Multiple sequence alignment - TraesCS1A01G367100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G367100 chr1A 100.000 3329 0 0 1 3329 545779292 545775964 0.000000e+00 6148.0
1 TraesCS1A01G367100 chr1A 82.875 1419 178 35 613 2015 545764308 545762939 0.000000e+00 1214.0
2 TraesCS1A01G367100 chr1A 84.946 279 22 9 2400 2667 545849783 545849514 7.080000e-67 265.0
3 TraesCS1A01G367100 chr1A 86.170 94 8 2 712 800 545856424 545856331 2.730000e-16 97.1
4 TraesCS1A01G367100 chr1B 86.894 2228 206 41 613 2822 618908413 618906254 0.000000e+00 2418.0
5 TraesCS1A01G367100 chr1B 83.228 1419 184 32 613 2023 618699281 618697909 0.000000e+00 1253.0
6 TraesCS1A01G367100 chr1B 83.418 1381 173 28 711 2065 619095860 619094510 0.000000e+00 1230.0
7 TraesCS1A01G367100 chr1B 82.085 1429 178 44 613 2008 618542620 618544003 0.000000e+00 1149.0
8 TraesCS1A01G367100 chr1B 86.176 1020 126 11 991 2004 618196959 618197969 0.000000e+00 1088.0
9 TraesCS1A01G367100 chr1B 88.591 149 10 4 2841 2988 618707962 618707820 1.230000e-39 174.0
10 TraesCS1A01G367100 chr1D 84.585 2290 203 64 609 2822 451044340 451042125 0.000000e+00 2135.0
11 TraesCS1A01G367100 chr1D 84.067 1500 186 34 655 2132 450578872 450580340 0.000000e+00 1397.0
12 TraesCS1A01G367100 chr1D 82.434 1446 183 43 707 2122 450738961 450740365 0.000000e+00 1197.0
13 TraesCS1A01G367100 chr1D 82.575 1406 192 31 613 2005 450757990 450756625 0.000000e+00 1190.0
14 TraesCS1A01G367100 chr1D 86.837 1056 112 14 953 1990 451063176 451062130 0.000000e+00 1155.0
15 TraesCS1A01G367100 chr1D 83.257 1314 158 32 712 2019 451035958 451034701 0.000000e+00 1151.0
16 TraesCS1A01G367100 chr1D 87.500 592 63 4 4 586 137644796 137645385 0.000000e+00 673.0
17 TraesCS1A01G367100 chr6B 88.047 594 62 2 1 586 560790190 560790782 0.000000e+00 695.0
18 TraesCS1A01G367100 chr2B 86.891 595 69 2 1 587 571239657 571240250 0.000000e+00 658.0
19 TraesCS1A01G367100 chr2B 86.610 590 70 2 5 586 626105911 626105323 0.000000e+00 643.0
20 TraesCS1A01G367100 chr7B 87.179 585 65 3 11 586 110879748 110879165 0.000000e+00 656.0
21 TraesCS1A01G367100 chr7B 86.949 590 65 3 5 586 742289192 742289777 0.000000e+00 652.0
22 TraesCS1A01G367100 chr7B 86.441 590 71 2 5 586 40184684 40185272 3.620000e-179 638.0
23 TraesCS1A01G367100 chr7A 86.964 583 68 1 12 586 219166794 219167376 0.000000e+00 649.0
24 TraesCS1A01G367100 chrUn 86.532 594 71 2 1 586 346714903 346714311 0.000000e+00 645.0
25 TraesCS1A01G367100 chr5B 84.364 582 67 10 11 586 690539793 690539230 1.750000e-152 549.0
26 TraesCS1A01G367100 chr4D 87.393 468 50 2 1 460 80086335 80086801 2.270000e-146 529.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G367100 chr1A 545775964 545779292 3328 True 6148 6148 100.000 1 3329 1 chr1A.!!$R2 3328
1 TraesCS1A01G367100 chr1A 545762939 545764308 1369 True 1214 1214 82.875 613 2015 1 chr1A.!!$R1 1402
2 TraesCS1A01G367100 chr1B 618906254 618908413 2159 True 2418 2418 86.894 613 2822 1 chr1B.!!$R3 2209
3 TraesCS1A01G367100 chr1B 618697909 618699281 1372 True 1253 1253 83.228 613 2023 1 chr1B.!!$R1 1410
4 TraesCS1A01G367100 chr1B 619094510 619095860 1350 True 1230 1230 83.418 711 2065 1 chr1B.!!$R4 1354
5 TraesCS1A01G367100 chr1B 618542620 618544003 1383 False 1149 1149 82.085 613 2008 1 chr1B.!!$F2 1395
6 TraesCS1A01G367100 chr1B 618196959 618197969 1010 False 1088 1088 86.176 991 2004 1 chr1B.!!$F1 1013
7 TraesCS1A01G367100 chr1D 451042125 451044340 2215 True 2135 2135 84.585 609 2822 1 chr1D.!!$R3 2213
8 TraesCS1A01G367100 chr1D 450578872 450580340 1468 False 1397 1397 84.067 655 2132 1 chr1D.!!$F2 1477
9 TraesCS1A01G367100 chr1D 450738961 450740365 1404 False 1197 1197 82.434 707 2122 1 chr1D.!!$F3 1415
10 TraesCS1A01G367100 chr1D 450756625 450757990 1365 True 1190 1190 82.575 613 2005 1 chr1D.!!$R1 1392
11 TraesCS1A01G367100 chr1D 451062130 451063176 1046 True 1155 1155 86.837 953 1990 1 chr1D.!!$R4 1037
12 TraesCS1A01G367100 chr1D 451034701 451035958 1257 True 1151 1151 83.257 712 2019 1 chr1D.!!$R2 1307
13 TraesCS1A01G367100 chr1D 137644796 137645385 589 False 673 673 87.500 4 586 1 chr1D.!!$F1 582
14 TraesCS1A01G367100 chr6B 560790190 560790782 592 False 695 695 88.047 1 586 1 chr6B.!!$F1 585
15 TraesCS1A01G367100 chr2B 571239657 571240250 593 False 658 658 86.891 1 587 1 chr2B.!!$F1 586
16 TraesCS1A01G367100 chr2B 626105323 626105911 588 True 643 643 86.610 5 586 1 chr2B.!!$R1 581
17 TraesCS1A01G367100 chr7B 110879165 110879748 583 True 656 656 87.179 11 586 1 chr7B.!!$R1 575
18 TraesCS1A01G367100 chr7B 742289192 742289777 585 False 652 652 86.949 5 586 1 chr7B.!!$F2 581
19 TraesCS1A01G367100 chr7B 40184684 40185272 588 False 638 638 86.441 5 586 1 chr7B.!!$F1 581
20 TraesCS1A01G367100 chr7A 219166794 219167376 582 False 649 649 86.964 12 586 1 chr7A.!!$F1 574
21 TraesCS1A01G367100 chrUn 346714311 346714903 592 True 645 645 86.532 1 586 1 chrUn.!!$R1 585
22 TraesCS1A01G367100 chr5B 690539230 690539793 563 True 549 549 84.364 11 586 1 chr5B.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1105 0.034477 AAACCACCACATCCCGATCC 60.034 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 2679 0.031043 TCTTTCCGCGTCAACTCGAA 59.969 50.0 4.92 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.006859 ACATGTCATCGAACTCCAGAACA 59.993 43.478 0.00 0.00 0.00 3.18
92 102 3.505386 TCAACCATAAACCCAGCACAAT 58.495 40.909 0.00 0.00 0.00 2.71
158 168 4.117685 GTGTACTCCTGAACGACAAAACT 58.882 43.478 0.00 0.00 0.00 2.66
170 180 1.882623 GACAAAACTTCCCTGCTCCAG 59.117 52.381 0.00 0.00 0.00 3.86
211 221 3.001902 TAGCAACGGGGACAGAGCG 62.002 63.158 0.00 0.00 0.00 5.03
213 223 4.760047 CAACGGGGACAGAGCGGG 62.760 72.222 0.00 0.00 0.00 6.13
222 232 0.467290 GACAGAGCGGGAGGAGAGAT 60.467 60.000 0.00 0.00 0.00 2.75
223 233 0.754957 ACAGAGCGGGAGGAGAGATG 60.755 60.000 0.00 0.00 0.00 2.90
227 237 2.430610 GCGGGAGGAGAGATGCACT 61.431 63.158 0.00 0.00 0.00 4.40
235 245 2.170187 AGGAGAGATGCACTTGATGGAC 59.830 50.000 0.00 0.00 0.00 4.02
246 256 4.148825 GATGGACTCACCGCCGCT 62.149 66.667 0.00 0.00 42.61 5.52
262 275 4.680237 CTGCCTCGCCGACACCAA 62.680 66.667 0.00 0.00 0.00 3.67
280 293 2.551287 CCAACCATGAACCCTAACGTCA 60.551 50.000 0.00 0.00 0.00 4.35
294 307 0.526662 ACGTCACCGATCTGAAGGAC 59.473 55.000 9.14 0.00 37.88 3.85
306 319 0.179004 TGAAGGACCGGCAAACACAT 60.179 50.000 0.00 0.00 0.00 3.21
320 333 4.931002 GCAAACACATGATGCCATTAACTT 59.069 37.500 0.00 0.00 34.03 2.66
338 351 0.176910 TTTGAGACGCCGCCATGATA 59.823 50.000 0.00 0.00 0.00 2.15
369 382 4.520874 CCAGTGTGAGAGTAGAGTTGAGAA 59.479 45.833 0.00 0.00 0.00 2.87
383 396 9.575783 GTAGAGTTGAGAAAGATTTATTCGTCT 57.424 33.333 0.00 0.00 32.04 4.18
403 416 4.178169 ACGCCGTTTCCACCACCA 62.178 61.111 0.00 0.00 0.00 4.17
460 473 1.819288 CTACAGAGCAGAGAAACGGGA 59.181 52.381 0.00 0.00 0.00 5.14
463 477 1.480137 CAGAGCAGAGAAACGGGATCT 59.520 52.381 0.00 0.00 0.00 2.75
520 537 1.613630 AGAGGGCCAACGTCCTGAT 60.614 57.895 6.18 0.00 34.56 2.90
522 539 1.899437 GAGGGCCAACGTCCTGATCA 61.899 60.000 6.18 0.00 32.74 2.92
587 604 4.096003 GCGGTGGCTAGGGCAGAA 62.096 66.667 0.00 0.00 39.19 3.02
588 605 2.125106 CGGTGGCTAGGGCAGAAC 60.125 66.667 0.00 0.00 39.19 3.01
589 606 2.272471 GGTGGCTAGGGCAGAACC 59.728 66.667 0.00 0.00 39.19 3.62
590 607 2.602676 GGTGGCTAGGGCAGAACCA 61.603 63.158 0.00 0.00 42.05 3.67
591 608 1.078143 GTGGCTAGGGCAGAACCAG 60.078 63.158 0.00 0.00 42.05 4.00
592 609 2.124529 GGCTAGGGCAGAACCAGC 60.125 66.667 0.00 0.00 42.05 4.85
598 615 3.706373 GGCAGAACCAGCCCGAGA 61.706 66.667 0.00 0.00 46.50 4.04
599 616 2.586792 GCAGAACCAGCCCGAGAT 59.413 61.111 0.00 0.00 0.00 2.75
600 617 1.078143 GCAGAACCAGCCCGAGATT 60.078 57.895 0.00 0.00 0.00 2.40
601 618 1.372087 GCAGAACCAGCCCGAGATTG 61.372 60.000 0.00 0.00 0.00 2.67
602 619 0.745845 CAGAACCAGCCCGAGATTGG 60.746 60.000 0.00 0.00 37.98 3.16
603 620 1.201429 AGAACCAGCCCGAGATTGGT 61.201 55.000 0.00 0.00 46.78 3.67
604 621 3.495729 ACCAGCCCGAGATTGGTT 58.504 55.556 0.00 0.00 42.36 3.67
605 622 1.767692 ACCAGCCCGAGATTGGTTT 59.232 52.632 0.00 0.00 42.36 3.27
606 623 0.112412 ACCAGCCCGAGATTGGTTTT 59.888 50.000 0.00 0.00 42.36 2.43
607 624 1.256812 CCAGCCCGAGATTGGTTTTT 58.743 50.000 0.00 0.00 0.00 1.94
611 628 0.109319 CCCGAGATTGGTTTTTGGCG 60.109 55.000 0.00 0.00 0.00 5.69
644 661 1.820519 ACGCGTGTGGTAAGAATAGGA 59.179 47.619 12.93 0.00 0.00 2.94
653 670 3.827302 TGGTAAGAATAGGAGGATCGCTC 59.173 47.826 3.35 3.35 34.37 5.03
665 682 0.174389 GATCGCTCAGCTTGGTCAGA 59.826 55.000 0.00 0.00 0.00 3.27
771 809 1.079405 CCACGCCTTTTCGCCTCTA 60.079 57.895 0.00 0.00 0.00 2.43
778 816 3.536570 GCCTTTTCGCCTCTAGATTTCT 58.463 45.455 0.00 0.00 0.00 2.52
786 833 3.892588 CGCCTCTAGATTTCTTAGTCCCT 59.107 47.826 0.00 0.00 0.00 4.20
805 857 1.269448 CTGCACACGCCAAATACCTTT 59.731 47.619 0.00 0.00 37.32 3.11
886 992 3.512329 CCTATATATACACACACCCGCCA 59.488 47.826 0.00 0.00 0.00 5.69
887 993 4.020928 CCTATATATACACACACCCGCCAA 60.021 45.833 0.00 0.00 0.00 4.52
888 994 2.791347 ATATACACACACCCGCCAAA 57.209 45.000 0.00 0.00 0.00 3.28
889 995 2.102070 TATACACACACCCGCCAAAG 57.898 50.000 0.00 0.00 0.00 2.77
896 1002 0.750249 ACACCCGCCAAAGAAAAAGG 59.250 50.000 0.00 0.00 0.00 3.11
973 1104 1.065418 AGAAACCACCACATCCCGATC 60.065 52.381 0.00 0.00 0.00 3.69
974 1105 0.034477 AAACCACCACATCCCGATCC 60.034 55.000 0.00 0.00 0.00 3.36
975 1106 1.921869 AACCACCACATCCCGATCCC 61.922 60.000 0.00 0.00 0.00 3.85
977 1108 1.607071 CACCACATCCCGATCCCAA 59.393 57.895 0.00 0.00 0.00 4.12
992 1128 1.577328 CCCAATTCGCAACGCAGAGT 61.577 55.000 0.00 0.00 0.00 3.24
1126 1266 4.421479 CGGTCAAGTCGGCGAGCT 62.421 66.667 11.20 8.10 0.00 4.09
1162 1302 2.203832 TGAGGAGGGAGCAGTGCA 60.204 61.111 19.20 0.00 0.00 4.57
1251 1391 1.343069 ACCAGCTCTTCCTCGAGTTT 58.657 50.000 12.31 0.00 33.55 2.66
1288 1428 4.570663 CCGACCGAGTGGCGATCC 62.571 72.222 0.00 0.00 44.57 3.36
1785 1925 3.710722 CAGTTCCTGGCCTCGGCT 61.711 66.667 3.32 0.00 41.60 5.52
1816 1968 3.976701 AAGCCGCGAACCATGGAGG 62.977 63.158 21.47 13.84 45.67 4.30
1823 1987 1.185315 CGAACCATGGAGGGCAAATT 58.815 50.000 21.47 0.00 43.89 1.82
1867 2031 3.085208 GCAGCATTCTGGGAATCGA 57.915 52.632 0.00 0.00 40.65 3.59
1878 2042 2.604914 CTGGGAATCGAATTCAGACACG 59.395 50.000 6.22 0.00 41.03 4.49
1881 2045 3.458189 GGAATCGAATTCAGACACGGAT 58.542 45.455 6.22 0.00 41.03 4.18
2050 2238 0.970937 GGAGATGACCGACCTGGACA 60.971 60.000 0.00 0.00 46.39 4.02
2054 2242 2.167398 ATGACCGACCTGGACAACGG 62.167 60.000 18.26 18.26 45.48 4.44
2076 2264 1.136057 GCGATCACAAACGAAGAACCC 60.136 52.381 0.00 0.00 0.00 4.11
2101 2289 2.182030 CAGAGTCCGGCGTTCTCC 59.818 66.667 19.49 7.18 0.00 3.71
2133 2321 1.153901 CGTGGAGTACAACGGCGAT 60.154 57.895 16.62 0.00 0.00 4.58
2134 2322 1.410737 CGTGGAGTACAACGGCGATG 61.411 60.000 16.62 16.22 0.00 3.84
2135 2323 1.082117 GTGGAGTACAACGGCGATGG 61.082 60.000 21.20 8.72 0.00 3.51
2138 2326 1.004320 AGTACAACGGCGATGGCAA 60.004 52.632 21.20 3.70 42.47 4.52
2139 2327 0.392461 AGTACAACGGCGATGGCAAT 60.392 50.000 21.20 5.22 42.47 3.56
2140 2328 1.134640 AGTACAACGGCGATGGCAATA 60.135 47.619 21.20 1.73 42.47 1.90
2168 2371 1.781429 CGACGATTCAGTTAGGCATCG 59.219 52.381 0.00 0.00 43.36 3.84
2169 2372 2.961526 ACGATTCAGTTAGGCATCGT 57.038 45.000 0.33 0.33 45.26 3.73
2175 2378 2.447443 TCAGTTAGGCATCGTCAGTCT 58.553 47.619 0.00 0.00 0.00 3.24
2178 2381 3.997021 CAGTTAGGCATCGTCAGTCTTTT 59.003 43.478 0.00 0.00 0.00 2.27
2192 2395 6.195165 GTCAGTCTTTTGAGTGTTTAGCTTG 58.805 40.000 0.00 0.00 46.95 4.01
2211 2414 4.554723 GCTTGCCACGAATTATCATGTACC 60.555 45.833 0.00 0.00 0.00 3.34
2246 2449 5.003692 TGCAACACAAAGAGTAATGCAAA 57.996 34.783 0.00 0.00 43.64 3.68
2255 2458 5.415415 AAGAGTAATGCAAATGATCTCGC 57.585 39.130 0.00 0.00 0.00 5.03
2319 2522 3.134127 GCTCCCCATTGCGACACC 61.134 66.667 0.00 0.00 0.00 4.16
2341 2544 4.335594 CCTTCGATTAGGCGGAAGAAATTT 59.664 41.667 0.00 0.00 0.00 1.82
2367 2570 3.875727 TGCTACTTCGCCTGTACTACTAG 59.124 47.826 0.00 0.00 0.00 2.57
2368 2571 3.250521 GCTACTTCGCCTGTACTACTAGG 59.749 52.174 0.00 0.00 37.14 3.02
2470 2679 2.032071 CTTCCACCGCGAAAGGGT 59.968 61.111 8.23 0.00 43.37 4.34
2472 2681 1.574702 CTTCCACCGCGAAAGGGTTC 61.575 60.000 8.23 0.00 43.37 3.62
2489 2698 0.031043 TTCGAGTTGACGCGGAAAGA 59.969 50.000 12.47 0.92 39.60 2.52
2492 2701 0.944311 GAGTTGACGCGGAAAGAGCA 60.944 55.000 12.47 0.00 34.19 4.26
2519 2728 0.108898 AGCAGCTCACGCACTAGAAG 60.109 55.000 0.00 0.00 39.10 2.85
2529 2738 1.576356 GCACTAGAAGCGATCCTTGG 58.424 55.000 0.00 0.00 32.78 3.61
2530 2739 1.808133 GCACTAGAAGCGATCCTTGGG 60.808 57.143 0.00 0.00 32.78 4.12
2531 2740 1.757118 CACTAGAAGCGATCCTTGGGA 59.243 52.381 0.00 0.00 32.78 4.37
2535 2744 1.630878 AGAAGCGATCCTTGGGAAAGT 59.369 47.619 1.70 0.00 34.34 2.66
2537 2746 2.990066 AGCGATCCTTGGGAAAGTAG 57.010 50.000 0.00 0.00 34.34 2.57
2538 2747 2.188817 AGCGATCCTTGGGAAAGTAGT 58.811 47.619 0.00 0.00 34.34 2.73
2539 2748 3.371965 AGCGATCCTTGGGAAAGTAGTA 58.628 45.455 0.00 0.00 34.34 1.82
2540 2749 3.385111 AGCGATCCTTGGGAAAGTAGTAG 59.615 47.826 0.00 0.00 34.34 2.57
2541 2750 3.132467 GCGATCCTTGGGAAAGTAGTAGT 59.868 47.826 0.00 0.00 34.34 2.73
2542 2751 4.340381 GCGATCCTTGGGAAAGTAGTAGTA 59.660 45.833 0.00 0.00 34.34 1.82
2543 2752 5.735638 GCGATCCTTGGGAAAGTAGTAGTAC 60.736 48.000 0.00 0.00 34.34 2.73
2571 2780 3.030652 CGCGGCCAGTCAAAAACT 58.969 55.556 2.24 0.00 39.44 2.66
2572 2781 1.847890 GCGCGGCCAGTCAAAAACTA 61.848 55.000 8.83 0.00 36.07 2.24
2573 2782 0.802494 CGCGGCCAGTCAAAAACTAT 59.198 50.000 2.24 0.00 36.07 2.12
2574 2783 1.199097 CGCGGCCAGTCAAAAACTATT 59.801 47.619 2.24 0.00 36.07 1.73
2627 2836 1.959226 GCCGACCAGTGAAAGCGAA 60.959 57.895 0.00 0.00 0.00 4.70
2636 2845 3.181491 CCAGTGAAAGCGAAACCTTTTCA 60.181 43.478 0.00 0.00 35.31 2.69
2639 2848 3.239712 GTGAAAGCGAAACCTTTTCAACG 59.760 43.478 0.97 0.00 35.31 4.10
2656 2865 2.492090 GAGTGAGCGTCGCATCCT 59.508 61.111 21.09 11.02 0.00 3.24
2661 2870 1.361993 GAGCGTCGCATCCTGAGAT 59.638 57.895 21.09 0.00 0.00 2.75
2662 2871 0.249238 GAGCGTCGCATCCTGAGATT 60.249 55.000 21.09 0.00 0.00 2.40
2665 2874 0.179100 CGTCGCATCCTGAGATTGGT 60.179 55.000 0.00 0.00 0.00 3.67
2815 3055 1.996292 CTCTCCGTGCTTCGAATCAA 58.004 50.000 2.77 0.00 42.86 2.57
2819 3059 2.066262 TCCGTGCTTCGAATCAAGTTC 58.934 47.619 12.68 0.00 42.86 3.01
2822 3062 2.480419 CGTGCTTCGAATCAAGTTCCTT 59.520 45.455 2.77 0.00 42.86 3.36
2823 3063 3.058914 CGTGCTTCGAATCAAGTTCCTTT 60.059 43.478 2.77 0.00 42.86 3.11
2824 3064 4.554723 CGTGCTTCGAATCAAGTTCCTTTT 60.555 41.667 2.77 0.00 42.86 2.27
2825 3065 5.281727 GTGCTTCGAATCAAGTTCCTTTTT 58.718 37.500 2.77 0.00 33.04 1.94
2849 3089 9.535878 TTTTTATTGCTTAACTGAAATTCGGTT 57.464 25.926 21.96 21.96 46.73 4.44
2860 3100 7.222000 ACTGAAATTCGGTTAAAATTAGCCA 57.778 32.000 0.85 0.00 30.35 4.75
2861 3101 7.836842 ACTGAAATTCGGTTAAAATTAGCCAT 58.163 30.769 0.85 0.00 30.35 4.40
2862 3102 7.759433 ACTGAAATTCGGTTAAAATTAGCCATG 59.241 33.333 0.85 0.00 30.35 3.66
2863 3103 7.831753 TGAAATTCGGTTAAAATTAGCCATGA 58.168 30.769 0.00 0.00 34.08 3.07
2864 3104 7.973388 TGAAATTCGGTTAAAATTAGCCATGAG 59.027 33.333 0.00 0.00 34.08 2.90
2865 3105 5.828299 TTCGGTTAAAATTAGCCATGAGG 57.172 39.130 0.00 0.00 34.08 3.86
2877 3117 1.825090 CCATGAGGCTGCTAACAACA 58.175 50.000 0.00 0.00 0.00 3.33
2878 3118 2.372264 CCATGAGGCTGCTAACAACAT 58.628 47.619 0.00 0.00 0.00 2.71
2879 3119 2.756760 CCATGAGGCTGCTAACAACATT 59.243 45.455 0.00 0.00 0.00 2.71
2880 3120 3.194116 CCATGAGGCTGCTAACAACATTT 59.806 43.478 0.00 0.00 0.00 2.32
2881 3121 4.398988 CCATGAGGCTGCTAACAACATTTA 59.601 41.667 0.00 0.00 0.00 1.40
2882 3122 5.449588 CCATGAGGCTGCTAACAACATTTAG 60.450 44.000 0.00 0.00 32.92 1.85
2883 3123 4.905429 TGAGGCTGCTAACAACATTTAGA 58.095 39.130 0.00 0.00 31.60 2.10
2884 3124 5.312895 TGAGGCTGCTAACAACATTTAGAA 58.687 37.500 0.00 0.00 31.60 2.10
2885 3125 5.767665 TGAGGCTGCTAACAACATTTAGAAA 59.232 36.000 0.00 0.00 31.60 2.52
2886 3126 6.013842 AGGCTGCTAACAACATTTAGAAAC 57.986 37.500 0.00 0.00 31.60 2.78
2887 3127 5.048013 AGGCTGCTAACAACATTTAGAAACC 60.048 40.000 0.00 0.00 31.60 3.27
2888 3128 5.278758 GGCTGCTAACAACATTTAGAAACCA 60.279 40.000 0.00 0.00 31.60 3.67
2889 3129 6.389906 GCTGCTAACAACATTTAGAAACCAT 58.610 36.000 0.00 0.00 31.60 3.55
2890 3130 6.528072 GCTGCTAACAACATTTAGAAACCATC 59.472 38.462 0.00 0.00 31.60 3.51
2891 3131 6.919721 TGCTAACAACATTTAGAAACCATCC 58.080 36.000 0.00 0.00 31.60 3.51
2892 3132 6.491745 TGCTAACAACATTTAGAAACCATCCA 59.508 34.615 0.00 0.00 31.60 3.41
2893 3133 7.029563 GCTAACAACATTTAGAAACCATCCAG 58.970 38.462 0.00 0.00 31.60 3.86
2894 3134 5.982890 ACAACATTTAGAAACCATCCAGG 57.017 39.130 0.00 0.00 45.67 4.45
2895 3135 7.176690 CTAACAACATTTAGAAACCATCCAGGT 59.823 37.037 0.00 0.00 40.86 4.00
2907 3147 3.696045 CCATCCAGGTGGTACAAATTCA 58.304 45.455 0.00 0.00 44.16 2.57
2908 3148 3.696051 CCATCCAGGTGGTACAAATTCAG 59.304 47.826 0.00 0.00 44.16 3.02
2909 3149 3.433306 TCCAGGTGGTACAAATTCAGG 57.567 47.619 0.00 0.00 44.16 3.86
2910 3150 2.041081 TCCAGGTGGTACAAATTCAGGG 59.959 50.000 0.00 0.00 44.16 4.45
2911 3151 1.818674 CAGGTGGTACAAATTCAGGGC 59.181 52.381 0.00 0.00 44.16 5.19
2912 3152 1.427368 AGGTGGTACAAATTCAGGGCA 59.573 47.619 0.00 0.00 44.16 5.36
2913 3153 1.818674 GGTGGTACAAATTCAGGGCAG 59.181 52.381 0.00 0.00 44.16 4.85
2914 3154 2.514803 GTGGTACAAATTCAGGGCAGT 58.485 47.619 0.00 0.00 44.16 4.40
2915 3155 2.228822 GTGGTACAAATTCAGGGCAGTG 59.771 50.000 0.00 0.00 44.16 3.66
2916 3156 1.202348 GGTACAAATTCAGGGCAGTGC 59.798 52.381 6.55 6.55 0.00 4.40
2917 3157 1.885887 GTACAAATTCAGGGCAGTGCA 59.114 47.619 18.61 0.00 0.00 4.57
2918 3158 0.963962 ACAAATTCAGGGCAGTGCAG 59.036 50.000 18.61 6.27 0.00 4.41
2919 3159 1.250328 CAAATTCAGGGCAGTGCAGA 58.750 50.000 18.61 8.75 0.00 4.26
2920 3160 1.822990 CAAATTCAGGGCAGTGCAGAT 59.177 47.619 18.61 0.00 0.00 2.90
2921 3161 3.018856 CAAATTCAGGGCAGTGCAGATA 58.981 45.455 18.61 0.00 0.00 1.98
2922 3162 3.589951 AATTCAGGGCAGTGCAGATAT 57.410 42.857 18.61 0.30 0.00 1.63
2923 3163 2.627515 TTCAGGGCAGTGCAGATATC 57.372 50.000 18.61 0.00 0.00 1.63
2924 3164 1.499368 TCAGGGCAGTGCAGATATCA 58.501 50.000 18.61 0.00 0.00 2.15
2925 3165 2.052468 TCAGGGCAGTGCAGATATCAT 58.948 47.619 18.61 0.00 0.00 2.45
2926 3166 2.152016 CAGGGCAGTGCAGATATCATG 58.848 52.381 18.61 2.07 0.00 3.07
2927 3167 0.879765 GGGCAGTGCAGATATCATGC 59.120 55.000 18.61 15.90 44.11 4.06
2949 3189 9.398170 CATGCATAACTGTAATAATTACCTTGC 57.602 33.333 0.00 0.00 35.25 4.01
2950 3190 8.512966 TGCATAACTGTAATAATTACCTTGCA 57.487 30.769 0.00 0.00 35.25 4.08
2951 3191 9.130661 TGCATAACTGTAATAATTACCTTGCAT 57.869 29.630 0.00 0.00 35.25 3.96
2952 3192 9.612620 GCATAACTGTAATAATTACCTTGCATC 57.387 33.333 0.00 0.00 35.25 3.91
2962 3202 8.854614 ATAATTACCTTGCATCTATCAGTTCC 57.145 34.615 0.00 0.00 0.00 3.62
2963 3203 5.692115 TTACCTTGCATCTATCAGTTCCA 57.308 39.130 0.00 0.00 0.00 3.53
2964 3204 4.574674 ACCTTGCATCTATCAGTTCCAA 57.425 40.909 0.00 0.00 0.00 3.53
2965 3205 4.922206 ACCTTGCATCTATCAGTTCCAAA 58.078 39.130 0.00 0.00 0.00 3.28
2966 3206 5.513233 ACCTTGCATCTATCAGTTCCAAAT 58.487 37.500 0.00 0.00 0.00 2.32
2967 3207 6.662755 ACCTTGCATCTATCAGTTCCAAATA 58.337 36.000 0.00 0.00 0.00 1.40
2968 3208 7.118723 ACCTTGCATCTATCAGTTCCAAATAA 58.881 34.615 0.00 0.00 0.00 1.40
2969 3209 7.067494 ACCTTGCATCTATCAGTTCCAAATAAC 59.933 37.037 0.00 0.00 0.00 1.89
2970 3210 7.067372 CCTTGCATCTATCAGTTCCAAATAACA 59.933 37.037 0.00 0.00 0.00 2.41
2971 3211 8.523915 TTGCATCTATCAGTTCCAAATAACAT 57.476 30.769 0.00 0.00 0.00 2.71
2972 3212 8.523915 TGCATCTATCAGTTCCAAATAACATT 57.476 30.769 0.00 0.00 0.00 2.71
2973 3213 8.970020 TGCATCTATCAGTTCCAAATAACATTT 58.030 29.630 0.00 0.00 0.00 2.32
2974 3214 9.807649 GCATCTATCAGTTCCAAATAACATTTT 57.192 29.630 0.00 0.00 0.00 1.82
2980 3220 8.870160 TCAGTTCCAAATAACATTTTGTCTTG 57.130 30.769 0.00 0.00 35.30 3.02
2981 3221 8.474025 TCAGTTCCAAATAACATTTTGTCTTGT 58.526 29.630 0.00 0.00 35.30 3.16
2982 3222 9.743057 CAGTTCCAAATAACATTTTGTCTTGTA 57.257 29.630 0.00 0.00 35.30 2.41
2990 3230 8.728088 ATAACATTTTGTCTTGTAAAAGAGCG 57.272 30.769 0.00 0.00 31.31 5.03
2991 3231 5.519722 ACATTTTGTCTTGTAAAAGAGCGG 58.480 37.500 0.00 0.00 31.31 5.52
2992 3232 5.067283 ACATTTTGTCTTGTAAAAGAGCGGT 59.933 36.000 0.00 0.00 31.31 5.68
2993 3233 4.806342 TTTGTCTTGTAAAAGAGCGGTC 57.194 40.909 6.48 6.48 0.00 4.79
2994 3234 2.762745 TGTCTTGTAAAAGAGCGGTCC 58.237 47.619 11.73 0.00 0.00 4.46
2995 3235 2.103432 TGTCTTGTAAAAGAGCGGTCCA 59.897 45.455 11.73 0.00 0.00 4.02
2996 3236 2.479275 GTCTTGTAAAAGAGCGGTCCAC 59.521 50.000 11.73 5.23 0.00 4.02
2997 3237 2.103432 TCTTGTAAAAGAGCGGTCCACA 59.897 45.455 11.73 7.84 0.00 4.17
2998 3238 2.623878 TGTAAAAGAGCGGTCCACAA 57.376 45.000 11.73 0.00 0.00 3.33
2999 3239 2.215196 TGTAAAAGAGCGGTCCACAAC 58.785 47.619 11.73 5.95 0.00 3.32
3000 3240 2.215196 GTAAAAGAGCGGTCCACAACA 58.785 47.619 11.73 0.00 0.00 3.33
3001 3241 1.308998 AAAAGAGCGGTCCACAACAG 58.691 50.000 11.73 0.00 0.00 3.16
3002 3242 0.180406 AAAGAGCGGTCCACAACAGT 59.820 50.000 11.73 0.00 0.00 3.55
3003 3243 0.180406 AAGAGCGGTCCACAACAGTT 59.820 50.000 11.73 0.00 0.00 3.16
3004 3244 0.180406 AGAGCGGTCCACAACAGTTT 59.820 50.000 11.73 0.00 0.00 2.66
3005 3245 0.586802 GAGCGGTCCACAACAGTTTC 59.413 55.000 2.39 0.00 0.00 2.78
3006 3246 0.180406 AGCGGTCCACAACAGTTTCT 59.820 50.000 0.00 0.00 0.00 2.52
3007 3247 0.586802 GCGGTCCACAACAGTTTCTC 59.413 55.000 0.00 0.00 0.00 2.87
3008 3248 1.948104 CGGTCCACAACAGTTTCTCA 58.052 50.000 0.00 0.00 0.00 3.27
3009 3249 1.597663 CGGTCCACAACAGTTTCTCAC 59.402 52.381 0.00 0.00 0.00 3.51
3010 3250 2.639065 GGTCCACAACAGTTTCTCACA 58.361 47.619 0.00 0.00 0.00 3.58
3011 3251 3.214328 GGTCCACAACAGTTTCTCACAT 58.786 45.455 0.00 0.00 0.00 3.21
3012 3252 3.003689 GGTCCACAACAGTTTCTCACATG 59.996 47.826 0.00 0.00 0.00 3.21
3013 3253 3.627577 GTCCACAACAGTTTCTCACATGT 59.372 43.478 0.00 0.00 0.00 3.21
3014 3254 4.096382 GTCCACAACAGTTTCTCACATGTT 59.904 41.667 0.00 0.00 36.34 2.71
3020 3260 5.741388 ACAGTTTCTCACATGTTGAAGTC 57.259 39.130 0.00 2.32 32.21 3.01
3021 3261 5.431765 ACAGTTTCTCACATGTTGAAGTCT 58.568 37.500 0.00 4.40 32.21 3.24
3022 3262 5.525378 ACAGTTTCTCACATGTTGAAGTCTC 59.475 40.000 0.00 0.00 32.21 3.36
3023 3263 5.049818 CAGTTTCTCACATGTTGAAGTCTCC 60.050 44.000 0.00 0.00 32.21 3.71
3024 3264 4.687901 TTCTCACATGTTGAAGTCTCCA 57.312 40.909 0.00 0.00 32.21 3.86
3025 3265 4.687901 TCTCACATGTTGAAGTCTCCAA 57.312 40.909 0.00 0.00 32.21 3.53
3026 3266 5.233083 TCTCACATGTTGAAGTCTCCAAT 57.767 39.130 0.00 0.00 32.21 3.16
3027 3267 4.999311 TCTCACATGTTGAAGTCTCCAATG 59.001 41.667 0.00 0.00 32.21 2.82
3028 3268 4.717877 TCACATGTTGAAGTCTCCAATGT 58.282 39.130 0.00 0.00 0.00 2.71
3029 3269 4.516321 TCACATGTTGAAGTCTCCAATGTG 59.484 41.667 0.00 6.55 36.56 3.21
3030 3270 4.516321 CACATGTTGAAGTCTCCAATGTGA 59.484 41.667 0.00 0.00 36.99 3.58
3031 3271 5.182570 CACATGTTGAAGTCTCCAATGTGAT 59.817 40.000 0.00 0.00 36.99 3.06
3032 3272 5.771666 ACATGTTGAAGTCTCCAATGTGATT 59.228 36.000 0.00 0.00 0.00 2.57
3033 3273 5.694231 TGTTGAAGTCTCCAATGTGATTG 57.306 39.130 0.00 0.00 39.94 2.67
3034 3274 4.022935 TGTTGAAGTCTCCAATGTGATTGC 60.023 41.667 0.00 0.00 38.92 3.56
3035 3275 4.025040 TGAAGTCTCCAATGTGATTGCT 57.975 40.909 0.00 0.00 38.92 3.91
3036 3276 4.401022 TGAAGTCTCCAATGTGATTGCTT 58.599 39.130 0.00 0.00 38.92 3.91
3037 3277 4.456911 TGAAGTCTCCAATGTGATTGCTTC 59.543 41.667 0.00 0.00 38.92 3.86
3038 3278 3.350833 AGTCTCCAATGTGATTGCTTCC 58.649 45.455 0.00 0.00 38.92 3.46
3039 3279 3.009916 AGTCTCCAATGTGATTGCTTCCT 59.990 43.478 0.00 0.00 38.92 3.36
3040 3280 3.376546 GTCTCCAATGTGATTGCTTCCTC 59.623 47.826 0.00 0.00 38.92 3.71
3041 3281 3.265221 TCTCCAATGTGATTGCTTCCTCT 59.735 43.478 0.00 0.00 38.92 3.69
3042 3282 4.471025 TCTCCAATGTGATTGCTTCCTCTA 59.529 41.667 0.00 0.00 38.92 2.43
3043 3283 4.774124 TCCAATGTGATTGCTTCCTCTAG 58.226 43.478 0.00 0.00 38.92 2.43
3044 3284 4.471025 TCCAATGTGATTGCTTCCTCTAGA 59.529 41.667 0.00 0.00 38.92 2.43
3045 3285 4.815308 CCAATGTGATTGCTTCCTCTAGAG 59.185 45.833 13.18 13.18 38.92 2.43
3046 3286 3.533606 TGTGATTGCTTCCTCTAGAGC 57.466 47.619 14.73 4.44 0.00 4.09
3047 3287 2.833943 TGTGATTGCTTCCTCTAGAGCA 59.166 45.455 14.73 7.27 35.31 4.26
3048 3288 3.453717 TGTGATTGCTTCCTCTAGAGCAT 59.546 43.478 14.73 1.05 37.13 3.79
3049 3289 4.651045 TGTGATTGCTTCCTCTAGAGCATA 59.349 41.667 14.73 0.03 37.13 3.14
3050 3290 5.306419 TGTGATTGCTTCCTCTAGAGCATAT 59.694 40.000 14.73 6.65 37.13 1.78
3051 3291 5.638657 GTGATTGCTTCCTCTAGAGCATATG 59.361 44.000 14.73 0.00 37.13 1.78
3052 3292 5.541484 TGATTGCTTCCTCTAGAGCATATGA 59.459 40.000 14.73 2.90 37.13 2.15
3053 3293 4.862902 TGCTTCCTCTAGAGCATATGAC 57.137 45.455 14.73 0.00 31.84 3.06
3054 3294 3.254411 TGCTTCCTCTAGAGCATATGACG 59.746 47.826 14.73 4.86 31.84 4.35
3055 3295 3.832276 CTTCCTCTAGAGCATATGACGC 58.168 50.000 14.73 0.00 0.00 5.19
3056 3296 3.147553 TCCTCTAGAGCATATGACGCT 57.852 47.619 14.73 7.66 44.10 5.07
3060 3300 4.643733 GAGCATATGACGCTCGCT 57.356 55.556 6.97 0.00 45.82 4.93
3061 3301 2.429447 GAGCATATGACGCTCGCTC 58.571 57.895 6.97 0.00 45.82 5.03
3062 3302 1.006314 GAGCATATGACGCTCGCTCC 61.006 60.000 6.97 0.00 45.82 4.70
3063 3303 2.368105 GCATATGACGCTCGCTCCG 61.368 63.158 6.97 0.00 0.00 4.63
3064 3304 1.282875 CATATGACGCTCGCTCCGA 59.717 57.895 0.00 0.00 0.00 4.55
3073 3313 3.439008 TCGCTCCGAGTCACAACA 58.561 55.556 0.00 0.00 0.00 3.33
3074 3314 1.285950 TCGCTCCGAGTCACAACAG 59.714 57.895 0.00 0.00 0.00 3.16
3075 3315 2.375766 CGCTCCGAGTCACAACAGC 61.376 63.158 0.00 0.00 0.00 4.40
3076 3316 1.300931 GCTCCGAGTCACAACAGCA 60.301 57.895 0.00 0.00 0.00 4.41
3077 3317 1.560860 GCTCCGAGTCACAACAGCAC 61.561 60.000 0.00 0.00 0.00 4.40
3078 3318 0.946221 CTCCGAGTCACAACAGCACC 60.946 60.000 0.00 0.00 0.00 5.01
3079 3319 1.227527 CCGAGTCACAACAGCACCA 60.228 57.895 0.00 0.00 0.00 4.17
3080 3320 0.813610 CCGAGTCACAACAGCACCAA 60.814 55.000 0.00 0.00 0.00 3.67
3081 3321 0.583438 CGAGTCACAACAGCACCAAG 59.417 55.000 0.00 0.00 0.00 3.61
3082 3322 0.947244 GAGTCACAACAGCACCAAGG 59.053 55.000 0.00 0.00 0.00 3.61
3083 3323 0.546122 AGTCACAACAGCACCAAGGA 59.454 50.000 0.00 0.00 0.00 3.36
3084 3324 1.143684 AGTCACAACAGCACCAAGGAT 59.856 47.619 0.00 0.00 0.00 3.24
3085 3325 1.267806 GTCACAACAGCACCAAGGATG 59.732 52.381 0.00 0.00 0.00 3.51
3086 3326 1.142667 TCACAACAGCACCAAGGATGA 59.857 47.619 0.00 0.00 0.00 2.92
3087 3327 2.165167 CACAACAGCACCAAGGATGAT 58.835 47.619 0.00 0.00 0.00 2.45
3088 3328 2.559668 CACAACAGCACCAAGGATGATT 59.440 45.455 0.00 0.00 0.00 2.57
3089 3329 3.006110 CACAACAGCACCAAGGATGATTT 59.994 43.478 0.00 0.00 0.00 2.17
3090 3330 3.642848 ACAACAGCACCAAGGATGATTTT 59.357 39.130 0.00 0.00 0.00 1.82
3091 3331 4.832266 ACAACAGCACCAAGGATGATTTTA 59.168 37.500 0.00 0.00 0.00 1.52
3092 3332 5.163513 CAACAGCACCAAGGATGATTTTAC 58.836 41.667 0.00 0.00 0.00 2.01
3093 3333 4.406456 ACAGCACCAAGGATGATTTTACA 58.594 39.130 0.00 0.00 0.00 2.41
3094 3334 4.832266 ACAGCACCAAGGATGATTTTACAA 59.168 37.500 0.00 0.00 0.00 2.41
3095 3335 5.481473 ACAGCACCAAGGATGATTTTACAAT 59.519 36.000 0.00 0.00 0.00 2.71
3096 3336 6.663093 ACAGCACCAAGGATGATTTTACAATA 59.337 34.615 0.00 0.00 0.00 1.90
3097 3337 7.342799 ACAGCACCAAGGATGATTTTACAATAT 59.657 33.333 0.00 0.00 0.00 1.28
3098 3338 8.849168 CAGCACCAAGGATGATTTTACAATATA 58.151 33.333 0.00 0.00 0.00 0.86
3099 3339 9.420118 AGCACCAAGGATGATTTTACAATATAA 57.580 29.630 0.00 0.00 0.00 0.98
3116 3356 8.807948 ACAATATAATTCACCAAAGCTGTAGT 57.192 30.769 0.00 0.00 0.00 2.73
3117 3357 9.899661 ACAATATAATTCACCAAAGCTGTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
3124 3364 6.145338 TCACCAAAGCTGTAGTAGTATAGC 57.855 41.667 16.33 16.33 42.30 2.97
3125 3365 5.068723 TCACCAAAGCTGTAGTAGTATAGCC 59.931 44.000 19.42 5.50 42.82 3.93
3126 3366 5.069251 CACCAAAGCTGTAGTAGTATAGCCT 59.931 44.000 19.42 7.10 42.82 4.58
3127 3367 5.302313 ACCAAAGCTGTAGTAGTATAGCCTC 59.698 44.000 19.42 0.00 42.82 4.70
3128 3368 5.536916 CCAAAGCTGTAGTAGTATAGCCTCT 59.463 44.000 19.42 5.35 42.82 3.69
3129 3369 6.294286 CCAAAGCTGTAGTAGTATAGCCTCTC 60.294 46.154 19.42 0.00 42.82 3.20
3130 3370 4.571919 AGCTGTAGTAGTATAGCCTCTCG 58.428 47.826 19.42 0.00 42.82 4.04
3131 3371 4.040706 AGCTGTAGTAGTATAGCCTCTCGT 59.959 45.833 19.42 1.15 42.82 4.18
3132 3372 4.152759 GCTGTAGTAGTATAGCCTCTCGTG 59.847 50.000 13.82 0.00 37.41 4.35
3133 3373 5.287674 TGTAGTAGTATAGCCTCTCGTGT 57.712 43.478 0.00 0.00 0.00 4.49
3134 3374 5.295950 TGTAGTAGTATAGCCTCTCGTGTC 58.704 45.833 0.00 0.00 0.00 3.67
3135 3375 4.418973 AGTAGTATAGCCTCTCGTGTCA 57.581 45.455 0.00 0.00 0.00 3.58
3136 3376 4.778579 AGTAGTATAGCCTCTCGTGTCAA 58.221 43.478 0.00 0.00 0.00 3.18
3137 3377 4.817464 AGTAGTATAGCCTCTCGTGTCAAG 59.183 45.833 0.00 0.00 0.00 3.02
3138 3378 3.622630 AGTATAGCCTCTCGTGTCAAGT 58.377 45.455 0.00 0.00 0.00 3.16
3139 3379 2.949451 ATAGCCTCTCGTGTCAAGTG 57.051 50.000 0.00 0.00 0.00 3.16
3140 3380 1.905637 TAGCCTCTCGTGTCAAGTGA 58.094 50.000 0.00 0.00 0.00 3.41
3141 3381 0.315568 AGCCTCTCGTGTCAAGTGAC 59.684 55.000 4.43 4.43 44.97 3.67
3157 3397 8.641499 GTCAAGTGACACCAATGATTTTTAAA 57.359 30.769 6.57 0.00 44.18 1.52
3158 3398 9.092876 GTCAAGTGACACCAATGATTTTTAAAA 57.907 29.630 6.57 0.00 44.18 1.52
3159 3399 9.658799 TCAAGTGACACCAATGATTTTTAAAAA 57.341 25.926 15.38 15.38 0.00 1.94
3217 3457 8.908786 TTTTTAATTGACACCATTGCCATAAA 57.091 26.923 0.00 0.00 0.00 1.40
3218 3458 8.545229 TTTTAATTGACACCATTGCCATAAAG 57.455 30.769 0.00 0.00 0.00 1.85
3219 3459 3.591196 TTGACACCATTGCCATAAAGC 57.409 42.857 0.00 0.00 0.00 3.51
3220 3460 2.806434 TGACACCATTGCCATAAAGCT 58.194 42.857 0.00 0.00 0.00 3.74
3221 3461 2.492881 TGACACCATTGCCATAAAGCTG 59.507 45.455 0.00 0.00 0.00 4.24
3222 3462 2.754552 GACACCATTGCCATAAAGCTGA 59.245 45.455 0.00 0.00 0.00 4.26
3223 3463 3.368248 ACACCATTGCCATAAAGCTGAT 58.632 40.909 0.00 0.00 0.00 2.90
3224 3464 3.382546 ACACCATTGCCATAAAGCTGATC 59.617 43.478 0.00 0.00 0.00 2.92
3225 3465 2.961062 ACCATTGCCATAAAGCTGATCC 59.039 45.455 0.00 0.00 0.00 3.36
3226 3466 2.298163 CCATTGCCATAAAGCTGATCCC 59.702 50.000 0.00 0.00 0.00 3.85
3227 3467 2.824689 TTGCCATAAAGCTGATCCCA 57.175 45.000 0.00 0.00 0.00 4.37
3228 3468 3.317455 TTGCCATAAAGCTGATCCCAT 57.683 42.857 0.00 0.00 0.00 4.00
3229 3469 2.867624 TGCCATAAAGCTGATCCCATC 58.132 47.619 0.00 0.00 0.00 3.51
3230 3470 1.808945 GCCATAAAGCTGATCCCATCG 59.191 52.381 0.00 0.00 0.00 3.84
3231 3471 2.430465 CCATAAAGCTGATCCCATCGG 58.570 52.381 0.00 0.00 38.71 4.18
3232 3472 2.038952 CCATAAAGCTGATCCCATCGGA 59.961 50.000 0.00 0.00 44.33 4.55
3242 3482 3.778954 ATCCCATCGGATCTCTTTTCC 57.221 47.619 0.00 0.00 46.77 3.13
3243 3483 2.764269 TCCCATCGGATCTCTTTTCCT 58.236 47.619 0.00 0.00 31.13 3.36
3244 3484 2.435805 TCCCATCGGATCTCTTTTCCTG 59.564 50.000 0.00 0.00 31.13 3.86
3245 3485 2.216898 CCATCGGATCTCTTTTCCTGC 58.783 52.381 0.00 0.00 0.00 4.85
3246 3486 2.158842 CCATCGGATCTCTTTTCCTGCT 60.159 50.000 0.00 0.00 0.00 4.24
3247 3487 3.539604 CATCGGATCTCTTTTCCTGCTT 58.460 45.455 0.00 0.00 0.00 3.91
3248 3488 3.252974 TCGGATCTCTTTTCCTGCTTC 57.747 47.619 0.00 0.00 0.00 3.86
3249 3489 2.567169 TCGGATCTCTTTTCCTGCTTCA 59.433 45.455 0.00 0.00 0.00 3.02
3250 3490 2.675348 CGGATCTCTTTTCCTGCTTCAC 59.325 50.000 0.00 0.00 0.00 3.18
3251 3491 3.013219 GGATCTCTTTTCCTGCTTCACC 58.987 50.000 0.00 0.00 0.00 4.02
3252 3492 2.568623 TCTCTTTTCCTGCTTCACCC 57.431 50.000 0.00 0.00 0.00 4.61
3253 3493 1.774254 TCTCTTTTCCTGCTTCACCCA 59.226 47.619 0.00 0.00 0.00 4.51
3254 3494 2.376518 TCTCTTTTCCTGCTTCACCCAT 59.623 45.455 0.00 0.00 0.00 4.00
3255 3495 2.490903 CTCTTTTCCTGCTTCACCCATG 59.509 50.000 0.00 0.00 0.00 3.66
3256 3496 2.108075 TCTTTTCCTGCTTCACCCATGA 59.892 45.455 0.00 0.00 0.00 3.07
3257 3497 2.673775 TTTCCTGCTTCACCCATGAA 57.326 45.000 0.00 0.00 42.73 2.57
3258 3498 1.909700 TTCCTGCTTCACCCATGAAC 58.090 50.000 0.00 0.00 40.01 3.18
3259 3499 0.770499 TCCTGCTTCACCCATGAACA 59.230 50.000 0.00 0.00 40.01 3.18
3260 3500 1.171308 CCTGCTTCACCCATGAACAG 58.829 55.000 0.00 10.25 40.01 3.16
3261 3501 1.171308 CTGCTTCACCCATGAACAGG 58.829 55.000 0.00 0.00 40.01 4.00
3268 3508 4.265206 CCATGAACAGGGATGCCC 57.735 61.111 0.00 0.00 45.90 5.36
3278 3518 1.073199 GGGATGCCCTGGATTACCG 59.927 63.158 0.00 0.00 41.34 4.02
3279 3519 1.415672 GGGATGCCCTGGATTACCGA 61.416 60.000 0.00 0.00 41.34 4.69
3280 3520 0.693049 GGATGCCCTGGATTACCGAT 59.307 55.000 0.00 0.00 39.42 4.18
3281 3521 1.073923 GGATGCCCTGGATTACCGATT 59.926 52.381 0.00 0.00 39.42 3.34
3282 3522 2.304761 GGATGCCCTGGATTACCGATTA 59.695 50.000 0.00 0.00 39.42 1.75
3283 3523 3.600388 GATGCCCTGGATTACCGATTAG 58.400 50.000 0.00 0.00 39.42 1.73
3284 3524 2.684943 TGCCCTGGATTACCGATTAGA 58.315 47.619 0.00 0.00 39.42 2.10
3285 3525 3.042682 TGCCCTGGATTACCGATTAGAA 58.957 45.455 0.00 0.00 39.42 2.10
3286 3526 3.181458 TGCCCTGGATTACCGATTAGAAC 60.181 47.826 0.00 0.00 39.42 3.01
3287 3527 3.181458 GCCCTGGATTACCGATTAGAACA 60.181 47.826 0.00 0.00 39.42 3.18
3288 3528 4.632153 CCCTGGATTACCGATTAGAACAG 58.368 47.826 0.00 0.00 39.42 3.16
3289 3529 4.101119 CCCTGGATTACCGATTAGAACAGT 59.899 45.833 0.00 0.00 39.42 3.55
3290 3530 5.303589 CCCTGGATTACCGATTAGAACAGTA 59.696 44.000 0.00 0.00 39.42 2.74
3291 3531 6.214399 CCTGGATTACCGATTAGAACAGTAC 58.786 44.000 0.00 0.00 39.42 2.73
3292 3532 6.040616 CCTGGATTACCGATTAGAACAGTACT 59.959 42.308 0.00 0.00 39.42 2.73
3293 3533 7.414222 TGGATTACCGATTAGAACAGTACTT 57.586 36.000 0.00 0.00 39.42 2.24
3294 3534 7.486647 TGGATTACCGATTAGAACAGTACTTC 58.513 38.462 0.00 0.00 39.42 3.01
3295 3535 7.123098 TGGATTACCGATTAGAACAGTACTTCA 59.877 37.037 0.00 0.00 39.42 3.02
3296 3536 7.434602 GGATTACCGATTAGAACAGTACTTCAC 59.565 40.741 0.00 0.00 0.00 3.18
3297 3537 4.730657 ACCGATTAGAACAGTACTTCACG 58.269 43.478 0.00 0.00 0.00 4.35
3298 3538 3.546670 CCGATTAGAACAGTACTTCACGC 59.453 47.826 0.00 0.00 0.00 5.34
3299 3539 3.546670 CGATTAGAACAGTACTTCACGCC 59.453 47.826 0.00 0.00 0.00 5.68
3300 3540 3.308438 TTAGAACAGTACTTCACGCCC 57.692 47.619 0.00 0.00 0.00 6.13
3301 3541 1.339097 AGAACAGTACTTCACGCCCT 58.661 50.000 0.00 0.00 0.00 5.19
3302 3542 1.000955 AGAACAGTACTTCACGCCCTG 59.999 52.381 0.00 0.00 0.00 4.45
3303 3543 0.756903 AACAGTACTTCACGCCCTGT 59.243 50.000 0.00 0.00 37.96 4.00
3312 3552 4.972733 ACGCCCTGTGCATGCCAA 62.973 61.111 16.68 1.77 41.33 4.52
3313 3553 3.682885 CGCCCTGTGCATGCCAAA 61.683 61.111 16.68 0.00 41.33 3.28
3314 3554 2.263540 GCCCTGTGCATGCCAAAG 59.736 61.111 16.68 9.72 40.77 2.77
3315 3555 2.576832 GCCCTGTGCATGCCAAAGT 61.577 57.895 16.68 0.00 40.77 2.66
3316 3556 2.051941 CCCTGTGCATGCCAAAGTT 58.948 52.632 16.68 0.00 0.00 2.66
3317 3557 0.037975 CCCTGTGCATGCCAAAGTTC 60.038 55.000 16.68 0.00 0.00 3.01
3318 3558 0.963962 CCTGTGCATGCCAAAGTTCT 59.036 50.000 16.68 0.00 0.00 3.01
3319 3559 1.342174 CCTGTGCATGCCAAAGTTCTT 59.658 47.619 16.68 0.00 0.00 2.52
3320 3560 2.224113 CCTGTGCATGCCAAAGTTCTTT 60.224 45.455 16.68 0.00 0.00 2.52
3321 3561 3.460103 CTGTGCATGCCAAAGTTCTTTT 58.540 40.909 16.68 0.00 0.00 2.27
3322 3562 3.456280 TGTGCATGCCAAAGTTCTTTTC 58.544 40.909 16.68 0.00 0.00 2.29
3323 3563 3.118847 TGTGCATGCCAAAGTTCTTTTCA 60.119 39.130 16.68 0.00 0.00 2.69
3324 3564 3.870419 GTGCATGCCAAAGTTCTTTTCAA 59.130 39.130 16.68 0.00 0.00 2.69
3325 3565 4.332268 GTGCATGCCAAAGTTCTTTTCAAA 59.668 37.500 16.68 0.00 0.00 2.69
3326 3566 4.332268 TGCATGCCAAAGTTCTTTTCAAAC 59.668 37.500 16.68 0.00 0.00 2.93
3327 3567 4.260743 GCATGCCAAAGTTCTTTTCAAACC 60.261 41.667 6.36 0.00 0.00 3.27
3328 3568 4.543590 TGCCAAAGTTCTTTTCAAACCA 57.456 36.364 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.890945 TGTCTGTTCTGGAGTTCGATGA 59.109 45.455 0.00 0.00 0.00 2.92
26 27 1.248785 ATAGTCGCGTGGGTGTGTCT 61.249 55.000 5.77 0.00 0.00 3.41
137 147 4.395959 AGTTTTGTCGTTCAGGAGTACA 57.604 40.909 0.00 0.00 0.00 2.90
170 180 1.121240 CGTTATCTCCGACGTCATGC 58.879 55.000 17.16 0.00 34.75 4.06
211 221 1.198713 TCAAGTGCATCTCTCCTCCC 58.801 55.000 0.00 0.00 0.00 4.30
213 223 2.433604 TCCATCAAGTGCATCTCTCCTC 59.566 50.000 0.00 0.00 0.00 3.71
222 232 0.320683 CGGTGAGTCCATCAAGTGCA 60.321 55.000 0.00 0.00 40.43 4.57
223 233 1.639298 GCGGTGAGTCCATCAAGTGC 61.639 60.000 0.00 0.00 40.43 4.40
227 237 2.264480 CGGCGGTGAGTCCATCAA 59.736 61.111 0.00 0.00 40.43 2.57
246 256 4.980805 GTTGGTGTCGGCGAGGCA 62.981 66.667 11.20 2.10 0.00 4.75
262 275 1.002773 GGTGACGTTAGGGTTCATGGT 59.997 52.381 0.00 0.00 0.00 3.55
294 307 1.153784 GGCATCATGTGTTTGCCGG 60.154 57.895 13.19 0.00 45.75 6.13
306 319 3.126858 GCGTCTCAAAGTTAATGGCATCA 59.873 43.478 0.00 0.00 0.00 3.07
320 333 0.176910 TTATCATGGCGGCGTCTCAA 59.823 50.000 14.51 0.00 0.00 3.02
383 396 3.862991 TGGTGGAAACGGCGTCCA 61.863 61.111 15.17 15.42 43.03 4.02
392 405 1.090625 CGTCGTTGTGGTGGTGGAAA 61.091 55.000 0.00 0.00 0.00 3.13
403 416 2.894240 AAGTCGTGGTGCGTCGTTGT 62.894 55.000 0.00 0.00 42.13 3.32
421 434 7.747690 TCTGTAGTTAGGGTTTGGATTTGTAA 58.252 34.615 0.00 0.00 0.00 2.41
460 473 2.288643 GCAGGAGGGAGGGGAGAT 59.711 66.667 0.00 0.00 0.00 2.75
504 521 1.903877 CTGATCAGGACGTTGGCCCT 61.904 60.000 15.38 0.00 0.00 5.19
520 537 1.186200 CTTCCACCGATCTCCACTGA 58.814 55.000 0.00 0.00 0.00 3.41
522 539 1.827969 CTTCTTCCACCGATCTCCACT 59.172 52.381 0.00 0.00 0.00 4.00
587 604 0.112412 AAAACCAATCTCGGGCTGGT 59.888 50.000 3.20 3.20 45.50 4.00
588 605 1.067635 CAAAAACCAATCTCGGGCTGG 60.068 52.381 1.92 1.92 36.24 4.85
589 606 1.067635 CCAAAAACCAATCTCGGGCTG 60.068 52.381 0.00 0.00 0.00 4.85
590 607 1.256812 CCAAAAACCAATCTCGGGCT 58.743 50.000 0.00 0.00 0.00 5.19
591 608 0.389817 GCCAAAAACCAATCTCGGGC 60.390 55.000 0.00 0.00 0.00 6.13
592 609 0.109319 CGCCAAAAACCAATCTCGGG 60.109 55.000 0.00 0.00 0.00 5.14
593 610 0.732538 GCGCCAAAAACCAATCTCGG 60.733 55.000 0.00 0.00 0.00 4.63
594 611 1.065031 CGCGCCAAAAACCAATCTCG 61.065 55.000 0.00 0.00 0.00 4.04
595 612 0.239879 TCGCGCCAAAAACCAATCTC 59.760 50.000 0.00 0.00 0.00 2.75
596 613 0.240945 CTCGCGCCAAAAACCAATCT 59.759 50.000 0.00 0.00 0.00 2.40
597 614 0.239879 TCTCGCGCCAAAAACCAATC 59.760 50.000 0.00 0.00 0.00 2.67
598 615 0.887933 ATCTCGCGCCAAAAACCAAT 59.112 45.000 0.00 0.00 0.00 3.16
599 616 1.524848 TATCTCGCGCCAAAAACCAA 58.475 45.000 0.00 0.00 0.00 3.67
600 617 1.524848 TTATCTCGCGCCAAAAACCA 58.475 45.000 0.00 0.00 0.00 3.67
601 618 2.844122 ATTATCTCGCGCCAAAAACC 57.156 45.000 0.00 0.00 0.00 3.27
602 619 4.030195 GTCAAATTATCTCGCGCCAAAAAC 59.970 41.667 0.00 0.00 0.00 2.43
603 620 4.162812 GTCAAATTATCTCGCGCCAAAAA 58.837 39.130 0.00 0.00 0.00 1.94
604 621 3.726486 CGTCAAATTATCTCGCGCCAAAA 60.726 43.478 0.00 0.00 0.00 2.44
605 622 2.222931 CGTCAAATTATCTCGCGCCAAA 60.223 45.455 0.00 0.00 0.00 3.28
606 623 1.326245 CGTCAAATTATCTCGCGCCAA 59.674 47.619 0.00 0.00 0.00 4.52
607 624 0.927537 CGTCAAATTATCTCGCGCCA 59.072 50.000 0.00 0.00 0.00 5.69
611 628 1.323534 ACACGCGTCAAATTATCTCGC 59.676 47.619 9.86 0.00 42.78 5.03
629 646 3.321111 GCGATCCTCCTATTCTTACCACA 59.679 47.826 0.00 0.00 0.00 4.17
644 661 1.260538 TGACCAAGCTGAGCGATCCT 61.261 55.000 0.00 0.00 0.00 3.24
771 809 3.617531 CGTGTGCAGGGACTAAGAAATCT 60.618 47.826 0.00 0.00 36.02 2.40
778 816 2.046009 TTGGCGTGTGCAGGGACTAA 62.046 55.000 0.00 0.00 45.35 2.24
786 833 1.268352 GAAAGGTATTTGGCGTGTGCA 59.732 47.619 0.00 0.00 45.35 4.57
805 857 6.372659 GGAGAGATTGCAAGTTTAGAACATGA 59.627 38.462 4.94 0.00 32.12 3.07
886 992 4.719273 TGTTGATGGGTTCCCTTTTTCTTT 59.281 37.500 9.43 0.00 0.00 2.52
887 993 4.294347 TGTTGATGGGTTCCCTTTTTCTT 58.706 39.130 9.43 0.00 0.00 2.52
888 994 3.922375 TGTTGATGGGTTCCCTTTTTCT 58.078 40.909 9.43 0.00 0.00 2.52
889 995 4.681074 TTGTTGATGGGTTCCCTTTTTC 57.319 40.909 9.43 2.44 0.00 2.29
896 1002 2.562298 TGCTGAATTGTTGATGGGTTCC 59.438 45.455 0.00 0.00 0.00 3.62
973 1104 1.135315 CTCTGCGTTGCGAATTGGG 59.865 57.895 0.00 0.00 0.00 4.12
974 1105 1.075542 TACTCTGCGTTGCGAATTGG 58.924 50.000 0.00 0.00 0.00 3.16
975 1106 2.873170 TTACTCTGCGTTGCGAATTG 57.127 45.000 0.00 0.00 0.00 2.32
977 1108 2.683968 TCTTTACTCTGCGTTGCGAAT 58.316 42.857 0.00 0.00 0.00 3.34
992 1128 1.404986 CGGACACGGCCATCTTCTTTA 60.405 52.381 2.24 0.00 36.18 1.85
1769 1909 3.710722 CAGCCGAGGCCAGGAACT 61.711 66.667 20.03 6.54 43.17 3.01
1805 1951 1.207811 CCAATTTGCCCTCCATGGTTC 59.792 52.381 12.58 0.10 0.00 3.62
1807 1953 0.116940 ACCAATTTGCCCTCCATGGT 59.883 50.000 12.58 0.00 36.38 3.55
1816 1968 2.126502 CGGCGACACCAATTTGCC 60.127 61.111 0.00 0.00 42.29 4.52
1823 1987 3.611674 TGCTCTTCGGCGACACCA 61.612 61.111 10.16 1.41 39.03 4.17
1851 2015 3.881688 CTGAATTCGATTCCCAGAATGCT 59.118 43.478 0.04 0.00 38.50 3.79
1867 2031 1.740380 CGCCTCATCCGTGTCTGAATT 60.740 52.381 0.00 0.00 0.00 2.17
1878 2042 3.838271 TCGTGCTCCGCCTCATCC 61.838 66.667 0.00 0.00 36.19 3.51
1881 2045 4.056125 CTGTCGTGCTCCGCCTCA 62.056 66.667 0.00 0.00 36.19 3.86
1910 2092 1.228228 GCCAATGCCCTCATCCTCA 59.772 57.895 0.00 0.00 31.27 3.86
1998 2180 3.923864 ACTGCGTCGGGTGCTTCA 61.924 61.111 0.00 0.00 0.00 3.02
2020 2202 1.339610 GGTCATCTCCTCGATCACCAG 59.660 57.143 0.00 0.00 42.41 4.00
2050 2238 2.554272 GTTTGTGATCGCGCCGTT 59.446 55.556 0.00 0.00 0.00 4.44
2054 2242 0.162933 TTCTTCGTTTGTGATCGCGC 59.837 50.000 0.00 0.00 0.00 6.86
2101 2289 2.290071 ACTCCACGTCCAAAGTAATGGG 60.290 50.000 0.00 0.00 41.05 4.00
2135 2323 4.482386 TGAATCGTCGTAGGCTATATTGC 58.518 43.478 0.00 0.00 0.00 3.56
2138 2326 5.961396 AACTGAATCGTCGTAGGCTATAT 57.039 39.130 0.00 0.00 0.00 0.86
2139 2327 5.410746 CCTAACTGAATCGTCGTAGGCTATA 59.589 44.000 0.00 0.00 0.00 1.31
2140 2328 4.215827 CCTAACTGAATCGTCGTAGGCTAT 59.784 45.833 0.00 0.00 0.00 2.97
2168 2371 5.993106 AGCTAAACACTCAAAAGACTGAC 57.007 39.130 0.00 0.00 0.00 3.51
2169 2372 5.220854 GCAAGCTAAACACTCAAAAGACTGA 60.221 40.000 0.00 0.00 0.00 3.41
2175 2378 3.488384 CGTGGCAAGCTAAACACTCAAAA 60.488 43.478 11.31 0.00 0.00 2.44
2178 2381 1.202592 TCGTGGCAAGCTAAACACTCA 60.203 47.619 11.31 0.00 0.00 3.41
2192 2395 3.386486 TCGGTACATGATAATTCGTGGC 58.614 45.455 0.00 0.00 42.22 5.01
2231 2434 5.680229 GCGAGATCATTTGCATTACTCTTTG 59.320 40.000 0.00 0.00 0.00 2.77
2237 2440 5.203370 CAAGAGCGAGATCATTTGCATTAC 58.797 41.667 0.00 0.00 0.00 1.89
2246 2449 2.277969 CTTGTGCAAGAGCGAGATCAT 58.722 47.619 6.08 0.00 46.23 2.45
2272 2475 1.419374 AGAGCAGCAGTACGAAAACG 58.581 50.000 0.00 0.00 0.00 3.60
2319 2522 5.485662 AAATTTCTTCCGCCTAATCGAAG 57.514 39.130 0.00 0.00 0.00 3.79
2325 2528 4.947388 AGCATGTAAATTTCTTCCGCCTAA 59.053 37.500 0.00 0.00 0.00 2.69
2367 2570 0.874607 CCACGCGACCTAGTATTGCC 60.875 60.000 15.93 0.00 0.00 4.52
2368 2571 1.488261 GCCACGCGACCTAGTATTGC 61.488 60.000 15.93 0.00 0.00 3.56
2372 2575 1.755395 ATGGCCACGCGACCTAGTA 60.755 57.895 15.93 0.00 0.00 1.82
2451 2660 3.431725 CCTTTCGCGGTGGAAGCC 61.432 66.667 6.13 0.00 0.00 4.35
2470 2679 0.031043 TCTTTCCGCGTCAACTCGAA 59.969 50.000 4.92 0.00 0.00 3.71
2472 2681 1.945776 GCTCTTTCCGCGTCAACTCG 61.946 60.000 4.92 0.00 0.00 4.18
2477 2686 2.738521 GCTGCTCTTTCCGCGTCA 60.739 61.111 4.92 0.00 0.00 4.35
2492 2701 2.356793 GTGAGCTGCTGTGACGCT 60.357 61.111 7.01 0.00 36.57 5.07
2519 2728 2.693267 ACTACTTTCCCAAGGATCGC 57.307 50.000 0.00 0.00 33.82 4.58
2535 2744 2.797156 GCGCGCTAGTGTAGTACTACTA 59.203 50.000 28.56 17.26 40.89 1.82
2537 2746 1.655876 CGCGCGCTAGTGTAGTACTAC 60.656 57.143 30.48 23.58 40.89 2.73
2538 2747 0.578683 CGCGCGCTAGTGTAGTACTA 59.421 55.000 30.48 0.00 40.89 1.82
2539 2748 1.351012 CGCGCGCTAGTGTAGTACT 59.649 57.895 30.48 0.00 43.56 2.73
2540 2749 1.653533 CCGCGCGCTAGTGTAGTAC 60.654 63.158 30.48 0.00 0.00 2.73
2541 2750 2.711311 CCGCGCGCTAGTGTAGTA 59.289 61.111 30.48 0.00 0.00 1.82
2542 2751 4.849329 GCCGCGCGCTAGTGTAGT 62.849 66.667 30.48 0.00 0.00 2.73
2553 2762 1.847890 TAGTTTTTGACTGGCCGCGC 61.848 55.000 0.00 0.00 39.48 6.86
2571 2780 2.224818 ACCCACGTAGCCCAACAAAATA 60.225 45.455 0.00 0.00 0.00 1.40
2572 2781 1.253100 CCCACGTAGCCCAACAAAAT 58.747 50.000 0.00 0.00 0.00 1.82
2573 2782 0.106619 ACCCACGTAGCCCAACAAAA 60.107 50.000 0.00 0.00 0.00 2.44
2574 2783 0.535553 GACCCACGTAGCCCAACAAA 60.536 55.000 0.00 0.00 0.00 2.83
2627 2836 1.597663 CGCTCACTCGTTGAAAAGGTT 59.402 47.619 0.00 0.00 32.21 3.50
2636 2845 1.801913 GATGCGACGCTCACTCGTT 60.802 57.895 22.08 0.00 43.42 3.85
2639 2848 1.875813 CAGGATGCGACGCTCACTC 60.876 63.158 22.08 11.81 0.00 3.51
2656 2865 2.041485 TGGCTGGATGAAACCAATCTCA 59.959 45.455 0.00 0.00 39.59 3.27
2661 2870 0.109532 TCGTGGCTGGATGAAACCAA 59.890 50.000 0.00 0.00 39.59 3.67
2662 2871 0.605319 GTCGTGGCTGGATGAAACCA 60.605 55.000 0.00 0.00 38.33 3.67
2665 2874 1.375396 CGGTCGTGGCTGGATGAAA 60.375 57.895 0.00 0.00 0.00 2.69
2823 3063 9.535878 AACCGAATTTCAGTTAAGCAATAAAAA 57.464 25.926 0.00 0.00 0.00 1.94
2828 3068 9.705290 ATTTTAACCGAATTTCAGTTAAGCAAT 57.295 25.926 14.43 11.11 37.30 3.56
2829 3069 9.535878 AATTTTAACCGAATTTCAGTTAAGCAA 57.464 25.926 14.43 9.79 37.30 3.91
2833 3073 9.628746 GGCTAATTTTAACCGAATTTCAGTTAA 57.371 29.630 11.98 11.98 34.92 2.01
2834 3074 8.794553 TGGCTAATTTTAACCGAATTTCAGTTA 58.205 29.630 1.86 1.86 0.00 2.24
2835 3075 7.662897 TGGCTAATTTTAACCGAATTTCAGTT 58.337 30.769 3.65 3.65 0.00 3.16
2836 3076 7.222000 TGGCTAATTTTAACCGAATTTCAGT 57.778 32.000 0.00 0.00 0.00 3.41
2837 3077 7.973388 TCATGGCTAATTTTAACCGAATTTCAG 59.027 33.333 0.00 0.00 0.00 3.02
2838 3078 7.831753 TCATGGCTAATTTTAACCGAATTTCA 58.168 30.769 0.00 0.00 0.00 2.69
2839 3079 7.435192 CCTCATGGCTAATTTTAACCGAATTTC 59.565 37.037 0.00 0.00 0.00 2.17
2840 3080 7.264947 CCTCATGGCTAATTTTAACCGAATTT 58.735 34.615 0.00 0.00 0.00 1.82
2841 3081 6.805713 CCTCATGGCTAATTTTAACCGAATT 58.194 36.000 0.00 0.00 0.00 2.17
2842 3082 6.391227 CCTCATGGCTAATTTTAACCGAAT 57.609 37.500 0.00 0.00 0.00 3.34
2843 3083 5.828299 CCTCATGGCTAATTTTAACCGAA 57.172 39.130 0.00 0.00 0.00 4.30
2858 3098 1.825090 TGTTGTTAGCAGCCTCATGG 58.175 50.000 0.00 0.00 0.00 3.66
2859 3099 4.445452 AAATGTTGTTAGCAGCCTCATG 57.555 40.909 0.00 0.00 0.00 3.07
2860 3100 5.500234 TCTAAATGTTGTTAGCAGCCTCAT 58.500 37.500 0.00 0.00 32.13 2.90
2861 3101 4.905429 TCTAAATGTTGTTAGCAGCCTCA 58.095 39.130 0.00 0.00 32.13 3.86
2862 3102 5.880054 TTCTAAATGTTGTTAGCAGCCTC 57.120 39.130 0.00 0.00 32.13 4.70
2863 3103 5.048013 GGTTTCTAAATGTTGTTAGCAGCCT 60.048 40.000 0.00 0.00 29.27 4.58
2864 3104 5.161358 GGTTTCTAAATGTTGTTAGCAGCC 58.839 41.667 0.00 0.00 32.13 4.85
2865 3105 5.768317 TGGTTTCTAAATGTTGTTAGCAGC 58.232 37.500 0.00 0.00 32.13 5.25
2866 3106 7.029563 GGATGGTTTCTAAATGTTGTTAGCAG 58.970 38.462 0.00 0.00 32.13 4.24
2867 3107 6.491745 TGGATGGTTTCTAAATGTTGTTAGCA 59.508 34.615 0.00 0.00 32.13 3.49
2868 3108 6.919721 TGGATGGTTTCTAAATGTTGTTAGC 58.080 36.000 0.00 0.00 32.13 3.09
2869 3109 7.538575 CCTGGATGGTTTCTAAATGTTGTTAG 58.461 38.462 0.00 0.00 33.16 2.34
2870 3110 7.461182 CCTGGATGGTTTCTAAATGTTGTTA 57.539 36.000 0.00 0.00 0.00 2.41
2871 3111 6.345096 CCTGGATGGTTTCTAAATGTTGTT 57.655 37.500 0.00 0.00 0.00 2.83
2872 3112 5.982890 CCTGGATGGTTTCTAAATGTTGT 57.017 39.130 0.00 0.00 0.00 3.32
2886 3126 3.696045 TGAATTTGTACCACCTGGATGG 58.304 45.455 0.00 7.24 46.10 3.51
2887 3127 3.696051 CCTGAATTTGTACCACCTGGATG 59.304 47.826 0.00 0.00 38.94 3.51
2888 3128 3.309121 CCCTGAATTTGTACCACCTGGAT 60.309 47.826 0.00 0.00 38.94 3.41
2889 3129 2.041081 CCCTGAATTTGTACCACCTGGA 59.959 50.000 0.00 0.00 38.94 3.86
2890 3130 2.446435 CCCTGAATTTGTACCACCTGG 58.554 52.381 0.00 0.00 42.17 4.45
2891 3131 1.818674 GCCCTGAATTTGTACCACCTG 59.181 52.381 0.00 0.00 0.00 4.00
2892 3132 1.427368 TGCCCTGAATTTGTACCACCT 59.573 47.619 0.00 0.00 0.00 4.00
2893 3133 1.818674 CTGCCCTGAATTTGTACCACC 59.181 52.381 0.00 0.00 0.00 4.61
2894 3134 2.228822 CACTGCCCTGAATTTGTACCAC 59.771 50.000 0.00 0.00 0.00 4.16
2895 3135 2.513753 CACTGCCCTGAATTTGTACCA 58.486 47.619 0.00 0.00 0.00 3.25
2896 3136 1.202348 GCACTGCCCTGAATTTGTACC 59.798 52.381 0.00 0.00 0.00 3.34
2897 3137 1.885887 TGCACTGCCCTGAATTTGTAC 59.114 47.619 0.00 0.00 0.00 2.90
2898 3138 2.161855 CTGCACTGCCCTGAATTTGTA 58.838 47.619 0.00 0.00 0.00 2.41
2899 3139 0.963962 CTGCACTGCCCTGAATTTGT 59.036 50.000 0.00 0.00 0.00 2.83
2900 3140 1.250328 TCTGCACTGCCCTGAATTTG 58.750 50.000 0.00 0.00 0.00 2.32
2901 3141 2.226962 ATCTGCACTGCCCTGAATTT 57.773 45.000 0.00 0.00 0.00 1.82
2902 3142 3.117776 TGATATCTGCACTGCCCTGAATT 60.118 43.478 3.98 0.00 0.00 2.17
2903 3143 2.440627 TGATATCTGCACTGCCCTGAAT 59.559 45.455 3.98 0.00 0.00 2.57
2904 3144 1.839354 TGATATCTGCACTGCCCTGAA 59.161 47.619 3.98 0.00 0.00 3.02
2905 3145 1.499368 TGATATCTGCACTGCCCTGA 58.501 50.000 3.98 0.00 0.00 3.86
2906 3146 2.152016 CATGATATCTGCACTGCCCTG 58.848 52.381 3.98 0.00 0.00 4.45
2907 3147 1.544982 GCATGATATCTGCACTGCCCT 60.545 52.381 17.16 0.00 39.46 5.19
2908 3148 0.879765 GCATGATATCTGCACTGCCC 59.120 55.000 17.16 0.00 39.46 5.36
2909 3149 1.601166 TGCATGATATCTGCACTGCC 58.399 50.000 19.49 3.35 44.30 4.85
2923 3163 9.398170 GCAAGGTAATTATTACAGTTATGCATG 57.602 33.333 15.80 0.00 37.88 4.06
2924 3164 9.130661 TGCAAGGTAATTATTACAGTTATGCAT 57.869 29.630 15.80 3.79 37.88 3.96
2925 3165 8.512966 TGCAAGGTAATTATTACAGTTATGCA 57.487 30.769 15.80 17.56 37.88 3.96
2926 3166 9.612620 GATGCAAGGTAATTATTACAGTTATGC 57.387 33.333 15.80 15.77 37.88 3.14
2936 3176 9.289782 GGAACTGATAGATGCAAGGTAATTATT 57.710 33.333 0.00 0.00 0.00 1.40
2937 3177 8.439971 TGGAACTGATAGATGCAAGGTAATTAT 58.560 33.333 0.00 0.00 0.00 1.28
2938 3178 7.801104 TGGAACTGATAGATGCAAGGTAATTA 58.199 34.615 0.00 0.00 0.00 1.40
2939 3179 6.662755 TGGAACTGATAGATGCAAGGTAATT 58.337 36.000 0.00 0.00 0.00 1.40
2940 3180 6.252599 TGGAACTGATAGATGCAAGGTAAT 57.747 37.500 0.00 0.00 0.00 1.89
2941 3181 5.692115 TGGAACTGATAGATGCAAGGTAA 57.308 39.130 0.00 0.00 0.00 2.85
2942 3182 5.692115 TTGGAACTGATAGATGCAAGGTA 57.308 39.130 0.00 0.00 0.00 3.08
2943 3183 4.574674 TTGGAACTGATAGATGCAAGGT 57.425 40.909 0.00 0.00 0.00 3.50
2944 3184 7.067372 TGTTATTTGGAACTGATAGATGCAAGG 59.933 37.037 0.00 0.00 30.90 3.61
2945 3185 7.988737 TGTTATTTGGAACTGATAGATGCAAG 58.011 34.615 0.00 0.00 30.90 4.01
2946 3186 7.936496 TGTTATTTGGAACTGATAGATGCAA 57.064 32.000 0.00 0.00 0.00 4.08
2947 3187 8.523915 AATGTTATTTGGAACTGATAGATGCA 57.476 30.769 0.00 0.00 0.00 3.96
2948 3188 9.807649 AAAATGTTATTTGGAACTGATAGATGC 57.192 29.630 0.00 0.00 0.00 3.91
2954 3194 9.480053 CAAGACAAAATGTTATTTGGAACTGAT 57.520 29.630 4.96 0.00 43.10 2.90
2955 3195 8.474025 ACAAGACAAAATGTTATTTGGAACTGA 58.526 29.630 4.96 0.00 43.10 3.41
2956 3196 8.647143 ACAAGACAAAATGTTATTTGGAACTG 57.353 30.769 4.96 0.35 43.10 3.16
2964 3204 9.180678 CGCTCTTTTACAAGACAAAATGTTATT 57.819 29.630 0.00 0.00 33.80 1.40
2965 3205 7.807907 CCGCTCTTTTACAAGACAAAATGTTAT 59.192 33.333 0.00 0.00 33.80 1.89
2966 3206 7.136119 CCGCTCTTTTACAAGACAAAATGTTA 58.864 34.615 0.00 0.00 33.80 2.41
2967 3207 5.977129 CCGCTCTTTTACAAGACAAAATGTT 59.023 36.000 0.00 0.00 33.80 2.71
2968 3208 5.067283 ACCGCTCTTTTACAAGACAAAATGT 59.933 36.000 0.00 0.00 33.80 2.71
2969 3209 5.519722 ACCGCTCTTTTACAAGACAAAATG 58.480 37.500 0.00 0.00 33.80 2.32
2970 3210 5.278315 GGACCGCTCTTTTACAAGACAAAAT 60.278 40.000 0.00 0.00 33.80 1.82
2971 3211 4.035909 GGACCGCTCTTTTACAAGACAAAA 59.964 41.667 0.00 0.00 33.80 2.44
2972 3212 3.562557 GGACCGCTCTTTTACAAGACAAA 59.437 43.478 0.00 0.00 33.80 2.83
2973 3213 3.135994 GGACCGCTCTTTTACAAGACAA 58.864 45.455 0.00 0.00 33.80 3.18
2974 3214 2.103432 TGGACCGCTCTTTTACAAGACA 59.897 45.455 0.00 0.00 33.80 3.41
2975 3215 2.479275 GTGGACCGCTCTTTTACAAGAC 59.521 50.000 0.00 0.00 33.80 3.01
2976 3216 2.103432 TGTGGACCGCTCTTTTACAAGA 59.897 45.455 6.60 0.00 36.62 3.02
2977 3217 2.489971 TGTGGACCGCTCTTTTACAAG 58.510 47.619 6.60 0.00 0.00 3.16
2978 3218 2.614983 GTTGTGGACCGCTCTTTTACAA 59.385 45.455 6.60 0.00 0.00 2.41
2979 3219 2.215196 GTTGTGGACCGCTCTTTTACA 58.785 47.619 6.60 0.00 0.00 2.41
2980 3220 2.215196 TGTTGTGGACCGCTCTTTTAC 58.785 47.619 6.60 0.00 0.00 2.01
2981 3221 2.158871 ACTGTTGTGGACCGCTCTTTTA 60.159 45.455 6.60 0.00 0.00 1.52
2982 3222 1.308998 CTGTTGTGGACCGCTCTTTT 58.691 50.000 6.60 0.00 0.00 2.27
2983 3223 0.180406 ACTGTTGTGGACCGCTCTTT 59.820 50.000 6.60 0.00 0.00 2.52
2984 3224 0.180406 AACTGTTGTGGACCGCTCTT 59.820 50.000 6.60 0.00 0.00 2.85
2985 3225 0.180406 AAACTGTTGTGGACCGCTCT 59.820 50.000 6.60 0.00 0.00 4.09
2986 3226 0.586802 GAAACTGTTGTGGACCGCTC 59.413 55.000 6.60 0.47 0.00 5.03
2987 3227 0.180406 AGAAACTGTTGTGGACCGCT 59.820 50.000 6.60 0.00 0.00 5.52
2988 3228 0.586802 GAGAAACTGTTGTGGACCGC 59.413 55.000 0.00 0.00 0.00 5.68
2989 3229 1.597663 GTGAGAAACTGTTGTGGACCG 59.402 52.381 0.00 0.00 0.00 4.79
2990 3230 2.639065 TGTGAGAAACTGTTGTGGACC 58.361 47.619 0.00 0.00 0.00 4.46
2991 3231 3.627577 ACATGTGAGAAACTGTTGTGGAC 59.372 43.478 0.00 0.00 0.00 4.02
2992 3232 3.884895 ACATGTGAGAAACTGTTGTGGA 58.115 40.909 0.00 0.00 0.00 4.02
2993 3233 4.096231 TCAACATGTGAGAAACTGTTGTGG 59.904 41.667 0.00 0.00 42.40 4.17
2994 3234 5.233957 TCAACATGTGAGAAACTGTTGTG 57.766 39.130 0.00 0.00 42.40 3.33
2995 3235 5.415701 ACTTCAACATGTGAGAAACTGTTGT 59.584 36.000 13.16 5.91 42.40 3.32
2996 3236 5.883661 ACTTCAACATGTGAGAAACTGTTG 58.116 37.500 13.16 7.72 42.74 3.33
2997 3237 5.882557 AGACTTCAACATGTGAGAAACTGTT 59.117 36.000 13.16 0.00 37.61 3.16
2998 3238 5.431765 AGACTTCAACATGTGAGAAACTGT 58.568 37.500 13.16 8.95 37.61 3.55
2999 3239 5.049818 GGAGACTTCAACATGTGAGAAACTG 60.050 44.000 17.14 5.61 37.61 3.16
3000 3240 5.059833 GGAGACTTCAACATGTGAGAAACT 58.940 41.667 13.16 13.89 37.61 2.66
3001 3241 4.816385 TGGAGACTTCAACATGTGAGAAAC 59.184 41.667 13.16 10.63 37.61 2.78
3002 3242 5.034852 TGGAGACTTCAACATGTGAGAAA 57.965 39.130 13.16 0.43 37.61 2.52
3003 3243 4.687901 TGGAGACTTCAACATGTGAGAA 57.312 40.909 0.00 6.47 37.61 2.87
3004 3244 4.687901 TTGGAGACTTCAACATGTGAGA 57.312 40.909 0.00 0.00 37.61 3.27
3005 3245 4.758674 ACATTGGAGACTTCAACATGTGAG 59.241 41.667 0.00 0.53 37.61 3.51
3006 3246 4.516321 CACATTGGAGACTTCAACATGTGA 59.484 41.667 19.36 0.00 38.02 3.58
3007 3247 4.516321 TCACATTGGAGACTTCAACATGTG 59.484 41.667 18.50 18.50 37.60 3.21
3008 3248 4.717877 TCACATTGGAGACTTCAACATGT 58.282 39.130 0.00 0.00 0.00 3.21
3009 3249 5.892160 ATCACATTGGAGACTTCAACATG 57.108 39.130 0.00 0.50 0.00 3.21
3010 3250 5.336213 GCAATCACATTGGAGACTTCAACAT 60.336 40.000 0.00 0.00 40.57 2.71
3011 3251 4.022935 GCAATCACATTGGAGACTTCAACA 60.023 41.667 0.00 0.00 40.57 3.33
3012 3252 4.217118 AGCAATCACATTGGAGACTTCAAC 59.783 41.667 0.00 0.00 40.57 3.18
3013 3253 4.401022 AGCAATCACATTGGAGACTTCAA 58.599 39.130 0.00 0.00 40.57 2.69
3014 3254 4.025040 AGCAATCACATTGGAGACTTCA 57.975 40.909 0.00 0.00 40.57 3.02
3015 3255 4.142513 GGAAGCAATCACATTGGAGACTTC 60.143 45.833 0.00 0.00 40.57 3.01
3016 3256 3.760684 GGAAGCAATCACATTGGAGACTT 59.239 43.478 0.00 0.00 40.57 3.01
3017 3257 3.009916 AGGAAGCAATCACATTGGAGACT 59.990 43.478 0.00 0.00 40.57 3.24
3018 3258 3.350833 AGGAAGCAATCACATTGGAGAC 58.649 45.455 0.00 0.00 40.57 3.36
3019 3259 3.265221 AGAGGAAGCAATCACATTGGAGA 59.735 43.478 0.00 0.00 40.57 3.71
3020 3260 3.618351 AGAGGAAGCAATCACATTGGAG 58.382 45.455 0.00 0.00 40.57 3.86
3021 3261 3.726557 AGAGGAAGCAATCACATTGGA 57.273 42.857 0.00 0.00 40.57 3.53
3022 3262 4.774124 TCTAGAGGAAGCAATCACATTGG 58.226 43.478 0.00 0.00 40.57 3.16
3023 3263 4.272991 GCTCTAGAGGAAGCAATCACATTG 59.727 45.833 21.23 0.00 43.06 2.82
3024 3264 4.080695 TGCTCTAGAGGAAGCAATCACATT 60.081 41.667 21.23 0.00 34.08 2.71
3025 3265 3.453717 TGCTCTAGAGGAAGCAATCACAT 59.546 43.478 21.23 0.00 34.08 3.21
3026 3266 2.833943 TGCTCTAGAGGAAGCAATCACA 59.166 45.455 21.23 3.78 34.08 3.58
3027 3267 3.533606 TGCTCTAGAGGAAGCAATCAC 57.466 47.619 21.23 1.13 34.08 3.06
3028 3268 5.541484 TCATATGCTCTAGAGGAAGCAATCA 59.459 40.000 18.58 6.48 40.82 2.57
3029 3269 5.868801 GTCATATGCTCTAGAGGAAGCAATC 59.131 44.000 18.58 4.33 40.82 2.67
3030 3270 5.566429 CGTCATATGCTCTAGAGGAAGCAAT 60.566 44.000 18.58 3.78 40.82 3.56
3031 3271 4.261783 CGTCATATGCTCTAGAGGAAGCAA 60.262 45.833 18.58 4.88 40.82 3.91
3032 3272 3.254411 CGTCATATGCTCTAGAGGAAGCA 59.746 47.826 18.58 12.29 41.73 3.91
3033 3273 3.832276 CGTCATATGCTCTAGAGGAAGC 58.168 50.000 18.58 6.39 30.94 3.86
3034 3274 3.505680 AGCGTCATATGCTCTAGAGGAAG 59.494 47.826 18.58 11.12 34.99 3.46
3035 3275 3.491342 AGCGTCATATGCTCTAGAGGAA 58.509 45.455 18.58 8.16 34.99 3.36
3036 3276 3.147553 AGCGTCATATGCTCTAGAGGA 57.852 47.619 21.23 19.21 34.99 3.71
3044 3284 1.006805 GGAGCGAGCGTCATATGCT 60.007 57.895 0.00 0.00 44.42 3.79
3045 3285 2.368105 CGGAGCGAGCGTCATATGC 61.368 63.158 0.00 0.00 0.00 3.14
3046 3286 0.727457 CTCGGAGCGAGCGTCATATG 60.727 60.000 0.00 0.00 46.75 1.78
3047 3287 1.576920 CTCGGAGCGAGCGTCATAT 59.423 57.895 0.00 0.00 46.75 1.78
3048 3288 3.023118 CTCGGAGCGAGCGTCATA 58.977 61.111 0.00 0.00 46.75 2.15
3056 3296 1.285950 CTGTTGTGACTCGGAGCGA 59.714 57.895 4.58 0.00 0.00 4.93
3057 3297 2.375766 GCTGTTGTGACTCGGAGCG 61.376 63.158 4.58 0.00 0.00 5.03
3058 3298 1.300931 TGCTGTTGTGACTCGGAGC 60.301 57.895 4.58 0.00 0.00 4.70
3059 3299 0.946221 GGTGCTGTTGTGACTCGGAG 60.946 60.000 2.83 2.83 0.00 4.63
3060 3300 1.069090 GGTGCTGTTGTGACTCGGA 59.931 57.895 0.00 0.00 0.00 4.55
3061 3301 0.813610 TTGGTGCTGTTGTGACTCGG 60.814 55.000 0.00 0.00 0.00 4.63
3062 3302 0.583438 CTTGGTGCTGTTGTGACTCG 59.417 55.000 0.00 0.00 0.00 4.18
3063 3303 0.947244 CCTTGGTGCTGTTGTGACTC 59.053 55.000 0.00 0.00 0.00 3.36
3064 3304 0.546122 TCCTTGGTGCTGTTGTGACT 59.454 50.000 0.00 0.00 0.00 3.41
3065 3305 1.267806 CATCCTTGGTGCTGTTGTGAC 59.732 52.381 0.00 0.00 0.00 3.67
3066 3306 1.142667 TCATCCTTGGTGCTGTTGTGA 59.857 47.619 0.00 0.00 0.00 3.58
3067 3307 1.608055 TCATCCTTGGTGCTGTTGTG 58.392 50.000 0.00 0.00 0.00 3.33
3068 3308 2.592102 ATCATCCTTGGTGCTGTTGT 57.408 45.000 0.00 0.00 0.00 3.32
3069 3309 3.947910 AAATCATCCTTGGTGCTGTTG 57.052 42.857 0.00 0.00 0.00 3.33
3070 3310 4.832266 TGTAAAATCATCCTTGGTGCTGTT 59.168 37.500 0.00 0.00 0.00 3.16
3071 3311 4.406456 TGTAAAATCATCCTTGGTGCTGT 58.594 39.130 0.00 0.00 0.00 4.40
3072 3312 5.389859 TTGTAAAATCATCCTTGGTGCTG 57.610 39.130 0.00 0.00 0.00 4.41
3073 3313 7.902920 ATATTGTAAAATCATCCTTGGTGCT 57.097 32.000 0.00 0.00 0.00 4.40
3090 3330 9.899661 ACTACAGCTTTGGTGAATTATATTGTA 57.100 29.630 3.70 0.00 34.87 2.41
3091 3331 8.807948 ACTACAGCTTTGGTGAATTATATTGT 57.192 30.769 3.70 0.00 34.87 2.71
3098 3338 7.711339 GCTATACTACTACAGCTTTGGTGAATT 59.289 37.037 0.00 0.00 34.87 2.17
3099 3339 7.210873 GCTATACTACTACAGCTTTGGTGAAT 58.789 38.462 0.00 0.00 34.87 2.57
3100 3340 6.406624 GGCTATACTACTACAGCTTTGGTGAA 60.407 42.308 0.00 0.00 34.87 3.18
3101 3341 5.068723 GGCTATACTACTACAGCTTTGGTGA 59.931 44.000 0.00 0.00 34.87 4.02
3102 3342 5.069251 AGGCTATACTACTACAGCTTTGGTG 59.931 44.000 0.00 0.00 37.06 4.17
3103 3343 5.209659 AGGCTATACTACTACAGCTTTGGT 58.790 41.667 0.00 0.00 34.41 3.67
3104 3344 5.536916 AGAGGCTATACTACTACAGCTTTGG 59.463 44.000 0.00 0.00 34.41 3.28
3105 3345 6.566942 CGAGAGGCTATACTACTACAGCTTTG 60.567 46.154 0.00 0.00 34.41 2.77
3106 3346 5.470777 CGAGAGGCTATACTACTACAGCTTT 59.529 44.000 0.00 0.00 34.41 3.51
3107 3347 4.998672 CGAGAGGCTATACTACTACAGCTT 59.001 45.833 0.00 0.00 34.41 3.74
3108 3348 4.040706 ACGAGAGGCTATACTACTACAGCT 59.959 45.833 0.00 0.00 34.41 4.24
3109 3349 4.152759 CACGAGAGGCTATACTACTACAGC 59.847 50.000 0.00 0.00 0.00 4.40
3110 3350 5.299148 ACACGAGAGGCTATACTACTACAG 58.701 45.833 0.00 0.00 0.00 2.74
3111 3351 5.163374 TGACACGAGAGGCTATACTACTACA 60.163 44.000 0.00 0.00 0.00 2.74
3112 3352 5.295950 TGACACGAGAGGCTATACTACTAC 58.704 45.833 0.00 0.00 0.00 2.73
3113 3353 5.541953 TGACACGAGAGGCTATACTACTA 57.458 43.478 0.00 0.00 0.00 1.82
3114 3354 4.418973 TGACACGAGAGGCTATACTACT 57.581 45.455 0.00 0.00 0.00 2.57
3115 3355 4.575645 ACTTGACACGAGAGGCTATACTAC 59.424 45.833 0.00 0.00 0.00 2.73
3116 3356 4.575236 CACTTGACACGAGAGGCTATACTA 59.425 45.833 0.00 0.00 0.00 1.82
3117 3357 3.378742 CACTTGACACGAGAGGCTATACT 59.621 47.826 0.00 0.00 0.00 2.12
3118 3358 3.377485 TCACTTGACACGAGAGGCTATAC 59.623 47.826 0.00 0.00 0.00 1.47
3119 3359 3.377485 GTCACTTGACACGAGAGGCTATA 59.623 47.826 4.43 0.00 44.18 1.31
3120 3360 2.164624 GTCACTTGACACGAGAGGCTAT 59.835 50.000 4.43 0.00 44.18 2.97
3121 3361 1.540267 GTCACTTGACACGAGAGGCTA 59.460 52.381 4.43 0.00 44.18 3.93
3122 3362 0.315568 GTCACTTGACACGAGAGGCT 59.684 55.000 4.43 0.00 44.18 4.58
3123 3363 2.815722 GTCACTTGACACGAGAGGC 58.184 57.895 4.43 0.00 44.18 4.70
3132 3372 8.641499 TTTAAAAATCATTGGTGTCACTTGAC 57.359 30.769 2.35 2.19 44.97 3.18
3133 3373 9.658799 TTTTTAAAAATCATTGGTGTCACTTGA 57.341 25.926 9.31 4.81 0.00 3.02
3192 3432 8.908786 TTTATGGCAATGGTGTCAATTAAAAA 57.091 26.923 0.00 0.00 44.11 1.94
3193 3433 7.118971 GCTTTATGGCAATGGTGTCAATTAAAA 59.881 33.333 0.00 0.00 44.11 1.52
3194 3434 6.593382 GCTTTATGGCAATGGTGTCAATTAAA 59.407 34.615 0.00 0.00 44.11 1.52
3195 3435 6.070881 AGCTTTATGGCAATGGTGTCAATTAA 60.071 34.615 0.00 0.00 44.11 1.40
3196 3436 5.421693 AGCTTTATGGCAATGGTGTCAATTA 59.578 36.000 0.00 0.00 44.11 1.40
3197 3437 4.223477 AGCTTTATGGCAATGGTGTCAATT 59.777 37.500 0.00 0.00 44.11 2.32
3198 3438 3.770933 AGCTTTATGGCAATGGTGTCAAT 59.229 39.130 0.00 0.00 44.11 2.57
3199 3439 3.056678 CAGCTTTATGGCAATGGTGTCAA 60.057 43.478 0.00 0.00 44.11 3.18
3200 3440 2.492881 CAGCTTTATGGCAATGGTGTCA 59.507 45.455 0.00 0.00 45.26 3.58
3201 3441 2.754552 TCAGCTTTATGGCAATGGTGTC 59.245 45.455 0.00 0.00 34.17 3.67
3202 3442 2.806434 TCAGCTTTATGGCAATGGTGT 58.194 42.857 0.00 0.00 34.17 4.16
3203 3443 3.243636 GGATCAGCTTTATGGCAATGGTG 60.244 47.826 0.00 0.00 34.17 4.17
3204 3444 2.961062 GGATCAGCTTTATGGCAATGGT 59.039 45.455 0.00 0.00 34.17 3.55
3205 3445 2.298163 GGGATCAGCTTTATGGCAATGG 59.702 50.000 0.00 0.00 34.17 3.16
3206 3446 2.960384 TGGGATCAGCTTTATGGCAATG 59.040 45.455 0.00 0.00 34.17 2.82
3207 3447 3.317455 TGGGATCAGCTTTATGGCAAT 57.683 42.857 0.00 0.00 34.17 3.56
3208 3448 2.824689 TGGGATCAGCTTTATGGCAA 57.175 45.000 0.00 0.00 34.17 4.52
3209 3449 2.811504 CGATGGGATCAGCTTTATGGCA 60.812 50.000 0.00 0.00 34.17 4.92
3210 3450 1.808945 CGATGGGATCAGCTTTATGGC 59.191 52.381 0.00 0.00 0.00 4.40
3211 3451 2.038952 TCCGATGGGATCAGCTTTATGG 59.961 50.000 0.00 0.00 37.43 2.74
3212 3452 3.407424 TCCGATGGGATCAGCTTTATG 57.593 47.619 0.00 0.00 37.43 1.90
3224 3464 2.843701 CAGGAAAAGAGATCCGATGGG 58.156 52.381 0.00 0.00 42.03 4.00
3225 3465 2.158842 AGCAGGAAAAGAGATCCGATGG 60.159 50.000 0.00 0.00 42.03 3.51
3226 3466 3.191078 AGCAGGAAAAGAGATCCGATG 57.809 47.619 0.00 0.00 42.03 3.84
3227 3467 3.198635 TGAAGCAGGAAAAGAGATCCGAT 59.801 43.478 0.00 0.00 42.03 4.18
3228 3468 2.567169 TGAAGCAGGAAAAGAGATCCGA 59.433 45.455 0.00 0.00 42.03 4.55
3229 3469 2.675348 GTGAAGCAGGAAAAGAGATCCG 59.325 50.000 0.00 0.00 42.03 4.18
3230 3470 3.013219 GGTGAAGCAGGAAAAGAGATCC 58.987 50.000 0.00 0.00 37.22 3.36
3231 3471 3.013219 GGGTGAAGCAGGAAAAGAGATC 58.987 50.000 0.00 0.00 0.00 2.75
3232 3472 2.376518 TGGGTGAAGCAGGAAAAGAGAT 59.623 45.455 0.00 0.00 0.00 2.75
3233 3473 1.774254 TGGGTGAAGCAGGAAAAGAGA 59.226 47.619 0.00 0.00 0.00 3.10
3234 3474 2.276732 TGGGTGAAGCAGGAAAAGAG 57.723 50.000 0.00 0.00 0.00 2.85
3235 3475 2.108075 TCATGGGTGAAGCAGGAAAAGA 59.892 45.455 0.00 0.00 0.00 2.52
3236 3476 2.517959 TCATGGGTGAAGCAGGAAAAG 58.482 47.619 0.00 0.00 0.00 2.27
3237 3477 2.627699 GTTCATGGGTGAAGCAGGAAAA 59.372 45.455 0.00 0.00 44.58 2.29
3238 3478 2.238521 GTTCATGGGTGAAGCAGGAAA 58.761 47.619 0.00 0.00 44.58 3.13
3239 3479 1.144708 TGTTCATGGGTGAAGCAGGAA 59.855 47.619 0.00 0.00 44.58 3.36
3240 3480 0.770499 TGTTCATGGGTGAAGCAGGA 59.230 50.000 0.00 0.00 44.58 3.86
3241 3481 1.171308 CTGTTCATGGGTGAAGCAGG 58.829 55.000 0.00 0.00 44.58 4.85
3242 3482 1.171308 CCTGTTCATGGGTGAAGCAG 58.829 55.000 0.00 10.81 44.58 4.24
3243 3483 0.251297 CCCTGTTCATGGGTGAAGCA 60.251 55.000 0.00 0.00 44.58 3.91
3244 3484 0.038166 TCCCTGTTCATGGGTGAAGC 59.962 55.000 0.00 0.00 44.58 3.86
3245 3485 2.372264 CATCCCTGTTCATGGGTGAAG 58.628 52.381 1.98 0.00 44.58 3.02
3246 3486 1.616725 GCATCCCTGTTCATGGGTGAA 60.617 52.381 10.69 0.00 44.84 3.18
3247 3487 0.034186 GCATCCCTGTTCATGGGTGA 60.034 55.000 10.69 0.00 44.84 4.02
3248 3488 1.039233 GGCATCCCTGTTCATGGGTG 61.039 60.000 3.57 3.57 44.84 4.61
3249 3489 1.307647 GGCATCCCTGTTCATGGGT 59.692 57.895 0.00 0.00 44.84 4.51
3250 3490 1.456331 GGGCATCCCTGTTCATGGG 60.456 63.158 0.00 0.00 45.90 4.00
3251 3491 4.265206 GGGCATCCCTGTTCATGG 57.735 61.111 0.00 0.00 41.34 3.66
3260 3500 1.073199 CGGTAATCCAGGGCATCCC 59.927 63.158 0.00 0.00 45.90 3.85
3261 3501 0.693049 ATCGGTAATCCAGGGCATCC 59.307 55.000 0.00 0.00 0.00 3.51
3262 3502 2.568623 AATCGGTAATCCAGGGCATC 57.431 50.000 0.00 0.00 0.00 3.91
3263 3503 3.248024 TCTAATCGGTAATCCAGGGCAT 58.752 45.455 0.00 0.00 0.00 4.40
3264 3504 2.684943 TCTAATCGGTAATCCAGGGCA 58.315 47.619 0.00 0.00 0.00 5.36
3265 3505 3.181458 TGTTCTAATCGGTAATCCAGGGC 60.181 47.826 0.00 0.00 0.00 5.19
3266 3506 4.101119 ACTGTTCTAATCGGTAATCCAGGG 59.899 45.833 0.00 0.00 0.00 4.45
3267 3507 5.277857 ACTGTTCTAATCGGTAATCCAGG 57.722 43.478 0.00 0.00 0.00 4.45
3268 3508 7.040473 AGTACTGTTCTAATCGGTAATCCAG 57.960 40.000 0.00 0.00 0.00 3.86
3269 3509 7.123098 TGAAGTACTGTTCTAATCGGTAATCCA 59.877 37.037 0.00 0.00 0.00 3.41
3270 3510 7.434602 GTGAAGTACTGTTCTAATCGGTAATCC 59.565 40.741 0.00 0.00 0.00 3.01
3271 3511 7.165483 CGTGAAGTACTGTTCTAATCGGTAATC 59.835 40.741 0.00 0.00 0.00 1.75
3272 3512 6.971184 CGTGAAGTACTGTTCTAATCGGTAAT 59.029 38.462 0.00 0.00 0.00 1.89
3273 3513 6.317088 CGTGAAGTACTGTTCTAATCGGTAA 58.683 40.000 0.00 0.00 0.00 2.85
3274 3514 5.674569 GCGTGAAGTACTGTTCTAATCGGTA 60.675 44.000 0.00 0.00 0.00 4.02
3275 3515 4.730657 CGTGAAGTACTGTTCTAATCGGT 58.269 43.478 0.00 0.00 0.00 4.69
3276 3516 3.546670 GCGTGAAGTACTGTTCTAATCGG 59.453 47.826 0.00 0.00 0.00 4.18
3277 3517 3.546670 GGCGTGAAGTACTGTTCTAATCG 59.453 47.826 0.00 0.00 0.00 3.34
3278 3518 3.864003 GGGCGTGAAGTACTGTTCTAATC 59.136 47.826 0.00 0.00 0.00 1.75
3279 3519 3.514309 AGGGCGTGAAGTACTGTTCTAAT 59.486 43.478 0.00 0.00 0.00 1.73
3280 3520 2.895404 AGGGCGTGAAGTACTGTTCTAA 59.105 45.455 0.00 0.00 0.00 2.10
3281 3521 2.230508 CAGGGCGTGAAGTACTGTTCTA 59.769 50.000 0.00 0.00 0.00 2.10
3282 3522 1.000955 CAGGGCGTGAAGTACTGTTCT 59.999 52.381 0.00 0.00 0.00 3.01
3283 3523 1.270147 ACAGGGCGTGAAGTACTGTTC 60.270 52.381 14.98 0.00 39.16 3.18
3284 3524 0.756903 ACAGGGCGTGAAGTACTGTT 59.243 50.000 14.98 0.00 39.16 3.16
3285 3525 2.437625 ACAGGGCGTGAAGTACTGT 58.562 52.632 14.98 0.00 37.55 3.55
3297 3537 2.103339 AACTTTGGCATGCACAGGGC 62.103 55.000 21.36 1.51 45.13 5.19
3298 3538 0.037975 GAACTTTGGCATGCACAGGG 60.038 55.000 21.36 12.78 0.00 4.45
3299 3539 0.963962 AGAACTTTGGCATGCACAGG 59.036 50.000 21.36 7.98 0.00 4.00
3300 3540 2.806608 AAGAACTTTGGCATGCACAG 57.193 45.000 21.36 13.78 0.00 3.66
3301 3541 3.118847 TGAAAAGAACTTTGGCATGCACA 60.119 39.130 21.36 12.37 32.36 4.57
3302 3542 3.456280 TGAAAAGAACTTTGGCATGCAC 58.544 40.909 21.36 9.64 32.36 4.57
3303 3543 3.815856 TGAAAAGAACTTTGGCATGCA 57.184 38.095 21.36 2.54 32.36 3.96
3304 3544 4.260743 GGTTTGAAAAGAACTTTGGCATGC 60.261 41.667 9.90 9.90 32.36 4.06
3305 3545 4.874966 TGGTTTGAAAAGAACTTTGGCATG 59.125 37.500 0.45 0.00 32.36 4.06
3306 3546 5.096443 TGGTTTGAAAAGAACTTTGGCAT 57.904 34.783 0.45 0.00 32.36 4.40
3307 3547 4.543590 TGGTTTGAAAAGAACTTTGGCA 57.456 36.364 0.45 0.00 32.36 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.