTCAAGGC 60.283 66.667 0.00 0.00 34.66 4.35
1512 1518 2.283173 CCACCCAGGTTCAAGGCC 60.283 66.667 0.00 0.00 0.00 5.19
1513 1519 2.845345 CCACCCAGGTTCAAGGCCT 61.845 63.158 0.00 0.00 36.66 5.19
1519 1525 3.182105 AGGTTCAAGGCCTGGTACT 57.818 52.632 15.86 6.08 34.56 2.73
1520 1526 1.446016 AGGTTCAAGGCCTGGTACTT 58.554 50.000 15.86 6.28 34.56 2.24
1521 1527 1.073923 AGGTTCAAGGCCTGGTACTTG 59.926 52.381 15.86 20.25 44.09 3.16
1522 1528 0.881796 GTTCAAGGCCTGGTACTTGC 59.118 55.000 21.02 10.05 42.82 4.01
1523 1529 0.476338 TTCAAGGCCTGGTACTTGCA 59.524 50.000 21.02 12.56 42.82 4.08
1524 1530 0.476338 TCAAGGCCTGGTACTTGCAA 59.524 50.000 21.02 0.00 42.82 4.08
1525 1531 1.075374 TCAAGGCCTGGTACTTGCAAT 59.925 47.619 21.02 0.00 42.82 3.56
1526 1532 1.895131 CAAGGCCTGGTACTTGCAATT 59.105 47.619 5.69 0.00 37.82 2.32
1527 1533 2.299867 CAAGGCCTGGTACTTGCAATTT 59.700 45.455 5.69 0.00 37.82 1.82
1528 1534 1.895131 AGGCCTGGTACTTGCAATTTG 59.105 47.619 3.11 0.00 0.00 2.32
1529 1535 1.066929 GGCCTGGTACTTGCAATTTGG 60.067 52.381 0.00 0.00 0.00 3.28
1530 1536 1.066929 GCCTGGTACTTGCAATTTGGG 60.067 52.381 0.00 0.00 0.00 4.12
1531 1537 2.247358 CCTGGTACTTGCAATTTGGGT 58.753 47.619 0.00 0.00 0.00 4.51
1532 1538 2.632512 CCTGGTACTTGCAATTTGGGTT 59.367 45.455 0.00 0.00 0.00 4.11
1533 1539 3.070878 CCTGGTACTTGCAATTTGGGTTT 59.929 43.478 0.00 0.00 0.00 3.27
1534 1540 4.057432 CTGGTACTTGCAATTTGGGTTTG 58.943 43.478 0.00 0.00 0.00 2.93
1535 1541 3.452627 TGGTACTTGCAATTTGGGTTTGT 59.547 39.130 0.00 0.00 0.00 2.83
1536 1542 4.080863 TGGTACTTGCAATTTGGGTTTGTT 60.081 37.500 0.00 0.00 0.00 2.83
1537 1543 4.272261 GGTACTTGCAATTTGGGTTTGTTG 59.728 41.667 0.00 0.00 0.00 3.33
1538 1544 2.682352 ACTTGCAATTTGGGTTTGTTGC 59.318 40.909 0.00 2.25 45.27 4.17
1540 1546 2.753989 GCAATTTGGGTTTGTTGCAC 57.246 45.000 4.26 0.00 44.63 4.57
1541 1547 1.333308 GCAATTTGGGTTTGTTGCACC 59.667 47.619 4.26 0.00 44.63 5.01
1542 1548 2.636830 CAATTTGGGTTTGTTGCACCA 58.363 42.857 0.00 0.00 35.80 4.17
1543 1549 3.012518 CAATTTGGGTTTGTTGCACCAA 58.987 40.909 0.00 0.00 40.94 3.67
1544 1550 3.574354 ATTTGGGTTTGTTGCACCAAT 57.426 38.095 0.00 0.00 42.09 3.16
1545 1551 3.356529 TTTGGGTTTGTTGCACCAATT 57.643 38.095 0.00 0.00 42.09 2.32
1546 1552 4.487714 TTTGGGTTTGTTGCACCAATTA 57.512 36.364 0.00 0.00 42.09 1.40
1547 1553 4.696479 TTGGGTTTGTTGCACCAATTAT 57.304 36.364 0.00 0.00 38.02 1.28
1548 1554 5.808366 TTGGGTTTGTTGCACCAATTATA 57.192 34.783 0.00 0.00 38.02 0.98
1549 1555 5.140747 TGGGTTTGTTGCACCAATTATAC 57.859 39.130 0.00 0.00 35.80 1.47
1550 1556 4.835615 TGGGTTTGTTGCACCAATTATACT 59.164 37.500 0.00 0.00 35.80 2.12
1551 1557 5.167845 GGGTTTGTTGCACCAATTATACTG 58.832 41.667 0.00 0.00 35.80 2.74
1552 1558 5.279256 GGGTTTGTTGCACCAATTATACTGT 60.279 40.000 0.00 0.00 35.80 3.55
1553 1559 6.071840 GGGTTTGTTGCACCAATTATACTGTA 60.072 38.462 0.00 0.00 35.80 2.74
1554 1560 7.027161 GGTTTGTTGCACCAATTATACTGTAG 58.973 38.462 0.00 0.00 34.04 2.74
1555 1561 6.751514 TTGTTGCACCAATTATACTGTAGG 57.248 37.500 0.00 0.00 0.00 3.18
1556 1562 5.189928 TGTTGCACCAATTATACTGTAGGG 58.810 41.667 0.00 0.00 0.00 3.53
1557 1563 4.431416 TGCACCAATTATACTGTAGGGG 57.569 45.455 0.00 0.00 0.00 4.79
1558 1564 3.137544 TGCACCAATTATACTGTAGGGGG 59.862 47.826 0.00 0.00 0.00 5.40
1559 1565 3.137728 GCACCAATTATACTGTAGGGGGT 59.862 47.826 0.00 0.00 0.00 4.95
1560 1566 4.385977 GCACCAATTATACTGTAGGGGGTT 60.386 45.833 0.00 0.00 0.00 4.11
1561 1567 5.374071 CACCAATTATACTGTAGGGGGTTC 58.626 45.833 0.00 0.00 0.00 3.62
1562 1568 4.414514 ACCAATTATACTGTAGGGGGTTCC 59.585 45.833 0.00 0.00 0.00 3.62
1575 1581 3.069079 GGGGTTCCCTTACAGTCTTTC 57.931 52.381 7.87 0.00 41.34 2.62
1576 1582 2.643304 GGGGTTCCCTTACAGTCTTTCT 59.357 50.000 7.87 0.00 41.34 2.52
1577 1583 3.559384 GGGGTTCCCTTACAGTCTTTCTG 60.559 52.174 7.87 0.00 44.11 3.02
1579 1585 7.771544 GGGGTTCCCTTACAGTCTTTCTGTC 62.772 52.000 7.87 0.00 46.24 3.51
1616 1622 8.908903 ACAAATACACACATCCTGTTCTTTTAA 58.091 29.630 0.00 0.00 0.00 1.52
1970 1976 7.398829 ACTCCAAATATGTATGGTGTTGTACA 58.601 34.615 0.00 0.00 39.67 2.90
1983 1989 5.471797 TGGTGTTGTACATTGTCATACTTGG 59.528 40.000 0.00 0.00 0.00 3.61
2350 2356 3.201266 TGAAAGGTGGACAGGTAGTGTTT 59.799 43.478 0.00 0.00 40.56 2.83
2554 2560 4.378978 CCGAAAGCCAATAAACATGACGAA 60.379 41.667 0.00 0.00 0.00 3.85
2837 2844 2.027745 CGAGGGCCTAGCATCATACATT 60.028 50.000 5.73 0.00 0.00 2.71
3287 3294 5.284079 AGTGCTTCACAACAAATTGCTAAG 58.716 37.500 0.00 0.00 39.66 2.18
3346 3354 9.809096 TGTGTTCTAACTTGCAAATTTTCAATA 57.191 25.926 0.00 0.00 0.00 1.90
3492 3501 5.437060 ACTGGTGTTGTGTTAGAAGACATT 58.563 37.500 0.00 0.00 31.85 2.71
3562 3571 5.767168 AGGCCAGAGCAACTAATATTTGATC 59.233 40.000 5.01 1.12 42.56 2.92
3687 3696 0.250901 AGGCTGGCGAAGTGTTGATT 60.251 50.000 0.00 0.00 0.00 2.57
3917 3926 6.639632 AACACAATCTGTTCAACAATAGCT 57.360 33.333 0.00 0.00 38.94 3.32
3918 3927 6.639632 ACACAATCTGTTCAACAATAGCTT 57.360 33.333 0.00 0.00 0.00 3.74
3943 3952 5.764192 GGGCCCACGTATATAAACATAAACA 59.236 40.000 19.95 0.00 0.00 2.83
4258 4267 4.891756 CGAACAAGGTTAGTATCTCCCCTA 59.108 45.833 0.00 0.00 0.00 3.53
4374 4383 5.127194 ACGGAGCATACTCTCAACTTATTCA 59.873 40.000 0.00 0.00 42.98 2.57
4412 4421 3.364366 CCAAGAAACTTGCGAGCAGTTAG 60.364 47.826 0.00 4.16 0.00 2.34
4573 4582 2.012673 GATGGTGAGAAAGCAAGCGAT 58.987 47.619 0.00 0.00 40.33 4.58
4773 4782 3.851098 ACAAGCGACAGGAAGATTCTAC 58.149 45.455 0.00 0.00 0.00 2.59
5411 5422 4.993584 AGCTGATTAACAGTTGTCTCTGTG 59.006 41.667 0.00 0.00 46.25 3.66
5440 5451 4.923893 TGATGTCAACAGTGCTTTCTTTG 58.076 39.130 0.00 0.00 0.00 2.77
5444 5455 5.636837 TGTCAACAGTGCTTTCTTTGTTAC 58.363 37.500 0.00 0.00 32.86 2.50
5589 5600 1.581447 GCCTCTTTTTGTGCCGAGG 59.419 57.895 0.00 0.00 44.58 4.63
6097 6108 5.586243 CCGTCCAGATGTTCAAATATTCAGT 59.414 40.000 0.00 0.00 0.00 3.41
6135 6146 8.855804 AACATTCCCTCTAGAAAGGTCTTATA 57.144 34.615 8.06 0.00 35.12 0.98
6196 6216 5.416947 TCGAGAGGGTTCAATTTACTAAGC 58.583 41.667 0.00 0.00 0.00 3.09
6200 6220 7.215719 AGAGGGTTCAATTTACTAAGCAAAC 57.784 36.000 0.00 0.00 0.00 2.93
6202 6222 6.745116 AGGGTTCAATTTACTAAGCAAACAC 58.255 36.000 0.00 0.00 0.00 3.32
6223 6243 6.790319 ACACAATCCCAGGAATTTACTTAGT 58.210 36.000 0.00 0.00 0.00 2.24
6254 6274 1.369689 GCAGACTGTTGCGCTTGTG 60.370 57.895 9.73 0.00 33.90 3.33
6352 6372 6.914665 TCTTATTGGATGGAGTGGAAATCAT 58.085 36.000 0.00 0.00 28.43 2.45
6353 6373 7.000472 TCTTATTGGATGGAGTGGAAATCATC 59.000 38.462 0.00 0.00 36.29 2.92
6365 6385 6.721318 AGTGGAAATCATCAACCTAAAGCTA 58.279 36.000 0.00 0.00 31.69 3.32
6443 6463 2.935849 CACAATACGAGCCAACATAGCA 59.064 45.455 0.00 0.00 0.00 3.49
6446 6466 4.750098 ACAATACGAGCCAACATAGCATAC 59.250 41.667 0.00 0.00 0.00 2.39
6449 6469 1.538204 CGAGCCAACATAGCATACGGT 60.538 52.381 0.00 0.00 0.00 4.83
6656 6676 1.471684 CTTCTGGATGAGGCAACAAGC 59.528 52.381 0.00 0.00 44.65 4.01
6716 6736 4.166011 GACCGCGTGATGCTTGGC 62.166 66.667 4.92 0.00 43.27 4.52
6758 6778 1.218047 CCGCCTCTCAACGATCCAA 59.782 57.895 0.00 0.00 0.00 3.53
6788 6808 7.174599 GCTGATATAATTGCAGTTCTGAAGGAT 59.825 37.037 0.00 0.00 32.39 3.24
6812 6832 2.151202 GCAATCGTGGAGAAAGGAACA 58.849 47.619 0.00 0.00 0.00 3.18
6887 6907 2.621055 TCGCCCCAATGCAACATAATAC 59.379 45.455 0.00 0.00 0.00 1.89
6888 6908 2.360483 CGCCCCAATGCAACATAATACA 59.640 45.455 0.00 0.00 0.00 2.29
6895 6915 7.267128 CCCAATGCAACATAATACAGTGATTT 58.733 34.615 0.00 0.00 30.09 2.17
6897 6917 7.223193 CCAATGCAACATAATACAGTGATTTGG 59.777 37.037 0.00 0.00 30.09 3.28
6898 6918 6.206395 TGCAACATAATACAGTGATTTGGG 57.794 37.500 0.00 0.00 0.00 4.12
6899 6919 5.043248 GCAACATAATACAGTGATTTGGGC 58.957 41.667 0.00 0.00 0.00 5.36
6901 6921 6.629128 CAACATAATACAGTGATTTGGGCAA 58.371 36.000 0.00 0.00 0.00 4.52
6902 6922 7.267128 CAACATAATACAGTGATTTGGGCAAT 58.733 34.615 0.00 0.00 0.00 3.56
6903 6923 6.808829 ACATAATACAGTGATTTGGGCAATG 58.191 36.000 0.00 0.00 37.36 2.82
6906 6926 0.458889 CAGTGATTTGGGCAATGGCG 60.459 55.000 0.00 0.00 42.47 5.69
6938 6958 9.676861 TTGAGCTACTGAATTGTACTAGTACTA 57.323 33.333 28.56 23.25 37.00 1.82
7023 7043 9.836739 GCGTCTTATCGAAATATATAAGAATGC 57.163 33.333 5.68 8.78 43.04 3.56
7043 7064 2.731572 CTCCATGGGTGAAGATTTGCT 58.268 47.619 13.02 0.00 0.00 3.91
7053 7074 2.288579 TGAAGATTTGCTGCAGCCAAAG 60.289 45.455 34.64 0.00 41.18 2.77
7062 7083 2.115266 CAGCCAAAGGGGGAACGT 59.885 61.111 0.00 0.00 37.04 3.99
7067 7088 0.251165 CCAAAGGGGGAACGTGACAT 60.251 55.000 0.00 0.00 0.00 3.06
7080 7101 2.224670 ACGTGACATTTTCCAAGGCCTA 60.225 45.455 5.16 0.00 0.00 3.93
7085 7106 1.401905 CATTTTCCAAGGCCTAGCGTC 59.598 52.381 5.16 0.00 0.00 5.19
7105 7126 5.512082 GCGTCCTGTATAAATCTAGCATACG 59.488 44.000 0.00 0.00 0.00 3.06
7133 7154 4.117685 CCTAAGGTCGTATGTTTGCTACC 58.882 47.826 0.00 0.00 0.00 3.18
7146 7167 3.398318 TTGCTACCCTCCAGATCAGTA 57.602 47.619 0.00 0.00 0.00 2.74
7148 7169 1.964933 GCTACCCTCCAGATCAGTACC 59.035 57.143 0.00 0.00 0.00 3.34
7150 7171 3.181431 GCTACCCTCCAGATCAGTACCTA 60.181 52.174 0.00 0.00 0.00 3.08
7162 7183 5.598830 AGATCAGTACCTACATCAAACCGAT 59.401 40.000 0.00 0.00 33.27 4.18
7163 7184 6.776116 AGATCAGTACCTACATCAAACCGATA 59.224 38.462 0.00 0.00 31.20 2.92
7165 7186 7.356089 TCAGTACCTACATCAAACCGATAAT 57.644 36.000 0.00 0.00 31.20 1.28
7166 7187 7.431249 TCAGTACCTACATCAAACCGATAATC 58.569 38.462 0.00 0.00 31.20 1.75
7168 7189 5.623956 ACCTACATCAAACCGATAATCCA 57.376 39.130 0.00 0.00 31.20 3.41
7169 7190 6.187727 ACCTACATCAAACCGATAATCCAT 57.812 37.500 0.00 0.00 31.20 3.41
7170 7191 5.997746 ACCTACATCAAACCGATAATCCATG 59.002 40.000 0.00 0.00 31.20 3.66
7171 7192 5.412594 CCTACATCAAACCGATAATCCATGG 59.587 44.000 4.97 4.97 31.20 3.66
7172 7193 4.144297 ACATCAAACCGATAATCCATGGG 58.856 43.478 13.02 0.00 38.45 4.00
7173 7194 4.141274 ACATCAAACCGATAATCCATGGGA 60.141 41.667 13.02 0.00 36.08 4.37
7231 7260 1.141858 GCCAAGGGTATTCTCAGGAGG 59.858 57.143 0.00 0.00 0.00 4.30
7259 7288 0.250513 GGTACCTTGTGAGGAGGCTG 59.749 60.000 4.06 0.00 46.74 4.85
7261 7290 1.553690 TACCTTGTGAGGAGGCTGCC 61.554 60.000 11.65 11.65 46.74 4.85
7301 7330 2.202362 CGTCGACGCTGAGACAGG 60.202 66.667 26.59 0.00 37.23 4.00
7303 7332 1.135731 GTCGACGCTGAGACAGGAG 59.864 63.158 0.00 0.00 37.34 3.69
7304 7333 2.041115 TCGACGCTGAGACAGGAGG 61.041 63.158 0.00 0.00 31.21 4.30
7305 7334 2.183046 GACGCTGAGACAGGAGGC 59.817 66.667 0.00 0.00 31.21 4.70
7306 7335 2.601666 ACGCTGAGACAGGAGGCA 60.602 61.111 0.00 0.00 31.21 4.75
7307 7336 2.159819 GACGCTGAGACAGGAGGCAA 62.160 60.000 0.00 0.00 31.21 4.52
7309 7338 1.372683 GCTGAGACAGGAGGCAACA 59.627 57.895 0.00 0.00 32.53 3.33
7310 7339 0.673022 GCTGAGACAGGAGGCAACAG 60.673 60.000 0.00 0.00 32.53 3.16
7311 7340 0.036577 CTGAGACAGGAGGCAACAGG 60.037 60.000 0.00 0.00 41.41 4.00
7312 7341 1.376553 GAGACAGGAGGCAACAGGC 60.377 63.158 0.00 0.00 43.74 4.85
7344 7374 1.424493 CCGAACGAATCTGCTCTGCC 61.424 60.000 0.00 0.00 0.00 4.85
7346 7376 0.458543 GAACGAATCTGCTCTGCCGA 60.459 55.000 0.00 0.00 0.00 5.54
7347 7377 0.176680 AACGAATCTGCTCTGCCGAT 59.823 50.000 0.00 0.00 34.16 4.18
7359 7389 2.202987 GCCGATGAGCCAGACTGG 60.203 66.667 17.83 17.83 41.55 4.00
7551 7581 0.104409 AGGGGAGGGATATTCGGCTT 60.104 55.000 0.00 0.00 0.00 4.35
7663 7695 2.560105 GAGCCCTGCAAGAGTCATTTTT 59.440 45.455 0.00 0.00 34.07 1.94
7664 7696 2.298163 AGCCCTGCAAGAGTCATTTTTG 59.702 45.455 0.00 0.00 34.07 2.44
7665 7697 2.611224 GCCCTGCAAGAGTCATTTTTGG 60.611 50.000 0.00 0.00 34.07 3.28
7666 7698 2.629617 CCCTGCAAGAGTCATTTTTGGT 59.370 45.455 0.00 0.00 34.07 3.67
7667 7699 3.826157 CCCTGCAAGAGTCATTTTTGGTA 59.174 43.478 0.00 0.00 34.07 3.25
7668 7700 4.082571 CCCTGCAAGAGTCATTTTTGGTAG 60.083 45.833 0.00 0.00 34.07 3.18
7669 7701 4.082571 CCTGCAAGAGTCATTTTTGGTAGG 60.083 45.833 0.00 0.00 34.07 3.18
7670 7702 4.469657 TGCAAGAGTCATTTTTGGTAGGT 58.530 39.130 0.00 0.00 0.00 3.08
7671 7703 4.892934 TGCAAGAGTCATTTTTGGTAGGTT 59.107 37.500 0.00 0.00 0.00 3.50
7672 7704 5.221224 TGCAAGAGTCATTTTTGGTAGGTTG 60.221 40.000 0.00 0.00 0.00 3.77
7673 7705 5.221244 GCAAGAGTCATTTTTGGTAGGTTGT 60.221 40.000 0.00 0.00 0.00 3.32
7674 7706 6.016610 GCAAGAGTCATTTTTGGTAGGTTGTA 60.017 38.462 0.00 0.00 0.00 2.41
7675 7707 7.309194 GCAAGAGTCATTTTTGGTAGGTTGTAT 60.309 37.037 0.00 0.00 0.00 2.29
7676 7708 7.687941 AGAGTCATTTTTGGTAGGTTGTATG 57.312 36.000 0.00 0.00 0.00 2.39
7677 7709 7.231467 AGAGTCATTTTTGGTAGGTTGTATGT 58.769 34.615 0.00 0.00 0.00 2.29
7678 7710 8.380099 AGAGTCATTTTTGGTAGGTTGTATGTA 58.620 33.333 0.00 0.00 0.00 2.29
7679 7711 9.174166 GAGTCATTTTTGGTAGGTTGTATGTAT 57.826 33.333 0.00 0.00 0.00 2.29
7680 7712 9.528489 AGTCATTTTTGGTAGGTTGTATGTATT 57.472 29.630 0.00 0.00 0.00 1.89
7709 7741 3.395858 TTACTCGACTAGTAAGCGTGC 57.604 47.619 0.00 0.00 44.11 5.34
7710 7742 1.162698 ACTCGACTAGTAAGCGTGCA 58.837 50.000 0.00 0.00 36.36 4.57
7711 7743 1.135746 ACTCGACTAGTAAGCGTGCAC 60.136 52.381 6.82 6.82 36.36 4.57
7712 7744 0.179207 TCGACTAGTAAGCGTGCACG 60.179 55.000 34.01 34.01 43.27 5.34
7713 7745 0.453950 CGACTAGTAAGCGTGCACGT 60.454 55.000 36.80 22.79 42.22 4.49
7714 7746 0.982673 GACTAGTAAGCGTGCACGTG 59.017 55.000 36.80 20.50 42.22 4.49
7715 7747 1.007336 ACTAGTAAGCGTGCACGTGC 61.007 55.000 36.80 33.11 42.22 5.34
7740 7772 4.868450 GCACGTATTGCCTAATGTTACA 57.132 40.909 0.00 0.00 46.63 2.41
7741 7773 5.224562 GCACGTATTGCCTAATGTTACAA 57.775 39.130 0.00 0.00 46.63 2.41
7742 7774 5.816919 GCACGTATTGCCTAATGTTACAAT 58.183 37.500 0.00 0.00 46.63 2.71
7743 7775 6.950545 GCACGTATTGCCTAATGTTACAATA 58.049 36.000 0.00 0.00 46.63 1.90
7744 7776 7.411274 GCACGTATTGCCTAATGTTACAATAA 58.589 34.615 0.00 0.00 46.63 1.40
7745 7777 8.073768 GCACGTATTGCCTAATGTTACAATAAT 58.926 33.333 0.00 0.00 46.63 1.28
7768 7800 5.728637 ATGTGAAAGTTCATTTTCCTCCC 57.271 39.130 0.00 0.00 39.73 4.30
7769 7801 4.541705 TGTGAAAGTTCATTTTCCTCCCA 58.458 39.130 0.00 0.00 39.73 4.37
7770 7802 4.959210 TGTGAAAGTTCATTTTCCTCCCAA 59.041 37.500 0.00 0.00 39.73 4.12
7771 7803 5.602145 TGTGAAAGTTCATTTTCCTCCCAAT 59.398 36.000 0.00 0.00 39.73 3.16
7772 7804 6.159293 GTGAAAGTTCATTTTCCTCCCAATC 58.841 40.000 0.00 0.00 39.73 2.67
7773 7805 5.837979 TGAAAGTTCATTTTCCTCCCAATCA 59.162 36.000 0.00 0.00 36.46 2.57
7774 7806 6.326064 TGAAAGTTCATTTTCCTCCCAATCAA 59.674 34.615 0.00 0.00 36.46 2.57
7775 7807 5.990120 AGTTCATTTTCCTCCCAATCAAG 57.010 39.130 0.00 0.00 0.00 3.02
7776 7808 4.221482 AGTTCATTTTCCTCCCAATCAAGC 59.779 41.667 0.00 0.00 0.00 4.01
7777 7809 4.051661 TCATTTTCCTCCCAATCAAGCT 57.948 40.909 0.00 0.00 0.00 3.74
7778 7810 5.191727 TCATTTTCCTCCCAATCAAGCTA 57.808 39.130 0.00 0.00 0.00 3.32
7779 7811 4.949856 TCATTTTCCTCCCAATCAAGCTAC 59.050 41.667 0.00 0.00 0.00 3.58
7780 7812 4.657814 TTTTCCTCCCAATCAAGCTACT 57.342 40.909 0.00 0.00 0.00 2.57
7781 7813 5.772393 TTTTCCTCCCAATCAAGCTACTA 57.228 39.130 0.00 0.00 0.00 1.82
7782 7814 4.755266 TTCCTCCCAATCAAGCTACTAC 57.245 45.455 0.00 0.00 0.00 2.73
7783 7815 3.719871 TCCTCCCAATCAAGCTACTACA 58.280 45.455 0.00 0.00 0.00 2.74
7784 7816 4.298626 TCCTCCCAATCAAGCTACTACAT 58.701 43.478 0.00 0.00 0.00 2.29
7785 7817 4.721776 TCCTCCCAATCAAGCTACTACATT 59.278 41.667 0.00 0.00 0.00 2.71
7786 7818 5.059833 CCTCCCAATCAAGCTACTACATTC 58.940 45.833 0.00 0.00 0.00 2.67
7787 7819 5.396772 CCTCCCAATCAAGCTACTACATTCA 60.397 44.000 0.00 0.00 0.00 2.57
7788 7820 5.428253 TCCCAATCAAGCTACTACATTCAC 58.572 41.667 0.00 0.00 0.00 3.18
7789 7821 5.045942 TCCCAATCAAGCTACTACATTCACA 60.046 40.000 0.00 0.00 0.00 3.58
7790 7822 5.824624 CCCAATCAAGCTACTACATTCACAT 59.175 40.000 0.00 0.00 0.00 3.21
7791 7823 6.319658 CCCAATCAAGCTACTACATTCACATT 59.680 38.462 0.00 0.00 0.00 2.71
7792 7824 7.148018 CCCAATCAAGCTACTACATTCACATTT 60.148 37.037 0.00 0.00 0.00 2.32
7793 7825 8.246180 CCAATCAAGCTACTACATTCACATTTT 58.754 33.333 0.00 0.00 0.00 1.82
7796 7828 9.890629 ATCAAGCTACTACATTCACATTTTAGA 57.109 29.630 0.00 0.00 0.00 2.10
7797 7829 9.151471 TCAAGCTACTACATTCACATTTTAGAC 57.849 33.333 0.00 0.00 0.00 2.59
7798 7830 9.155975 CAAGCTACTACATTCACATTTTAGACT 57.844 33.333 0.00 0.00 0.00 3.24
7828 7860 9.892130 AGTACCCTTCTTATTCTACAAATCTTG 57.108 33.333 0.00 0.00 0.00 3.02
7829 7861 9.886132 GTACCCTTCTTATTCTACAAATCTTGA 57.114 33.333 0.00 0.00 0.00 3.02
7831 7863 9.981460 ACCCTTCTTATTCTACAAATCTTGAAT 57.019 29.630 0.00 0.00 34.16 2.57
7852 7884 9.661563 TTGAATAACATATTCAAGTACTCGGTT 57.338 29.630 17.26 0.00 41.46 4.44
7858 7890 8.644318 ACATATTCAAGTACTCGGTTACAATC 57.356 34.615 0.00 0.00 0.00 2.67
7859 7891 8.255206 ACATATTCAAGTACTCGGTTACAATCA 58.745 33.333 0.00 0.00 0.00 2.57
7860 7892 9.261180 CATATTCAAGTACTCGGTTACAATCAT 57.739 33.333 0.00 0.00 0.00 2.45
7861 7893 9.832445 ATATTCAAGTACTCGGTTACAATCATT 57.168 29.630 0.00 0.00 0.00 2.57
7863 7895 9.832445 ATTCAAGTACTCGGTTACAATCATTAT 57.168 29.630 0.00 0.00 0.00 1.28
7864 7896 9.661563 TTCAAGTACTCGGTTACAATCATTATT 57.338 29.630 0.00 0.00 0.00 1.40
7865 7897 9.661563 TCAAGTACTCGGTTACAATCATTATTT 57.338 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.232692 AGAAATTTTTGCTTATGTGGCATGT 58.767 32.000 0.00 0.00 39.54 3.21
1 2 6.454583 CGAGAAATTTTTGCTTATGTGGCATG 60.455 38.462 0.00 0.00 39.54 4.06
2 3 5.577945 CGAGAAATTTTTGCTTATGTGGCAT 59.422 36.000 0.00 0.00 39.54 4.40
3 4 4.922692 CGAGAAATTTTTGCTTATGTGGCA 59.077 37.500 0.00 0.00 37.97 4.92
4 5 5.160641 TCGAGAAATTTTTGCTTATGTGGC 58.839 37.500 0.00 0.00 0.00 5.01
5 6 6.863126 ACTTCGAGAAATTTTTGCTTATGTGG 59.137 34.615 0.00 0.00 0.00 4.17
6 7 7.379529 ACACTTCGAGAAATTTTTGCTTATGTG 59.620 33.333 0.00 0.00 0.00 3.21
7 8 7.379529 CACACTTCGAGAAATTTTTGCTTATGT 59.620 33.333 0.00 0.00 0.00 2.29
8 9 7.617935 GCACACTTCGAGAAATTTTTGCTTATG 60.618 37.037 0.00 0.00 0.00 1.90
9 10 6.363357 GCACACTTCGAGAAATTTTTGCTTAT 59.637 34.615 0.00 0.00 0.00 1.73
10 11 5.685511 GCACACTTCGAGAAATTTTTGCTTA 59.314 36.000 0.00 0.00 0.00 3.09
11 12 4.504097 GCACACTTCGAGAAATTTTTGCTT 59.496 37.500 0.00 0.00 0.00 3.91
12 13 4.044426 GCACACTTCGAGAAATTTTTGCT 58.956 39.130 0.00 0.00 0.00 3.91
13 14 4.044426 AGCACACTTCGAGAAATTTTTGC 58.956 39.130 0.00 0.00 0.00 3.68
14 15 6.857964 ACATAGCACACTTCGAGAAATTTTTG 59.142 34.615 0.00 0.00 0.00 2.44
15 16 6.970484 ACATAGCACACTTCGAGAAATTTTT 58.030 32.000 0.00 0.00 0.00 1.94
16 17 6.560253 ACATAGCACACTTCGAGAAATTTT 57.440 33.333 0.00 0.00 0.00 1.82
17 18 6.560253 AACATAGCACACTTCGAGAAATTT 57.440 33.333 0.00 0.00 0.00 1.82
18 19 6.874134 AGTAACATAGCACACTTCGAGAAATT 59.126 34.615 0.00 0.00 0.00 1.82
19 20 6.398918 AGTAACATAGCACACTTCGAGAAAT 58.601 36.000 0.00 0.00 0.00 2.17
20 21 5.779922 AGTAACATAGCACACTTCGAGAAA 58.220 37.500 0.00 0.00 0.00 2.52
21 22 5.386958 AGTAACATAGCACACTTCGAGAA 57.613 39.130 0.00 0.00 0.00 2.87
22 23 6.542735 AGATAGTAACATAGCACACTTCGAGA 59.457 38.462 0.00 0.00 0.00 4.04
23 24 6.730175 AGATAGTAACATAGCACACTTCGAG 58.270 40.000 0.00 0.00 0.00 4.04
24 25 6.694877 AGATAGTAACATAGCACACTTCGA 57.305 37.500 0.00 0.00 0.00 3.71
25 26 8.129840 ACTTAGATAGTAACATAGCACACTTCG 58.870 37.037 0.00 0.00 34.56 3.79
26 27 9.804758 AACTTAGATAGTAACATAGCACACTTC 57.195 33.333 0.00 0.00 35.54 3.01
31 32 9.896263 GGAGTAACTTAGATAGTAACATAGCAC 57.104 37.037 0.00 0.00 35.54 4.40
32 33 9.075678 GGGAGTAACTTAGATAGTAACATAGCA 57.924 37.037 0.00 0.00 35.54 3.49
33 34 9.075678 TGGGAGTAACTTAGATAGTAACATAGC 57.924 37.037 0.00 0.00 35.54 2.97
40 41 9.790344 GTCATAGTGGGAGTAACTTAGATAGTA 57.210 37.037 0.00 0.00 35.54 1.82
41 42 8.504409 AGTCATAGTGGGAGTAACTTAGATAGT 58.496 37.037 0.00 0.00 39.32 2.12
42 43 8.927675 AGTCATAGTGGGAGTAACTTAGATAG 57.072 38.462 0.00 0.00 0.00 2.08
44 45 7.449086 GCTAGTCATAGTGGGAGTAACTTAGAT 59.551 40.741 0.00 0.00 0.00 1.98
45 46 6.771749 GCTAGTCATAGTGGGAGTAACTTAGA 59.228 42.308 0.00 0.00 0.00 2.10
46 47 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
47 48 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
48 49 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
49 50 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
50 51 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
51 52 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
52 53 4.537945 AAGGCTAGTCATAGTGGGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
53 54 3.406512 AAGGCTAGTCATAGTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
54 55 3.829601 CCTAAGGCTAGTCATAGTGGGAG 59.170 52.174 5.92 0.00 0.00 4.30
55 56 3.465966 TCCTAAGGCTAGTCATAGTGGGA 59.534 47.826 5.92 0.00 0.00 4.37
56 57 3.845860 TCCTAAGGCTAGTCATAGTGGG 58.154 50.000 5.92 0.00 0.00 4.61
57 58 5.871396 TTTCCTAAGGCTAGTCATAGTGG 57.129 43.478 5.92 0.00 0.00 4.00
58 59 7.500992 TCATTTTCCTAAGGCTAGTCATAGTG 58.499 38.462 5.92 0.00 0.00 2.74
59 60 7.676683 TCATTTTCCTAAGGCTAGTCATAGT 57.323 36.000 5.92 0.00 0.00 2.12
60 61 8.370940 TGATCATTTTCCTAAGGCTAGTCATAG 58.629 37.037 0.00 0.00 0.00 2.23
61 62 8.262601 TGATCATTTTCCTAAGGCTAGTCATA 57.737 34.615 0.00 0.00 0.00 2.15
62 63 7.141758 TGATCATTTTCCTAAGGCTAGTCAT 57.858 36.000 0.00 0.00 0.00 3.06
63 64 6.560003 TGATCATTTTCCTAAGGCTAGTCA 57.440 37.500 0.00 0.00 0.00 3.41
64 65 5.468409 GCTGATCATTTTCCTAAGGCTAGTC 59.532 44.000 0.00 0.00 0.00 2.59
65 66 5.104360 TGCTGATCATTTTCCTAAGGCTAGT 60.104 40.000 0.00 0.00 0.00 2.57
66 67 5.371526 TGCTGATCATTTTCCTAAGGCTAG 58.628 41.667 0.00 0.00 0.00 3.42
67 68 5.372343 TGCTGATCATTTTCCTAAGGCTA 57.628 39.130 0.00 0.00 0.00 3.93
68 69 4.240881 TGCTGATCATTTTCCTAAGGCT 57.759 40.909 0.00 0.00 0.00 4.58
69 70 4.158394 TGTTGCTGATCATTTTCCTAAGGC 59.842 41.667 0.00 0.00 0.00 4.35
70 71 5.902613 TGTTGCTGATCATTTTCCTAAGG 57.097 39.130 0.00 0.00 0.00 2.69
71 72 8.592105 TTTTTGTTGCTGATCATTTTCCTAAG 57.408 30.769 0.00 0.00 0.00 2.18
98 99 4.554292 CGTCAGCTCAGATGTAAGCATAT 58.446 43.478 0.00 0.00 41.06 1.78
221 227 1.481871 CTAGGGGTAAACTCTGCCGA 58.518 55.000 0.00 0.00 0.00 5.54
350 356 6.544650 TGTTAGGAGTGCACCCTTAATTAAA 58.455 36.000 25.68 13.76 35.30 1.52
382 388 4.021016 CCAGAACCACTAGTAGAAAGTGCT 60.021 45.833 3.59 0.00 42.47 4.40
395 401 1.680338 GTTTCAGTGCCAGAACCACT 58.320 50.000 0.00 0.00 43.92 4.00
401 407 0.389817 CGATCGGTTTCAGTGCCAGA 60.390 55.000 7.38 0.00 0.00 3.86
415 421 8.007716 GTGGTGAAATAATTTATGTACCGATCG 58.992 37.037 8.51 8.51 0.00 3.69
604 610 2.550180 GCTGTTTGAAGGAACCTGTCTC 59.450 50.000 0.00 0.00 0.00 3.36
732 738 0.249489 CCTATTCGCTCACCCTTCGG 60.249 60.000 0.00 0.00 0.00 4.30
757 763 1.035139 AAAACTGGCCACAAGAGCTG 58.965 50.000 0.00 0.00 0.00 4.24
793 799 0.037590 AAGGTGCGATGCCAACCTAA 59.962 50.000 1.74 0.00 0.00 2.69
909 915 8.629158 TGCTTTTATAGTGTCATTGTCTTGTTT 58.371 29.630 0.00 0.00 0.00 2.83
970 976 1.831736 ACCAGGTAATTGACTAGCGCT 59.168 47.619 17.26 17.26 0.00 5.92
1191 1197 2.047040 CCGAAGATGATCGACATGACG 58.953 52.381 11.41 11.41 45.48 4.35
1335 1341 4.333926 CCTGTAAGCAAGTTCTTATCAGCC 59.666 45.833 0.00 0.00 32.58 4.85
1432 1438 7.340232 TGCCTTAGTCTGCAAAATTTCATATCT 59.660 33.333 0.00 0.00 33.87 1.98
1433 1439 7.483307 TGCCTTAGTCTGCAAAATTTCATATC 58.517 34.615 0.00 0.00 33.87 1.63
1434 1440 7.408756 TGCCTTAGTCTGCAAAATTTCATAT 57.591 32.000 0.00 0.00 33.87 1.78
1435 1441 6.832520 TGCCTTAGTCTGCAAAATTTCATA 57.167 33.333 0.00 0.00 33.87 2.15
1436 1442 5.726980 TGCCTTAGTCTGCAAAATTTCAT 57.273 34.783 0.00 0.00 33.87 2.57
1437 1443 5.726980 ATGCCTTAGTCTGCAAAATTTCA 57.273 34.783 0.00 0.00 41.50 2.69
1438 1444 5.745769 GCTATGCCTTAGTCTGCAAAATTTC 59.254 40.000 0.00 0.00 41.50 2.17
1439 1445 5.394553 GGCTATGCCTTAGTCTGCAAAATTT 60.395 40.000 0.73 0.00 46.69 1.82
1440 1446 4.098501 GGCTATGCCTTAGTCTGCAAAATT 59.901 41.667 0.73 0.00 46.69 1.82
1441 1447 3.633986 GGCTATGCCTTAGTCTGCAAAAT 59.366 43.478 0.73 0.00 46.69 1.82
1442 1448 3.016736 GGCTATGCCTTAGTCTGCAAAA 58.983 45.455 0.73 0.00 46.69 2.44
1443 1449 2.643551 GGCTATGCCTTAGTCTGCAAA 58.356 47.619 0.73 0.00 46.69 3.68
1444 1450 2.332063 GGCTATGCCTTAGTCTGCAA 57.668 50.000 0.73 0.00 46.69 4.08
1456 1462 0.837272 TTCCCACCACTAGGCTATGC 59.163 55.000 0.00 0.00 39.06 3.14
1457 1463 1.417890 CCTTCCCACCACTAGGCTATG 59.582 57.143 0.00 0.00 39.06 2.23
1458 1464 1.695989 CCCTTCCCACCACTAGGCTAT 60.696 57.143 0.00 0.00 39.06 2.97
1459 1465 0.326238 CCCTTCCCACCACTAGGCTA 60.326 60.000 0.00 0.00 39.06 3.93
1460 1466 1.616628 CCCTTCCCACCACTAGGCT 60.617 63.158 0.00 0.00 39.06 4.58
1461 1467 2.680370 CCCCTTCCCACCACTAGGC 61.680 68.421 0.00 0.00 39.06 3.93
1462 1468 2.680370 GCCCCTTCCCACCACTAGG 61.680 68.421 0.00 0.00 42.21 3.02
1463 1469 1.616628 AGCCCCTTCCCACCACTAG 60.617 63.158 0.00 0.00 0.00 2.57
1464 1470 1.923395 CAGCCCCTTCCCACCACTA 60.923 63.158 0.00 0.00 0.00 2.74
1465 1471 3.260100 CAGCCCCTTCCCACCACT 61.260 66.667 0.00 0.00 0.00 4.00
1466 1472 2.616458 ATCAGCCCCTTCCCACCAC 61.616 63.158 0.00 0.00 0.00 4.16
1467 1473 2.204291 ATCAGCCCCTTCCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
1468 1474 2.276740 CATCAGCCCCTTCCCACC 59.723 66.667 0.00 0.00 0.00 4.61
1469 1475 2.440980 GCATCAGCCCCTTCCCAC 60.441 66.667 0.00 0.00 33.58 4.61
1479 1485 2.440980 GGGTGGGAAGGCATCAGC 60.441 66.667 0.00 0.00 41.10 4.26
1480 1486 1.379044 GTGGGTGGGAAGGCATCAG 60.379 63.158 0.00 0.00 0.00 2.90
1481 1487 2.763215 GTGGGTGGGAAGGCATCA 59.237 61.111 0.00 0.00 0.00 3.07
1482 1488 2.043953 GGTGGGTGGGAAGGCATC 60.044 66.667 0.00 0.00 0.00 3.91
1483 1489 3.672503 GGGTGGGTGGGAAGGCAT 61.673 66.667 0.00 0.00 0.00 4.40
1485 1491 4.366684 CTGGGTGGGTGGGAAGGC 62.367 72.222 0.00 0.00 0.00 4.35
1486 1492 3.661648 CCTGGGTGGGTGGGAAGG 61.662 72.222 0.00 0.00 0.00 3.46
1487 1493 2.426305 GAACCTGGGTGGGTGGGAAG 62.426 65.000 0.00 0.00 39.85 3.46
1488 1494 2.370403 AACCTGGGTGGGTGGGAA 60.370 61.111 0.00 0.00 39.85 3.97
1489 1495 2.856988 GAACCTGGGTGGGTGGGA 60.857 66.667 0.00 0.00 39.85 4.37
1490 1496 2.713531 CTTGAACCTGGGTGGGTGGG 62.714 65.000 0.00 0.00 39.85 4.61
1491 1497 1.228552 CTTGAACCTGGGTGGGTGG 60.229 63.158 0.00 0.00 39.85 4.61
1492 1498 1.228552 CCTTGAACCTGGGTGGGTG 60.229 63.158 0.00 0.00 39.85 4.61
1493 1499 3.146828 GCCTTGAACCTGGGTGGGT 62.147 63.158 0.00 0.00 42.05 4.51
1494 1500 2.283173 GCCTTGAACCTGGGTGGG 60.283 66.667 0.00 0.00 41.11 4.61
1495 1501 2.283173 GGCCTTGAACCTGGGTGG 60.283 66.667 0.00 0.00 42.93 4.61
1496 1502 2.846532 AGGCCTTGAACCTGGGTG 59.153 61.111 0.00 0.00 35.72 4.61
1501 1507 1.073923 CAAGTACCAGGCCTTGAACCT 59.926 52.381 11.55 0.00 40.36 3.50
1502 1508 1.534729 CAAGTACCAGGCCTTGAACC 58.465 55.000 11.55 0.00 40.36 3.62
1503 1509 0.881796 GCAAGTACCAGGCCTTGAAC 59.118 55.000 19.28 5.41 40.36 3.18
1504 1510 0.476338 TGCAAGTACCAGGCCTTGAA 59.524 50.000 19.28 9.27 40.36 2.69
1505 1511 0.476338 TTGCAAGTACCAGGCCTTGA 59.524 50.000 19.28 0.00 40.36 3.02
1506 1512 1.549203 ATTGCAAGTACCAGGCCTTG 58.451 50.000 0.00 0.68 40.77 3.61
1507 1513 2.299867 CAAATTGCAAGTACCAGGCCTT 59.700 45.455 0.00 0.00 0.00 4.35
1508 1514 1.895131 CAAATTGCAAGTACCAGGCCT 59.105 47.619 0.00 0.00 0.00 5.19
1509 1515 1.066929 CCAAATTGCAAGTACCAGGCC 60.067 52.381 4.94 0.00 0.00 5.19
1510 1516 1.066929 CCCAAATTGCAAGTACCAGGC 60.067 52.381 4.94 0.00 0.00 4.85
1511 1517 2.247358 ACCCAAATTGCAAGTACCAGG 58.753 47.619 4.94 4.17 0.00 4.45
1512 1518 4.057432 CAAACCCAAATTGCAAGTACCAG 58.943 43.478 4.94 0.00 0.00 4.00
1513 1519 3.452627 ACAAACCCAAATTGCAAGTACCA 59.547 39.130 4.94 0.00 0.00 3.25
1514 1520 4.066646 ACAAACCCAAATTGCAAGTACC 57.933 40.909 4.94 0.00 0.00 3.34
1515 1521 4.260579 GCAACAAACCCAAATTGCAAGTAC 60.261 41.667 4.94 0.00 45.38 2.73
1516 1522 3.873952 GCAACAAACCCAAATTGCAAGTA 59.126 39.130 4.94 0.00 45.38 2.24
1517 1523 2.682352 GCAACAAACCCAAATTGCAAGT 59.318 40.909 4.94 0.00 45.38 3.16
1518 1524 3.337301 GCAACAAACCCAAATTGCAAG 57.663 42.857 4.94 0.00 45.38 4.01
1521 1527 1.333308 GGTGCAACAAACCCAAATTGC 59.667 47.619 0.00 0.94 46.08 3.56
1522 1528 2.636830 TGGTGCAACAAACCCAAATTG 58.363 42.857 0.00 0.00 39.98 2.32
1523 1529 3.356529 TTGGTGCAACAAACCCAAATT 57.643 38.095 16.46 0.00 39.98 1.82
1524 1530 3.574354 ATTGGTGCAACAAACCCAAAT 57.426 38.095 23.14 0.00 40.16 2.32
1525 1531 3.356529 AATTGGTGCAACAAACCCAAA 57.643 38.095 23.14 0.00 40.16 3.28
1526 1532 4.696479 ATAATTGGTGCAACAAACCCAA 57.304 36.364 23.14 14.03 39.98 4.12
1527 1533 4.835615 AGTATAATTGGTGCAACAAACCCA 59.164 37.500 23.14 3.95 39.98 4.51
1528 1534 5.167845 CAGTATAATTGGTGCAACAAACCC 58.832 41.667 23.14 7.99 39.98 4.11
1529 1535 5.778862 ACAGTATAATTGGTGCAACAAACC 58.221 37.500 23.14 7.62 39.98 3.27
1530 1536 7.027161 CCTACAGTATAATTGGTGCAACAAAC 58.973 38.462 23.14 15.04 39.98 2.93
1531 1537 6.151985 CCCTACAGTATAATTGGTGCAACAAA 59.848 38.462 23.14 6.25 39.98 2.83
1532 1538 5.650266 CCCTACAGTATAATTGGTGCAACAA 59.350 40.000 21.46 21.46 39.98 2.83
1533 1539 5.189928 CCCTACAGTATAATTGGTGCAACA 58.810 41.667 0.00 0.00 39.98 3.33
1534 1540 4.578928 CCCCTACAGTATAATTGGTGCAAC 59.421 45.833 0.00 0.00 0.00 4.17
1535 1541 4.385865 CCCCCTACAGTATAATTGGTGCAA 60.386 45.833 0.00 0.00 0.00 4.08
1536 1542 3.137544 CCCCCTACAGTATAATTGGTGCA 59.862 47.826 0.00 0.00 0.00 4.57
1537 1543 3.137728 ACCCCCTACAGTATAATTGGTGC 59.862 47.826 0.00 0.00 0.00 5.01
1538 1544 5.374071 GAACCCCCTACAGTATAATTGGTG 58.626 45.833 0.00 0.00 0.00 4.17
1539 1545 4.414514 GGAACCCCCTACAGTATAATTGGT 59.585 45.833 0.00 0.00 0.00 3.67
1540 1546 4.981812 GGAACCCCCTACAGTATAATTGG 58.018 47.826 0.00 0.00 0.00 3.16
1554 1560 6.627612 CAGAAAGACTGTAAGGGAACCCCC 62.628 54.167 6.23 0.00 45.84 5.40
1555 1561 3.559384 CAGAAAGACTGTAAGGGAACCCC 60.559 52.174 6.23 0.00 45.84 4.95
1556 1562 3.676093 CAGAAAGACTGTAAGGGAACCC 58.324 50.000 0.94 0.94 45.84 4.11
1656 1662 8.772250 TCTAGAACCACCTGAAAGAAATATGAT 58.228 33.333 0.00 0.00 34.07 2.45
1765 1771 0.033601 ATAATGGGAAAGGCCACGCA 60.034 50.000 5.01 11.13 38.95 5.24
1961 1967 6.203915 TGACCAAGTATGACAATGTACAACAC 59.796 38.462 0.00 0.00 0.00 3.32
1970 1976 4.002906 ACACGTGACCAAGTATGACAAT 57.997 40.909 25.01 0.00 0.00 2.71
1983 1989 8.744008 ACTCATATGCTATATTTACACGTGAC 57.256 34.615 25.01 0.35 0.00 3.67
2350 2356 3.701205 ATTGTGTCAGCAGATGTACCA 57.299 42.857 0.00 0.00 0.00 3.25
2837 2844 7.280876 GTCTGTTCTACAATATTTCCTGCATCA 59.719 37.037 0.00 0.00 0.00 3.07
3346 3354 3.099141 CACCCAATGCTCTAACCCAAAT 58.901 45.455 0.00 0.00 0.00 2.32
3492 3501 3.706594 CCCTCAGCTCTACATCACCTTTA 59.293 47.826 0.00 0.00 0.00 1.85
3562 3571 5.108518 CGCTTGATACATGCATTGAAAATCG 60.109 40.000 0.00 0.00 34.78 3.34
3687 3696 7.528996 AAAACTCTTGATGTTCATTCCATCA 57.471 32.000 0.00 0.00 45.14 3.07
3917 3926 3.928005 TGTTTATATACGTGGGCCCAA 57.072 42.857 30.64 12.75 0.00 4.12
3918 3927 5.563876 TTATGTTTATATACGTGGGCCCA 57.436 39.130 24.45 24.45 0.00 5.36
4258 4267 5.855045 ACAGAACCAAAGTAAAGATCGAGT 58.145 37.500 0.00 0.00 0.00 4.18
4374 4383 2.965831 TCTTGGTGTGTCTCTTGTAGCT 59.034 45.455 0.00 0.00 0.00 3.32
4412 4421 2.867624 TGGGCTTGATAATCCAGCATC 58.132 47.619 4.97 0.00 0.00 3.91
4489 4498 3.053693 TGACAGGGGGAATTACAGAATGG 60.054 47.826 0.00 0.00 43.62 3.16
4573 4582 5.042463 TGGAAACCTTGACATCTGTGTTA 57.958 39.130 0.00 0.00 39.09 2.41
4773 4782 1.341080 ACACAGCAATCCCCAAAAGG 58.659 50.000 0.00 0.00 0.00 3.11
5410 5421 4.081476 AGCACTGTTGACATCATAGTAGCA 60.081 41.667 15.21 0.00 0.00 3.49
5411 5422 4.437239 AGCACTGTTGACATCATAGTAGC 58.563 43.478 0.00 6.26 0.00 3.58
5440 5451 7.123830 GTCACCAATATAGCAATGTTCGTAAC 58.876 38.462 0.00 0.00 0.00 2.50
5444 5455 5.294306 AGTGTCACCAATATAGCAATGTTCG 59.706 40.000 0.00 0.00 0.00 3.95
5589 5600 6.650807 TGATTGTATTTTGTCACCACTCTCTC 59.349 38.462 0.00 0.00 0.00 3.20
6097 6108 3.138283 AGGGAATGTTCAAGGTGAAGTCA 59.862 43.478 0.00 0.00 37.00 3.41
6196 6216 6.345096 AGTAAATTCCTGGGATTGTGTTTG 57.655 37.500 0.00 0.00 0.00 2.93
6200 6220 8.674607 GTTACTAAGTAAATTCCTGGGATTGTG 58.325 37.037 0.00 0.00 29.42 3.33
6202 6222 8.801882 TGTTACTAAGTAAATTCCTGGGATTG 57.198 34.615 0.00 0.00 29.42 2.67
6223 6243 5.339177 CAACAGTCTGCAACAAACATGTTA 58.661 37.500 12.39 0.00 0.00 2.41
6254 6274 3.365265 CCGCTGCCACTTTGACCC 61.365 66.667 0.00 0.00 0.00 4.46
6443 6463 5.452917 GGTTACCTCTTCATGCTTACCGTAT 60.453 44.000 0.00 0.00 0.00 3.06
6446 6466 3.195661 GGTTACCTCTTCATGCTTACCG 58.804 50.000 0.00 0.00 0.00 4.02
6449 6469 3.132289 CCTCGGTTACCTCTTCATGCTTA 59.868 47.826 0.00 0.00 0.00 3.09
6512 6532 3.072211 CTGTGGCATGCTCGATATGAAT 58.928 45.455 18.92 0.00 0.00 2.57
6599 6619 3.067742 CCTTCAGAATAGCCCTTGCAATG 59.932 47.826 0.00 0.00 41.13 2.82
6656 6676 1.195347 CTGACTCTGCATCTAACGCG 58.805 55.000 3.53 3.53 0.00 6.01
6749 6769 1.507140 TATCAGCCCCTTGGATCGTT 58.493 50.000 0.00 0.00 0.00 3.85
6758 6778 4.105377 AGAACTGCAATTATATCAGCCCCT 59.895 41.667 0.00 0.00 0.00 4.79
6788 6808 1.298157 CTTTCTCCACGATTGCGCCA 61.298 55.000 4.18 0.00 42.48 5.69
6842 6862 2.242926 TCTAGAAGCGAGGCATATGCT 58.757 47.619 26.12 12.92 41.60 3.79
6851 6871 1.551145 GGCGAAGTTCTAGAAGCGAG 58.449 55.000 20.22 9.15 0.00 5.03
6887 6907 0.458889 CGCCATTGCCCAAATCACTG 60.459 55.000 0.00 0.00 0.00 3.66
6888 6908 0.899717 ACGCCATTGCCCAAATCACT 60.900 50.000 0.00 0.00 0.00 3.41
6895 6915 1.677300 AAATCGACGCCATTGCCCA 60.677 52.632 0.00 0.00 0.00 5.36
6897 6917 0.248215 CTCAAATCGACGCCATTGCC 60.248 55.000 0.00 0.00 0.00 4.52
6898 6918 0.863119 GCTCAAATCGACGCCATTGC 60.863 55.000 0.00 0.00 0.00 3.56
6899 6919 0.729116 AGCTCAAATCGACGCCATTG 59.271 50.000 0.00 0.00 0.00 2.82
6901 6921 1.137086 AGTAGCTCAAATCGACGCCAT 59.863 47.619 0.00 0.00 0.00 4.40
6902 6922 0.530744 AGTAGCTCAAATCGACGCCA 59.469 50.000 0.00 0.00 0.00 5.69
6903 6923 0.924090 CAGTAGCTCAAATCGACGCC 59.076 55.000 0.00 0.00 0.00 5.68
6906 6926 5.786401 ACAATTCAGTAGCTCAAATCGAC 57.214 39.130 0.00 0.00 0.00 4.20
6938 6958 3.170717 TGCCTAAGCCAACTGTACTACT 58.829 45.455 0.00 0.00 38.69 2.57
7021 7041 2.449464 CAAATCTTCACCCATGGAGCA 58.551 47.619 15.22 0.00 30.42 4.26
7022 7042 1.135721 GCAAATCTTCACCCATGGAGC 59.864 52.381 15.22 0.00 30.42 4.70
7023 7043 2.426024 CAGCAAATCTTCACCCATGGAG 59.574 50.000 15.22 5.95 31.81 3.86
7043 7064 2.203625 GTTCCCCCTTTGGCTGCA 60.204 61.111 0.50 0.00 0.00 4.41
7053 7074 0.885879 GGAAAATGTCACGTTCCCCC 59.114 55.000 5.40 0.00 35.72 5.40
7062 7083 2.446435 GCTAGGCCTTGGAAAATGTCA 58.554 47.619 12.58 0.00 0.00 3.58
7067 7088 0.322187 GGACGCTAGGCCTTGGAAAA 60.322 55.000 12.58 0.00 44.23 2.29
7080 7101 5.730296 ATGCTAGATTTATACAGGACGCT 57.270 39.130 0.00 0.00 0.00 5.07
7085 7106 6.688578 ACACCGTATGCTAGATTTATACAGG 58.311 40.000 0.00 5.43 32.44 4.00
7105 7126 4.725790 AACATACGACCTTAGGTACACC 57.274 45.455 2.88 0.00 35.25 4.16
7133 7154 4.474394 TGATGTAGGTACTGATCTGGAGG 58.526 47.826 4.49 0.00 41.52 4.30
7146 7167 5.623956 TGGATTATCGGTTTGATGTAGGT 57.376 39.130 0.00 0.00 37.99 3.08
7148 7169 5.412594 CCCATGGATTATCGGTTTGATGTAG 59.587 44.000 15.22 0.00 37.99 2.74
7150 7171 4.141274 TCCCATGGATTATCGGTTTGATGT 60.141 41.667 15.22 0.00 37.99 3.06
7224 7253 2.038545 TACCCACCACCACCTCCTGA 62.039 60.000 0.00 0.00 0.00 3.86
7301 7330 2.912624 GCTGTGTGCCTGTTGCCTC 61.913 63.158 0.00 0.00 40.16 4.70
7311 7340 1.965930 TTCGGTGATGGCTGTGTGC 60.966 57.895 0.00 0.00 41.94 4.57
7312 7341 1.868997 GTTCGGTGATGGCTGTGTG 59.131 57.895 0.00 0.00 0.00 3.82
7313 7342 1.667830 CGTTCGGTGATGGCTGTGT 60.668 57.895 0.00 0.00 0.00 3.72
7314 7343 0.948623 TTCGTTCGGTGATGGCTGTG 60.949 55.000 0.00 0.00 0.00 3.66
7315 7344 0.036388 ATTCGTTCGGTGATGGCTGT 60.036 50.000 0.00 0.00 0.00 4.40
7344 7374 1.153489 CACCCAGTCTGGCTCATCG 60.153 63.158 13.99 1.10 35.79 3.84
7346 7376 2.673523 GCACCCAGTCTGGCTCAT 59.326 61.111 13.99 0.00 35.79 2.90
7347 7377 4.007644 CGCACCCAGTCTGGCTCA 62.008 66.667 13.99 0.00 35.79 4.26
7551 7581 2.042537 AGCCCATCCTCTCTCGCA 60.043 61.111 0.00 0.00 0.00 5.10
7689 7721 2.743664 TGCACGCTTACTAGTCGAGTAA 59.256 45.455 9.21 5.57 46.36 2.24
7690 7722 2.094894 GTGCACGCTTACTAGTCGAGTA 59.905 50.000 0.00 0.00 39.81 2.59
7691 7723 1.135746 GTGCACGCTTACTAGTCGAGT 60.136 52.381 0.00 0.00 42.69 4.18
7692 7724 1.536149 GTGCACGCTTACTAGTCGAG 58.464 55.000 0.00 5.76 0.00 4.04
7693 7725 0.179207 CGTGCACGCTTACTAGTCGA 60.179 55.000 28.16 0.00 0.00 4.20
7694 7726 0.453950 ACGTGCACGCTTACTAGTCG 60.454 55.000 37.35 11.30 44.43 4.18
7695 7727 0.982673 CACGTGCACGCTTACTAGTC 59.017 55.000 37.35 0.00 44.43 2.59
7696 7728 1.007336 GCACGTGCACGCTTACTAGT 61.007 55.000 37.35 14.16 44.43 2.57
7697 7729 1.702299 GCACGTGCACGCTTACTAG 59.298 57.895 37.35 19.04 44.43 2.57
7698 7730 3.850923 GCACGTGCACGCTTACTA 58.149 55.556 37.35 0.00 44.43 1.82
7742 7774 8.966868 GGGAGGAAAATGAACTTTCACATATTA 58.033 33.333 0.00 0.00 40.49 0.98
7743 7775 7.454380 TGGGAGGAAAATGAACTTTCACATATT 59.546 33.333 0.00 0.00 40.49 1.28
7744 7776 6.953520 TGGGAGGAAAATGAACTTTCACATAT 59.046 34.615 0.00 0.00 40.49 1.78
7745 7777 6.310941 TGGGAGGAAAATGAACTTTCACATA 58.689 36.000 0.00 0.00 40.49 2.29
7746 7778 5.147032 TGGGAGGAAAATGAACTTTCACAT 58.853 37.500 0.00 0.00 40.49 3.21
7747 7779 4.541705 TGGGAGGAAAATGAACTTTCACA 58.458 39.130 0.00 0.00 40.49 3.58
7748 7780 5.529581 TTGGGAGGAAAATGAACTTTCAC 57.470 39.130 0.00 0.00 40.49 3.18
7749 7781 5.837979 TGATTGGGAGGAAAATGAACTTTCA 59.162 36.000 0.00 0.00 42.14 2.69
7750 7782 6.345096 TGATTGGGAGGAAAATGAACTTTC 57.655 37.500 0.00 0.00 35.04 2.62
7751 7783 6.742363 GCTTGATTGGGAGGAAAATGAACTTT 60.742 38.462 0.00 0.00 0.00 2.66
7752 7784 5.279657 GCTTGATTGGGAGGAAAATGAACTT 60.280 40.000 0.00 0.00 0.00 2.66
7753 7785 4.221482 GCTTGATTGGGAGGAAAATGAACT 59.779 41.667 0.00 0.00 0.00 3.01
7754 7786 4.221482 AGCTTGATTGGGAGGAAAATGAAC 59.779 41.667 0.00 0.00 0.00 3.18
7755 7787 4.419282 AGCTTGATTGGGAGGAAAATGAA 58.581 39.130 0.00 0.00 0.00 2.57
7756 7788 4.051661 AGCTTGATTGGGAGGAAAATGA 57.948 40.909 0.00 0.00 0.00 2.57
7757 7789 4.952335 AGTAGCTTGATTGGGAGGAAAATG 59.048 41.667 0.00 0.00 0.00 2.32
7758 7790 5.198602 AGTAGCTTGATTGGGAGGAAAAT 57.801 39.130 0.00 0.00 0.00 1.82
7759 7791 4.657814 AGTAGCTTGATTGGGAGGAAAA 57.342 40.909 0.00 0.00 0.00 2.29
7760 7792 4.534500 TGTAGTAGCTTGATTGGGAGGAAA 59.466 41.667 0.00 0.00 0.00 3.13
7761 7793 4.101114 TGTAGTAGCTTGATTGGGAGGAA 58.899 43.478 0.00 0.00 0.00 3.36
7762 7794 3.719871 TGTAGTAGCTTGATTGGGAGGA 58.280 45.455 0.00 0.00 0.00 3.71
7763 7795 4.696479 ATGTAGTAGCTTGATTGGGAGG 57.304 45.455 0.00 0.00 0.00 4.30
7764 7796 5.525378 GTGAATGTAGTAGCTTGATTGGGAG 59.475 44.000 0.00 0.00 0.00 4.30
7765 7797 5.045942 TGTGAATGTAGTAGCTTGATTGGGA 60.046 40.000 0.00 0.00 0.00 4.37
7766 7798 5.185454 TGTGAATGTAGTAGCTTGATTGGG 58.815 41.667 0.00 0.00 0.00 4.12
7767 7799 6.932356 ATGTGAATGTAGTAGCTTGATTGG 57.068 37.500 0.00 0.00 0.00 3.16
7770 7802 9.890629 TCTAAAATGTGAATGTAGTAGCTTGAT 57.109 29.630 0.00 0.00 0.00 2.57
7771 7803 9.151471 GTCTAAAATGTGAATGTAGTAGCTTGA 57.849 33.333 0.00 0.00 0.00 3.02
7772 7804 9.155975 AGTCTAAAATGTGAATGTAGTAGCTTG 57.844 33.333 0.00 0.00 0.00 4.01
7802 7834 9.892130 CAAGATTTGTAGAATAAGAAGGGTACT 57.108 33.333 0.00 0.00 0.00 2.73
7803 7835 9.886132 TCAAGATTTGTAGAATAAGAAGGGTAC 57.114 33.333 0.00 0.00 0.00 3.34
7805 7837 9.981460 ATTCAAGATTTGTAGAATAAGAAGGGT 57.019 29.630 0.00 0.00 0.00 4.34
7826 7858 9.661563 AACCGAGTACTTGAATATGTTATTCAA 57.338 29.630 12.02 17.28 43.34 2.69
7832 7864 9.095065 GATTGTAACCGAGTACTTGAATATGTT 57.905 33.333 12.02 8.92 0.00 2.71
7833 7865 8.255206 TGATTGTAACCGAGTACTTGAATATGT 58.745 33.333 12.02 0.00 0.00 2.29
7834 7866 8.642908 TGATTGTAACCGAGTACTTGAATATG 57.357 34.615 12.02 0.00 0.00 1.78
7835 7867 9.832445 AATGATTGTAACCGAGTACTTGAATAT 57.168 29.630 12.02 0.00 0.00 1.28
7837 7869 9.832445 ATAATGATTGTAACCGAGTACTTGAAT 57.168 29.630 12.02 2.88 0.00 2.57
7838 7870 9.661563 AATAATGATTGTAACCGAGTACTTGAA 57.338 29.630 12.02 0.00 0.00 2.69
7839 7871 9.661563 AAATAATGATTGTAACCGAGTACTTGA 57.338 29.630 12.02 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.