Multiple sequence alignment - TraesCS1A01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G366800 chr1A 100.000 8256 0 0 1 8256 545535644 545527389 0.000000e+00 15247.0
1 TraesCS1A01G366800 chr1A 81.944 144 24 1 719 862 469182797 469182938 4.050000e-23 121.0
2 TraesCS1A01G366800 chr1B 92.238 5759 252 77 2578 8256 617828542 617822899 0.000000e+00 7978.0
3 TraesCS1A01G366800 chr1B 95.813 836 28 4 1769 2598 617829557 617828723 0.000000e+00 1343.0
4 TraesCS1A01G366800 chr1B 93.020 831 42 7 932 1753 617830745 617829922 0.000000e+00 1199.0
5 TraesCS1A01G366800 chr1B 83.513 558 69 14 325 863 446623344 446622791 4.450000e-137 499.0
6 TraesCS1A01G366800 chr1B 80.785 484 71 10 398 863 312028718 312029197 7.880000e-95 359.0
7 TraesCS1A01G366800 chr1B 91.429 70 5 1 264 333 549731319 549731387 2.450000e-15 95.3
8 TraesCS1A01G366800 chr1D 95.156 4211 136 24 1860 6026 450230449 450226263 0.000000e+00 6584.0
9 TraesCS1A01G366800 chr1D 91.953 2274 119 28 6026 8256 450226102 450223850 0.000000e+00 3127.0
10 TraesCS1A01G366800 chr1D 93.158 877 48 6 885 1753 450231714 450230842 0.000000e+00 1277.0
11 TraesCS1A01G366800 chr1D 86.176 557 56 7 325 863 450232707 450232154 4.290000e-162 582.0
12 TraesCS1A01G366800 chr1D 78.788 132 11 9 654 770 370313670 370313799 1.150000e-08 73.1
13 TraesCS1A01G366800 chr5A 97.770 269 6 0 1 269 41409834 41409566 1.620000e-126 464.0
14 TraesCS1A01G366800 chr5A 81.616 495 69 12 388 863 450159112 450159603 2.790000e-104 390.0
15 TraesCS1A01G366800 chr4A 81.547 569 71 20 325 863 715891199 715891763 9.840000e-119 438.0
16 TraesCS1A01G366800 chr4A 81.857 474 64 14 402 857 599912955 599912486 6.050000e-101 379.0
17 TraesCS1A01G366800 chr4A 92.424 66 5 0 264 329 41591277 41591342 2.450000e-15 95.3
18 TraesCS1A01G366800 chr6D 81.607 560 71 20 327 857 19355866 19355310 1.270000e-117 435.0
19 TraesCS1A01G366800 chr7A 95.849 265 11 0 1 265 518419462 518419726 5.920000e-116 429.0
20 TraesCS1A01G366800 chr7A 95.472 265 12 0 1 265 18954683 18954419 2.750000e-114 424.0
21 TraesCS1A01G366800 chr2B 95.185 270 13 0 1 270 233363481 233363750 2.130000e-115 427.0
22 TraesCS1A01G366800 chr2B 95.149 268 12 1 1 268 679893977 679893711 9.910000e-114 422.0
23 TraesCS1A01G366800 chr2B 92.857 70 4 1 264 333 66782593 66782661 5.270000e-17 100.0
24 TraesCS1A01G366800 chr7B 95.167 269 13 0 1 269 164593502 164593234 7.660000e-115 425.0
25 TraesCS1A01G366800 chr7B 95.149 268 13 0 1 268 679697902 679698169 2.750000e-114 424.0
26 TraesCS1A01G366800 chr3B 95.472 265 12 0 1 265 565362980 565362716 2.750000e-114 424.0
27 TraesCS1A01G366800 chr3B 93.939 66 4 0 263 328 762456885 762456820 5.270000e-17 100.0
28 TraesCS1A01G366800 chr5B 94.815 270 14 0 1 270 267776759 267777028 9.910000e-114 422.0
29 TraesCS1A01G366800 chr5B 93.846 65 4 0 264 328 449839811 449839875 1.900000e-16 99.0
30 TraesCS1A01G366800 chr3A 82.227 467 55 15 325 771 502936915 502937373 2.180000e-100 377.0
31 TraesCS1A01G366800 chr6A 81.513 476 71 12 401 863 124721507 124721036 7.820000e-100 375.0
32 TraesCS1A01G366800 chr2D 82.135 459 63 5 418 857 620381995 620382453 7.820000e-100 375.0
33 TraesCS1A01G366800 chr2D 91.429 70 6 0 264 333 30406680 30406749 6.820000e-16 97.1
34 TraesCS1A01G366800 chr2D 84.810 79 9 2 257 332 167566645 167566567 8.890000e-10 76.8
35 TraesCS1A01G366800 chr7D 79.098 488 62 14 388 858 16319354 16319818 4.840000e-77 300.0
36 TraesCS1A01G366800 chr6B 92.754 69 5 0 264 332 413489534 413489466 5.270000e-17 100.0
37 TraesCS1A01G366800 chr5D 90.541 74 7 0 264 337 344825468 344825541 1.900000e-16 99.0
38 TraesCS1A01G366800 chr4D 92.424 66 5 0 264 329 54799384 54799449 2.450000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G366800 chr1A 545527389 545535644 8255 True 15247.000000 15247 100.000000 1 8256 1 chr1A.!!$R1 8255
1 TraesCS1A01G366800 chr1B 617822899 617830745 7846 True 3506.666667 7978 93.690333 932 8256 3 chr1B.!!$R2 7324
2 TraesCS1A01G366800 chr1B 446622791 446623344 553 True 499.000000 499 83.513000 325 863 1 chr1B.!!$R1 538
3 TraesCS1A01G366800 chr1D 450223850 450232707 8857 True 2892.500000 6584 91.610750 325 8256 4 chr1D.!!$R1 7931
4 TraesCS1A01G366800 chr4A 715891199 715891763 564 False 438.000000 438 81.547000 325 863 1 chr4A.!!$F2 538
5 TraesCS1A01G366800 chr6D 19355310 19355866 556 True 435.000000 435 81.607000 327 857 1 chr6D.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 561 0.840722 CCCCACCCAGTTGACCTAGT 60.841 60.000 0.00 0.00 0.00 2.57 F
1159 1620 0.031616 ACTCTCTCCTCCCATCCACC 60.032 60.000 0.00 0.00 0.00 4.61 F
2004 2829 0.605589 GCCGGTACCCCATTATGAGC 60.606 60.000 6.25 0.00 0.00 4.26 F
2436 3262 0.959553 TCAGACTGTCTTCCGTGTCC 59.040 55.000 7.77 0.00 0.00 4.02 F
3965 4997 0.310854 GTCGCCCCAAACTTGTTGAG 59.689 55.000 0.00 0.00 0.00 3.02 F
4172 5204 1.229975 TGTCTGTTGCATGTGGCTCG 61.230 55.000 0.00 0.00 45.15 5.03 F
4787 5819 0.734942 AACCAACTATCGTGGACGCG 60.735 55.000 3.53 3.53 39.60 6.01 F
4952 5984 1.000827 TGTTACAATTGCGGGCTTGTG 60.001 47.619 5.05 0.00 36.34 3.33 F
5468 6530 1.134580 AGTCCATCTCCAGCAATGACG 60.135 52.381 0.00 0.00 0.00 4.35 F
6240 7472 1.302949 CCGGAGGCCATTTCTGGAA 59.697 57.895 12.15 0.00 46.14 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1845 0.602905 CAGGGACGGACTGGAACAAC 60.603 60.0 0.00 0.00 38.70 3.32 R
2705 3733 1.271856 TACCAGATCAAGGGAACGCA 58.728 50.0 8.82 0.00 0.00 5.24 R
3378 4410 0.539051 ACTCTCCAATCTTCGCCTGG 59.461 55.0 0.00 0.00 0.00 4.45 R
4073 5105 0.183492 GGCCATGTCCTAGCAATCCA 59.817 55.0 0.00 0.00 0.00 3.41 R
4778 5810 0.162294 GGTCTTTTAACGCGTCCACG 59.838 55.0 14.44 0.11 43.27 4.94 R
5454 6516 0.390340 GCACTCGTCATTGCTGGAGA 60.390 55.0 5.74 0.00 35.74 3.71 R
6125 7357 0.610232 GCACCTTGTCTGCAATCCCT 60.610 55.0 0.00 0.00 34.56 4.20 R
6239 7471 0.678048 GGAGGCGAGGCTGTTCATTT 60.678 55.0 3.24 0.00 0.00 2.32 R
6299 7531 0.839946 CCAGGTTACCCATGCTAGCT 59.160 55.0 17.23 0.00 0.00 3.32 R
7596 8875 1.084018 TGAATTCCAAGGGAGGGCTT 58.916 50.0 2.27 0.00 31.21 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.868160 TGGGGAGTATCATATACTAGTATCATG 57.132 37.037 18.68 17.93 36.25 3.07
30 31 8.798402 GGGGAGTATCATATACTAGTATCATGC 58.202 40.741 18.68 12.34 36.25 4.06
31 32 9.355916 GGGAGTATCATATACTAGTATCATGCA 57.644 37.037 18.68 1.71 36.25 3.96
49 50 7.288810 TCATGCATATGATACTAGTGTGTGA 57.711 36.000 6.97 0.00 38.37 3.58
50 51 7.899973 TCATGCATATGATACTAGTGTGTGAT 58.100 34.615 6.97 0.00 38.37 3.06
51 52 9.023962 TCATGCATATGATACTAGTGTGTGATA 57.976 33.333 6.97 0.00 38.37 2.15
52 53 9.080915 CATGCATATGATACTAGTGTGTGATAC 57.919 37.037 6.97 0.00 36.36 2.24
53 54 8.409358 TGCATATGATACTAGTGTGTGATACT 57.591 34.615 6.97 0.00 0.00 2.12
54 55 9.515226 TGCATATGATACTAGTGTGTGATACTA 57.485 33.333 6.97 0.00 0.00 1.82
55 56 9.776158 GCATATGATACTAGTGTGTGATACTAC 57.224 37.037 6.97 0.00 0.00 2.73
58 59 8.624367 ATGATACTAGTGTGTGATACTACCTC 57.376 38.462 5.39 0.00 0.00 3.85
59 60 6.996879 TGATACTAGTGTGTGATACTACCTCC 59.003 42.308 5.39 0.00 0.00 4.30
60 61 4.534797 ACTAGTGTGTGATACTACCTCCC 58.465 47.826 0.00 0.00 0.00 4.30
61 62 3.759815 AGTGTGTGATACTACCTCCCT 57.240 47.619 0.00 0.00 0.00 4.20
62 63 4.875578 AGTGTGTGATACTACCTCCCTA 57.124 45.455 0.00 0.00 0.00 3.53
63 64 5.202746 AGTGTGTGATACTACCTCCCTAA 57.797 43.478 0.00 0.00 0.00 2.69
64 65 5.778542 AGTGTGTGATACTACCTCCCTAAT 58.221 41.667 0.00 0.00 0.00 1.73
65 66 5.598830 AGTGTGTGATACTACCTCCCTAATG 59.401 44.000 0.00 0.00 0.00 1.90
66 67 4.344102 TGTGTGATACTACCTCCCTAATGC 59.656 45.833 0.00 0.00 0.00 3.56
67 68 4.344102 GTGTGATACTACCTCCCTAATGCA 59.656 45.833 0.00 0.00 0.00 3.96
68 69 5.012148 GTGTGATACTACCTCCCTAATGCAT 59.988 44.000 0.00 0.00 0.00 3.96
69 70 6.210784 GTGTGATACTACCTCCCTAATGCATA 59.789 42.308 0.00 0.00 0.00 3.14
70 71 6.437477 TGTGATACTACCTCCCTAATGCATAG 59.563 42.308 0.00 0.00 0.00 2.23
71 72 6.437793 GTGATACTACCTCCCTAATGCATAGT 59.562 42.308 0.00 0.00 0.00 2.12
72 73 7.614583 GTGATACTACCTCCCTAATGCATAGTA 59.385 40.741 0.00 0.81 0.00 1.82
73 74 8.344546 TGATACTACCTCCCTAATGCATAGTAT 58.655 37.037 11.08 11.08 37.18 2.12
74 75 9.203163 GATACTACCTCCCTAATGCATAGTATT 57.797 37.037 12.08 0.00 35.52 1.89
118 119 9.712305 AGTACTCTATTTATTGCCATACATGAC 57.288 33.333 0.00 0.00 0.00 3.06
119 120 9.489084 GTACTCTATTTATTGCCATACATGACA 57.511 33.333 0.00 0.00 0.00 3.58
120 121 8.383318 ACTCTATTTATTGCCATACATGACAC 57.617 34.615 0.00 0.00 0.00 3.67
121 122 7.992608 ACTCTATTTATTGCCATACATGACACA 59.007 33.333 0.00 0.00 0.00 3.72
122 123 8.744568 TCTATTTATTGCCATACATGACACAA 57.255 30.769 0.00 0.00 0.00 3.33
123 124 9.183368 TCTATTTATTGCCATACATGACACAAA 57.817 29.630 0.00 0.00 0.00 2.83
124 125 9.454585 CTATTTATTGCCATACATGACACAAAG 57.545 33.333 0.00 0.00 0.00 2.77
125 126 6.832520 TTATTGCCATACATGACACAAAGT 57.167 33.333 0.00 0.00 0.00 2.66
126 127 7.929941 TTATTGCCATACATGACACAAAGTA 57.070 32.000 0.00 0.00 0.00 2.24
127 128 5.878332 TTGCCATACATGACACAAAGTAG 57.122 39.130 0.00 0.00 0.00 2.57
128 129 3.689161 TGCCATACATGACACAAAGTAGC 59.311 43.478 0.00 0.00 0.00 3.58
129 130 3.689161 GCCATACATGACACAAAGTAGCA 59.311 43.478 0.00 0.00 0.00 3.49
130 131 4.336433 GCCATACATGACACAAAGTAGCAT 59.664 41.667 0.00 0.00 0.00 3.79
131 132 5.527214 GCCATACATGACACAAAGTAGCATA 59.473 40.000 0.00 0.00 0.00 3.14
132 133 6.205464 GCCATACATGACACAAAGTAGCATAT 59.795 38.462 0.00 0.00 0.00 1.78
133 134 7.387673 GCCATACATGACACAAAGTAGCATATA 59.612 37.037 0.00 0.00 0.00 0.86
134 135 9.271828 CCATACATGACACAAAGTAGCATATAA 57.728 33.333 0.00 0.00 0.00 0.98
178 179 9.987726 TCATGATATGATACTACATCCTCTCTT 57.012 33.333 0.00 0.00 33.59 2.85
184 185 8.774546 ATGATACTACATCCTCTCTTTCTTCA 57.225 34.615 0.00 0.00 0.00 3.02
185 186 8.774546 TGATACTACATCCTCTCTTTCTTCAT 57.225 34.615 0.00 0.00 0.00 2.57
186 187 9.206690 TGATACTACATCCTCTCTTTCTTCATT 57.793 33.333 0.00 0.00 0.00 2.57
192 193 7.994194 ACATCCTCTCTTTCTTCATTTAATGC 58.006 34.615 0.00 0.00 0.00 3.56
193 194 7.833183 ACATCCTCTCTTTCTTCATTTAATGCT 59.167 33.333 0.00 0.00 0.00 3.79
194 195 9.334947 CATCCTCTCTTTCTTCATTTAATGCTA 57.665 33.333 0.00 0.00 0.00 3.49
196 197 9.334947 TCCTCTCTTTCTTCATTTAATGCTATG 57.665 33.333 0.00 0.00 0.00 2.23
197 198 8.074972 CCTCTCTTTCTTCATTTAATGCTATGC 58.925 37.037 0.00 0.00 0.00 3.14
198 199 7.934457 TCTCTTTCTTCATTTAATGCTATGCC 58.066 34.615 0.00 0.00 0.00 4.40
199 200 7.557358 TCTCTTTCTTCATTTAATGCTATGCCA 59.443 33.333 0.00 0.00 0.00 4.92
200 201 7.483307 TCTTTCTTCATTTAATGCTATGCCAC 58.517 34.615 0.00 0.00 0.00 5.01
201 202 5.772825 TCTTCATTTAATGCTATGCCACC 57.227 39.130 0.00 0.00 0.00 4.61
202 203 5.448654 TCTTCATTTAATGCTATGCCACCT 58.551 37.500 0.00 0.00 0.00 4.00
203 204 5.532406 TCTTCATTTAATGCTATGCCACCTC 59.468 40.000 0.00 0.00 0.00 3.85
204 205 4.790937 TCATTTAATGCTATGCCACCTCA 58.209 39.130 0.00 0.00 0.00 3.86
205 206 5.387788 TCATTTAATGCTATGCCACCTCAT 58.612 37.500 0.00 0.00 0.00 2.90
206 207 5.834742 TCATTTAATGCTATGCCACCTCATT 59.165 36.000 0.00 0.00 0.00 2.57
207 208 7.003482 TCATTTAATGCTATGCCACCTCATTA 58.997 34.615 0.00 0.00 0.00 1.90
208 209 7.505248 TCATTTAATGCTATGCCACCTCATTAA 59.495 33.333 0.00 0.00 37.64 1.40
209 210 7.652524 TTTAATGCTATGCCACCTCATTAAA 57.347 32.000 11.91 11.91 42.43 1.52
210 211 7.652524 TTAATGCTATGCCACCTCATTAAAA 57.347 32.000 0.00 0.00 36.95 1.52
211 212 6.736110 AATGCTATGCCACCTCATTAAAAT 57.264 33.333 0.00 0.00 0.00 1.82
212 213 6.736110 ATGCTATGCCACCTCATTAAAATT 57.264 33.333 0.00 0.00 0.00 1.82
213 214 5.904941 TGCTATGCCACCTCATTAAAATTG 58.095 37.500 0.00 0.00 0.00 2.32
214 215 4.746611 GCTATGCCACCTCATTAAAATTGC 59.253 41.667 0.00 0.00 0.00 3.56
215 216 5.452356 GCTATGCCACCTCATTAAAATTGCT 60.452 40.000 0.00 0.00 0.00 3.91
216 217 4.888326 TGCCACCTCATTAAAATTGCTT 57.112 36.364 0.00 0.00 0.00 3.91
217 218 5.991933 TGCCACCTCATTAAAATTGCTTA 57.008 34.783 0.00 0.00 0.00 3.09
218 219 5.964758 TGCCACCTCATTAAAATTGCTTAG 58.035 37.500 0.00 0.00 0.00 2.18
219 220 5.480073 TGCCACCTCATTAAAATTGCTTAGT 59.520 36.000 0.00 0.00 0.00 2.24
220 221 6.014669 TGCCACCTCATTAAAATTGCTTAGTT 60.015 34.615 0.00 0.00 0.00 2.24
221 222 6.311200 GCCACCTCATTAAAATTGCTTAGTTG 59.689 38.462 0.00 0.00 0.00 3.16
222 223 6.813152 CCACCTCATTAAAATTGCTTAGTTGG 59.187 38.462 0.00 0.00 0.00 3.77
223 224 6.311200 CACCTCATTAAAATTGCTTAGTTGGC 59.689 38.462 0.00 0.00 0.00 4.52
224 225 6.014669 ACCTCATTAAAATTGCTTAGTTGGCA 60.015 34.615 0.00 0.00 37.97 4.92
225 226 7.043565 CCTCATTAAAATTGCTTAGTTGGCAT 58.956 34.615 0.00 0.00 39.54 4.40
226 227 7.010738 CCTCATTAAAATTGCTTAGTTGGCATG 59.989 37.037 0.00 0.00 39.54 4.06
227 228 6.313411 TCATTAAAATTGCTTAGTTGGCATGC 59.687 34.615 9.90 9.90 39.54 4.06
228 229 3.681593 AAATTGCTTAGTTGGCATGCA 57.318 38.095 21.36 2.54 39.54 3.96
229 230 3.899052 AATTGCTTAGTTGGCATGCAT 57.101 38.095 21.36 4.57 39.54 3.96
230 231 2.658373 TTGCTTAGTTGGCATGCATG 57.342 45.000 22.70 22.70 39.54 4.06
231 232 1.836802 TGCTTAGTTGGCATGCATGA 58.163 45.000 30.64 7.50 34.56 3.07
232 233 2.380941 TGCTTAGTTGGCATGCATGAT 58.619 42.857 30.64 11.73 34.56 2.45
233 234 3.553904 TGCTTAGTTGGCATGCATGATA 58.446 40.909 30.64 14.66 34.56 2.15
234 235 3.316029 TGCTTAGTTGGCATGCATGATAC 59.684 43.478 30.64 21.28 34.56 2.24
235 236 3.567164 GCTTAGTTGGCATGCATGATACT 59.433 43.478 30.64 26.11 0.00 2.12
236 237 4.756642 GCTTAGTTGGCATGCATGATACTA 59.243 41.667 30.64 25.19 0.00 1.82
237 238 5.334414 GCTTAGTTGGCATGCATGATACTAC 60.334 44.000 30.64 22.16 0.00 2.73
238 239 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
239 240 3.137176 AGTTGGCATGCATGATACTACCT 59.863 43.478 30.64 11.98 0.00 3.08
240 241 4.347876 AGTTGGCATGCATGATACTACCTA 59.652 41.667 30.64 13.97 0.00 3.08
241 242 5.013495 AGTTGGCATGCATGATACTACCTAT 59.987 40.000 30.64 7.77 0.00 2.57
242 243 4.835678 TGGCATGCATGATACTACCTATG 58.164 43.478 30.64 0.23 0.00 2.23
243 244 4.531732 TGGCATGCATGATACTACCTATGA 59.468 41.667 30.64 1.93 0.00 2.15
244 245 5.190330 TGGCATGCATGATACTACCTATGAT 59.810 40.000 30.64 0.00 0.00 2.45
245 246 6.383726 TGGCATGCATGATACTACCTATGATA 59.616 38.462 30.64 0.87 0.00 2.15
246 247 6.703607 GGCATGCATGATACTACCTATGATAC 59.296 42.308 30.64 5.71 0.00 2.24
247 248 7.418368 GGCATGCATGATACTACCTATGATACT 60.418 40.741 30.64 0.00 0.00 2.12
248 249 8.633561 GCATGCATGATACTACCTATGATACTA 58.366 37.037 30.64 0.00 0.00 1.82
249 250 9.958234 CATGCATGATACTACCTATGATACTAC 57.042 37.037 22.59 0.00 0.00 2.73
250 251 8.521170 TGCATGATACTACCTATGATACTACC 57.479 38.462 0.00 0.00 0.00 3.18
251 252 8.113462 TGCATGATACTACCTATGATACTACCA 58.887 37.037 0.00 0.00 0.00 3.25
252 253 9.137459 GCATGATACTACCTATGATACTACCAT 57.863 37.037 0.00 0.00 0.00 3.55
258 259 8.558973 ACTACCTATGATACTACCATTACGAC 57.441 38.462 0.00 0.00 0.00 4.34
259 260 6.830873 ACCTATGATACTACCATTACGACC 57.169 41.667 0.00 0.00 0.00 4.79
260 261 6.309357 ACCTATGATACTACCATTACGACCA 58.691 40.000 0.00 0.00 0.00 4.02
261 262 6.433404 ACCTATGATACTACCATTACGACCAG 59.567 42.308 0.00 0.00 0.00 4.00
262 263 4.579454 TGATACTACCATTACGACCAGC 57.421 45.455 0.00 0.00 0.00 4.85
263 264 3.319972 TGATACTACCATTACGACCAGCC 59.680 47.826 0.00 0.00 0.00 4.85
264 265 1.861982 ACTACCATTACGACCAGCCT 58.138 50.000 0.00 0.00 0.00 4.58
265 266 2.185387 ACTACCATTACGACCAGCCTT 58.815 47.619 0.00 0.00 0.00 4.35
266 267 3.368248 ACTACCATTACGACCAGCCTTA 58.632 45.455 0.00 0.00 0.00 2.69
267 268 2.981859 ACCATTACGACCAGCCTTAG 57.018 50.000 0.00 0.00 0.00 2.18
268 269 2.185387 ACCATTACGACCAGCCTTAGT 58.815 47.619 0.00 0.00 0.00 2.24
269 270 3.368248 ACCATTACGACCAGCCTTAGTA 58.632 45.455 0.00 0.00 0.00 1.82
270 271 3.131755 ACCATTACGACCAGCCTTAGTAC 59.868 47.826 0.00 0.00 0.00 2.73
271 272 3.131577 CCATTACGACCAGCCTTAGTACA 59.868 47.826 0.00 0.00 0.00 2.90
272 273 4.382254 CCATTACGACCAGCCTTAGTACAA 60.382 45.833 0.00 0.00 0.00 2.41
273 274 5.357257 CATTACGACCAGCCTTAGTACAAT 58.643 41.667 0.00 0.00 0.00 2.71
274 275 3.975168 ACGACCAGCCTTAGTACAATT 57.025 42.857 0.00 0.00 0.00 2.32
275 276 4.281898 ACGACCAGCCTTAGTACAATTT 57.718 40.909 0.00 0.00 0.00 1.82
276 277 4.648651 ACGACCAGCCTTAGTACAATTTT 58.351 39.130 0.00 0.00 0.00 1.82
277 278 5.797051 ACGACCAGCCTTAGTACAATTTTA 58.203 37.500 0.00 0.00 0.00 1.52
278 279 6.412214 ACGACCAGCCTTAGTACAATTTTAT 58.588 36.000 0.00 0.00 0.00 1.40
279 280 7.558604 ACGACCAGCCTTAGTACAATTTTATA 58.441 34.615 0.00 0.00 0.00 0.98
280 281 7.493645 ACGACCAGCCTTAGTACAATTTTATAC 59.506 37.037 0.00 0.00 0.00 1.47
281 282 7.493320 CGACCAGCCTTAGTACAATTTTATACA 59.507 37.037 0.00 0.00 0.00 2.29
282 283 9.169592 GACCAGCCTTAGTACAATTTTATACAA 57.830 33.333 0.00 0.00 0.00 2.41
283 284 9.174166 ACCAGCCTTAGTACAATTTTATACAAG 57.826 33.333 0.00 0.00 0.00 3.16
284 285 9.391006 CCAGCCTTAGTACAATTTTATACAAGA 57.609 33.333 0.00 0.00 0.00 3.02
286 287 9.110502 AGCCTTAGTACAATTTTATACAAGAGC 57.889 33.333 0.00 0.00 0.00 4.09
287 288 9.110502 GCCTTAGTACAATTTTATACAAGAGCT 57.889 33.333 0.00 0.00 0.00 4.09
303 304 7.659652 ACAAGAGCTAATACAAAGTTGAGAC 57.340 36.000 0.00 0.00 0.00 3.36
304 305 7.217200 ACAAGAGCTAATACAAAGTTGAGACA 58.783 34.615 0.00 0.00 0.00 3.41
305 306 7.171678 ACAAGAGCTAATACAAAGTTGAGACAC 59.828 37.037 0.00 0.00 0.00 3.67
306 307 6.998802 AGAGCTAATACAAAGTTGAGACACT 58.001 36.000 0.00 0.00 0.00 3.55
307 308 7.445945 AGAGCTAATACAAAGTTGAGACACTT 58.554 34.615 0.00 0.00 38.74 3.16
308 309 8.585881 AGAGCTAATACAAAGTTGAGACACTTA 58.414 33.333 0.00 0.00 35.87 2.24
309 310 9.372369 GAGCTAATACAAAGTTGAGACACTTAT 57.628 33.333 0.00 0.00 35.87 1.73
310 311 9.726438 AGCTAATACAAAGTTGAGACACTTATT 57.274 29.630 0.00 0.00 35.87 1.40
316 317 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
317 318 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
318 319 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
319 320 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
320 321 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
321 322 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
322 323 5.243060 TGAGACACTTATTTTGAGACGGAGA 59.757 40.000 0.00 0.00 0.00 3.71
323 324 5.715070 AGACACTTATTTTGAGACGGAGAG 58.285 41.667 0.00 0.00 0.00 3.20
345 346 2.576191 AGTATGTTAGAAGGGCCTGCAA 59.424 45.455 15.67 3.15 0.00 4.08
445 456 9.702253 TGTTAAATAAAATATGTTAGGAGGGCA 57.298 29.630 0.00 0.00 0.00 5.36
454 465 3.884895 TGTTAGGAGGGCATGTATTGTG 58.115 45.455 0.00 0.00 0.00 3.33
468 480 6.627953 GCATGTATTGTGCCCTTTTTCTACAT 60.628 38.462 0.00 0.00 36.61 2.29
478 492 5.527951 GCCCTTTTTCTACATACTAAGGAGC 59.472 44.000 0.00 0.00 35.30 4.70
533 547 3.238197 ATGACCCCAAAGGCCCCAC 62.238 63.158 0.00 0.00 40.58 4.61
547 561 0.840722 CCCCACCCAGTTGACCTAGT 60.841 60.000 0.00 0.00 0.00 2.57
666 687 3.319122 GTGTGAAAATCAGGAAGCCACTT 59.681 43.478 0.00 0.00 0.00 3.16
670 691 4.648762 TGAAAATCAGGAAGCCACTTCAAA 59.351 37.500 9.38 0.00 41.77 2.69
679 700 4.309933 GAAGCCACTTCAAAAATCAAGGG 58.690 43.478 2.51 0.00 39.95 3.95
694 715 3.784178 TCAAGGGACAGAGAGAGTGAAT 58.216 45.455 0.00 0.00 0.00 2.57
712 734 9.039165 AGAGTGAATGAATTAAATGGATTTGGT 57.961 29.630 0.00 0.00 0.00 3.67
713 735 9.305925 GAGTGAATGAATTAAATGGATTTGGTC 57.694 33.333 0.00 0.00 0.00 4.02
714 736 9.039165 AGTGAATGAATTAAATGGATTTGGTCT 57.961 29.630 0.00 0.00 0.00 3.85
771 813 8.731605 TGAATGGTTGCGTGAATATAAGTTAAA 58.268 29.630 0.00 0.00 0.00 1.52
774 816 8.046294 TGGTTGCGTGAATATAAGTTAAACAT 57.954 30.769 0.00 0.00 0.00 2.71
775 817 9.163899 TGGTTGCGTGAATATAAGTTAAACATA 57.836 29.630 0.00 0.00 0.00 2.29
864 908 3.806591 TTCGGAGTCCACGAATCAC 57.193 52.632 10.49 0.00 44.41 3.06
866 910 3.407244 TTCGGAGTCCACGAATCACGG 62.407 57.143 10.49 0.00 44.41 4.94
879 923 5.567234 CGAATCACGGATATGCTATATGC 57.433 43.478 0.00 0.00 39.23 3.14
881 925 6.438763 CGAATCACGGATATGCTATATGCTA 58.561 40.000 0.00 0.00 39.40 3.49
882 926 6.580416 CGAATCACGGATATGCTATATGCTAG 59.420 42.308 0.00 0.00 39.40 3.42
884 928 8.465273 AATCACGGATATGCTATATGCTAGTA 57.535 34.615 0.00 0.00 43.37 1.82
887 931 8.745590 TCACGGATATGCTATATGCTAGTAAAA 58.254 33.333 0.00 0.00 43.37 1.52
888 932 8.808529 CACGGATATGCTATATGCTAGTAAAAC 58.191 37.037 0.00 0.00 43.37 2.43
889 933 8.750298 ACGGATATGCTATATGCTAGTAAAACT 58.250 33.333 0.00 0.00 43.37 2.66
895 1356 9.672673 ATGCTATATGCTAGTAAAACTAATGGG 57.327 33.333 0.00 0.00 43.37 4.00
896 1357 8.100791 TGCTATATGCTAGTAAAACTAATGGGG 58.899 37.037 0.00 0.00 43.37 4.96
900 1361 6.243216 TGCTAGTAAAACTAATGGGGGTAG 57.757 41.667 0.00 0.00 29.00 3.18
914 1375 1.558294 GGGGTAGAAATCCTCCGTTGT 59.442 52.381 0.00 0.00 0.00 3.32
923 1384 1.813753 CCTCCGTTGTATGTGCCGG 60.814 63.158 0.00 0.00 41.75 6.13
929 1390 1.670674 CGTTGTATGTGCCGGTGTAGT 60.671 52.381 1.90 0.00 0.00 2.73
930 1391 1.997606 GTTGTATGTGCCGGTGTAGTC 59.002 52.381 1.90 0.00 0.00 2.59
968 1429 2.063266 CAACCACATGCATGCAGTTTC 58.937 47.619 26.69 0.00 0.00 2.78
975 1436 5.640357 CCACATGCATGCAGTTTCTAAAAAT 59.360 36.000 26.69 0.84 0.00 1.82
976 1437 6.401688 CCACATGCATGCAGTTTCTAAAAATG 60.402 38.462 26.69 16.19 0.00 2.32
1028 1489 1.961133 TATTTTCCCCACCTCGTCCT 58.039 50.000 0.00 0.00 0.00 3.85
1119 1580 2.281345 CTCCTCGCCATGCATCCC 60.281 66.667 0.00 0.00 0.00 3.85
1159 1620 0.031616 ACTCTCTCCTCCCATCCACC 60.032 60.000 0.00 0.00 0.00 4.61
1161 1622 1.075970 CTCTCCTCCCATCCACCGA 60.076 63.158 0.00 0.00 0.00 4.69
1242 1707 0.898320 TCTCCTCCTTTTCTGCCTCG 59.102 55.000 0.00 0.00 0.00 4.63
1245 1710 1.374758 CTCCTTTTCTGCCTCGCGT 60.375 57.895 5.77 0.00 0.00 6.01
1376 1841 1.276138 GGAACCCTTGCTTTGATTGGG 59.724 52.381 0.00 0.00 43.26 4.12
1380 1845 1.216178 CTTGCTTTGATTGGGCCGG 59.784 57.895 0.00 0.00 0.00 6.13
1383 1848 1.079888 GCTTTGATTGGGCCGGTTG 60.080 57.895 1.90 0.00 0.00 3.77
1396 1861 1.666872 CGGTTGTTCCAGTCCGTCC 60.667 63.158 0.00 0.00 38.45 4.79
1401 1866 2.203788 TTCCAGTCCGTCCCTGCT 60.204 61.111 0.00 0.00 0.00 4.24
1436 1905 9.396022 ACCCTGTTGATTAATCTAACACATTAG 57.604 33.333 20.22 13.98 39.45 1.73
1475 1944 1.002366 CTCTTCAACGCCCAAGATCG 58.998 55.000 0.00 0.00 0.00 3.69
1523 1992 2.505866 GCTGCGGTTTATTTTCGACAG 58.494 47.619 0.00 0.00 34.12 3.51
1619 2088 3.242870 CCATAAATTGTTCAGGCGAGCTC 60.243 47.826 2.73 2.73 0.00 4.09
1636 2105 1.944430 GCTCGTGTCCCCCTTTTACAG 60.944 57.143 0.00 0.00 0.00 2.74
1645 2114 3.133183 TCCCCCTTTTACAGTTTTTGTGC 59.867 43.478 0.00 0.00 41.10 4.57
1731 2201 6.980397 ACCTGCAAATTTTGATATCCGAATTC 59.020 34.615 13.26 0.00 0.00 2.17
1765 2565 3.997021 CGGGAACATAGTCCTGCATTATC 59.003 47.826 0.00 0.00 37.24 1.75
1769 2569 5.413833 GGAACATAGTCCTGCATTATCCATG 59.586 44.000 0.00 0.00 34.56 3.66
1804 2624 2.033424 GGCGATACCAAGGCTGAATTTC 59.967 50.000 0.00 0.00 38.86 2.17
1895 2715 7.831690 TGCATTATAAGTTCATAACCACCTTCA 59.168 33.333 0.00 0.00 0.00 3.02
1987 2812 2.042686 TATCTGCCTGTTGTGATGCC 57.957 50.000 0.00 0.00 0.00 4.40
2004 2829 0.605589 GCCGGTACCCCATTATGAGC 60.606 60.000 6.25 0.00 0.00 4.26
2091 2916 4.106197 GACACCAGATGATAACGTGAGAC 58.894 47.826 0.00 0.00 0.00 3.36
2153 2978 9.482627 GGTTGGACACACATTTATTTATTGAAA 57.517 29.630 0.00 0.00 0.00 2.69
2174 2999 7.143340 TGAAATAATCAGCAATGCTAATCTGC 58.857 34.615 7.70 0.00 36.40 4.26
2300 3125 8.331730 ACTTTCTAGTGTAAGTTTTTGTGTGT 57.668 30.769 0.00 0.00 31.20 3.72
2316 3142 2.096819 GTGTGTGTTTGTGTGGTACCAG 59.903 50.000 16.93 0.00 0.00 4.00
2320 3146 2.353579 GTGTTTGTGTGGTACCAGTGTC 59.646 50.000 16.93 3.76 0.00 3.67
2402 3228 3.187637 GCATTAGTTTGGTACTCGCACAA 59.812 43.478 0.00 0.00 38.33 3.33
2415 3241 2.088423 TCGCACAACAAGGAAAAGTGT 58.912 42.857 0.00 0.00 32.99 3.55
2436 3262 0.959553 TCAGACTGTCTTCCGTGTCC 59.040 55.000 7.77 0.00 0.00 4.02
2607 3634 3.380471 TTTGACATCCGGAATTGGGAT 57.620 42.857 9.01 2.44 45.09 3.85
2624 3651 2.967887 GGGATCTTATGCATTTGCCCTT 59.032 45.455 3.54 0.00 41.18 3.95
2705 3733 3.704566 TCACTGATATACAAGAACGGCCT 59.295 43.478 0.00 0.00 0.00 5.19
2706 3734 3.804325 CACTGATATACAAGAACGGCCTG 59.196 47.826 0.00 0.00 0.00 4.85
2834 3862 3.447229 TGACACGGAATTCTAGCTGATCA 59.553 43.478 5.23 0.00 0.00 2.92
2859 3887 2.094854 GGTTTGCAAGGATCAAGCAGAG 60.095 50.000 0.00 0.00 39.72 3.35
2903 3931 6.648310 ACACTTGAGACACTGATTACTTCATG 59.352 38.462 0.00 0.00 32.72 3.07
2927 3955 5.694458 GCCGTGTAAATTTTCCAACAGATTT 59.306 36.000 0.00 0.00 0.00 2.17
2973 4001 6.174720 TCTGATGTAAGTTGTTGGTCTTCT 57.825 37.500 0.00 0.00 0.00 2.85
2974 4002 7.297936 TCTGATGTAAGTTGTTGGTCTTCTA 57.702 36.000 0.00 0.00 0.00 2.10
2977 4005 8.149973 TGATGTAAGTTGTTGGTCTTCTAAAC 57.850 34.615 0.00 0.00 0.00 2.01
2978 4006 7.771361 TGATGTAAGTTGTTGGTCTTCTAAACA 59.229 33.333 0.00 0.00 32.19 2.83
2980 4008 8.514330 TGTAAGTTGTTGGTCTTCTAAACAAT 57.486 30.769 3.79 0.00 43.47 2.71
2981 4009 8.617809 TGTAAGTTGTTGGTCTTCTAAACAATC 58.382 33.333 3.79 0.00 43.47 2.67
3057 4086 9.941325 AGTAATTGAGACATCATTCTGATATCC 57.059 33.333 0.00 0.00 34.28 2.59
3058 4087 9.716531 GTAATTGAGACATCATTCTGATATCCA 57.283 33.333 0.00 0.00 34.28 3.41
3149 4180 2.092968 AGTGACTTGTGAGGTGCTTCAA 60.093 45.455 0.00 0.00 0.00 2.69
3162 4193 3.307480 GGTGCTTCAACTTCCCTAAGCTA 60.307 47.826 7.35 0.00 43.69 3.32
3173 4204 5.432060 ACTTCCCTAAGCTACCCAATAATGT 59.568 40.000 0.00 0.00 36.05 2.71
3254 4285 4.566004 AGAAGAGTTTATACTTGCGCACA 58.434 39.130 11.12 0.00 33.84 4.57
3284 4315 1.617322 ACGACAGTCCTGTGCTAAGA 58.383 50.000 4.35 0.00 45.05 2.10
3287 4318 3.181469 ACGACAGTCCTGTGCTAAGAAAA 60.181 43.478 4.35 0.00 45.05 2.29
3351 4383 8.261522 GGATTAGTTACCATCTGATTCCCTATC 58.738 40.741 0.00 0.00 0.00 2.08
3378 4410 2.429610 TCCATCTTACCGCTCCTTGTAC 59.570 50.000 0.00 0.00 0.00 2.90
3384 4416 2.509336 CGCTCCTTGTACCAGGCG 60.509 66.667 8.16 3.31 33.35 5.52
3449 4481 4.665292 TGTTTTTGTTTAACACGCGTATCG 59.335 37.500 13.44 1.44 45.38 2.92
3500 4532 7.139896 AGATGCGTATGATACAAGACTAGAG 57.860 40.000 3.24 0.00 0.00 2.43
3523 4555 2.627945 TGCCTCAAGTATTAACCGCAG 58.372 47.619 0.00 0.00 0.00 5.18
3651 4683 2.005451 GGATTAGCATATCCAGCAGCG 58.995 52.381 11.15 0.00 43.04 5.18
3890 4922 6.936968 ACTACCAGACAAGGAGAAGTATTT 57.063 37.500 0.00 0.00 0.00 1.40
3965 4997 0.310854 GTCGCCCCAAACTTGTTGAG 59.689 55.000 0.00 0.00 0.00 3.02
4004 5036 2.766313 GTGGAGTATATTGCATGCGGA 58.234 47.619 14.09 4.43 0.00 5.54
4073 5105 3.356290 GGGTGATGGTTCTTACAATGCT 58.644 45.455 0.00 0.00 0.00 3.79
4172 5204 1.229975 TGTCTGTTGCATGTGGCTCG 61.230 55.000 0.00 0.00 45.15 5.03
4298 5330 4.401925 AGGAAGTTGAATCTTTGAGTGGG 58.598 43.478 0.00 0.00 0.00 4.61
4326 5358 2.030893 ACGATGAAAGTTGCATGTGGTG 60.031 45.455 0.00 0.00 0.00 4.17
4397 5429 4.689612 TGTGGTATCCAGGAAGCTATTC 57.310 45.455 0.00 0.00 32.34 1.75
4427 5459 4.450419 GGTGATGGAGATAAGAATCGCTTG 59.550 45.833 0.00 0.00 37.42 4.01
4463 5495 2.359967 GGCTCGGCTAGTTCCCACT 61.360 63.158 0.00 0.00 36.99 4.00
4712 5744 4.474113 CTTCACGGAGCGAAGTATATACC 58.526 47.826 9.32 0.00 41.30 2.73
4751 5783 2.142292 GAAGGCTGGGACATGGTGGT 62.142 60.000 0.00 0.00 38.20 4.16
4763 5795 6.126409 GGGACATGGTGGTATTGAAGATAAA 58.874 40.000 0.00 0.00 0.00 1.40
4787 5819 0.734942 AACCAACTATCGTGGACGCG 60.735 55.000 3.53 3.53 39.60 6.01
4829 5861 9.855021 GTTAAAAGTATAGCATGTGGTTCAAAT 57.145 29.630 0.00 0.00 0.00 2.32
4868 5900 3.066760 GCATACATAAGTGGGTTTCAGGC 59.933 47.826 0.00 0.00 0.00 4.85
4952 5984 1.000827 TGTTACAATTGCGGGCTTGTG 60.001 47.619 5.05 0.00 36.34 3.33
5075 6107 4.899239 GCAGATAGCGGCGGCACT 62.899 66.667 19.21 7.39 43.41 4.40
5086 6118 1.271379 CGGCGGCACTAATAGTCCATA 59.729 52.381 10.53 0.00 0.00 2.74
5117 6149 1.809684 AGAGTGTCATGACTCGTCGA 58.190 50.000 25.55 2.16 46.04 4.20
5207 6239 1.284657 CAGAGCCAGTCAAGTATGCG 58.715 55.000 0.00 0.00 0.00 4.73
5234 6266 7.137490 TGCAAAATCAGTTAGAAGTGAGATG 57.863 36.000 6.02 5.84 41.31 2.90
5363 6404 2.278738 GGAATGGGCGGAATGGGT 59.721 61.111 0.00 0.00 0.00 4.51
5369 6431 2.457323 GGGCGGAATGGGTATGGGA 61.457 63.158 0.00 0.00 0.00 4.37
5454 6516 5.643421 ATCTCATAAGAAGCCAAGTCCAT 57.357 39.130 0.00 0.00 34.49 3.41
5466 6528 2.356432 CCAAGTCCATCTCCAGCAATGA 60.356 50.000 0.00 0.00 0.00 2.57
5468 6530 1.134580 AGTCCATCTCCAGCAATGACG 60.135 52.381 0.00 0.00 0.00 4.35
5587 6649 8.282982 TCAGGTATGATTTAGAAGTCTAGGTCT 58.717 37.037 0.00 0.00 0.00 3.85
5588 6650 9.575868 CAGGTATGATTTAGAAGTCTAGGTCTA 57.424 37.037 0.00 0.00 0.00 2.59
5589 6651 9.802039 AGGTATGATTTAGAAGTCTAGGTCTAG 57.198 37.037 0.00 0.00 34.56 2.43
5590 6652 9.016438 GGTATGATTTAGAAGTCTAGGTCTAGG 57.984 40.741 5.31 0.00 34.06 3.02
5591 6653 9.577222 GTATGATTTAGAAGTCTAGGTCTAGGT 57.423 37.037 5.31 0.00 34.06 3.08
5592 6654 8.700439 ATGATTTAGAAGTCTAGGTCTAGGTC 57.300 38.462 5.31 2.02 34.06 3.85
5593 6655 7.874252 TGATTTAGAAGTCTAGGTCTAGGTCT 58.126 38.462 5.31 8.03 34.06 3.85
5594 6656 8.337739 TGATTTAGAAGTCTAGGTCTAGGTCTT 58.662 37.037 5.31 9.51 33.87 3.01
5595 6657 9.192642 GATTTAGAAGTCTAGGTCTAGGTCTTT 57.807 37.037 5.31 5.29 32.59 2.52
5596 6658 8.953223 TTTAGAAGTCTAGGTCTAGGTCTTTT 57.047 34.615 5.31 7.99 32.59 2.27
5597 6659 8.953223 TTAGAAGTCTAGGTCTAGGTCTTTTT 57.047 34.615 5.31 6.30 32.59 1.94
5634 6696 4.938226 ACTGTATCTTCTTGGCTTTAGCAC 59.062 41.667 3.88 0.00 44.36 4.40
5705 6767 6.016777 AGCTAAAACAGAAATGTGAAGTCCAG 60.017 38.462 0.00 0.00 0.00 3.86
5724 6786 4.041567 TCCAGGATGAGCAACTACAGAAAA 59.958 41.667 0.00 0.00 39.69 2.29
5773 6835 5.278463 CCTCTCTAGCTGCAGAAGAATCTAC 60.278 48.000 20.43 0.00 33.50 2.59
5834 6896 7.434927 TGACACAGAGGTATAGTAGACTACT 57.565 40.000 18.87 18.87 42.68 2.57
5850 6916 6.660887 AGACTACTACTTCAAGCTACGTAC 57.339 41.667 0.00 0.00 0.00 3.67
5879 6947 4.335416 TGAACTTTATTGGAGCCCTCTTG 58.665 43.478 0.00 0.00 0.00 3.02
5881 6949 5.013704 TGAACTTTATTGGAGCCCTCTTGTA 59.986 40.000 0.00 0.00 0.00 2.41
5919 6987 9.403110 GCCATATTTATTGTGCTTTCTTCTATG 57.597 33.333 0.00 0.00 0.00 2.23
5920 6988 9.903682 CCATATTTATTGTGCTTTCTTCTATGG 57.096 33.333 0.00 0.00 0.00 2.74
5996 7064 2.551270 AGAGGTGTGCTTCAGGGATAA 58.449 47.619 0.00 0.00 0.00 1.75
6008 7076 5.973565 GCTTCAGGGATAATCAAATGAAACG 59.026 40.000 0.00 0.00 0.00 3.60
6015 7083 6.418819 GGGATAATCAAATGAAACGAGCAATG 59.581 38.462 0.00 0.00 0.00 2.82
6071 7300 4.504097 GCAAGAGTTGTTCCATGTTTTGTC 59.496 41.667 0.00 0.00 0.00 3.18
6089 7318 8.471609 TGTTTTGTCGATCTGTATTAGTGGATA 58.528 33.333 0.00 0.00 0.00 2.59
6125 7357 7.394077 TCACATCCTTTCAATATTCAGCTCAAA 59.606 33.333 0.00 0.00 0.00 2.69
6129 7361 5.653769 CCTTTCAATATTCAGCTCAAAGGGA 59.346 40.000 0.00 0.00 36.35 4.20
6133 7365 5.068198 TCAATATTCAGCTCAAAGGGATTGC 59.932 40.000 0.00 0.00 38.98 3.56
6137 7369 1.471684 CAGCTCAAAGGGATTGCAGAC 59.528 52.381 0.00 0.00 38.98 3.51
6167 7399 5.049167 CCTGCTGAATTCTCTGACAGTATC 58.951 45.833 7.05 0.00 33.57 2.24
6194 7426 3.834610 CTTGCAAAGCCAATCAGAGAAG 58.165 45.455 0.00 0.00 36.98 2.85
6239 7471 2.998097 CCGGAGGCCATTTCTGGA 59.002 61.111 12.15 0.00 46.14 3.86
6240 7472 1.302949 CCGGAGGCCATTTCTGGAA 59.697 57.895 12.15 0.00 46.14 3.53
6290 7522 4.099881 GGGATGCATGAAATAACACACCAT 59.900 41.667 2.46 0.00 0.00 3.55
6299 7531 0.767998 TAACACACCATGGCAGGTCA 59.232 50.000 13.04 0.00 40.77 4.02
6357 7589 1.869774 CGAATCTCCATGCCATCGAA 58.130 50.000 0.00 0.00 32.38 3.71
6371 7603 3.409570 CCATCGAATCATGGAGAGCAAT 58.590 45.455 0.00 0.00 45.79 3.56
6453 7685 0.877743 GCAGTTTGAGCCAGGAGTTC 59.122 55.000 0.00 0.00 0.00 3.01
6467 7699 5.248640 CCAGGAGTTCATGTCACACTTATT 58.751 41.667 0.00 0.00 0.00 1.40
6545 7777 4.086457 CCACCCCTTTTACTGCTTTATGT 58.914 43.478 0.00 0.00 0.00 2.29
6603 7835 5.393962 GGCATACATCTCAACAACTTGTTC 58.606 41.667 4.06 0.00 38.77 3.18
6611 7843 2.548057 TCAACAACTTGTTCGAGGCATC 59.452 45.455 4.06 0.00 38.77 3.91
6651 7883 5.278957 CCCAATAACAAAACTCTGAAGGTGG 60.279 44.000 0.00 0.00 0.00 4.61
6654 7886 2.733956 ACAAAACTCTGAAGGTGGCAA 58.266 42.857 0.00 0.00 0.00 4.52
6656 7888 1.986882 AAACTCTGAAGGTGGCAAGG 58.013 50.000 0.00 0.00 0.00 3.61
6657 7889 0.846693 AACTCTGAAGGTGGCAAGGT 59.153 50.000 0.00 0.00 0.00 3.50
6658 7890 0.109342 ACTCTGAAGGTGGCAAGGTG 59.891 55.000 0.00 0.00 0.00 4.00
6659 7891 1.228245 TCTGAAGGTGGCAAGGTGC 60.228 57.895 0.00 0.00 44.08 5.01
6660 7892 1.228367 CTGAAGGTGGCAAGGTGCT 60.228 57.895 0.00 0.00 44.28 4.40
6661 7893 0.036732 CTGAAGGTGGCAAGGTGCTA 59.963 55.000 0.00 0.00 44.28 3.49
6662 7894 0.036732 TGAAGGTGGCAAGGTGCTAG 59.963 55.000 0.00 0.00 44.28 3.42
6663 7895 0.036875 GAAGGTGGCAAGGTGCTAGT 59.963 55.000 0.00 0.00 44.28 2.57
6696 7928 7.012959 ACTTACGGTTCTTTCTCTTGAAAAC 57.987 36.000 0.00 0.00 41.09 2.43
6815 8047 2.795110 GCTCCTCGGCTCAGCATCT 61.795 63.158 0.00 0.00 33.06 2.90
6816 8048 1.821936 CTCCTCGGCTCAGCATCTT 59.178 57.895 0.00 0.00 0.00 2.40
6825 8057 1.804372 GCTCAGCATCTTCCACCTACG 60.804 57.143 0.00 0.00 0.00 3.51
6851 8083 2.686518 GAATCGCGCCGTTGATGCTC 62.687 60.000 0.00 0.00 0.00 4.26
6921 8153 3.105937 GGCGACTGTTTGTTCTTTTGAC 58.894 45.455 0.00 0.00 0.00 3.18
6927 8159 6.189677 ACTGTTTGTTCTTTTGACGATCAA 57.810 33.333 0.00 0.00 34.03 2.57
6928 8160 6.795399 ACTGTTTGTTCTTTTGACGATCAAT 58.205 32.000 0.00 0.00 36.11 2.57
6929 8161 6.912591 ACTGTTTGTTCTTTTGACGATCAATC 59.087 34.615 0.00 0.00 36.11 2.67
6931 8163 7.479980 TGTTTGTTCTTTTGACGATCAATCTT 58.520 30.769 0.00 0.00 36.11 2.40
6932 8164 7.431960 TGTTTGTTCTTTTGACGATCAATCTTG 59.568 33.333 0.00 0.00 36.11 3.02
6933 8165 6.618287 TGTTCTTTTGACGATCAATCTTGT 57.382 33.333 0.00 0.00 36.11 3.16
6934 8166 6.429624 TGTTCTTTTGACGATCAATCTTGTG 58.570 36.000 0.00 0.00 36.11 3.33
6935 8167 6.038161 TGTTCTTTTGACGATCAATCTTGTGT 59.962 34.615 0.00 0.00 36.11 3.72
6936 8168 6.618287 TCTTTTGACGATCAATCTTGTGTT 57.382 33.333 0.00 0.00 36.11 3.32
6937 8169 7.026631 TCTTTTGACGATCAATCTTGTGTTT 57.973 32.000 0.00 0.00 36.11 2.83
6938 8170 7.479980 TCTTTTGACGATCAATCTTGTGTTTT 58.520 30.769 0.00 0.00 36.11 2.43
6979 8211 5.695851 TGCTTCTTTTGGAGATCTGTTTC 57.304 39.130 0.00 0.00 33.49 2.78
6988 8220 8.648698 TTTTGGAGATCTGTTTCATTTCCATA 57.351 30.769 0.00 0.00 33.63 2.74
7037 8269 1.067060 GTTCAGGTTGGGAACACTTGC 59.933 52.381 0.00 0.00 43.16 4.01
7160 8392 1.654105 GTCCGCACACGAGTTATGAAG 59.346 52.381 0.00 0.00 43.93 3.02
7168 8400 2.932614 CACGAGTTATGAAGCTGAAGGG 59.067 50.000 0.00 0.00 0.00 3.95
7281 8513 5.007234 CGTGTCACTGTTGGTAAGAAAATCA 59.993 40.000 0.65 0.00 0.00 2.57
7376 8608 4.523943 TGTGCAAATTATGAAGCTGAACCT 59.476 37.500 0.00 0.00 0.00 3.50
7415 8647 6.253727 AGTGTAATCGCGAAAATTCAGACTAG 59.746 38.462 15.24 0.00 0.00 2.57
7420 8652 4.112634 CGCGAAAATTCAGACTAGATCCA 58.887 43.478 0.00 0.00 0.00 3.41
7467 8699 5.152097 GTTCATCTCAACATTGAACAGCAG 58.848 41.667 9.47 0.00 45.37 4.24
7468 8700 4.392047 TCATCTCAACATTGAACAGCAGT 58.608 39.130 0.00 0.00 36.64 4.40
7469 8701 5.550290 TCATCTCAACATTGAACAGCAGTA 58.450 37.500 0.00 0.00 36.64 2.74
7470 8702 5.409520 TCATCTCAACATTGAACAGCAGTAC 59.590 40.000 0.00 0.00 36.64 2.73
7481 8747 7.667043 TTGAACAGCAGTACAATAAAGTAGG 57.333 36.000 0.00 0.00 0.00 3.18
7574 8852 4.148838 TCGGAATCTGGGTTTTTGAACAT 58.851 39.130 0.00 0.00 0.00 2.71
7596 8875 1.522806 ACGCGTGCTTCAGGAAACA 60.523 52.632 12.93 0.00 0.00 2.83
7610 8889 0.112412 GAAACAAGCCCTCCCTTGGA 59.888 55.000 6.82 0.00 44.98 3.53
7632 8911 6.212993 TGGAATTCAAATTTCCATCACCATGA 59.787 34.615 7.93 0.00 30.57 3.07
7654 8933 6.781138 TGAATCGGTCGAATTAAAAAGATGG 58.219 36.000 0.00 0.00 0.00 3.51
7706 8987 3.074412 ACAAGGTCACAATCGGTTCATC 58.926 45.455 0.00 0.00 0.00 2.92
7715 8996 6.205464 GTCACAATCGGTTCATCCAATGATAT 59.795 38.462 0.00 0.00 39.39 1.63
7716 8997 7.387673 GTCACAATCGGTTCATCCAATGATATA 59.612 37.037 0.00 0.00 39.39 0.86
7717 8998 8.102676 TCACAATCGGTTCATCCAATGATATAT 58.897 33.333 0.00 0.00 39.39 0.86
7854 9139 1.047596 TCAGGATCCTCAGCCTCAGC 61.048 60.000 12.69 0.00 35.64 4.26
7927 9212 7.167302 CCCATACACAAATTACATGCATTTACG 59.833 37.037 0.00 0.00 0.00 3.18
7929 9214 4.862018 ACACAAATTACATGCATTTACGCC 59.138 37.500 0.00 0.00 0.00 5.68
7932 9217 4.935352 AATTACATGCATTTACGCCCAT 57.065 36.364 0.00 0.00 0.00 4.00
7989 9274 1.211818 GCACGGAGAGCATGATCGTC 61.212 60.000 5.12 3.79 45.32 4.20
7990 9275 0.596083 CACGGAGAGCATGATCGTCC 60.596 60.000 15.40 15.40 31.35 4.79
7991 9276 1.371022 CGGAGAGCATGATCGTCCG 60.371 63.158 26.03 26.03 43.82 4.79
7992 9277 2.033793 GGAGAGCATGATCGTCCGA 58.966 57.895 5.12 0.00 0.00 4.55
7993 9278 0.600557 GGAGAGCATGATCGTCCGAT 59.399 55.000 5.12 1.12 37.59 4.18
8036 9326 2.125512 GCTCCGCCGATGAAGTGT 60.126 61.111 0.00 0.00 0.00 3.55
8043 9333 0.179097 GCCGATGAAGTGTCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
8048 9338 1.081277 GAAGTGTCTCCCTCCCCCT 59.919 63.158 0.00 0.00 0.00 4.79
8058 9350 2.058595 CCTCCCCCTCATCGTCGTT 61.059 63.158 0.00 0.00 0.00 3.85
8070 9362 3.057104 TCATCGTCGTTTAAGCTCCTCAA 60.057 43.478 0.00 0.00 0.00 3.02
8150 9442 5.780793 AGAAGAGGTAGCAGAAGACCTTAAA 59.219 40.000 0.00 0.00 46.36 1.52
8156 9448 4.917906 AGCAGAAGACCTTAAAGATGGT 57.082 40.909 0.00 0.00 39.60 3.55
8177 9469 4.142138 GGTAGTACCATCTTCAGGTGTCTG 60.142 50.000 14.82 0.00 40.26 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.868160 CATGATACTAGTATATGATACTCCCCA 57.132 37.037 15.42 5.35 0.00 4.96
4 5 8.798402 GCATGATACTAGTATATGATACTCCCC 58.202 40.741 22.89 8.64 0.00 4.81
25 26 7.288810 TCACACACTAGTATCATATGCATGA 57.711 36.000 10.16 0.00 45.15 3.07
26 27 9.080915 GTATCACACACTAGTATCATATGCATG 57.919 37.037 10.16 0.00 0.00 4.06
27 28 9.029368 AGTATCACACACTAGTATCATATGCAT 57.971 33.333 3.79 3.79 0.00 3.96
28 29 8.409358 AGTATCACACACTAGTATCATATGCA 57.591 34.615 0.00 0.00 0.00 3.96
29 30 9.776158 GTAGTATCACACACTAGTATCATATGC 57.224 37.037 0.00 0.00 0.00 3.14
32 33 9.722184 GAGGTAGTATCACACACTAGTATCATA 57.278 37.037 0.00 0.00 0.00 2.15
33 34 7.666388 GGAGGTAGTATCACACACTAGTATCAT 59.334 40.741 0.00 0.00 0.00 2.45
34 35 6.996879 GGAGGTAGTATCACACACTAGTATCA 59.003 42.308 0.00 0.00 0.00 2.15
35 36 6.430616 GGGAGGTAGTATCACACACTAGTATC 59.569 46.154 0.00 0.00 0.00 2.24
36 37 6.102910 AGGGAGGTAGTATCACACACTAGTAT 59.897 42.308 0.00 0.00 0.00 2.12
37 38 5.431073 AGGGAGGTAGTATCACACACTAGTA 59.569 44.000 0.00 0.00 0.00 1.82
38 39 4.230041 AGGGAGGTAGTATCACACACTAGT 59.770 45.833 0.00 0.00 0.00 2.57
39 40 4.794334 AGGGAGGTAGTATCACACACTAG 58.206 47.826 0.00 0.00 0.00 2.57
40 41 4.875578 AGGGAGGTAGTATCACACACTA 57.124 45.455 0.00 0.00 0.00 2.74
41 42 3.759815 AGGGAGGTAGTATCACACACT 57.240 47.619 0.00 0.00 0.00 3.55
42 43 5.739358 GCATTAGGGAGGTAGTATCACACAC 60.739 48.000 0.00 0.00 0.00 3.82
43 44 4.344102 GCATTAGGGAGGTAGTATCACACA 59.656 45.833 0.00 0.00 0.00 3.72
44 45 4.344102 TGCATTAGGGAGGTAGTATCACAC 59.656 45.833 0.00 0.00 0.00 3.82
45 46 4.552674 TGCATTAGGGAGGTAGTATCACA 58.447 43.478 0.00 0.00 0.00 3.58
46 47 5.746990 ATGCATTAGGGAGGTAGTATCAC 57.253 43.478 0.00 0.00 0.00 3.06
47 48 6.562228 ACTATGCATTAGGGAGGTAGTATCA 58.438 40.000 3.54 0.00 31.68 2.15
48 49 8.770010 ATACTATGCATTAGGGAGGTAGTATC 57.230 38.462 3.54 0.00 31.70 2.24
92 93 9.712305 GTCATGTATGGCAATAAATAGAGTACT 57.288 33.333 0.00 0.00 31.41 2.73
93 94 9.489084 TGTCATGTATGGCAATAAATAGAGTAC 57.511 33.333 0.00 0.00 39.82 2.73
94 95 9.489084 GTGTCATGTATGGCAATAAATAGAGTA 57.511 33.333 0.03 0.00 44.94 2.59
95 96 7.992608 TGTGTCATGTATGGCAATAAATAGAGT 59.007 33.333 0.03 0.00 44.94 3.24
96 97 8.382030 TGTGTCATGTATGGCAATAAATAGAG 57.618 34.615 0.03 0.00 44.94 2.43
97 98 8.744568 TTGTGTCATGTATGGCAATAAATAGA 57.255 30.769 0.03 0.00 44.94 1.98
98 99 9.454585 CTTTGTGTCATGTATGGCAATAAATAG 57.545 33.333 0.03 0.00 44.94 1.73
99 100 8.965819 ACTTTGTGTCATGTATGGCAATAAATA 58.034 29.630 0.03 0.00 44.94 1.40
100 101 7.839907 ACTTTGTGTCATGTATGGCAATAAAT 58.160 30.769 0.03 0.00 44.94 1.40
101 102 7.225784 ACTTTGTGTCATGTATGGCAATAAA 57.774 32.000 0.03 5.59 44.94 1.40
102 103 6.832520 ACTTTGTGTCATGTATGGCAATAA 57.167 33.333 0.03 0.00 44.94 1.40
103 104 6.038161 GCTACTTTGTGTCATGTATGGCAATA 59.962 38.462 0.03 0.00 44.94 1.90
104 105 5.163622 GCTACTTTGTGTCATGTATGGCAAT 60.164 40.000 0.03 0.00 44.94 3.56
105 106 4.155826 GCTACTTTGTGTCATGTATGGCAA 59.844 41.667 0.03 0.00 44.94 4.52
106 107 3.689161 GCTACTTTGTGTCATGTATGGCA 59.311 43.478 0.00 0.00 40.61 4.92
107 108 3.689161 TGCTACTTTGTGTCATGTATGGC 59.311 43.478 0.00 0.00 0.00 4.40
108 109 7.734924 ATATGCTACTTTGTGTCATGTATGG 57.265 36.000 0.00 0.00 0.00 2.74
152 153 9.987726 AAGAGAGGATGTAGTATCATATCATGA 57.012 33.333 0.00 0.00 44.55 3.07
158 159 9.868160 TGAAGAAAGAGAGGATGTAGTATCATA 57.132 33.333 0.00 0.00 0.00 2.15
159 160 8.774546 TGAAGAAAGAGAGGATGTAGTATCAT 57.225 34.615 0.00 0.00 0.00 2.45
160 161 8.774546 ATGAAGAAAGAGAGGATGTAGTATCA 57.225 34.615 0.00 0.00 0.00 2.15
166 167 9.113838 GCATTAAATGAAGAAAGAGAGGATGTA 57.886 33.333 0.00 0.00 0.00 2.29
167 168 7.833183 AGCATTAAATGAAGAAAGAGAGGATGT 59.167 33.333 0.00 0.00 0.00 3.06
168 169 8.223177 AGCATTAAATGAAGAAAGAGAGGATG 57.777 34.615 0.00 0.00 0.00 3.51
170 171 9.334947 CATAGCATTAAATGAAGAAAGAGAGGA 57.665 33.333 0.00 0.00 0.00 3.71
171 172 8.074972 GCATAGCATTAAATGAAGAAAGAGAGG 58.925 37.037 0.00 0.00 0.00 3.69
172 173 8.074972 GGCATAGCATTAAATGAAGAAAGAGAG 58.925 37.037 0.00 0.00 0.00 3.20
173 174 7.557358 TGGCATAGCATTAAATGAAGAAAGAGA 59.443 33.333 0.00 0.00 0.00 3.10
174 175 7.646922 GTGGCATAGCATTAAATGAAGAAAGAG 59.353 37.037 0.00 0.00 0.00 2.85
175 176 7.416664 GGTGGCATAGCATTAAATGAAGAAAGA 60.417 37.037 0.00 0.00 0.00 2.52
176 177 6.698766 GGTGGCATAGCATTAAATGAAGAAAG 59.301 38.462 0.00 0.00 0.00 2.62
177 178 6.380846 AGGTGGCATAGCATTAAATGAAGAAA 59.619 34.615 0.00 0.00 0.00 2.52
178 179 5.893255 AGGTGGCATAGCATTAAATGAAGAA 59.107 36.000 0.00 0.00 0.00 2.52
179 180 5.448654 AGGTGGCATAGCATTAAATGAAGA 58.551 37.500 0.00 0.00 0.00 2.87
180 181 5.300034 TGAGGTGGCATAGCATTAAATGAAG 59.700 40.000 0.00 0.00 0.00 3.02
181 182 5.199723 TGAGGTGGCATAGCATTAAATGAA 58.800 37.500 0.00 0.00 0.00 2.57
182 183 4.790937 TGAGGTGGCATAGCATTAAATGA 58.209 39.130 0.00 0.00 0.00 2.57
183 184 5.717078 ATGAGGTGGCATAGCATTAAATG 57.283 39.130 0.00 0.00 0.00 2.32
184 185 7.838079 TTAATGAGGTGGCATAGCATTAAAT 57.162 32.000 19.77 3.09 38.04 1.40
185 186 7.652524 TTTAATGAGGTGGCATAGCATTAAA 57.347 32.000 24.35 24.35 43.46 1.52
186 187 7.652524 TTTTAATGAGGTGGCATAGCATTAA 57.347 32.000 18.88 18.88 38.75 1.40
187 188 7.838079 ATTTTAATGAGGTGGCATAGCATTA 57.162 32.000 12.02 12.02 32.13 1.90
188 189 6.736110 ATTTTAATGAGGTGGCATAGCATT 57.264 33.333 13.50 13.50 34.05 3.56
189 190 6.518493 CAATTTTAATGAGGTGGCATAGCAT 58.482 36.000 0.00 0.00 0.00 3.79
190 191 5.681954 GCAATTTTAATGAGGTGGCATAGCA 60.682 40.000 0.00 0.00 0.00 3.49
191 192 4.746611 GCAATTTTAATGAGGTGGCATAGC 59.253 41.667 0.00 0.00 0.00 2.97
192 193 6.152932 AGCAATTTTAATGAGGTGGCATAG 57.847 37.500 0.00 0.00 0.00 2.23
193 194 6.543430 AAGCAATTTTAATGAGGTGGCATA 57.457 33.333 0.00 0.00 0.00 3.14
194 195 5.425196 AAGCAATTTTAATGAGGTGGCAT 57.575 34.783 0.00 0.00 0.00 4.40
195 196 4.888326 AAGCAATTTTAATGAGGTGGCA 57.112 36.364 0.00 0.00 0.00 4.92
196 197 5.965922 ACTAAGCAATTTTAATGAGGTGGC 58.034 37.500 0.00 0.00 0.00 5.01
197 198 6.813152 CCAACTAAGCAATTTTAATGAGGTGG 59.187 38.462 0.00 0.00 0.00 4.61
198 199 6.311200 GCCAACTAAGCAATTTTAATGAGGTG 59.689 38.462 0.00 0.00 0.00 4.00
199 200 6.014669 TGCCAACTAAGCAATTTTAATGAGGT 60.015 34.615 0.00 0.00 37.28 3.85
200 201 6.397272 TGCCAACTAAGCAATTTTAATGAGG 58.603 36.000 0.00 0.00 37.28 3.86
201 202 7.464977 GCATGCCAACTAAGCAATTTTAATGAG 60.465 37.037 6.36 0.00 44.83 2.90
202 203 6.313411 GCATGCCAACTAAGCAATTTTAATGA 59.687 34.615 6.36 0.00 44.83 2.57
203 204 6.092396 TGCATGCCAACTAAGCAATTTTAATG 59.908 34.615 16.68 0.00 44.83 1.90
204 205 6.171921 TGCATGCCAACTAAGCAATTTTAAT 58.828 32.000 16.68 0.00 44.83 1.40
205 206 5.545588 TGCATGCCAACTAAGCAATTTTAA 58.454 33.333 16.68 0.00 44.83 1.52
206 207 5.144692 TGCATGCCAACTAAGCAATTTTA 57.855 34.783 16.68 0.00 44.83 1.52
207 208 4.005487 TGCATGCCAACTAAGCAATTTT 57.995 36.364 16.68 0.00 44.83 1.82
208 209 3.681593 TGCATGCCAACTAAGCAATTT 57.318 38.095 16.68 0.00 44.83 1.82
209 210 3.196039 TCATGCATGCCAACTAAGCAATT 59.804 39.130 22.25 0.00 44.83 2.32
210 211 2.761767 TCATGCATGCCAACTAAGCAAT 59.238 40.909 22.25 0.00 44.83 3.56
211 212 2.169330 TCATGCATGCCAACTAAGCAA 58.831 42.857 22.25 0.00 44.83 3.91
212 213 1.836802 TCATGCATGCCAACTAAGCA 58.163 45.000 22.25 0.00 45.94 3.91
213 214 3.567164 AGTATCATGCATGCCAACTAAGC 59.433 43.478 22.25 4.42 0.00 3.09
214 215 5.180117 GGTAGTATCATGCATGCCAACTAAG 59.820 44.000 24.68 3.62 0.00 2.18
215 216 5.063204 GGTAGTATCATGCATGCCAACTAA 58.937 41.667 24.68 9.84 0.00 2.24
216 217 4.347876 AGGTAGTATCATGCATGCCAACTA 59.652 41.667 22.25 21.88 0.00 2.24
217 218 3.137176 AGGTAGTATCATGCATGCCAACT 59.863 43.478 22.25 22.78 0.00 3.16
218 219 3.480470 AGGTAGTATCATGCATGCCAAC 58.520 45.455 22.25 17.59 0.00 3.77
219 220 3.862877 AGGTAGTATCATGCATGCCAA 57.137 42.857 22.25 5.34 0.00 4.52
220 221 4.531732 TCATAGGTAGTATCATGCATGCCA 59.468 41.667 22.25 8.84 0.00 4.92
221 222 5.089970 TCATAGGTAGTATCATGCATGCC 57.910 43.478 22.25 15.40 0.00 4.40
222 223 7.495901 AGTATCATAGGTAGTATCATGCATGC 58.504 38.462 22.25 11.82 0.00 4.06
223 224 9.958234 GTAGTATCATAGGTAGTATCATGCATG 57.042 37.037 21.07 21.07 0.00 4.06
224 225 9.137459 GGTAGTATCATAGGTAGTATCATGCAT 57.863 37.037 0.00 0.00 0.00 3.96
225 226 8.113462 TGGTAGTATCATAGGTAGTATCATGCA 58.887 37.037 0.00 0.00 0.00 3.96
226 227 8.521170 TGGTAGTATCATAGGTAGTATCATGC 57.479 38.462 0.00 0.00 0.00 4.06
232 233 9.658799 GTCGTAATGGTAGTATCATAGGTAGTA 57.341 37.037 0.00 0.00 0.00 1.82
233 234 7.609532 GGTCGTAATGGTAGTATCATAGGTAGT 59.390 40.741 0.00 0.00 0.00 2.73
234 235 7.609146 TGGTCGTAATGGTAGTATCATAGGTAG 59.391 40.741 0.00 0.00 0.00 3.18
235 236 7.460910 TGGTCGTAATGGTAGTATCATAGGTA 58.539 38.462 0.00 0.00 0.00 3.08
236 237 6.309357 TGGTCGTAATGGTAGTATCATAGGT 58.691 40.000 0.00 0.00 0.00 3.08
237 238 6.625300 GCTGGTCGTAATGGTAGTATCATAGG 60.625 46.154 0.00 0.00 0.00 2.57
238 239 6.323266 GCTGGTCGTAATGGTAGTATCATAG 58.677 44.000 0.00 0.00 0.00 2.23
239 240 5.184479 GGCTGGTCGTAATGGTAGTATCATA 59.816 44.000 0.00 0.00 0.00 2.15
240 241 4.021368 GGCTGGTCGTAATGGTAGTATCAT 60.021 45.833 0.00 0.00 0.00 2.45
241 242 3.319972 GGCTGGTCGTAATGGTAGTATCA 59.680 47.826 0.00 0.00 0.00 2.15
242 243 3.573110 AGGCTGGTCGTAATGGTAGTATC 59.427 47.826 0.00 0.00 0.00 2.24
243 244 3.573695 AGGCTGGTCGTAATGGTAGTAT 58.426 45.455 0.00 0.00 0.00 2.12
244 245 3.022557 AGGCTGGTCGTAATGGTAGTA 57.977 47.619 0.00 0.00 0.00 1.82
245 246 1.861982 AGGCTGGTCGTAATGGTAGT 58.138 50.000 0.00 0.00 0.00 2.73
246 247 2.981859 AAGGCTGGTCGTAATGGTAG 57.018 50.000 0.00 0.00 0.00 3.18
247 248 3.368248 ACTAAGGCTGGTCGTAATGGTA 58.632 45.455 0.00 0.00 0.00 3.25
248 249 2.185387 ACTAAGGCTGGTCGTAATGGT 58.815 47.619 0.00 0.00 0.00 3.55
249 250 2.981859 ACTAAGGCTGGTCGTAATGG 57.018 50.000 0.00 0.00 0.00 3.16
250 251 4.380841 TGTACTAAGGCTGGTCGTAATG 57.619 45.455 0.00 0.00 0.00 1.90
251 252 5.609533 ATTGTACTAAGGCTGGTCGTAAT 57.390 39.130 0.00 0.00 0.00 1.89
252 253 5.410355 AATTGTACTAAGGCTGGTCGTAA 57.590 39.130 0.00 0.00 0.00 3.18
253 254 5.410355 AAATTGTACTAAGGCTGGTCGTA 57.590 39.130 0.00 0.00 0.00 3.43
254 255 3.975168 AATTGTACTAAGGCTGGTCGT 57.025 42.857 0.00 0.00 0.00 4.34
255 256 6.920569 ATAAAATTGTACTAAGGCTGGTCG 57.079 37.500 0.00 0.00 0.00 4.79
256 257 8.726870 TGTATAAAATTGTACTAAGGCTGGTC 57.273 34.615 0.00 0.00 0.00 4.02
257 258 9.174166 CTTGTATAAAATTGTACTAAGGCTGGT 57.826 33.333 0.00 0.00 0.00 4.00
258 259 9.391006 TCTTGTATAAAATTGTACTAAGGCTGG 57.609 33.333 0.00 0.00 0.00 4.85
260 261 9.110502 GCTCTTGTATAAAATTGTACTAAGGCT 57.889 33.333 0.00 0.00 0.00 4.58
261 262 9.110502 AGCTCTTGTATAAAATTGTACTAAGGC 57.889 33.333 0.00 8.36 0.00 4.35
277 278 9.372369 GTCTCAACTTTGTATTAGCTCTTGTAT 57.628 33.333 0.00 0.00 0.00 2.29
278 279 8.364894 TGTCTCAACTTTGTATTAGCTCTTGTA 58.635 33.333 0.00 0.00 0.00 2.41
279 280 7.171678 GTGTCTCAACTTTGTATTAGCTCTTGT 59.828 37.037 0.00 0.00 0.00 3.16
280 281 7.386299 AGTGTCTCAACTTTGTATTAGCTCTTG 59.614 37.037 0.00 0.00 0.00 3.02
281 282 7.445945 AGTGTCTCAACTTTGTATTAGCTCTT 58.554 34.615 0.00 0.00 0.00 2.85
282 283 6.998802 AGTGTCTCAACTTTGTATTAGCTCT 58.001 36.000 0.00 0.00 0.00 4.09
283 284 7.659652 AAGTGTCTCAACTTTGTATTAGCTC 57.340 36.000 0.00 0.00 37.05 4.09
284 285 9.726438 AATAAGTGTCTCAACTTTGTATTAGCT 57.274 29.630 0.00 0.00 40.77 3.32
290 291 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
291 292 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
292 293 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
293 294 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
294 295 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
295 296 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
296 297 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
297 298 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
298 299 5.243060 TCTCCGTCTCAAAATAAGTGTCTCA 59.757 40.000 0.00 0.00 0.00 3.27
299 300 5.710984 TCTCCGTCTCAAAATAAGTGTCTC 58.289 41.667 0.00 0.00 0.00 3.36
300 301 5.477291 TCTCTCCGTCTCAAAATAAGTGTCT 59.523 40.000 0.00 0.00 0.00 3.41
301 302 5.710984 TCTCTCCGTCTCAAAATAAGTGTC 58.289 41.667 0.00 0.00 0.00 3.67
302 303 5.244178 ACTCTCTCCGTCTCAAAATAAGTGT 59.756 40.000 0.00 0.00 0.00 3.55
303 304 5.715070 ACTCTCTCCGTCTCAAAATAAGTG 58.285 41.667 0.00 0.00 0.00 3.16
304 305 5.986501 ACTCTCTCCGTCTCAAAATAAGT 57.013 39.130 0.00 0.00 0.00 2.24
305 306 7.484975 ACATACTCTCTCCGTCTCAAAATAAG 58.515 38.462 0.00 0.00 0.00 1.73
306 307 7.406031 ACATACTCTCTCCGTCTCAAAATAA 57.594 36.000 0.00 0.00 0.00 1.40
307 308 7.406031 AACATACTCTCTCCGTCTCAAAATA 57.594 36.000 0.00 0.00 0.00 1.40
308 309 5.923733 ACATACTCTCTCCGTCTCAAAAT 57.076 39.130 0.00 0.00 0.00 1.82
309 310 5.723672 AACATACTCTCTCCGTCTCAAAA 57.276 39.130 0.00 0.00 0.00 2.44
310 311 6.178324 TCTAACATACTCTCTCCGTCTCAAA 58.822 40.000 0.00 0.00 0.00 2.69
311 312 5.742063 TCTAACATACTCTCTCCGTCTCAA 58.258 41.667 0.00 0.00 0.00 3.02
312 313 5.354842 TCTAACATACTCTCTCCGTCTCA 57.645 43.478 0.00 0.00 0.00 3.27
313 314 5.237779 CCTTCTAACATACTCTCTCCGTCTC 59.762 48.000 0.00 0.00 0.00 3.36
314 315 5.127491 CCTTCTAACATACTCTCTCCGTCT 58.873 45.833 0.00 0.00 0.00 4.18
315 316 4.276431 CCCTTCTAACATACTCTCTCCGTC 59.724 50.000 0.00 0.00 0.00 4.79
316 317 4.208746 CCCTTCTAACATACTCTCTCCGT 58.791 47.826 0.00 0.00 0.00 4.69
317 318 3.004944 GCCCTTCTAACATACTCTCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
318 319 3.322541 GGCCCTTCTAACATACTCTCTCC 59.677 52.174 0.00 0.00 0.00 3.71
319 320 4.038642 CAGGCCCTTCTAACATACTCTCTC 59.961 50.000 0.00 0.00 0.00 3.20
320 321 3.964031 CAGGCCCTTCTAACATACTCTCT 59.036 47.826 0.00 0.00 0.00 3.10
321 322 3.493524 GCAGGCCCTTCTAACATACTCTC 60.494 52.174 0.00 0.00 0.00 3.20
322 323 2.436173 GCAGGCCCTTCTAACATACTCT 59.564 50.000 0.00 0.00 0.00 3.24
323 324 2.170607 TGCAGGCCCTTCTAACATACTC 59.829 50.000 0.00 0.00 0.00 2.59
445 456 7.834181 AGTATGTAGAAAAAGGGCACAATACAT 59.166 33.333 0.00 0.00 36.74 2.29
454 465 5.527951 GCTCCTTAGTATGTAGAAAAAGGGC 59.472 44.000 0.00 0.00 35.31 5.19
468 480 7.335924 ACAAATATTTTTCGCTGCTCCTTAGTA 59.664 33.333 0.00 0.00 0.00 1.82
478 492 6.066410 CACAAAGCACAAATATTTTTCGCTG 58.934 36.000 13.66 8.02 33.20 5.18
533 547 2.501723 AGCACATACTAGGTCAACTGGG 59.498 50.000 0.00 0.00 30.80 4.45
649 669 5.612725 TTTTGAAGTGGCTTCCTGATTTT 57.387 34.783 6.44 0.00 39.51 1.82
655 675 4.039609 CCTTGATTTTTGAAGTGGCTTCCT 59.960 41.667 6.44 0.00 39.51 3.36
666 687 5.072329 ACTCTCTCTGTCCCTTGATTTTTGA 59.928 40.000 0.00 0.00 0.00 2.69
670 691 4.163427 TCACTCTCTCTGTCCCTTGATTT 58.837 43.478 0.00 0.00 0.00 2.17
679 700 8.610896 CCATTTAATTCATTCACTCTCTCTGTC 58.389 37.037 0.00 0.00 0.00 3.51
747 784 8.516234 TGTTTAACTTATATTCACGCAACCATT 58.484 29.630 0.00 0.00 0.00 3.16
774 816 7.767198 CCCGAAATCTGGTCTTACTTACAAATA 59.233 37.037 0.00 0.00 0.00 1.40
775 817 6.598064 CCCGAAATCTGGTCTTACTTACAAAT 59.402 38.462 0.00 0.00 0.00 2.32
798 840 2.243736 TCCCCCTCATAACAACAATCCC 59.756 50.000 0.00 0.00 0.00 3.85
835 879 4.689345 CGTGGACTCCGAAAAGATTAACTT 59.311 41.667 0.00 0.00 40.98 2.66
844 888 2.409975 GTGATTCGTGGACTCCGAAAA 58.590 47.619 0.00 0.00 46.14 2.29
871 915 7.553044 CCCCCATTAGTTTTACTAGCATATAGC 59.447 40.741 0.00 0.00 46.19 2.97
872 916 8.603304 ACCCCCATTAGTTTTACTAGCATATAG 58.397 37.037 0.00 0.00 31.47 1.31
873 917 8.514533 ACCCCCATTAGTTTTACTAGCATATA 57.485 34.615 0.00 0.00 31.47 0.86
876 920 5.727243 ACCCCCATTAGTTTTACTAGCAT 57.273 39.130 0.00 0.00 31.47 3.79
877 921 5.965705 TCTACCCCCATTAGTTTTACTAGCA 59.034 40.000 0.00 0.00 31.47 3.49
878 922 6.490241 TCTACCCCCATTAGTTTTACTAGC 57.510 41.667 0.00 0.00 31.47 3.42
879 923 9.557061 GATTTCTACCCCCATTAGTTTTACTAG 57.443 37.037 0.00 0.00 31.47 2.57
881 925 7.185856 AGGATTTCTACCCCCATTAGTTTTACT 59.814 37.037 0.00 0.00 0.00 2.24
882 926 7.351952 AGGATTTCTACCCCCATTAGTTTTAC 58.648 38.462 0.00 0.00 0.00 2.01
884 928 6.417503 AGGATTTCTACCCCCATTAGTTTT 57.582 37.500 0.00 0.00 0.00 2.43
887 931 3.981375 GGAGGATTTCTACCCCCATTAGT 59.019 47.826 0.00 0.00 0.00 2.24
888 932 3.008049 CGGAGGATTTCTACCCCCATTAG 59.992 52.174 0.00 0.00 0.00 1.73
889 933 2.976882 CGGAGGATTTCTACCCCCATTA 59.023 50.000 0.00 0.00 0.00 1.90
895 1356 4.141779 ACATACAACGGAGGATTTCTACCC 60.142 45.833 0.00 0.00 0.00 3.69
896 1357 4.809426 CACATACAACGGAGGATTTCTACC 59.191 45.833 0.00 0.00 0.00 3.18
900 1361 2.354821 GGCACATACAACGGAGGATTTC 59.645 50.000 0.00 0.00 0.00 2.17
910 1371 1.997606 GACTACACCGGCACATACAAC 59.002 52.381 0.00 0.00 0.00 3.32
914 1375 3.688694 AAAAGACTACACCGGCACATA 57.311 42.857 0.00 0.00 0.00 2.29
938 1399 3.142174 TGCATGTGGTTGAACGTCATAA 58.858 40.909 0.00 0.00 0.00 1.90
940 1401 1.603456 TGCATGTGGTTGAACGTCAT 58.397 45.000 0.00 0.00 0.00 3.06
954 1415 5.064198 CCCATTTTTAGAAACTGCATGCATG 59.936 40.000 22.97 22.70 0.00 4.06
968 1429 3.511146 ACACACATGCTCCCCATTTTTAG 59.489 43.478 0.00 0.00 29.71 1.85
975 1436 2.435663 CCACACACATGCTCCCCA 59.564 61.111 0.00 0.00 0.00 4.96
976 1437 1.973281 CACCACACACATGCTCCCC 60.973 63.158 0.00 0.00 0.00 4.81
1028 1489 2.768344 GGATTGCCGGGGAGGAGA 60.768 66.667 2.18 0.00 45.00 3.71
1144 1605 0.031111 ATTCGGTGGATGGGAGGAGA 60.031 55.000 0.00 0.00 0.00 3.71
1242 1707 1.593479 GGGGCATTACGAGGTACGC 60.593 63.158 0.00 0.00 46.94 4.42
1245 1710 0.618107 TGGTGGGGCATTACGAGGTA 60.618 55.000 0.00 0.00 0.00 3.08
1364 1829 1.532794 AACCGGCCCAATCAAAGCA 60.533 52.632 0.00 0.00 0.00 3.91
1380 1845 0.602905 CAGGGACGGACTGGAACAAC 60.603 60.000 0.00 0.00 38.70 3.32
1383 1848 2.047179 GCAGGGACGGACTGGAAC 60.047 66.667 5.61 0.00 36.48 3.62
1436 1905 4.116238 GAGGGAGAATCTGATCGAACAAC 58.884 47.826 0.00 0.00 33.73 3.32
1475 1944 3.567797 GCAGCGCCAACCGAGATC 61.568 66.667 2.29 0.00 40.02 2.75
1505 1974 4.555348 AAACTGTCGAAAATAAACCGCA 57.445 36.364 0.00 0.00 0.00 5.69
1523 1992 5.796350 AATCTACGGAATGTGCACTAAAC 57.204 39.130 19.41 6.85 0.00 2.01
1558 2027 1.302752 GCAGATGTCACCAGGCACA 60.303 57.895 0.00 0.00 0.00 4.57
1619 2088 2.265589 AACTGTAAAAGGGGGACACG 57.734 50.000 0.00 0.00 0.00 4.49
1628 2097 7.129622 TCTATCACGCACAAAAACTGTAAAAG 58.870 34.615 0.00 0.00 36.10 2.27
1636 2105 6.416455 TGAAACATTCTATCACGCACAAAAAC 59.584 34.615 0.00 0.00 0.00 2.43
1645 2114 6.035435 CAGAACTCCTGAAACATTCTATCACG 59.965 42.308 0.00 0.00 45.78 4.35
1714 2184 6.377327 AGCAACGAATTCGGATATCAAAAT 57.623 33.333 29.79 3.67 44.95 1.82
1731 2201 2.012937 TGTTCCCGGTAATAGCAACG 57.987 50.000 0.00 0.00 0.00 4.10
1804 2624 9.806203 ATATGTAAACATGGAAATGTCAACATG 57.194 29.630 19.22 0.00 44.61 3.21
1844 2664 9.810545 CACTGTTCCAAAACTATTTAAAAAGGA 57.189 29.630 0.00 0.00 36.30 3.36
1846 2666 9.092876 TGCACTGTTCCAAAACTATTTAAAAAG 57.907 29.630 0.00 0.00 36.30 2.27
1895 2715 1.750399 GCATCCCCATTGCGAGTGT 60.750 57.895 0.00 0.00 0.00 3.55
2174 2999 7.352739 GCCTTTCGGACATGTAAAATATAGTG 58.647 38.462 0.00 0.00 0.00 2.74
2300 3125 2.634600 GACACTGGTACCACACAAACA 58.365 47.619 11.60 0.00 0.00 2.83
2316 3142 7.047891 TCATCCTGTAATAAGAACATGGACAC 58.952 38.462 0.00 0.00 31.47 3.67
2320 3146 7.770433 TGTTCTCATCCTGTAATAAGAACATGG 59.230 37.037 10.71 0.00 44.42 3.66
2402 3228 4.080863 ACAGTCTGAGACACTTTTCCTTGT 60.081 41.667 15.86 4.02 34.60 3.16
2415 3241 1.880675 GACACGGAAGACAGTCTGAGA 59.119 52.381 6.91 0.00 0.00 3.27
2436 3262 6.093219 CAGTTCTCTGTCCAGGTATGATTTTG 59.907 42.308 0.00 0.00 36.97 2.44
2471 3297 5.413213 CCAACGGTTAACTGATCAATGGTAA 59.587 40.000 21.29 0.00 0.00 2.85
2477 3303 3.142951 CCACCAACGGTTAACTGATCAA 58.857 45.455 21.29 0.00 31.02 2.57
2607 3634 5.245751 TCAAAGAAAGGGCAAATGCATAAGA 59.754 36.000 0.00 0.00 44.36 2.10
2624 3651 5.197451 TCCTAAAAACAGCCTGTCAAAGAA 58.803 37.500 0.00 0.00 0.00 2.52
2705 3733 1.271856 TACCAGATCAAGGGAACGCA 58.728 50.000 8.82 0.00 0.00 5.24
2706 3734 2.396590 TTACCAGATCAAGGGAACGC 57.603 50.000 8.82 0.00 0.00 4.84
2834 3862 2.036346 GCTTGATCCTTGCAAACCTGTT 59.964 45.455 0.00 0.00 0.00 3.16
2903 3931 4.231718 TCTGTTGGAAAATTTACACGGC 57.768 40.909 0.00 0.00 0.00 5.68
3059 4088 9.733556 TGCAAAAGGACTTAACTAATTGATAGA 57.266 29.630 0.00 0.00 35.47 1.98
3122 4153 3.256136 GCACCTCACAAGTCACTAGTAGT 59.744 47.826 0.00 0.00 0.00 2.73
3149 4180 5.432060 ACATTATTGGGTAGCTTAGGGAAGT 59.568 40.000 0.00 0.00 34.90 3.01
3162 4193 4.521256 AGTTTACGTGCAACATTATTGGGT 59.479 37.500 13.21 0.00 35.74 4.51
3173 4204 8.991243 AGATAAGTAACATAGTTTACGTGCAA 57.009 30.769 0.00 0.00 37.10 4.08
3254 4285 4.220821 ACAGGACTGTCGTAAATCACATCT 59.779 41.667 2.30 0.00 40.24 2.90
3378 4410 0.539051 ACTCTCCAATCTTCGCCTGG 59.461 55.000 0.00 0.00 0.00 4.45
3384 4416 3.935828 GTGTAAGCCACTCTCCAATCTTC 59.064 47.826 0.00 0.00 41.11 2.87
3430 4462 2.825189 GCGATACGCGTGTTAAACAAA 58.175 42.857 24.59 0.00 44.55 2.83
3449 4481 2.306847 TGGGACACTTCCTGAAAAAGC 58.693 47.619 0.00 0.00 42.38 3.51
3500 4532 3.625764 TGCGGTTAATACTTGAGGCAATC 59.374 43.478 0.00 0.00 0.00 2.67
3523 4555 4.211374 CGCCATAACCAGCTGAGTAATAAC 59.789 45.833 17.39 2.09 0.00 1.89
3638 4670 0.969149 TAGGGACGCTGCTGGATATG 59.031 55.000 1.57 0.00 0.00 1.78
3641 4673 0.978146 AACTAGGGACGCTGCTGGAT 60.978 55.000 1.57 0.00 0.00 3.41
3651 4683 3.055747 CCTTGACTGGAAGAACTAGGGAC 60.056 52.174 0.00 0.00 37.43 4.46
3752 4784 3.960102 AGCACAAAAAGTTTGAGGATCCA 59.040 39.130 15.82 0.00 0.00 3.41
3890 4922 2.781174 ACCAAGTTCTTCACCCCAAGTA 59.219 45.455 0.00 0.00 0.00 2.24
3965 4997 2.221055 CACGTTGGACACTGCTAAAGAC 59.779 50.000 0.00 0.00 0.00 3.01
4004 5036 6.425114 CAGTTACAGCACAAGTATGAAACTCT 59.575 38.462 0.00 0.00 37.50 3.24
4073 5105 0.183492 GGCCATGTCCTAGCAATCCA 59.817 55.000 0.00 0.00 0.00 3.41
4172 5204 4.565531 GCAAGTGCTGAATGCCAC 57.434 55.556 0.00 0.00 42.00 5.01
4298 5330 4.209452 TGCAACTTTCATCGTTCTGAAC 57.791 40.909 10.48 10.48 34.96 3.18
4326 5358 0.390209 ATTGCTGCGGAATGCCAAAC 60.390 50.000 0.00 0.00 45.60 2.93
4427 5459 0.543749 CCTCCTTGTCTCCATGACCC 59.456 60.000 0.00 0.00 44.75 4.46
4463 5495 2.451490 TCAACAAGGGCTTGAACAACA 58.549 42.857 0.00 0.00 42.93 3.33
4712 5744 2.403031 ATTGGCCCCCATACCCCAG 61.403 63.158 0.00 0.00 31.53 4.45
4778 5810 0.162294 GGTCTTTTAACGCGTCCACG 59.838 55.000 14.44 0.11 43.27 4.94
4787 5819 6.477742 ACTTTTAACGTGACGGTCTTTTAAC 58.522 36.000 10.66 0.00 0.00 2.01
4904 5936 3.716601 CCGCTTTCTTGTGAAACCAAAT 58.283 40.909 0.00 0.00 37.27 2.32
4923 5955 2.090349 CGCAATTGTAACAATTGTGCCG 59.910 45.455 12.82 15.76 40.03 5.69
5207 6239 6.372659 TCTCACTTCTAACTGATTTTGCATCC 59.627 38.462 0.00 0.00 0.00 3.51
5302 6334 5.395214 CCCATTCCCATAGGCTTTACAAAAC 60.395 44.000 0.00 0.00 0.00 2.43
5363 6404 3.181408 CCATTCCCATTCCCATTCCCATA 60.181 47.826 0.00 0.00 0.00 2.74
5369 6431 1.939511 ACTCCCATTCCCATTCCCATT 59.060 47.619 0.00 0.00 0.00 3.16
5420 6482 4.494484 TCTTATGAGATTGTGACACCACG 58.506 43.478 2.45 0.00 46.06 4.94
5454 6516 0.390340 GCACTCGTCATTGCTGGAGA 60.390 55.000 5.74 0.00 35.74 3.71
5466 6528 3.728076 TTTAACAGACAGAGCACTCGT 57.272 42.857 0.00 0.00 34.09 4.18
5468 6530 5.050490 TCACTTTTAACAGACAGAGCACTC 58.950 41.667 0.00 0.00 0.00 3.51
5705 6767 4.997395 TCTGTTTTCTGTAGTTGCTCATCC 59.003 41.667 0.00 0.00 0.00 3.51
5724 6786 3.187432 GCGCTTTTAGCTCTTCTTTCTGT 59.813 43.478 0.00 0.00 39.60 3.41
5773 6835 1.135315 CCAACATGGAATTGCGTCTGG 60.135 52.381 0.00 3.29 40.96 3.86
5834 6896 3.058016 AGTTGCGTACGTAGCTTGAAGTA 60.058 43.478 16.37 0.00 35.28 2.24
5840 6906 2.427232 TCAAGTTGCGTACGTAGCTT 57.573 45.000 25.07 25.07 32.42 3.74
5842 6908 2.056577 AGTTCAAGTTGCGTACGTAGC 58.943 47.619 17.90 14.84 0.00 3.58
5846 6912 4.843984 CCAATAAAGTTCAAGTTGCGTACG 59.156 41.667 11.84 11.84 0.00 3.67
5847 6913 5.992729 TCCAATAAAGTTCAAGTTGCGTAC 58.007 37.500 0.00 0.00 0.00 3.67
5850 6916 3.914364 GCTCCAATAAAGTTCAAGTTGCG 59.086 43.478 0.00 0.00 0.00 4.85
5879 6947 8.400947 CAATAAATATGGCAGCATGATAGGTAC 58.599 37.037 0.00 0.00 39.69 3.34
5881 6949 6.950041 ACAATAAATATGGCAGCATGATAGGT 59.050 34.615 0.00 0.00 39.69 3.08
5959 7027 9.301153 GCACACCTCTTATTGTATTTTTATTGG 57.699 33.333 0.00 0.00 0.00 3.16
5996 7064 4.460382 ACCTCATTGCTCGTTTCATTTGAT 59.540 37.500 0.00 0.00 0.00 2.57
6015 7083 9.392259 AGCCACTAAATACAAAAGTAATACCTC 57.608 33.333 0.00 0.00 0.00 3.85
6058 7287 7.822334 ACTAATACAGATCGACAAAACATGGAA 59.178 33.333 0.00 0.00 0.00 3.53
6071 7300 9.776158 GTTATGAGTATCCACTAATACAGATCG 57.224 37.037 0.00 0.00 34.21 3.69
6089 7318 9.911788 ATATTGAAAGGATGTGAAGTTATGAGT 57.088 29.630 0.00 0.00 0.00 3.41
6103 7335 6.323225 CCCTTTGAGCTGAATATTGAAAGGAT 59.677 38.462 0.00 0.00 40.19 3.24
6125 7357 0.610232 GCACCTTGTCTGCAATCCCT 60.610 55.000 0.00 0.00 34.56 4.20
6129 7361 2.649831 CAGGCACCTTGTCTGCAAT 58.350 52.632 0.00 0.00 43.65 3.56
6137 7369 1.471684 GAGAATTCAGCAGGCACCTTG 59.528 52.381 8.44 0.00 0.00 3.61
6167 7399 3.719924 TGATTGGCTTTGCAAGTCTTTG 58.280 40.909 0.00 0.00 37.36 2.77
6203 7435 1.899814 GGTGGATGACTACACTGTCCA 59.100 52.381 0.00 0.00 37.72 4.02
6219 7451 1.750399 CAGAAATGGCCTCCGGTGG 60.750 63.158 18.51 18.51 0.00 4.61
6239 7471 0.678048 GGAGGCGAGGCTGTTCATTT 60.678 55.000 3.24 0.00 0.00 2.32
6240 7472 1.078143 GGAGGCGAGGCTGTTCATT 60.078 57.895 3.24 0.00 0.00 2.57
6290 7522 1.222661 CATGCTAGCTGACCTGCCA 59.777 57.895 17.23 0.00 0.00 4.92
6299 7531 0.839946 CCAGGTTACCCATGCTAGCT 59.160 55.000 17.23 0.00 0.00 3.32
6315 7547 1.271543 TGTCAAGGAAGTGCCATCCAG 60.272 52.381 0.00 0.00 39.55 3.86
6325 7557 2.675348 GGAGATTCGCTTGTCAAGGAAG 59.325 50.000 14.40 0.00 0.00 3.46
6357 7589 1.424302 CCTCCCATTGCTCTCCATGAT 59.576 52.381 0.00 0.00 0.00 2.45
6453 7685 5.173664 TCTCAGCTGAATAAGTGTGACATG 58.826 41.667 18.85 0.52 0.00 3.21
6467 7699 2.640302 GGTGCCGTCTCTCAGCTGA 61.640 63.158 17.19 17.19 0.00 4.26
6574 7806 2.092968 TGTTGAGATGTATGCCCCTCAC 60.093 50.000 0.00 0.00 35.63 3.51
6579 7811 3.758554 ACAAGTTGTTGAGATGTATGCCC 59.241 43.478 1.64 0.00 37.10 5.36
6603 7835 3.123804 GTTATGTGGTACAGATGCCTCG 58.876 50.000 0.00 0.00 44.11 4.63
6611 7843 6.431543 TGTTATTGGGTTGTTATGTGGTACAG 59.568 38.462 0.00 0.00 41.80 2.74
6658 7890 6.700520 AGAACCGTAAGTAAATATGCACTAGC 59.299 38.462 0.00 0.00 42.57 3.42
6659 7891 8.644318 AAGAACCGTAAGTAAATATGCACTAG 57.356 34.615 0.00 0.00 0.00 2.57
6660 7892 9.090692 GAAAGAACCGTAAGTAAATATGCACTA 57.909 33.333 0.00 0.00 0.00 2.74
6661 7893 7.822822 AGAAAGAACCGTAAGTAAATATGCACT 59.177 33.333 0.00 0.00 0.00 4.40
6662 7894 7.971455 AGAAAGAACCGTAAGTAAATATGCAC 58.029 34.615 0.00 0.00 0.00 4.57
6663 7895 8.038944 AGAGAAAGAACCGTAAGTAAATATGCA 58.961 33.333 0.00 0.00 0.00 3.96
6696 7928 4.331168 CGAATCTCCTCTTGCTAACAAAGG 59.669 45.833 0.00 0.00 34.74 3.11
6803 8035 1.817099 GGTGGAAGATGCTGAGCCG 60.817 63.158 0.23 0.00 0.00 5.52
6815 8047 1.236616 TTCGTCTCGCGTAGGTGGAA 61.237 55.000 5.77 0.96 42.13 3.53
6816 8048 1.028330 ATTCGTCTCGCGTAGGTGGA 61.028 55.000 5.77 0.00 42.13 4.02
6861 8093 3.177884 AGCTGGCAGTGGGGAACA 61.178 61.111 17.16 0.00 0.00 3.18
6962 8194 6.985117 TGGAAATGAAACAGATCTCCAAAAG 58.015 36.000 0.00 0.00 0.00 2.27
6970 8202 6.603201 TCAAGGGTATGGAAATGAAACAGATC 59.397 38.462 0.00 0.00 0.00 2.75
6973 8205 5.393461 GCTCAAGGGTATGGAAATGAAACAG 60.393 44.000 0.00 0.00 0.00 3.16
6979 8211 3.303351 AGGCTCAAGGGTATGGAAATG 57.697 47.619 0.00 0.00 0.00 2.32
6988 8220 1.341383 CCAGCAAATAGGCTCAAGGGT 60.341 52.381 0.00 0.00 43.68 4.34
7037 8269 2.032528 TCGCTGGGAAGCCACAAG 59.967 61.111 0.00 0.00 0.00 3.16
7281 8513 9.071276 CATATGTTCCATAGCCAATTCTAGTTT 57.929 33.333 0.00 0.00 0.00 2.66
7306 8538 3.312828 GTTGCCAATGTTTTGATACGCA 58.687 40.909 0.00 0.00 34.60 5.24
7318 8550 3.068560 CACTTTTGGATGGTTGCCAATG 58.931 45.455 0.00 0.00 44.30 2.82
7376 8608 5.350365 GCGATTACACTGTTACCAAGAATGA 59.650 40.000 0.00 0.00 0.00 2.57
7415 8647 5.472137 TGCGGCCTTATTAACTTTATGGATC 59.528 40.000 0.00 0.00 0.00 3.36
7420 8652 5.705609 CCATGCGGCCTTATTAACTTTAT 57.294 39.130 0.00 0.00 0.00 1.40
7445 8677 4.823442 ACTGCTGTTCAATGTTGAGATGAA 59.177 37.500 0.00 0.00 38.61 2.57
7481 8747 8.581578 TCCTTGTCTTGGTATTTAATGGTTTTC 58.418 33.333 0.00 0.00 0.00 2.29
7494 8760 5.827756 TCTGAGAGTATCCTTGTCTTGGTA 58.172 41.667 0.00 0.00 33.66 3.25
7514 8780 5.470098 TGGAAAGTCGAAAAGGATTCTTCTG 59.530 40.000 0.00 0.00 31.82 3.02
7515 8781 5.470437 GTGGAAAGTCGAAAAGGATTCTTCT 59.530 40.000 0.00 0.00 31.82 2.85
7517 8783 4.519350 GGTGGAAAGTCGAAAAGGATTCTT 59.481 41.667 0.00 0.00 34.07 2.52
7518 8784 4.072839 GGTGGAAAGTCGAAAAGGATTCT 58.927 43.478 0.00 0.00 0.00 2.40
7519 8785 4.072839 AGGTGGAAAGTCGAAAAGGATTC 58.927 43.478 0.00 0.00 0.00 2.52
7520 8786 4.100279 AGGTGGAAAGTCGAAAAGGATT 57.900 40.909 0.00 0.00 0.00 3.01
7574 8852 2.636778 TTCCTGAAGCACGCGTGACA 62.637 55.000 41.19 31.01 0.00 3.58
7596 8875 1.084018 TGAATTCCAAGGGAGGGCTT 58.916 50.000 2.27 0.00 31.21 4.35
7610 8889 7.493320 CGATTCATGGTGATGGAAATTTGAATT 59.507 33.333 0.00 0.00 33.89 2.17
7632 8911 5.883673 TCCCATCTTTTTAATTCGACCGATT 59.116 36.000 0.00 0.00 0.00 3.34
7678 8959 3.002791 CGATTGTGACCTTGTGCTATGT 58.997 45.455 0.00 0.00 0.00 2.29
7680 8961 2.027192 ACCGATTGTGACCTTGTGCTAT 60.027 45.455 0.00 0.00 0.00 2.97
7717 8998 9.138596 TGTAGCATGGTCAGTTTGTATAGTATA 57.861 33.333 0.00 0.00 0.00 1.47
7854 9139 1.202639 TGTATATTGGGCTGCGGACTG 60.203 52.381 0.00 0.00 0.00 3.51
7989 9274 3.364023 GCGTAAATACTGGAATCGATCGG 59.636 47.826 16.41 0.00 0.00 4.18
7990 9275 3.978855 TGCGTAAATACTGGAATCGATCG 59.021 43.478 9.36 9.36 0.00 3.69
7991 9276 4.150098 GGTGCGTAAATACTGGAATCGATC 59.850 45.833 0.00 0.00 0.00 3.69
7992 9277 4.056050 GGTGCGTAAATACTGGAATCGAT 58.944 43.478 0.00 0.00 0.00 3.59
7993 9278 3.119065 TGGTGCGTAAATACTGGAATCGA 60.119 43.478 0.00 0.00 0.00 3.59
7995 9280 4.393680 TGTTGGTGCGTAAATACTGGAATC 59.606 41.667 0.00 0.00 0.00 2.52
8036 9326 2.299727 GACGATGAGGGGGAGGGAGA 62.300 65.000 0.00 0.00 0.00 3.71
8043 9333 1.935933 CTTAAACGACGATGAGGGGG 58.064 55.000 0.00 0.00 0.00 5.40
8048 9338 2.490509 TGAGGAGCTTAAACGACGATGA 59.509 45.455 0.00 0.00 0.00 2.92
8058 9350 6.491403 AGAAATTCTGCTTTTGAGGAGCTTAA 59.509 34.615 0.00 0.00 40.75 1.85
8096 9388 1.804746 CGTGCCCTTCGTGCATATACA 60.805 52.381 0.00 0.00 41.46 2.29
8156 9448 4.023980 CCAGACACCTGAAGATGGTACTA 58.976 47.826 0.00 0.00 43.02 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.