Multiple sequence alignment - TraesCS1A01G366700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G366700 chr1A 100.000 7768 0 0 333 8100 545520810 545528577 0.000000e+00 14345.0
1 TraesCS1A01G366700 chr1A 89.823 226 21 2 349 574 301895978 301895755 1.030000e-73 289.0
2 TraesCS1A01G366700 chr1A 93.878 147 6 2 5510 5656 545525923 545526066 1.370000e-52 219.0
3 TraesCS1A01G366700 chr1A 93.878 147 6 2 5446 5589 545525987 545526133 1.370000e-52 219.0
4 TraesCS1A01G366700 chr1A 100.000 90 0 0 1 90 545520478 545520567 5.030000e-37 167.0
5 TraesCS1A01G366700 chr1A 93.827 81 2 2 5576 5656 545525923 545526000 1.430000e-22 119.0
6 TraesCS1A01G366700 chr1A 93.827 81 2 2 5446 5523 545526053 545526133 1.430000e-22 119.0
7 TraesCS1A01G366700 chr1B 93.402 6275 228 81 1912 8077 617817858 617824055 0.000000e+00 9123.0
8 TraesCS1A01G366700 chr1B 89.164 1292 82 26 618 1874 617816593 617817861 0.000000e+00 1557.0
9 TraesCS1A01G366700 chr1B 95.238 147 4 2 5446 5589 617821488 617821634 6.320000e-56 230.0
10 TraesCS1A01G366700 chr1B 96.296 81 0 2 5446 5523 617821554 617821634 6.600000e-26 130.0
11 TraesCS1A01G366700 chr1B 92.593 81 3 2 5576 5656 617821424 617821501 6.640000e-21 113.0
12 TraesCS1A01G366700 chr1D 93.283 4198 145 55 575 4725 450217640 450221747 0.000000e+00 6063.0
13 TraesCS1A01G366700 chr1D 93.059 2651 110 30 5516 8100 450222430 450225072 0.000000e+00 3808.0
14 TraesCS1A01G366700 chr1D 93.254 845 25 14 4759 5589 450221744 450222570 0.000000e+00 1216.0
15 TraesCS1A01G366700 chr1D 95.062 81 1 2 5446 5523 450222490 450222570 3.070000e-24 124.0
16 TraesCS1A01G366700 chr1D 96.825 63 1 1 5594 5656 450222442 450222503 4.000000e-18 104.0
17 TraesCS1A01G366700 chr1D 100.000 29 0 0 6772 6800 450224710 450224738 4.000000e-03 54.7
18 TraesCS1A01G366700 chr6A 93.074 231 16 0 347 577 454801003 454800773 1.010000e-88 339.0
19 TraesCS1A01G366700 chr4D 91.020 245 20 2 346 589 7899902 7900145 6.060000e-86 329.0
20 TraesCS1A01G366700 chr3A 90.265 226 21 1 350 574 697747673 697747448 2.210000e-75 294.0
21 TraesCS1A01G366700 chr3A 85.217 230 30 3 350 575 564428454 564428683 4.890000e-57 233.0
22 TraesCS1A01G366700 chr2A 88.618 246 18 2 340 575 6315625 6315380 2.860000e-74 291.0
23 TraesCS1A01G366700 chr2A 89.778 225 23 0 350 574 207656088 207656312 1.030000e-73 289.0
24 TraesCS1A01G366700 chr6B 88.646 229 22 2 350 574 277630839 277631067 8.010000e-70 276.0
25 TraesCS1A01G366700 chr4A 88.745 231 19 5 350 574 8589863 8590092 8.010000e-70 276.0
26 TraesCS1A01G366700 chrUn 94.340 159 8 1 425 582 962875 962717 8.120000e-60 243.0
27 TraesCS1A01G366700 chr3D 72.761 268 55 16 4665 4922 58484185 58484444 3.140000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G366700 chr1A 545520478 545528577 8099 False 2531.333333 14345 95.901667 1 8100 6 chr1A.!!$F1 8099
1 TraesCS1A01G366700 chr1B 617816593 617824055 7462 False 2230.600000 9123 93.338600 618 8077 5 chr1B.!!$F1 7459
2 TraesCS1A01G366700 chr1D 450217640 450225072 7432 False 1894.950000 6063 95.247167 575 8100 6 chr1D.!!$F1 7525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 512 0.175531 AATGCAATGCGCCCTAAACC 59.824 50.000 4.18 0.0 41.33 3.27 F
1157 1175 0.322997 TCCGCACCCAAAATCCGAAT 60.323 50.000 0.00 0.0 0.00 3.34 F
1545 1581 1.217942 AGGGCTCAAAGTTTCTGGGTT 59.782 47.619 0.00 0.0 0.00 4.11 F
1562 1598 1.355005 GTTCTCTCGCTCTTTCCTGC 58.645 55.000 0.00 0.0 0.00 4.85 F
3526 3594 1.371467 TCCTGTGATGGATGTTGGGT 58.629 50.000 0.00 0.0 0.00 4.51 F
4094 4165 0.248843 GTTGTGAGCTCCTCCTCCAG 59.751 60.000 12.15 0.0 0.00 3.86 F
5318 5450 0.111253 AGTTCTCCAAAGCCAGGTGG 59.889 55.000 0.00 0.0 36.13 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 1581 1.134877 CATGCAGGAAAGAGCGAGAGA 60.135 52.381 0.00 0.00 0.0 3.10 R
2710 2769 0.478507 CCTAAGGTGGGGCTATTGGG 59.521 60.000 0.00 0.00 0.0 4.12 R
3424 3492 4.212004 TGCACATTTCGAGAAGTTCTTCAG 59.788 41.667 6.88 2.47 0.0 3.02 R
3563 3631 1.748493 GCCCGCATGACAGGAAATAAA 59.252 47.619 0.00 0.00 0.0 1.40 R
5136 5260 1.551430 TCTTCCATTGCCCATTTGCTG 59.449 47.619 0.00 0.00 0.0 4.41 R
5847 6051 0.251341 GCTGTCTTCAATGGTGGGGT 60.251 55.000 0.00 0.00 0.0 4.95 R
7123 7357 0.179097 GCCGATGAAGTGTCTCCCTC 60.179 60.000 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.690719 CGGGCCGTGTTGCACCTA 62.691 66.667 19.97 0.00 0.00 3.08
22 23 2.746277 GGGCCGTGTTGCACCTAG 60.746 66.667 0.00 0.00 0.00 3.02
23 24 2.032071 GGCCGTGTTGCACCTAGT 59.968 61.111 0.00 0.00 0.00 2.57
24 25 2.033194 GGCCGTGTTGCACCTAGTC 61.033 63.158 0.00 0.00 0.00 2.59
25 26 2.380410 GCCGTGTTGCACCTAGTCG 61.380 63.158 0.00 0.00 0.00 4.18
26 27 1.006571 CCGTGTTGCACCTAGTCGT 60.007 57.895 0.00 0.00 0.00 4.34
27 28 0.241749 CCGTGTTGCACCTAGTCGTA 59.758 55.000 0.00 0.00 0.00 3.43
28 29 1.135199 CCGTGTTGCACCTAGTCGTAT 60.135 52.381 0.00 0.00 0.00 3.06
29 30 1.917955 CGTGTTGCACCTAGTCGTATG 59.082 52.381 0.00 0.00 0.00 2.39
30 31 1.659098 GTGTTGCACCTAGTCGTATGC 59.341 52.381 0.00 0.00 38.59 3.14
31 32 1.287425 GTTGCACCTAGTCGTATGCC 58.713 55.000 0.00 0.00 37.26 4.40
32 33 0.177141 TTGCACCTAGTCGTATGCCC 59.823 55.000 0.00 0.00 37.26 5.36
33 34 1.299926 GCACCTAGTCGTATGCCCG 60.300 63.158 0.00 0.00 31.71 6.13
34 35 1.362717 CACCTAGTCGTATGCCCGG 59.637 63.158 0.00 0.00 0.00 5.73
35 36 1.105167 CACCTAGTCGTATGCCCGGA 61.105 60.000 0.73 0.00 0.00 5.14
36 37 0.178970 ACCTAGTCGTATGCCCGGAT 60.179 55.000 0.73 0.00 0.00 4.18
37 38 0.243907 CCTAGTCGTATGCCCGGATG 59.756 60.000 0.73 0.00 0.00 3.51
38 39 0.243907 CTAGTCGTATGCCCGGATGG 59.756 60.000 0.73 0.00 37.09 3.51
39 40 0.468585 TAGTCGTATGCCCGGATGGT 60.469 55.000 0.73 0.00 36.04 3.55
40 41 1.300697 GTCGTATGCCCGGATGGTC 60.301 63.158 0.73 0.00 36.04 4.02
41 42 1.456892 TCGTATGCCCGGATGGTCT 60.457 57.895 0.73 0.00 36.04 3.85
42 43 1.300931 CGTATGCCCGGATGGTCTG 60.301 63.158 0.73 0.00 36.04 3.51
43 44 1.744320 CGTATGCCCGGATGGTCTGA 61.744 60.000 0.73 0.00 36.04 3.27
44 45 0.687354 GTATGCCCGGATGGTCTGAT 59.313 55.000 0.73 0.00 36.04 2.90
45 46 1.072331 GTATGCCCGGATGGTCTGATT 59.928 52.381 0.73 0.00 36.04 2.57
46 47 0.552848 ATGCCCGGATGGTCTGATTT 59.447 50.000 0.73 0.00 36.04 2.17
47 48 0.394216 TGCCCGGATGGTCTGATTTG 60.394 55.000 0.73 0.00 36.04 2.32
48 49 1.728490 GCCCGGATGGTCTGATTTGC 61.728 60.000 0.73 0.00 36.04 3.68
49 50 1.439353 CCCGGATGGTCTGATTTGCG 61.439 60.000 0.73 0.00 0.00 4.85
50 51 1.439353 CCGGATGGTCTGATTTGCGG 61.439 60.000 0.00 3.80 36.75 5.69
51 52 0.744414 CGGATGGTCTGATTTGCGGT 60.744 55.000 0.00 0.00 0.00 5.68
52 53 1.472552 CGGATGGTCTGATTTGCGGTA 60.473 52.381 0.00 0.00 0.00 4.02
53 54 2.806745 CGGATGGTCTGATTTGCGGTAT 60.807 50.000 0.00 0.00 0.00 2.73
54 55 2.808543 GGATGGTCTGATTTGCGGTATC 59.191 50.000 0.00 0.00 0.00 2.24
55 56 1.934589 TGGTCTGATTTGCGGTATCG 58.065 50.000 0.00 0.00 39.81 2.92
65 66 4.872476 CGGTATCGCGCAACAATC 57.128 55.556 8.75 0.00 0.00 2.67
66 67 1.084290 CGGTATCGCGCAACAATCG 60.084 57.895 8.75 0.00 0.00 3.34
67 68 1.275657 GGTATCGCGCAACAATCGG 59.724 57.895 8.75 0.00 0.00 4.18
68 69 1.426041 GGTATCGCGCAACAATCGGT 61.426 55.000 8.75 0.00 0.00 4.69
69 70 0.372334 GTATCGCGCAACAATCGGTT 59.628 50.000 8.75 0.00 41.47 4.44
81 82 4.561735 ACAATCGGTTGAAAAATGTCGT 57.438 36.364 16.93 0.00 38.71 4.34
82 83 4.286910 ACAATCGGTTGAAAAATGTCGTG 58.713 39.130 16.93 0.00 38.71 4.35
83 84 2.392933 TCGGTTGAAAAATGTCGTGC 57.607 45.000 0.00 0.00 0.00 5.34
84 85 1.041726 CGGTTGAAAAATGTCGTGCG 58.958 50.000 0.00 0.00 0.00 5.34
85 86 0.775861 GGTTGAAAAATGTCGTGCGC 59.224 50.000 0.00 0.00 0.00 6.09
86 87 1.471964 GTTGAAAAATGTCGTGCGCA 58.528 45.000 5.66 5.66 0.00 6.09
87 88 2.050691 GTTGAAAAATGTCGTGCGCAT 58.949 42.857 15.91 0.00 0.00 4.73
88 89 3.230355 GTTGAAAAATGTCGTGCGCATA 58.770 40.909 15.91 1.30 0.00 3.14
89 90 3.116063 TGAAAAATGTCGTGCGCATAG 57.884 42.857 15.91 11.86 0.00 2.23
355 356 6.905544 GTTATAAACAAGACTGCTACTCCC 57.094 41.667 0.00 0.00 0.00 4.30
356 357 6.641474 GTTATAAACAAGACTGCTACTCCCT 58.359 40.000 0.00 0.00 0.00 4.20
357 358 3.686916 AAACAAGACTGCTACTCCCTC 57.313 47.619 0.00 0.00 0.00 4.30
358 359 2.614134 ACAAGACTGCTACTCCCTCT 57.386 50.000 0.00 0.00 0.00 3.69
359 360 2.175202 ACAAGACTGCTACTCCCTCTG 58.825 52.381 0.00 0.00 0.00 3.35
360 361 2.175202 CAAGACTGCTACTCCCTCTGT 58.825 52.381 0.00 0.00 0.00 3.41
361 362 2.137810 AGACTGCTACTCCCTCTGTC 57.862 55.000 0.00 0.00 0.00 3.51
362 363 1.356059 AGACTGCTACTCCCTCTGTCA 59.644 52.381 0.00 0.00 33.10 3.58
363 364 1.474879 GACTGCTACTCCCTCTGTCAC 59.525 57.143 0.00 0.00 0.00 3.67
364 365 1.203063 ACTGCTACTCCCTCTGTCACA 60.203 52.381 0.00 0.00 0.00 3.58
365 366 1.476085 CTGCTACTCCCTCTGTCACAG 59.524 57.143 0.00 0.00 0.00 3.66
366 367 1.203063 TGCTACTCCCTCTGTCACAGT 60.203 52.381 4.28 0.00 32.61 3.55
367 368 1.896465 GCTACTCCCTCTGTCACAGTT 59.104 52.381 4.28 0.00 32.61 3.16
368 369 2.300437 GCTACTCCCTCTGTCACAGTTT 59.700 50.000 4.28 0.00 32.61 2.66
369 370 3.510360 GCTACTCCCTCTGTCACAGTTTA 59.490 47.826 4.28 0.00 32.61 2.01
370 371 4.381079 GCTACTCCCTCTGTCACAGTTTAG 60.381 50.000 4.28 1.54 32.61 1.85
371 372 3.845860 ACTCCCTCTGTCACAGTTTAGA 58.154 45.455 4.28 0.00 32.61 2.10
372 373 4.223953 ACTCCCTCTGTCACAGTTTAGAA 58.776 43.478 4.28 0.00 32.61 2.10
373 374 4.654262 ACTCCCTCTGTCACAGTTTAGAAA 59.346 41.667 4.28 0.00 32.61 2.52
374 375 5.215252 TCCCTCTGTCACAGTTTAGAAAG 57.785 43.478 4.28 0.00 32.61 2.62
375 376 3.748568 CCCTCTGTCACAGTTTAGAAAGC 59.251 47.826 4.28 0.00 32.61 3.51
376 377 3.430218 CCTCTGTCACAGTTTAGAAAGCG 59.570 47.826 4.28 0.00 32.61 4.68
377 378 2.800544 TCTGTCACAGTTTAGAAAGCGC 59.199 45.455 4.28 0.00 32.61 5.92
378 379 1.525197 TGTCACAGTTTAGAAAGCGCG 59.475 47.619 0.00 0.00 0.00 6.86
379 380 1.525619 GTCACAGTTTAGAAAGCGCGT 59.474 47.619 8.43 0.00 0.00 6.01
380 381 2.033151 GTCACAGTTTAGAAAGCGCGTT 60.033 45.455 8.72 8.72 0.00 4.84
381 382 2.610374 TCACAGTTTAGAAAGCGCGTTT 59.390 40.909 10.57 4.71 0.00 3.60
382 383 2.713976 CACAGTTTAGAAAGCGCGTTTG 59.286 45.455 9.53 5.84 0.00 2.93
383 384 2.610374 ACAGTTTAGAAAGCGCGTTTGA 59.390 40.909 9.53 0.00 0.00 2.69
384 385 3.064271 ACAGTTTAGAAAGCGCGTTTGAA 59.936 39.130 9.53 4.82 0.00 2.69
385 386 4.032355 CAGTTTAGAAAGCGCGTTTGAAA 58.968 39.130 9.53 10.61 0.00 2.69
386 387 4.497608 CAGTTTAGAAAGCGCGTTTGAAAA 59.502 37.500 9.53 7.53 0.00 2.29
387 388 5.173131 CAGTTTAGAAAGCGCGTTTGAAAAT 59.827 36.000 9.53 9.90 0.00 1.82
388 389 5.746721 AGTTTAGAAAGCGCGTTTGAAAATT 59.253 32.000 9.53 4.65 0.00 1.82
389 390 5.799542 TTAGAAAGCGCGTTTGAAAATTC 57.200 34.783 9.53 1.54 0.00 2.17
390 391 3.964909 AGAAAGCGCGTTTGAAAATTCT 58.035 36.364 9.53 4.14 0.00 2.40
391 392 3.975035 AGAAAGCGCGTTTGAAAATTCTC 59.025 39.130 9.53 0.00 0.00 2.87
392 393 3.626028 AAGCGCGTTTGAAAATTCTCT 57.374 38.095 7.61 0.00 0.00 3.10
393 394 2.921126 AGCGCGTTTGAAAATTCTCTG 58.079 42.857 8.43 0.00 0.00 3.35
394 395 1.383412 GCGCGTTTGAAAATTCTCTGC 59.617 47.619 8.43 0.00 0.00 4.26
395 396 1.638996 CGCGTTTGAAAATTCTCTGCG 59.361 47.619 0.00 7.71 36.96 5.18
396 397 2.661709 CGCGTTTGAAAATTCTCTGCGA 60.662 45.455 0.00 0.00 45.25 5.10
397 398 2.652172 GCGTTTGAAAATTCTCTGCGAC 59.348 45.455 0.00 0.00 0.00 5.19
398 399 3.226347 CGTTTGAAAATTCTCTGCGACC 58.774 45.455 0.00 0.00 0.00 4.79
399 400 3.058914 CGTTTGAAAATTCTCTGCGACCT 60.059 43.478 0.00 0.00 0.00 3.85
400 401 4.151689 CGTTTGAAAATTCTCTGCGACCTA 59.848 41.667 0.00 0.00 0.00 3.08
401 402 5.622378 GTTTGAAAATTCTCTGCGACCTAG 58.378 41.667 0.00 0.00 0.00 3.02
402 403 3.861840 TGAAAATTCTCTGCGACCTAGG 58.138 45.455 7.41 7.41 0.00 3.02
403 404 3.260884 TGAAAATTCTCTGCGACCTAGGT 59.739 43.478 16.26 16.26 0.00 3.08
404 405 2.969628 AATTCTCTGCGACCTAGGTG 57.030 50.000 22.10 12.88 0.00 4.00
405 406 1.115467 ATTCTCTGCGACCTAGGTGG 58.885 55.000 22.10 20.34 42.93 4.61
420 421 6.248569 CCTAGGTGGTTATCTATTGGTTGT 57.751 41.667 0.00 0.00 0.00 3.32
421 422 6.055588 CCTAGGTGGTTATCTATTGGTTGTG 58.944 44.000 0.00 0.00 0.00 3.33
422 423 4.855340 AGGTGGTTATCTATTGGTTGTGG 58.145 43.478 0.00 0.00 0.00 4.17
423 424 4.538490 AGGTGGTTATCTATTGGTTGTGGA 59.462 41.667 0.00 0.00 0.00 4.02
424 425 5.014755 AGGTGGTTATCTATTGGTTGTGGAA 59.985 40.000 0.00 0.00 0.00 3.53
425 426 5.891551 GGTGGTTATCTATTGGTTGTGGAAT 59.108 40.000 0.00 0.00 0.00 3.01
426 427 6.183360 GGTGGTTATCTATTGGTTGTGGAATG 60.183 42.308 0.00 0.00 0.00 2.67
427 428 5.890985 TGGTTATCTATTGGTTGTGGAATGG 59.109 40.000 0.00 0.00 0.00 3.16
428 429 5.301805 GGTTATCTATTGGTTGTGGAATGGG 59.698 44.000 0.00 0.00 0.00 4.00
429 430 2.733956 TCTATTGGTTGTGGAATGGGC 58.266 47.619 0.00 0.00 0.00 5.36
430 431 2.311542 TCTATTGGTTGTGGAATGGGCT 59.688 45.455 0.00 0.00 0.00 5.19
431 432 2.917713 ATTGGTTGTGGAATGGGCTA 57.082 45.000 0.00 0.00 0.00 3.93
432 433 2.685106 TTGGTTGTGGAATGGGCTAA 57.315 45.000 0.00 0.00 0.00 3.09
433 434 2.685106 TGGTTGTGGAATGGGCTAAA 57.315 45.000 0.00 0.00 0.00 1.85
434 435 2.964209 TGGTTGTGGAATGGGCTAAAA 58.036 42.857 0.00 0.00 0.00 1.52
435 436 3.309296 TGGTTGTGGAATGGGCTAAAAA 58.691 40.909 0.00 0.00 0.00 1.94
456 457 7.795431 AAAAATAACATTCACACTACGCATG 57.205 32.000 0.00 0.00 0.00 4.06
457 458 2.900122 AACATTCACACTACGCATGC 57.100 45.000 7.91 7.91 0.00 4.06
458 459 1.807139 ACATTCACACTACGCATGCA 58.193 45.000 19.57 0.00 0.00 3.96
459 460 2.358957 ACATTCACACTACGCATGCAT 58.641 42.857 19.57 4.54 0.00 3.96
460 461 3.530535 ACATTCACACTACGCATGCATA 58.469 40.909 19.57 5.77 0.00 3.14
461 462 4.129380 ACATTCACACTACGCATGCATAT 58.871 39.130 19.57 4.84 0.00 1.78
462 463 5.296748 ACATTCACACTACGCATGCATATA 58.703 37.500 19.57 5.83 0.00 0.86
463 464 5.406477 ACATTCACACTACGCATGCATATAG 59.594 40.000 19.57 17.15 0.00 1.31
464 465 4.846779 TCACACTACGCATGCATATAGA 57.153 40.909 19.57 3.38 0.00 1.98
465 466 5.195001 TCACACTACGCATGCATATAGAA 57.805 39.130 19.57 2.99 0.00 2.10
466 467 5.222631 TCACACTACGCATGCATATAGAAG 58.777 41.667 19.57 14.62 0.00 2.85
467 468 4.984785 CACACTACGCATGCATATAGAAGT 59.015 41.667 19.57 15.15 0.00 3.01
468 469 6.016610 TCACACTACGCATGCATATAGAAGTA 60.017 38.462 19.57 7.97 0.00 2.24
469 470 6.306596 CACACTACGCATGCATATAGAAGTAG 59.693 42.308 19.57 18.55 37.09 2.57
470 471 6.016192 ACACTACGCATGCATATAGAAGTAGT 60.016 38.462 19.57 19.16 42.63 2.73
471 472 7.174426 ACACTACGCATGCATATAGAAGTAGTA 59.826 37.037 22.08 10.47 40.74 1.82
472 473 7.482113 CACTACGCATGCATATAGAAGTAGTAC 59.518 40.741 22.08 0.00 40.74 2.73
473 474 6.576662 ACGCATGCATATAGAAGTAGTACT 57.423 37.500 19.57 0.00 0.00 2.73
474 475 7.683437 ACGCATGCATATAGAAGTAGTACTA 57.317 36.000 19.57 0.00 0.00 1.82
475 476 8.107399 ACGCATGCATATAGAAGTAGTACTAA 57.893 34.615 19.57 0.00 0.00 2.24
476 477 8.740906 ACGCATGCATATAGAAGTAGTACTAAT 58.259 33.333 19.57 0.00 0.00 1.73
477 478 9.574458 CGCATGCATATAGAAGTAGTACTAATT 57.426 33.333 19.57 15.05 0.00 1.40
502 503 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
503 504 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
504 505 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
505 506 2.825205 AGAAATAAATGCAATGCGCCC 58.175 42.857 4.18 0.00 41.33 6.13
506 507 2.431782 AGAAATAAATGCAATGCGCCCT 59.568 40.909 4.18 0.00 41.33 5.19
507 508 3.636300 AGAAATAAATGCAATGCGCCCTA 59.364 39.130 4.18 0.00 41.33 3.53
508 509 4.099266 AGAAATAAATGCAATGCGCCCTAA 59.901 37.500 4.18 0.00 41.33 2.69
509 510 4.399004 AATAAATGCAATGCGCCCTAAA 57.601 36.364 4.18 0.00 41.33 1.85
510 511 2.008752 AAATGCAATGCGCCCTAAAC 57.991 45.000 4.18 0.00 41.33 2.01
511 512 0.175531 AATGCAATGCGCCCTAAACC 59.824 50.000 4.18 0.00 41.33 3.27
512 513 0.684153 ATGCAATGCGCCCTAAACCT 60.684 50.000 4.18 0.00 41.33 3.50
513 514 0.897863 TGCAATGCGCCCTAAACCTT 60.898 50.000 4.18 0.00 41.33 3.50
514 515 0.458370 GCAATGCGCCCTAAACCTTG 60.458 55.000 4.18 0.00 32.94 3.61
515 516 0.887933 CAATGCGCCCTAAACCTTGT 59.112 50.000 4.18 0.00 0.00 3.16
516 517 1.135402 CAATGCGCCCTAAACCTTGTC 60.135 52.381 4.18 0.00 0.00 3.18
517 518 0.328258 ATGCGCCCTAAACCTTGTCT 59.672 50.000 4.18 0.00 0.00 3.41
518 519 0.978151 TGCGCCCTAAACCTTGTCTA 59.022 50.000 4.18 0.00 0.00 2.59
519 520 1.557832 TGCGCCCTAAACCTTGTCTAT 59.442 47.619 4.18 0.00 0.00 1.98
520 521 2.026636 TGCGCCCTAAACCTTGTCTATT 60.027 45.455 4.18 0.00 0.00 1.73
521 522 2.354821 GCGCCCTAAACCTTGTCTATTG 59.645 50.000 0.00 0.00 0.00 1.90
522 523 3.606687 CGCCCTAAACCTTGTCTATTGT 58.393 45.455 0.00 0.00 0.00 2.71
523 524 3.374058 CGCCCTAAACCTTGTCTATTGTG 59.626 47.826 0.00 0.00 0.00 3.33
524 525 4.585879 GCCCTAAACCTTGTCTATTGTGA 58.414 43.478 0.00 0.00 0.00 3.58
525 526 5.007682 GCCCTAAACCTTGTCTATTGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
526 527 5.475564 GCCCTAAACCTTGTCTATTGTGAAA 59.524 40.000 0.00 0.00 0.00 2.69
527 528 6.015772 GCCCTAAACCTTGTCTATTGTGAAAA 60.016 38.462 0.00 0.00 0.00 2.29
528 529 7.368059 CCCTAAACCTTGTCTATTGTGAAAAC 58.632 38.462 0.00 0.00 0.00 2.43
529 530 7.075741 CCTAAACCTTGTCTATTGTGAAAACG 58.924 38.462 0.00 0.00 0.00 3.60
530 531 4.483476 ACCTTGTCTATTGTGAAAACGC 57.517 40.909 0.00 0.00 0.00 4.84
531 532 3.880490 ACCTTGTCTATTGTGAAAACGCA 59.120 39.130 0.00 0.00 0.00 5.24
532 533 4.219033 CCTTGTCTATTGTGAAAACGCAC 58.781 43.478 0.00 0.00 39.22 5.34
533 534 3.513462 TGTCTATTGTGAAAACGCACG 57.487 42.857 0.00 0.00 41.63 5.34
534 535 2.230864 GTCTATTGTGAAAACGCACGC 58.769 47.619 0.00 0.00 41.63 5.34
535 536 1.867865 TCTATTGTGAAAACGCACGCA 59.132 42.857 0.00 0.00 41.63 5.24
536 537 2.288186 TCTATTGTGAAAACGCACGCAA 59.712 40.909 0.00 0.00 41.63 4.85
537 538 1.914634 ATTGTGAAAACGCACGCAAA 58.085 40.000 0.00 0.00 41.63 3.68
538 539 1.914634 TTGTGAAAACGCACGCAAAT 58.085 40.000 0.00 0.00 41.63 2.32
539 540 1.914634 TGTGAAAACGCACGCAAATT 58.085 40.000 0.00 0.00 41.63 1.82
540 541 2.263077 TGTGAAAACGCACGCAAATTT 58.737 38.095 0.00 0.00 41.63 1.82
541 542 3.435566 TGTGAAAACGCACGCAAATTTA 58.564 36.364 0.00 0.00 41.63 1.40
542 543 3.857665 TGTGAAAACGCACGCAAATTTAA 59.142 34.783 0.00 0.00 41.63 1.52
543 544 4.190424 GTGAAAACGCACGCAAATTTAAC 58.810 39.130 0.00 0.00 0.00 2.01
544 545 4.027214 GTGAAAACGCACGCAAATTTAACT 60.027 37.500 0.00 0.00 0.00 2.24
545 546 4.027295 TGAAAACGCACGCAAATTTAACTG 60.027 37.500 0.00 0.00 0.00 3.16
546 547 2.766970 ACGCACGCAAATTTAACTGT 57.233 40.000 0.00 0.00 0.00 3.55
547 548 2.380660 ACGCACGCAAATTTAACTGTG 58.619 42.857 0.00 0.00 0.00 3.66
548 549 2.223386 ACGCACGCAAATTTAACTGTGT 60.223 40.909 10.83 7.10 36.74 3.72
549 550 2.400408 CGCACGCAAATTTAACTGTGTC 59.600 45.455 10.83 5.25 34.12 3.67
550 551 3.628017 GCACGCAAATTTAACTGTGTCT 58.372 40.909 10.83 0.00 34.12 3.41
551 552 4.041723 GCACGCAAATTTAACTGTGTCTT 58.958 39.130 10.83 0.00 34.12 3.01
552 553 4.146443 GCACGCAAATTTAACTGTGTCTTC 59.854 41.667 10.83 0.00 34.12 2.87
553 554 5.510671 CACGCAAATTTAACTGTGTCTTCT 58.489 37.500 0.00 0.00 34.12 2.85
554 555 6.655062 CACGCAAATTTAACTGTGTCTTCTA 58.345 36.000 0.00 0.00 34.12 2.10
555 556 7.129622 CACGCAAATTTAACTGTGTCTTCTAA 58.870 34.615 0.00 0.00 34.12 2.10
556 557 7.642194 CACGCAAATTTAACTGTGTCTTCTAAA 59.358 33.333 0.00 0.00 34.12 1.85
557 558 7.642586 ACGCAAATTTAACTGTGTCTTCTAAAC 59.357 33.333 0.00 0.00 30.62 2.01
558 559 7.855904 CGCAAATTTAACTGTGTCTTCTAAACT 59.144 33.333 0.00 0.00 0.00 2.66
559 560 8.958043 GCAAATTTAACTGTGTCTTCTAAACTG 58.042 33.333 0.00 0.00 0.00 3.16
562 563 8.958119 ATTTAACTGTGTCTTCTAAACTGTGA 57.042 30.769 0.00 0.00 0.00 3.58
563 564 8.958119 TTTAACTGTGTCTTCTAAACTGTGAT 57.042 30.769 0.00 0.00 0.00 3.06
564 565 6.851222 AACTGTGTCTTCTAAACTGTGATG 57.149 37.500 0.00 0.00 0.00 3.07
565 566 5.300752 ACTGTGTCTTCTAAACTGTGATGG 58.699 41.667 0.00 0.00 0.00 3.51
566 567 5.070446 ACTGTGTCTTCTAAACTGTGATGGA 59.930 40.000 0.00 0.00 0.00 3.41
567 568 5.541845 TGTGTCTTCTAAACTGTGATGGAG 58.458 41.667 0.00 0.00 0.00 3.86
568 569 4.932200 GTGTCTTCTAAACTGTGATGGAGG 59.068 45.833 0.00 0.00 0.00 4.30
569 570 4.020218 TGTCTTCTAAACTGTGATGGAGGG 60.020 45.833 0.00 0.00 0.00 4.30
570 571 4.223032 GTCTTCTAAACTGTGATGGAGGGA 59.777 45.833 0.00 0.00 0.00 4.20
571 572 4.467795 TCTTCTAAACTGTGATGGAGGGAG 59.532 45.833 0.00 0.00 0.00 4.30
572 573 3.791320 TCTAAACTGTGATGGAGGGAGT 58.209 45.455 0.00 0.00 0.00 3.85
573 574 4.942944 TCTAAACTGTGATGGAGGGAGTA 58.057 43.478 0.00 0.00 0.00 2.59
581 582 6.042552 ACTGTGATGGAGGGAGTAGATATTTG 59.957 42.308 0.00 0.00 0.00 2.32
612 616 9.567776 TTTATCTGTTTGTTTGATCAACTAGGA 57.432 29.630 7.89 1.38 36.21 2.94
613 617 9.567776 TTATCTGTTTGTTTGATCAACTAGGAA 57.432 29.630 7.89 0.00 36.21 3.36
614 618 7.496529 TCTGTTTGTTTGATCAACTAGGAAG 57.503 36.000 7.89 3.08 36.21 3.46
615 619 6.486657 TCTGTTTGTTTGATCAACTAGGAAGG 59.513 38.462 7.89 0.00 36.21 3.46
616 620 5.009610 TGTTTGTTTGATCAACTAGGAAGGC 59.990 40.000 7.89 0.00 36.21 4.35
632 640 5.314529 AGGAAGGCTGTATCATCATCAATG 58.685 41.667 0.00 0.00 36.65 2.82
633 641 5.068636 GGAAGGCTGTATCATCATCAATGT 58.931 41.667 0.00 0.00 36.68 2.71
637 645 8.783833 AAGGCTGTATCATCATCAATGTATAC 57.216 34.615 0.00 0.00 36.68 1.47
797 809 4.459089 GCCTCCTGCACTCGGTCC 62.459 72.222 0.00 0.00 40.77 4.46
831 843 2.172483 ATCACCACCGTCCACTGCTC 62.172 60.000 0.00 0.00 0.00 4.26
906 918 6.103501 ACCCTCAGATCTATCCTACAACTAGT 59.896 42.308 0.00 0.00 0.00 2.57
907 919 7.295196 ACCCTCAGATCTATCCTACAACTAGTA 59.705 40.741 0.00 0.00 0.00 1.82
927 939 5.148502 AGTAGTAGATTCCTATGTGGTGGG 58.851 45.833 0.00 0.00 37.07 4.61
928 940 4.008916 AGTAGATTCCTATGTGGTGGGT 57.991 45.455 0.00 0.00 37.07 4.51
929 941 5.152306 AGTAGATTCCTATGTGGTGGGTA 57.848 43.478 0.00 0.00 37.07 3.69
930 942 4.900054 AGTAGATTCCTATGTGGTGGGTAC 59.100 45.833 0.00 0.00 37.07 3.34
932 944 1.587066 TTCCTATGTGGTGGGTACCC 58.413 55.000 25.27 25.27 46.96 3.69
933 945 0.326808 TCCTATGTGGTGGGTACCCC 60.327 60.000 28.61 18.57 46.96 4.95
1150 1168 1.528292 CCCGAAATCCGCACCCAAAA 61.528 55.000 0.00 0.00 36.84 2.44
1157 1175 0.322997 TCCGCACCCAAAATCCGAAT 60.323 50.000 0.00 0.00 0.00 3.34
1160 1178 1.472480 CGCACCCAAAATCCGAATTCT 59.528 47.619 3.52 0.00 0.00 2.40
1163 1181 3.489229 GCACCCAAAATCCGAATTCTAGC 60.489 47.826 3.52 0.00 0.00 3.42
1211 1229 3.564027 CCCGATTGTTCGCCTCGC 61.564 66.667 0.00 0.00 44.12 5.03
1239 1258 7.115805 CGCGCCTGTAAGTAATAAGAATCATTA 59.884 37.037 0.00 0.00 0.00 1.90
1251 1270 8.480643 AATAAGAATCATTATCGATCGAACCC 57.519 34.615 23.50 5.80 0.00 4.11
1252 1271 5.730296 AGAATCATTATCGATCGAACCCT 57.270 39.130 23.50 8.13 0.00 4.34
1254 1273 6.525629 AGAATCATTATCGATCGAACCCTTT 58.474 36.000 23.50 11.55 0.00 3.11
1255 1274 6.647067 AGAATCATTATCGATCGAACCCTTTC 59.353 38.462 23.50 18.67 0.00 2.62
1256 1275 4.628074 TCATTATCGATCGAACCCTTTCC 58.372 43.478 23.50 0.00 0.00 3.13
1289 1316 4.764336 CGGCGTTCGAGCGTGGTA 62.764 66.667 22.62 0.00 42.43 3.25
1325 1352 3.706698 GTCTTGTTGGCTGAGTTTTTCC 58.293 45.455 0.00 0.00 0.00 3.13
1377 1405 2.560119 CCTCGCTGGGGAGATCGAG 61.560 68.421 14.81 3.79 45.50 4.04
1446 1480 5.009210 GGCCATGTGAGTACAAAAGTGTTTA 59.991 40.000 0.00 0.00 40.84 2.01
1447 1481 6.294508 GGCCATGTGAGTACAAAAGTGTTTAT 60.295 38.462 0.00 0.00 40.84 1.40
1448 1482 7.145323 GCCATGTGAGTACAAAAGTGTTTATT 58.855 34.615 0.00 0.00 40.84 1.40
1449 1483 7.651704 GCCATGTGAGTACAAAAGTGTTTATTT 59.348 33.333 0.00 0.00 40.84 1.40
1499 1535 6.536447 TGGTTAGGGTGTTTACTTCCTTTAG 58.464 40.000 0.00 0.00 0.00 1.85
1500 1536 6.329723 TGGTTAGGGTGTTTACTTCCTTTAGA 59.670 38.462 0.00 0.00 0.00 2.10
1501 1537 7.147337 TGGTTAGGGTGTTTACTTCCTTTAGAA 60.147 37.037 0.00 0.00 0.00 2.10
1502 1538 7.173907 GGTTAGGGTGTTTACTTCCTTTAGAAC 59.826 40.741 0.00 0.00 0.00 3.01
1503 1539 6.511017 AGGGTGTTTACTTCCTTTAGAACT 57.489 37.500 0.00 0.00 0.00 3.01
1504 1540 6.907961 AGGGTGTTTACTTCCTTTAGAACTT 58.092 36.000 0.00 0.00 0.00 2.66
1505 1541 6.771267 AGGGTGTTTACTTCCTTTAGAACTTG 59.229 38.462 0.00 0.00 0.00 3.16
1506 1542 6.016527 GGGTGTTTACTTCCTTTAGAACTTGG 60.017 42.308 0.00 0.00 0.00 3.61
1507 1543 6.769341 GGTGTTTACTTCCTTTAGAACTTGGA 59.231 38.462 0.00 0.00 0.00 3.53
1545 1581 1.217942 AGGGCTCAAAGTTTCTGGGTT 59.782 47.619 0.00 0.00 0.00 4.11
1562 1598 1.355005 GTTCTCTCGCTCTTTCCTGC 58.645 55.000 0.00 0.00 0.00 4.85
1572 1608 3.436704 CGCTCTTTCCTGCATGAACTTAA 59.563 43.478 3.69 0.00 0.00 1.85
1573 1609 4.436584 CGCTCTTTCCTGCATGAACTTAAG 60.437 45.833 3.69 0.00 0.00 1.85
1577 1613 6.970484 TCTTTCCTGCATGAACTTAAGTTTC 58.030 36.000 21.40 14.53 38.56 2.78
1637 1679 7.015226 TCGTATTTTGATTATTGTGCTCCTG 57.985 36.000 0.00 0.00 0.00 3.86
1657 1699 7.335422 GCTCCTGGAATAGTTATATGGATTGTG 59.665 40.741 0.00 0.00 0.00 3.33
1681 1723 1.635817 TTGGGGCTACCTGGAGCATC 61.636 60.000 16.37 9.98 44.76 3.91
1782 1828 4.333926 AGTCTGCTCTGTTTTCAGTTGTTC 59.666 41.667 0.00 0.00 46.98 3.18
1800 1846 6.942576 AGTTGTTCTTACTTGGCATCACTAAT 59.057 34.615 0.00 0.00 0.00 1.73
1840 1891 4.858850 TGCTCTTACAATGGGAATGACAT 58.141 39.130 0.00 0.00 0.00 3.06
1991 2045 6.956299 AAATGCAGAGAATTAACATGTTGC 57.044 33.333 21.42 13.98 0.00 4.17
2282 2339 8.410141 CACTATTATCTAGCTAGCCCACTAATC 58.590 40.741 16.35 0.00 0.00 1.75
2603 2662 1.700523 GCATTTCGACAATGCTTGCA 58.299 45.000 25.09 0.00 46.92 4.08
2691 2750 6.627087 TGATTTCAGGGTCTTAATCTGACT 57.373 37.500 0.00 0.00 37.28 3.41
2697 2756 5.363868 TCAGGGTCTTAATCTGACTGTATGG 59.636 44.000 0.00 0.00 33.21 2.74
2699 2758 5.129485 AGGGTCTTAATCTGACTGTATGGTG 59.871 44.000 0.00 0.00 35.04 4.17
2710 2769 7.548097 TCTGACTGTATGGTGTAGATTTCTTC 58.452 38.462 0.00 0.00 0.00 2.87
2777 2836 1.901833 TGTGTGCTCAAGAGGCTATCA 59.098 47.619 0.00 0.00 0.00 2.15
2778 2837 2.502947 TGTGTGCTCAAGAGGCTATCAT 59.497 45.455 0.00 0.00 0.00 2.45
2779 2838 3.054875 TGTGTGCTCAAGAGGCTATCATT 60.055 43.478 0.00 0.00 0.00 2.57
3042 3103 6.092807 GCTTAAGAGTAACTTCAGGATGTTGG 59.907 42.308 6.67 0.00 39.72 3.77
3143 3210 4.658901 GGGTGGATAAAGATGGAAGACCTA 59.341 45.833 0.00 0.00 37.04 3.08
3274 3341 4.847198 TGAGATTTCCAGCTTGCTCAATA 58.153 39.130 0.00 0.00 30.26 1.90
3354 3421 3.058293 TGGCTCTTTACGAAACATTGCTG 60.058 43.478 0.00 0.00 0.00 4.41
3424 3492 7.660208 TGACTACTTTTCTGTAATTCAAGGGAC 59.340 37.037 0.00 0.00 0.00 4.46
3526 3594 1.371467 TCCTGTGATGGATGTTGGGT 58.629 50.000 0.00 0.00 0.00 4.51
3595 3666 4.935205 TGTCATGCGGGCTTATCATTATAC 59.065 41.667 0.00 0.00 0.00 1.47
3626 3697 4.081309 GGCCCAACAGTACAGTATCTAACA 60.081 45.833 0.00 0.00 0.00 2.41
3923 3994 5.300969 TCTTTAATCTTGTCTGTGCATGC 57.699 39.130 11.82 11.82 0.00 4.06
3931 4002 2.358957 TGTCTGTGCATGCCTATGTTC 58.641 47.619 16.68 0.53 36.65 3.18
4093 4164 1.194781 GGTTGTGAGCTCCTCCTCCA 61.195 60.000 12.15 0.00 0.00 3.86
4094 4165 0.248843 GTTGTGAGCTCCTCCTCCAG 59.751 60.000 12.15 0.00 0.00 3.86
4151 4225 2.414161 GGGCGTCTTGTGTTTGCTAATC 60.414 50.000 0.00 0.00 0.00 1.75
4168 4243 7.312657 TGCTAATCTGACACATCTTCATTTC 57.687 36.000 0.00 0.00 0.00 2.17
4281 4356 2.486203 CACAGCGCCCAAATGTAAGTTA 59.514 45.455 2.29 0.00 0.00 2.24
4468 4549 2.127651 ACCCTTCTTTGACCCCTGTA 57.872 50.000 0.00 0.00 0.00 2.74
4593 4674 8.902540 AATATAGCGAATGATGTAAACAGGAA 57.097 30.769 0.00 0.00 0.00 3.36
4597 4685 5.473504 AGCGAATGATGTAAACAGGAAAAGT 59.526 36.000 0.00 0.00 0.00 2.66
4729 4817 9.337396 TCTCAAAAGAAGCAAAGTCTAATTACA 57.663 29.630 0.00 0.00 0.00 2.41
4730 4818 9.604626 CTCAAAAGAAGCAAAGTCTAATTACAG 57.395 33.333 0.00 0.00 0.00 2.74
4731 4819 9.120538 TCAAAAGAAGCAAAGTCTAATTACAGT 57.879 29.630 0.00 0.00 0.00 3.55
4732 4820 9.173939 CAAAAGAAGCAAAGTCTAATTACAGTG 57.826 33.333 0.00 0.00 0.00 3.66
4733 4821 8.677148 AAAGAAGCAAAGTCTAATTACAGTGA 57.323 30.769 0.00 0.00 0.00 3.41
4734 4822 8.677148 AAGAAGCAAAGTCTAATTACAGTGAA 57.323 30.769 0.00 0.00 0.00 3.18
4735 4823 8.316640 AGAAGCAAAGTCTAATTACAGTGAAG 57.683 34.615 0.00 0.00 0.00 3.02
4736 4824 8.150945 AGAAGCAAAGTCTAATTACAGTGAAGA 58.849 33.333 0.00 0.00 0.00 2.87
4737 4825 8.677148 AAGCAAAGTCTAATTACAGTGAAGAA 57.323 30.769 0.00 0.00 0.00 2.52
4738 4826 8.316640 AGCAAAGTCTAATTACAGTGAAGAAG 57.683 34.615 0.00 0.00 0.00 2.85
4739 4827 7.934120 AGCAAAGTCTAATTACAGTGAAGAAGT 59.066 33.333 0.00 0.00 0.00 3.01
4740 4828 9.204570 GCAAAGTCTAATTACAGTGAAGAAGTA 57.795 33.333 0.00 0.00 0.00 2.24
4753 4841 9.457436 ACAGTGAAGAAGTAAAAGTAAGGAAAA 57.543 29.630 0.00 0.00 0.00 2.29
4990 5114 5.127682 CAGCCCTAAAAATGTAAGCATTCCT 59.872 40.000 0.00 0.00 43.89 3.36
4991 5115 6.321181 CAGCCCTAAAAATGTAAGCATTCCTA 59.679 38.462 0.00 0.00 43.89 2.94
5029 5153 5.302823 GGCCCAAGCAACTAGAATGATTATT 59.697 40.000 0.00 0.00 42.56 1.40
5064 5188 2.852449 CAGATTCAGCAGATGCCTGAT 58.148 47.619 0.14 0.00 43.02 2.90
5136 5260 6.268566 GGCATATGTTCTTCCAACAGATTTC 58.731 40.000 4.29 0.00 30.54 2.17
5239 5366 8.404180 TGAATGAAGTTCTTCCTCTGTAGGAGT 61.404 40.741 4.17 0.00 42.55 3.85
5249 5376 4.167554 CTCTGTAGGAGTGTGTTCAGTC 57.832 50.000 0.00 0.00 41.73 3.51
5251 5378 4.981812 TCTGTAGGAGTGTGTTCAGTCTA 58.018 43.478 3.62 0.00 42.03 2.59
5279 5411 9.512435 CATTCAGAAGTAGCCAGAAAAATATTG 57.488 33.333 0.00 0.00 0.00 1.90
5280 5412 7.630242 TCAGAAGTAGCCAGAAAAATATTGG 57.370 36.000 0.00 0.00 35.06 3.16
5303 5435 4.378874 GGTGCTTGAGCTGATTACAAGTTC 60.379 45.833 12.23 6.91 41.73 3.01
5318 5450 0.111253 AGTTCTCCAAAGCCAGGTGG 59.889 55.000 0.00 0.00 36.13 4.61
5386 5522 5.508567 TGATCCTGAATTGCTGGACATTTA 58.491 37.500 0.00 0.00 45.92 1.40
5541 5743 6.939163 ACTGAAACTGATCAAATGCTTCTACT 59.061 34.615 0.00 0.00 0.00 2.57
5542 5744 8.097038 ACTGAAACTGATCAAATGCTTCTACTA 58.903 33.333 0.00 0.00 0.00 1.82
5543 5745 8.484641 TGAAACTGATCAAATGCTTCTACTAG 57.515 34.615 0.00 0.00 0.00 2.57
5544 5746 6.917217 AACTGATCAAATGCTTCTACTAGC 57.083 37.500 0.00 0.00 41.59 3.42
5554 5756 4.972514 GCTTCTACTAGCAAAGGCAAAT 57.027 40.909 0.00 0.00 44.61 2.32
5555 5757 4.666237 GCTTCTACTAGCAAAGGCAAATG 58.334 43.478 0.00 0.00 44.61 2.32
5556 5758 4.439289 GCTTCTACTAGCAAAGGCAAATGG 60.439 45.833 0.00 0.00 44.61 3.16
5557 5759 4.568072 TCTACTAGCAAAGGCAAATGGA 57.432 40.909 0.00 0.00 44.61 3.41
5558 5760 4.917385 TCTACTAGCAAAGGCAAATGGAA 58.083 39.130 0.00 0.00 44.61 3.53
5559 5761 5.509498 TCTACTAGCAAAGGCAAATGGAAT 58.491 37.500 0.00 0.00 44.61 3.01
5560 5762 5.951747 TCTACTAGCAAAGGCAAATGGAATT 59.048 36.000 0.00 0.00 44.61 2.17
5561 5763 7.116075 TCTACTAGCAAAGGCAAATGGAATTA 58.884 34.615 0.00 0.00 44.61 1.40
5562 5764 6.796785 ACTAGCAAAGGCAAATGGAATTAT 57.203 33.333 0.00 0.00 44.61 1.28
5563 5765 7.186570 ACTAGCAAAGGCAAATGGAATTATT 57.813 32.000 0.00 0.00 44.61 1.40
5564 5766 7.267857 ACTAGCAAAGGCAAATGGAATTATTC 58.732 34.615 0.00 0.00 44.61 1.75
5565 5767 6.303903 AGCAAAGGCAAATGGAATTATTCT 57.696 33.333 4.87 0.00 44.61 2.40
5566 5768 6.714278 AGCAAAGGCAAATGGAATTATTCTT 58.286 32.000 4.87 0.00 44.61 2.52
5567 5769 7.170277 AGCAAAGGCAAATGGAATTATTCTTT 58.830 30.769 4.87 0.00 44.61 2.52
5568 5770 7.666804 AGCAAAGGCAAATGGAATTATTCTTTT 59.333 29.630 4.87 3.37 44.61 2.27
5569 5771 8.945057 GCAAAGGCAAATGGAATTATTCTTTTA 58.055 29.630 4.87 0.00 33.67 1.52
5573 5775 9.435688 AGGCAAATGGAATTATTCTTTTAACAC 57.564 29.630 4.87 0.00 33.67 3.32
5574 5776 9.435688 GGCAAATGGAATTATTCTTTTAACACT 57.564 29.630 4.87 0.00 33.67 3.55
5594 5796 8.807667 AACACTCATTTGAACTGAAATTGATC 57.192 30.769 0.00 0.00 0.00 2.92
5595 5797 7.944061 ACACTCATTTGAACTGAAATTGATCA 58.056 30.769 0.00 0.00 0.00 2.92
5596 5798 8.415553 ACACTCATTTGAACTGAAATTGATCAA 58.584 29.630 11.26 11.26 0.00 2.57
5597 5799 9.251792 CACTCATTTGAACTGAAATTGATCAAA 57.748 29.630 13.09 0.00 42.26 2.69
5598 5800 9.991906 ACTCATTTGAACTGAAATTGATCAAAT 57.008 25.926 13.09 0.02 46.20 2.32
5601 5803 8.842358 ATTTGAACTGAAATTGATCAAATGCT 57.158 26.923 13.09 0.00 44.58 3.79
5602 5804 8.665643 TTTGAACTGAAATTGATCAAATGCTT 57.334 26.923 13.09 3.84 35.67 3.91
5603 5805 7.878477 TGAACTGAAATTGATCAAATGCTTC 57.122 32.000 13.09 12.70 0.00 3.86
5604 5806 7.663827 TGAACTGAAATTGATCAAATGCTTCT 58.336 30.769 13.09 0.00 0.00 2.85
5605 5807 8.795513 TGAACTGAAATTGATCAAATGCTTCTA 58.204 29.630 13.09 4.36 0.00 2.10
5606 5808 9.798994 GAACTGAAATTGATCAAATGCTTCTAT 57.201 29.630 13.09 3.77 0.00 1.98
5847 6051 1.079612 CATCCACGTCTGCTGCTCA 60.080 57.895 0.00 0.00 0.00 4.26
5854 6058 3.640407 TCTGCTGCTCACCCCACC 61.640 66.667 0.00 0.00 0.00 4.61
5863 6067 1.826385 CTCACCCCACCATTGAAGAC 58.174 55.000 0.00 0.00 0.00 3.01
5938 6142 3.252554 AGTCCAGTGTCTTCTTCCTCT 57.747 47.619 0.00 0.00 0.00 3.69
6015 6219 8.762481 AGTTGTCCAAAATAACTAGACCTTTT 57.238 30.769 0.00 0.00 37.53 2.27
6273 6499 5.649395 GTGTAACCCTGAAAATAACCCTACC 59.351 44.000 0.00 0.00 0.00 3.18
6365 6594 7.013083 CCAGGTTCATTATCCTTGAGAAATCTG 59.987 40.741 0.00 0.00 30.91 2.90
6378 6607 2.083774 GAAATCTGCCGACCACATTCA 58.916 47.619 0.00 0.00 0.00 2.57
6587 6816 1.115467 CGGCCTACACAGAGAAGGAT 58.885 55.000 0.00 0.00 31.64 3.24
6680 6909 2.481969 CGAGATGCCATTCGAGAAGGAA 60.482 50.000 0.00 0.00 39.06 3.36
6751 6980 7.599245 CGACTTGATTTCTACAAAGAAGGTAGT 59.401 37.037 0.00 0.00 42.60 2.73
6866 7098 8.059798 AGGTTATGATGAATTGTTTCTTCTGG 57.940 34.615 0.00 0.00 37.09 3.86
7010 7242 4.023980 CCAGACACCTGAAGATGGTACTA 58.976 47.826 0.00 0.00 43.02 1.82
7070 7302 1.804746 CGTGCCCTTCGTGCATATACA 60.805 52.381 0.00 0.00 41.46 2.29
7108 7340 6.491403 AGAAATTCTGCTTTTGAGGAGCTTAA 59.509 34.615 0.00 0.00 40.75 1.85
7118 7352 2.490509 TGAGGAGCTTAAACGACGATGA 59.509 45.455 0.00 0.00 0.00 2.92
7123 7357 1.935933 CTTAAACGACGATGAGGGGG 58.064 55.000 0.00 0.00 0.00 5.40
7124 7358 1.479323 CTTAAACGACGATGAGGGGGA 59.521 52.381 0.00 0.00 0.00 4.81
7127 7361 3.227276 CGACGATGAGGGGGAGGG 61.227 72.222 0.00 0.00 0.00 4.30
7128 7362 2.282446 GACGATGAGGGGGAGGGA 59.718 66.667 0.00 0.00 0.00 4.20
7130 7364 2.299727 GACGATGAGGGGGAGGGAGA 62.300 65.000 0.00 0.00 0.00 3.71
7171 7405 4.393680 TGTTGGTGCGTAAATACTGGAATC 59.606 41.667 0.00 0.00 0.00 2.52
7312 7551 1.202639 TGTATATTGGGCTGCGGACTG 60.203 52.381 0.00 0.00 0.00 3.51
7449 7692 9.138596 TGTAGCATGGTCAGTTTGTATAGTATA 57.861 33.333 0.00 0.00 0.00 1.47
7486 7729 2.027192 ACCGATTGTGACCTTGTGCTAT 60.027 45.455 0.00 0.00 0.00 2.97
7488 7731 3.002791 CGATTGTGACCTTGTGCTATGT 58.997 45.455 0.00 0.00 0.00 2.29
7534 7779 5.883673 TCCCATCTTTTTAATTCGACCGATT 59.116 36.000 0.00 0.00 0.00 3.34
7556 7801 7.493320 CGATTCATGGTGATGGAAATTTGAATT 59.507 33.333 0.00 0.00 33.89 2.17
7570 7815 1.084018 TGAATTCCAAGGGAGGGCTT 58.916 50.000 2.27 0.00 31.21 4.35
7592 7838 2.636778 TTCCTGAAGCACGCGTGACA 62.637 55.000 41.19 31.01 0.00 3.58
7646 7892 4.100279 AGGTGGAAAGTCGAAAAGGATT 57.900 40.909 0.00 0.00 0.00 3.01
7649 7895 4.519350 GGTGGAAAGTCGAAAAGGATTCTT 59.481 41.667 0.00 0.00 34.07 2.52
7652 7898 5.470098 TGGAAAGTCGAAAAGGATTCTTCTG 59.530 40.000 0.00 0.00 31.82 3.02
7672 7930 5.827756 TCTGAGAGTATCCTTGTCTTGGTA 58.172 41.667 0.00 0.00 33.66 3.25
7685 7943 8.581578 TCCTTGTCTTGGTATTTAATGGTTTTC 58.418 33.333 0.00 0.00 0.00 2.29
7721 8013 4.823442 ACTGCTGTTCAATGTTGAGATGAA 59.177 37.500 0.00 0.00 38.61 2.57
7746 8038 5.705609 CCATGCGGCCTTATTAACTTTAT 57.294 39.130 0.00 0.00 0.00 1.40
7751 8043 5.472137 TGCGGCCTTATTAACTTTATGGATC 59.528 40.000 0.00 0.00 0.00 3.36
7790 8082 5.350365 GCGATTACACTGTTACCAAGAATGA 59.650 40.000 0.00 0.00 0.00 2.57
7848 8140 3.068560 CACTTTTGGATGGTTGCCAATG 58.931 45.455 0.00 0.00 44.30 2.82
7860 8152 3.312828 GTTGCCAATGTTTTGATACGCA 58.687 40.909 0.00 0.00 34.60 5.24
7885 8177 9.071276 CATATGTTCCATAGCCAATTCTAGTTT 57.929 33.333 0.00 0.00 0.00 2.66
8093 8385 2.285154 CGCGAGGATTACACCGTTC 58.715 57.895 0.00 0.00 34.73 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.690719 TAGGTGCAACACGGCCCG 62.691 66.667 3.64 0.00 39.98 6.13
5 6 2.746277 CTAGGTGCAACACGGCCC 60.746 66.667 3.64 0.00 39.98 5.80
6 7 2.032071 ACTAGGTGCAACACGGCC 59.968 61.111 3.64 0.00 39.98 6.13
7 8 2.380410 CGACTAGGTGCAACACGGC 61.380 63.158 3.64 0.00 39.98 5.68
8 9 0.241749 TACGACTAGGTGCAACACGG 59.758 55.000 3.64 0.00 39.98 4.94
9 10 1.917955 CATACGACTAGGTGCAACACG 59.082 52.381 3.64 6.82 39.98 4.49
10 11 1.659098 GCATACGACTAGGTGCAACAC 59.341 52.381 3.64 0.00 39.98 3.32
11 12 1.404986 GGCATACGACTAGGTGCAACA 60.405 52.381 3.64 0.00 39.98 3.33
12 13 1.287425 GGCATACGACTAGGTGCAAC 58.713 55.000 0.00 0.00 37.33 4.17
13 14 0.177141 GGGCATACGACTAGGTGCAA 59.823 55.000 0.00 0.00 37.33 4.08
14 15 1.820581 GGGCATACGACTAGGTGCA 59.179 57.895 0.00 0.00 37.33 4.57
15 16 1.299926 CGGGCATACGACTAGGTGC 60.300 63.158 0.00 0.00 35.66 5.01
16 17 1.105167 TCCGGGCATACGACTAGGTG 61.105 60.000 0.00 0.00 35.47 4.00
17 18 0.178970 ATCCGGGCATACGACTAGGT 60.179 55.000 0.00 0.00 35.47 3.08
18 19 0.243907 CATCCGGGCATACGACTAGG 59.756 60.000 0.00 0.00 35.47 3.02
19 20 0.243907 CCATCCGGGCATACGACTAG 59.756 60.000 0.00 0.00 35.47 2.57
20 21 0.468585 ACCATCCGGGCATACGACTA 60.469 55.000 0.00 0.00 42.05 2.59
21 22 1.745320 GACCATCCGGGCATACGACT 61.745 60.000 0.00 0.00 41.77 4.18
22 23 1.300697 GACCATCCGGGCATACGAC 60.301 63.158 0.00 0.00 41.77 4.34
23 24 1.456892 AGACCATCCGGGCATACGA 60.457 57.895 0.00 0.00 46.60 3.43
24 25 1.300931 CAGACCATCCGGGCATACG 60.301 63.158 0.00 0.00 46.60 3.06
25 26 0.687354 ATCAGACCATCCGGGCATAC 59.313 55.000 0.00 0.00 46.60 2.39
26 27 1.434188 AATCAGACCATCCGGGCATA 58.566 50.000 0.00 0.00 46.60 3.14
27 28 0.552848 AAATCAGACCATCCGGGCAT 59.447 50.000 0.00 0.00 46.60 4.40
28 29 0.394216 CAAATCAGACCATCCGGGCA 60.394 55.000 0.00 0.00 46.60 5.36
29 30 1.728490 GCAAATCAGACCATCCGGGC 61.728 60.000 0.00 0.00 43.02 6.13
30 31 1.439353 CGCAAATCAGACCATCCGGG 61.439 60.000 0.00 0.00 44.81 5.73
31 32 1.439353 CCGCAAATCAGACCATCCGG 61.439 60.000 0.00 0.00 38.77 5.14
32 33 0.744414 ACCGCAAATCAGACCATCCG 60.744 55.000 0.00 0.00 0.00 4.18
33 34 2.325583 TACCGCAAATCAGACCATCC 57.674 50.000 0.00 0.00 0.00 3.51
34 35 2.476619 CGATACCGCAAATCAGACCATC 59.523 50.000 0.00 0.00 0.00 3.51
35 36 2.483876 CGATACCGCAAATCAGACCAT 58.516 47.619 0.00 0.00 0.00 3.55
36 37 1.934589 CGATACCGCAAATCAGACCA 58.065 50.000 0.00 0.00 0.00 4.02
48 49 1.084290 CGATTGTTGCGCGATACCG 60.084 57.895 12.10 0.47 39.16 4.02
49 50 1.275657 CCGATTGTTGCGCGATACC 59.724 57.895 12.10 0.00 0.00 2.73
50 51 0.372334 AACCGATTGTTGCGCGATAC 59.628 50.000 12.10 7.26 35.31 2.24
51 52 2.757212 AACCGATTGTTGCGCGATA 58.243 47.368 12.10 0.00 35.31 2.92
52 53 3.573558 AACCGATTGTTGCGCGAT 58.426 50.000 12.10 0.00 35.31 4.58
59 60 4.737765 CACGACATTTTTCAACCGATTGTT 59.262 37.500 0.00 0.00 37.11 2.83
60 61 4.286910 CACGACATTTTTCAACCGATTGT 58.713 39.130 0.00 0.00 37.11 2.71
61 62 3.119463 GCACGACATTTTTCAACCGATTG 59.881 43.478 0.00 0.00 37.14 2.67
62 63 3.305110 GCACGACATTTTTCAACCGATT 58.695 40.909 0.00 0.00 0.00 3.34
63 64 2.664424 CGCACGACATTTTTCAACCGAT 60.664 45.455 0.00 0.00 0.00 4.18
64 65 1.333347 CGCACGACATTTTTCAACCGA 60.333 47.619 0.00 0.00 0.00 4.69
65 66 1.041726 CGCACGACATTTTTCAACCG 58.958 50.000 0.00 0.00 0.00 4.44
66 67 0.775861 GCGCACGACATTTTTCAACC 59.224 50.000 0.30 0.00 0.00 3.77
67 68 1.471964 TGCGCACGACATTTTTCAAC 58.528 45.000 5.66 0.00 0.00 3.18
68 69 2.414058 ATGCGCACGACATTTTTCAA 57.586 40.000 14.90 0.00 0.00 2.69
69 70 3.116063 CTATGCGCACGACATTTTTCA 57.884 42.857 14.90 0.00 0.00 2.69
332 333 6.641474 AGGGAGTAGCAGTCTTGTTTATAAC 58.359 40.000 0.00 0.00 0.00 1.89
333 334 6.668283 AGAGGGAGTAGCAGTCTTGTTTATAA 59.332 38.462 0.00 0.00 0.00 0.98
334 335 6.096987 CAGAGGGAGTAGCAGTCTTGTTTATA 59.903 42.308 0.00 0.00 0.00 0.98
335 336 5.026790 AGAGGGAGTAGCAGTCTTGTTTAT 58.973 41.667 0.00 0.00 0.00 1.40
336 337 4.220821 CAGAGGGAGTAGCAGTCTTGTTTA 59.779 45.833 0.00 0.00 0.00 2.01
337 338 3.007398 CAGAGGGAGTAGCAGTCTTGTTT 59.993 47.826 0.00 0.00 0.00 2.83
338 339 2.564947 CAGAGGGAGTAGCAGTCTTGTT 59.435 50.000 0.00 0.00 0.00 2.83
339 340 2.175202 CAGAGGGAGTAGCAGTCTTGT 58.825 52.381 0.00 0.00 0.00 3.16
340 341 2.165437 GACAGAGGGAGTAGCAGTCTTG 59.835 54.545 0.00 0.00 0.00 3.02
341 342 2.225142 TGACAGAGGGAGTAGCAGTCTT 60.225 50.000 0.00 0.00 0.00 3.01
342 343 1.356059 TGACAGAGGGAGTAGCAGTCT 59.644 52.381 0.00 0.00 0.00 3.24
343 344 1.474879 GTGACAGAGGGAGTAGCAGTC 59.525 57.143 0.00 0.00 0.00 3.51
344 345 1.203063 TGTGACAGAGGGAGTAGCAGT 60.203 52.381 0.00 0.00 0.00 4.40
345 346 1.476085 CTGTGACAGAGGGAGTAGCAG 59.524 57.143 6.79 0.00 32.44 4.24
346 347 1.203063 ACTGTGACAGAGGGAGTAGCA 60.203 52.381 20.97 0.00 35.18 3.49
347 348 1.551452 ACTGTGACAGAGGGAGTAGC 58.449 55.000 20.97 0.00 35.18 3.58
348 349 5.010933 TCTAAACTGTGACAGAGGGAGTAG 58.989 45.833 20.97 10.22 35.18 2.57
349 350 4.994282 TCTAAACTGTGACAGAGGGAGTA 58.006 43.478 20.97 1.25 35.18 2.59
350 351 3.845860 TCTAAACTGTGACAGAGGGAGT 58.154 45.455 20.97 0.00 35.18 3.85
351 352 4.873746 TTCTAAACTGTGACAGAGGGAG 57.126 45.455 20.97 10.38 35.18 4.30
352 353 4.503296 GCTTTCTAAACTGTGACAGAGGGA 60.503 45.833 20.97 8.65 35.18 4.20
353 354 3.748568 GCTTTCTAAACTGTGACAGAGGG 59.251 47.826 20.97 6.45 35.18 4.30
354 355 3.430218 CGCTTTCTAAACTGTGACAGAGG 59.570 47.826 20.97 6.11 35.18 3.69
355 356 3.120854 GCGCTTTCTAAACTGTGACAGAG 60.121 47.826 20.97 6.52 35.18 3.35
356 357 2.800544 GCGCTTTCTAAACTGTGACAGA 59.199 45.455 20.97 0.00 35.18 3.41
357 358 2.410262 CGCGCTTTCTAAACTGTGACAG 60.410 50.000 11.70 11.70 37.52 3.51
358 359 1.525197 CGCGCTTTCTAAACTGTGACA 59.475 47.619 5.56 0.00 0.00 3.58
359 360 1.525619 ACGCGCTTTCTAAACTGTGAC 59.474 47.619 5.73 0.00 0.00 3.67
360 361 1.860676 ACGCGCTTTCTAAACTGTGA 58.139 45.000 5.73 0.00 0.00 3.58
361 362 2.663279 AACGCGCTTTCTAAACTGTG 57.337 45.000 5.73 0.00 0.00 3.66
362 363 2.610374 TCAAACGCGCTTTCTAAACTGT 59.390 40.909 5.73 0.00 0.00 3.55
363 364 3.247563 TCAAACGCGCTTTCTAAACTG 57.752 42.857 5.73 0.00 0.00 3.16
364 365 3.955771 TTCAAACGCGCTTTCTAAACT 57.044 38.095 5.73 0.00 0.00 2.66
365 366 5.555190 ATTTTCAAACGCGCTTTCTAAAC 57.445 34.783 5.73 0.00 0.00 2.01
366 367 5.974751 AGAATTTTCAAACGCGCTTTCTAAA 59.025 32.000 5.73 4.09 0.00 1.85
367 368 5.516090 AGAATTTTCAAACGCGCTTTCTAA 58.484 33.333 5.73 0.00 0.00 2.10
368 369 5.049680 AGAGAATTTTCAAACGCGCTTTCTA 60.050 36.000 5.73 0.00 0.00 2.10
369 370 3.964909 AGAATTTTCAAACGCGCTTTCT 58.035 36.364 5.73 0.00 0.00 2.52
370 371 3.975035 AGAGAATTTTCAAACGCGCTTTC 59.025 39.130 5.73 0.00 0.00 2.62
371 372 3.730715 CAGAGAATTTTCAAACGCGCTTT 59.269 39.130 5.73 0.00 0.00 3.51
372 373 3.300009 CAGAGAATTTTCAAACGCGCTT 58.700 40.909 5.73 0.00 0.00 4.68
373 374 2.918131 GCAGAGAATTTTCAAACGCGCT 60.918 45.455 5.73 0.00 0.00 5.92
374 375 1.383412 GCAGAGAATTTTCAAACGCGC 59.617 47.619 5.73 0.00 0.00 6.86
375 376 1.638996 CGCAGAGAATTTTCAAACGCG 59.361 47.619 3.53 3.53 0.00 6.01
376 377 2.652172 GTCGCAGAGAATTTTCAAACGC 59.348 45.455 0.00 0.00 36.95 4.84
377 378 3.058914 AGGTCGCAGAGAATTTTCAAACG 60.059 43.478 0.00 0.00 36.95 3.60
378 379 4.489679 AGGTCGCAGAGAATTTTCAAAC 57.510 40.909 0.00 0.00 36.95 2.93
379 380 4.695455 CCTAGGTCGCAGAGAATTTTCAAA 59.305 41.667 0.00 0.00 36.95 2.69
380 381 4.253685 CCTAGGTCGCAGAGAATTTTCAA 58.746 43.478 0.00 0.00 36.95 2.69
381 382 3.260884 ACCTAGGTCGCAGAGAATTTTCA 59.739 43.478 9.21 0.00 36.95 2.69
382 383 3.619038 CACCTAGGTCGCAGAGAATTTTC 59.381 47.826 12.84 0.00 36.95 2.29
383 384 3.600388 CACCTAGGTCGCAGAGAATTTT 58.400 45.455 12.84 0.00 36.95 1.82
384 385 2.093447 CCACCTAGGTCGCAGAGAATTT 60.093 50.000 12.84 0.00 36.95 1.82
385 386 1.482593 CCACCTAGGTCGCAGAGAATT 59.517 52.381 12.84 0.00 36.95 2.17
386 387 1.115467 CCACCTAGGTCGCAGAGAAT 58.885 55.000 12.84 0.00 36.95 2.40
387 388 2.579878 CCACCTAGGTCGCAGAGAA 58.420 57.895 12.84 0.00 36.95 2.87
388 389 4.338815 CCACCTAGGTCGCAGAGA 57.661 61.111 12.84 0.00 36.95 3.10
397 398 6.055588 CACAACCAATAGATAACCACCTAGG 58.944 44.000 7.41 7.41 45.67 3.02
398 399 6.055588 CCACAACCAATAGATAACCACCTAG 58.944 44.000 0.00 0.00 0.00 3.02
399 400 5.727279 TCCACAACCAATAGATAACCACCTA 59.273 40.000 0.00 0.00 0.00 3.08
400 401 4.538490 TCCACAACCAATAGATAACCACCT 59.462 41.667 0.00 0.00 0.00 4.00
401 402 4.850680 TCCACAACCAATAGATAACCACC 58.149 43.478 0.00 0.00 0.00 4.61
402 403 6.183360 CCATTCCACAACCAATAGATAACCAC 60.183 42.308 0.00 0.00 0.00 4.16
403 404 5.890985 CCATTCCACAACCAATAGATAACCA 59.109 40.000 0.00 0.00 0.00 3.67
404 405 5.301805 CCCATTCCACAACCAATAGATAACC 59.698 44.000 0.00 0.00 0.00 2.85
405 406 5.221244 GCCCATTCCACAACCAATAGATAAC 60.221 44.000 0.00 0.00 0.00 1.89
406 407 4.892934 GCCCATTCCACAACCAATAGATAA 59.107 41.667 0.00 0.00 0.00 1.75
407 408 4.167892 AGCCCATTCCACAACCAATAGATA 59.832 41.667 0.00 0.00 0.00 1.98
408 409 3.052642 AGCCCATTCCACAACCAATAGAT 60.053 43.478 0.00 0.00 0.00 1.98
409 410 2.311542 AGCCCATTCCACAACCAATAGA 59.688 45.455 0.00 0.00 0.00 1.98
410 411 2.738743 AGCCCATTCCACAACCAATAG 58.261 47.619 0.00 0.00 0.00 1.73
411 412 2.917713 AGCCCATTCCACAACCAATA 57.082 45.000 0.00 0.00 0.00 1.90
412 413 2.917713 TAGCCCATTCCACAACCAAT 57.082 45.000 0.00 0.00 0.00 3.16
413 414 2.685106 TTAGCCCATTCCACAACCAA 57.315 45.000 0.00 0.00 0.00 3.67
414 415 2.685106 TTTAGCCCATTCCACAACCA 57.315 45.000 0.00 0.00 0.00 3.67
432 433 6.307800 GCATGCGTAGTGTGAATGTTATTTTT 59.692 34.615 0.00 0.00 0.00 1.94
433 434 5.799936 GCATGCGTAGTGTGAATGTTATTTT 59.200 36.000 0.00 0.00 0.00 1.82
434 435 5.106357 TGCATGCGTAGTGTGAATGTTATTT 60.106 36.000 14.09 0.00 0.00 1.40
435 436 4.394610 TGCATGCGTAGTGTGAATGTTATT 59.605 37.500 14.09 0.00 0.00 1.40
436 437 3.938334 TGCATGCGTAGTGTGAATGTTAT 59.062 39.130 14.09 0.00 0.00 1.89
437 438 3.330267 TGCATGCGTAGTGTGAATGTTA 58.670 40.909 14.09 0.00 0.00 2.41
438 439 2.150390 TGCATGCGTAGTGTGAATGTT 58.850 42.857 14.09 0.00 0.00 2.71
439 440 1.807139 TGCATGCGTAGTGTGAATGT 58.193 45.000 14.09 0.00 0.00 2.71
440 441 4.737353 ATATGCATGCGTAGTGTGAATG 57.263 40.909 23.20 0.00 0.00 2.67
441 442 5.783111 TCTATATGCATGCGTAGTGTGAAT 58.217 37.500 23.20 9.61 0.00 2.57
442 443 5.195001 TCTATATGCATGCGTAGTGTGAA 57.805 39.130 23.20 2.26 0.00 3.18
443 444 4.846779 TCTATATGCATGCGTAGTGTGA 57.153 40.909 23.20 15.02 0.00 3.58
444 445 4.984785 ACTTCTATATGCATGCGTAGTGTG 59.015 41.667 23.20 14.35 0.00 3.82
445 446 5.201713 ACTTCTATATGCATGCGTAGTGT 57.798 39.130 23.20 17.37 0.00 3.55
446 447 6.382608 ACTACTTCTATATGCATGCGTAGTG 58.617 40.000 23.20 17.51 36.09 2.74
447 448 6.576662 ACTACTTCTATATGCATGCGTAGT 57.423 37.500 23.20 20.78 33.52 2.73
448 449 7.753659 AGTACTACTTCTATATGCATGCGTAG 58.246 38.462 23.20 20.22 0.00 3.51
449 450 7.683437 AGTACTACTTCTATATGCATGCGTA 57.317 36.000 21.43 21.43 0.00 4.42
450 451 6.576662 AGTACTACTTCTATATGCATGCGT 57.423 37.500 18.07 18.07 0.00 5.24
451 452 9.574458 AATTAGTACTACTTCTATATGCATGCG 57.426 33.333 14.09 0.00 0.00 4.73
476 477 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
477 478 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
478 479 6.662616 CGCATTGCATTTATTTCTAGTAGCT 58.337 36.000 9.69 0.00 0.00 3.32
479 480 5.340667 GCGCATTGCATTTATTTCTAGTAGC 59.659 40.000 9.69 0.00 45.45 3.58
480 481 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
495 496 0.458370 CAAGGTTTAGGGCGCATTGC 60.458 55.000 10.83 0.00 45.38 3.56
496 497 0.887933 ACAAGGTTTAGGGCGCATTG 59.112 50.000 10.83 3.20 0.00 2.82
497 498 1.173913 GACAAGGTTTAGGGCGCATT 58.826 50.000 10.83 0.00 0.00 3.56
498 499 0.328258 AGACAAGGTTTAGGGCGCAT 59.672 50.000 10.83 0.00 0.00 4.73
499 500 0.978151 TAGACAAGGTTTAGGGCGCA 59.022 50.000 10.83 0.00 0.00 6.09
500 501 2.327200 ATAGACAAGGTTTAGGGCGC 57.673 50.000 0.00 0.00 0.00 6.53
501 502 3.374058 CACAATAGACAAGGTTTAGGGCG 59.626 47.826 0.00 0.00 0.00 6.13
502 503 4.585879 TCACAATAGACAAGGTTTAGGGC 58.414 43.478 0.00 0.00 0.00 5.19
503 504 7.368059 GTTTTCACAATAGACAAGGTTTAGGG 58.632 38.462 0.00 0.00 0.00 3.53
504 505 7.075741 CGTTTTCACAATAGACAAGGTTTAGG 58.924 38.462 0.00 0.00 0.00 2.69
505 506 6.577427 GCGTTTTCACAATAGACAAGGTTTAG 59.423 38.462 0.00 0.00 0.00 1.85
506 507 6.038382 TGCGTTTTCACAATAGACAAGGTTTA 59.962 34.615 0.00 0.00 0.00 2.01
507 508 5.163602 TGCGTTTTCACAATAGACAAGGTTT 60.164 36.000 0.00 0.00 0.00 3.27
508 509 4.336993 TGCGTTTTCACAATAGACAAGGTT 59.663 37.500 0.00 0.00 0.00 3.50
509 510 3.880490 TGCGTTTTCACAATAGACAAGGT 59.120 39.130 0.00 0.00 0.00 3.50
510 511 4.219033 GTGCGTTTTCACAATAGACAAGG 58.781 43.478 0.00 0.00 36.97 3.61
511 512 3.900116 CGTGCGTTTTCACAATAGACAAG 59.100 43.478 0.00 0.00 36.80 3.16
512 513 3.846744 GCGTGCGTTTTCACAATAGACAA 60.847 43.478 0.00 0.00 36.80 3.18
513 514 2.349060 GCGTGCGTTTTCACAATAGACA 60.349 45.455 0.00 0.00 36.80 3.41
514 515 2.230864 GCGTGCGTTTTCACAATAGAC 58.769 47.619 0.00 0.00 36.80 2.59
515 516 1.867865 TGCGTGCGTTTTCACAATAGA 59.132 42.857 0.00 0.00 36.80 1.98
516 517 2.308347 TGCGTGCGTTTTCACAATAG 57.692 45.000 0.00 0.00 36.80 1.73
517 518 2.757686 TTGCGTGCGTTTTCACAATA 57.242 40.000 0.00 0.00 36.80 1.90
518 519 1.914634 TTTGCGTGCGTTTTCACAAT 58.085 40.000 0.00 0.00 36.80 2.71
519 520 1.914634 ATTTGCGTGCGTTTTCACAA 58.085 40.000 0.00 0.00 36.80 3.33
520 521 1.914634 AATTTGCGTGCGTTTTCACA 58.085 40.000 0.00 0.00 36.80 3.58
521 522 2.988807 AAATTTGCGTGCGTTTTCAC 57.011 40.000 0.00 0.00 0.00 3.18
522 523 4.027295 CAGTTAAATTTGCGTGCGTTTTCA 60.027 37.500 0.00 0.00 0.00 2.69
523 524 4.027214 ACAGTTAAATTTGCGTGCGTTTTC 60.027 37.500 0.00 0.00 0.00 2.29
524 525 3.860536 ACAGTTAAATTTGCGTGCGTTTT 59.139 34.783 0.00 0.00 0.00 2.43
525 526 3.241784 CACAGTTAAATTTGCGTGCGTTT 59.758 39.130 0.00 0.00 0.00 3.60
526 527 2.786578 CACAGTTAAATTTGCGTGCGTT 59.213 40.909 0.00 0.00 0.00 4.84
527 528 2.223386 ACACAGTTAAATTTGCGTGCGT 60.223 40.909 0.00 0.00 0.00 5.24
528 529 2.380660 ACACAGTTAAATTTGCGTGCG 58.619 42.857 0.00 0.00 0.00 5.34
529 530 3.628017 AGACACAGTTAAATTTGCGTGC 58.372 40.909 0.00 0.74 0.00 5.34
530 531 5.510671 AGAAGACACAGTTAAATTTGCGTG 58.489 37.500 0.00 5.41 0.00 5.34
531 532 5.751243 AGAAGACACAGTTAAATTTGCGT 57.249 34.783 0.00 0.00 0.00 5.24
532 533 7.855904 AGTTTAGAAGACACAGTTAAATTTGCG 59.144 33.333 0.00 0.00 0.00 4.85
533 534 8.958043 CAGTTTAGAAGACACAGTTAAATTTGC 58.042 33.333 0.00 0.00 0.00 3.68
536 537 9.391006 TCACAGTTTAGAAGACACAGTTAAATT 57.609 29.630 0.00 0.00 0.00 1.82
537 538 8.958119 TCACAGTTTAGAAGACACAGTTAAAT 57.042 30.769 0.00 0.00 0.00 1.40
538 539 8.826710 CATCACAGTTTAGAAGACACAGTTAAA 58.173 33.333 0.00 0.00 0.00 1.52
539 540 7.441157 CCATCACAGTTTAGAAGACACAGTTAA 59.559 37.037 0.00 0.00 0.00 2.01
540 541 6.929049 CCATCACAGTTTAGAAGACACAGTTA 59.071 38.462 0.00 0.00 0.00 2.24
541 542 5.760253 CCATCACAGTTTAGAAGACACAGTT 59.240 40.000 0.00 0.00 0.00 3.16
542 543 5.070446 TCCATCACAGTTTAGAAGACACAGT 59.930 40.000 0.00 0.00 0.00 3.55
543 544 5.541845 TCCATCACAGTTTAGAAGACACAG 58.458 41.667 0.00 0.00 0.00 3.66
544 545 5.511373 CCTCCATCACAGTTTAGAAGACACA 60.511 44.000 0.00 0.00 0.00 3.72
545 546 4.932200 CCTCCATCACAGTTTAGAAGACAC 59.068 45.833 0.00 0.00 0.00 3.67
546 547 4.020218 CCCTCCATCACAGTTTAGAAGACA 60.020 45.833 0.00 0.00 0.00 3.41
547 548 4.223032 TCCCTCCATCACAGTTTAGAAGAC 59.777 45.833 0.00 0.00 0.00 3.01
548 549 4.425772 TCCCTCCATCACAGTTTAGAAGA 58.574 43.478 0.00 0.00 0.00 2.87
549 550 4.223923 ACTCCCTCCATCACAGTTTAGAAG 59.776 45.833 0.00 0.00 0.00 2.85
550 551 4.168101 ACTCCCTCCATCACAGTTTAGAA 58.832 43.478 0.00 0.00 0.00 2.10
551 552 3.791320 ACTCCCTCCATCACAGTTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
552 553 4.956700 TCTACTCCCTCCATCACAGTTTAG 59.043 45.833 0.00 0.00 0.00 1.85
553 554 4.942944 TCTACTCCCTCCATCACAGTTTA 58.057 43.478 0.00 0.00 0.00 2.01
554 555 3.791320 TCTACTCCCTCCATCACAGTTT 58.209 45.455 0.00 0.00 0.00 2.66
555 556 3.474798 TCTACTCCCTCCATCACAGTT 57.525 47.619 0.00 0.00 0.00 3.16
556 557 3.697190 ATCTACTCCCTCCATCACAGT 57.303 47.619 0.00 0.00 0.00 3.55
557 558 6.042552 ACAAATATCTACTCCCTCCATCACAG 59.957 42.308 0.00 0.00 0.00 3.66
558 559 5.905331 ACAAATATCTACTCCCTCCATCACA 59.095 40.000 0.00 0.00 0.00 3.58
559 560 6.426646 ACAAATATCTACTCCCTCCATCAC 57.573 41.667 0.00 0.00 0.00 3.06
560 561 7.306013 ACTACAAATATCTACTCCCTCCATCA 58.694 38.462 0.00 0.00 0.00 3.07
561 562 7.784470 ACTACAAATATCTACTCCCTCCATC 57.216 40.000 0.00 0.00 0.00 3.51
562 563 8.568617 AAACTACAAATATCTACTCCCTCCAT 57.431 34.615 0.00 0.00 0.00 3.41
563 564 7.989947 AAACTACAAATATCTACTCCCTCCA 57.010 36.000 0.00 0.00 0.00 3.86
610 614 5.068636 ACATTGATGATGATACAGCCTTCC 58.931 41.667 0.00 0.00 39.15 3.46
611 615 7.918536 ATACATTGATGATGATACAGCCTTC 57.081 36.000 0.00 0.00 39.15 3.46
612 616 8.600668 AGTATACATTGATGATGATACAGCCTT 58.399 33.333 5.50 0.00 39.15 4.35
613 617 8.143673 AGTATACATTGATGATGATACAGCCT 57.856 34.615 5.50 0.00 39.15 4.58
614 618 8.663025 CAAGTATACATTGATGATGATACAGCC 58.337 37.037 5.50 0.00 39.15 4.85
615 619 8.173775 GCAAGTATACATTGATGATGATACAGC 58.826 37.037 15.12 7.25 39.15 4.40
616 620 9.211485 TGCAAGTATACATTGATGATGATACAG 57.789 33.333 15.12 2.53 39.15 2.74
689 701 5.727434 TCCCTCGTCCACTACTTTTTAATC 58.273 41.667 0.00 0.00 0.00 1.75
699 711 0.251653 AACTGCTCCCTCGTCCACTA 60.252 55.000 0.00 0.00 0.00 2.74
705 717 4.021925 GGGCAACTGCTCCCTCGT 62.022 66.667 1.06 0.00 41.70 4.18
805 817 3.682292 GACGGTGGTGATGGGCTCC 62.682 68.421 0.00 0.00 0.00 4.70
906 918 5.152306 ACCCACCACATAGGAATCTACTA 57.848 43.478 0.00 0.00 41.22 1.82
907 919 4.008916 ACCCACCACATAGGAATCTACT 57.991 45.455 0.00 0.00 41.22 2.57
908 920 4.040095 GGTACCCACCACATAGGAATCTAC 59.960 50.000 0.00 0.00 45.04 2.59
909 921 4.228824 GGTACCCACCACATAGGAATCTA 58.771 47.826 0.00 0.00 45.04 1.98
910 922 3.046374 GGTACCCACCACATAGGAATCT 58.954 50.000 0.00 0.00 45.04 2.40
911 923 3.487120 GGTACCCACCACATAGGAATC 57.513 52.381 0.00 0.00 45.04 2.52
1175 1193 3.350909 GAATTTGGTTCCCGGCGGC 62.351 63.158 23.20 7.47 0.00 6.53
1211 1229 3.441163 TCTTATTACTTACAGGCGCGTG 58.559 45.455 27.18 27.18 0.00 5.34
1239 1258 0.468648 GGGGAAAGGGTTCGATCGAT 59.531 55.000 20.18 1.82 34.28 3.59
1256 1275 1.328279 GCCGAATTTGGATAAGGGGG 58.672 55.000 16.55 0.00 0.00 5.40
1261 1280 2.619147 TCGAACGCCGAATTTGGATAA 58.381 42.857 16.55 0.00 45.43 1.75
1263 1282 3.146783 TCGAACGCCGAATTTGGAT 57.853 47.368 16.55 0.00 45.43 3.41
1264 1283 4.677407 TCGAACGCCGAATTTGGA 57.323 50.000 16.55 0.00 45.43 3.53
1288 1315 4.697756 ACGGCAGCAAAGCGCCTA 62.698 61.111 2.29 0.00 42.60 3.93
1306 1333 2.731217 CGGAAAAACTCAGCCAACAAG 58.269 47.619 0.00 0.00 0.00 3.16
1325 1352 2.939003 CGCTGAAAAATCCGCGCG 60.939 61.111 25.67 25.67 39.11 6.86
1360 1388 3.038280 CTCGATCTCCCCAGCGAG 58.962 66.667 0.00 0.00 43.25 5.03
1474 1510 5.391577 AAGGAAGTAAACACCCTAACCAA 57.608 39.130 0.00 0.00 0.00 3.67
1499 1535 2.951229 TTGGTTCCTCCTCCAAGTTC 57.049 50.000 0.00 0.00 38.57 3.01
1500 1536 3.903530 AATTGGTTCCTCCTCCAAGTT 57.096 42.857 0.00 0.00 45.12 2.66
1501 1537 3.767711 GAAATTGGTTCCTCCTCCAAGT 58.232 45.455 0.00 0.00 45.12 3.16
1545 1581 1.134877 CATGCAGGAAAGAGCGAGAGA 60.135 52.381 0.00 0.00 0.00 3.10
1630 1672 7.017551 ACAATCCATATAACTATTCCAGGAGCA 59.982 37.037 0.00 0.00 0.00 4.26
1637 1679 9.533831 AAATCCCACAATCCATATAACTATTCC 57.466 33.333 0.00 0.00 0.00 3.01
1657 1699 1.230212 CCAGGTAGCCCCAAATCCC 59.770 63.158 0.00 0.00 34.66 3.85
1681 1723 9.665264 GTGGACTTTTACTGTTAAATGAAGAAG 57.335 33.333 0.00 0.00 0.00 2.85
1782 1828 8.627208 AATATCCATTAGTGATGCCAAGTAAG 57.373 34.615 0.00 0.00 34.25 2.34
1800 1846 9.381038 GTAAGAGCATAGGGGATATAATATCCA 57.619 37.037 0.00 0.00 39.93 3.41
1819 1870 5.128919 AGATGTCATTCCCATTGTAAGAGC 58.871 41.667 0.00 0.00 0.00 4.09
1840 1891 4.546829 AACCTTCACGCATTAGGTAAGA 57.453 40.909 0.00 0.00 41.33 2.10
1892 1943 8.737175 CCTATTAACCTTCACGCACTAGATATA 58.263 37.037 0.00 0.00 0.00 0.86
1893 1944 7.232941 ACCTATTAACCTTCACGCACTAGATAT 59.767 37.037 0.00 0.00 0.00 1.63
1894 1945 6.548622 ACCTATTAACCTTCACGCACTAGATA 59.451 38.462 0.00 0.00 0.00 1.98
1895 1946 5.363005 ACCTATTAACCTTCACGCACTAGAT 59.637 40.000 0.00 0.00 0.00 1.98
1896 1947 4.708421 ACCTATTAACCTTCACGCACTAGA 59.292 41.667 0.00 0.00 0.00 2.43
1897 1948 5.007385 ACCTATTAACCTTCACGCACTAG 57.993 43.478 0.00 0.00 0.00 2.57
1898 1949 6.528537 TTACCTATTAACCTTCACGCACTA 57.471 37.500 0.00 0.00 0.00 2.74
1937 1988 9.804758 ATACTCTACAATTTAGTCTTGTGTAGC 57.195 33.333 4.61 0.00 40.84 3.58
1998 2052 4.576879 TGTTGGTTTATACACGTGGCATA 58.423 39.130 21.57 13.66 0.00 3.14
2691 2750 6.381498 TTGGGAAGAAATCTACACCATACA 57.619 37.500 0.00 0.00 0.00 2.29
2697 2756 4.822350 GGGCTATTGGGAAGAAATCTACAC 59.178 45.833 0.00 0.00 0.00 2.90
2699 2758 4.141251 TGGGGCTATTGGGAAGAAATCTAC 60.141 45.833 0.00 0.00 0.00 2.59
2710 2769 0.478507 CCTAAGGTGGGGCTATTGGG 59.521 60.000 0.00 0.00 0.00 4.12
3184 3251 4.804139 CGGTCTATAGTTGTTACTTGCAGG 59.196 45.833 0.00 0.00 35.78 4.85
3424 3492 4.212004 TGCACATTTCGAGAAGTTCTTCAG 59.788 41.667 6.88 2.47 0.00 3.02
3563 3631 1.748493 GCCCGCATGACAGGAAATAAA 59.252 47.619 0.00 0.00 0.00 1.40
3595 3666 2.290260 TGTACTGTTGGGCCATGAGAAG 60.290 50.000 7.26 3.41 0.00 2.85
3923 3994 4.159879 AGTCTGGAAACCTACGAACATAGG 59.840 45.833 0.00 0.00 46.41 2.57
3931 4002 3.118738 AGGCATTAGTCTGGAAACCTACG 60.119 47.826 0.00 0.00 0.00 3.51
4093 4164 6.541641 GTGTGCATGAAATATCCTCTCTTTCT 59.458 38.462 0.00 0.00 31.66 2.52
4094 4165 6.541641 AGTGTGCATGAAATATCCTCTCTTTC 59.458 38.462 0.00 0.00 0.00 2.62
4151 4225 5.936372 TCTGGAAGAAATGAAGATGTGTCAG 59.064 40.000 0.00 0.00 42.31 3.51
4168 4243 1.211457 CCATTCAGGACCCTCTGGAAG 59.789 57.143 3.82 0.00 41.22 3.46
4281 4356 6.662755 TCTTCATGTCCAACCAAGCTTATAT 58.337 36.000 0.00 0.00 0.00 0.86
4468 4549 6.498303 TGTGATATATACTTGCCTCCTCATGT 59.502 38.462 0.00 0.00 0.00 3.21
4575 4656 8.574196 AAAACTTTTCCTGTTTACATCATTCG 57.426 30.769 0.00 0.00 36.72 3.34
4727 4815 9.457436 TTTTCCTTACTTTTACTTCTTCACTGT 57.543 29.630 0.00 0.00 0.00 3.55
4753 4841 8.773216 AGGCTCTTAGATAGATGGTTAGTTTTT 58.227 33.333 0.00 0.00 30.92 1.94
4754 4842 8.325477 AGGCTCTTAGATAGATGGTTAGTTTT 57.675 34.615 0.00 0.00 30.92 2.43
4755 4843 7.922699 AGGCTCTTAGATAGATGGTTAGTTT 57.077 36.000 0.00 0.00 30.92 2.66
4756 4844 8.449625 TCTAGGCTCTTAGATAGATGGTTAGTT 58.550 37.037 0.00 0.00 30.92 2.24
4757 4845 7.991174 TCTAGGCTCTTAGATAGATGGTTAGT 58.009 38.462 0.00 0.00 30.92 2.24
4990 5114 5.076873 GCTTGGGCCATTTGGAATACTATA 58.923 41.667 7.26 0.00 37.39 1.31
4991 5115 3.897505 GCTTGGGCCATTTGGAATACTAT 59.102 43.478 7.26 0.00 37.39 2.12
5029 5153 3.290710 GAATCTGCCCTTTGCTATGGAA 58.709 45.455 1.55 0.00 42.00 3.53
5064 5188 6.383436 TGGGATTCAAGATCAAATTGGCAATA 59.617 34.615 14.05 0.00 0.00 1.90
5116 5240 6.003326 TGCTGAAATCTGTTGGAAGAACATA 58.997 36.000 0.00 0.00 0.00 2.29
5119 5243 4.836125 TGCTGAAATCTGTTGGAAGAAC 57.164 40.909 0.00 0.00 0.00 3.01
5136 5260 1.551430 TCTTCCATTGCCCATTTGCTG 59.449 47.619 0.00 0.00 0.00 4.41
5239 5366 6.997655 ACTTCTGAATGATAGACTGAACACA 58.002 36.000 0.00 0.00 0.00 3.72
5240 5367 7.221838 GCTACTTCTGAATGATAGACTGAACAC 59.778 40.741 7.35 0.00 0.00 3.32
5241 5368 7.261325 GCTACTTCTGAATGATAGACTGAACA 58.739 38.462 7.35 0.00 0.00 3.18
5242 5369 6.699642 GGCTACTTCTGAATGATAGACTGAAC 59.300 42.308 7.35 0.00 0.00 3.18
5244 5371 5.893824 TGGCTACTTCTGAATGATAGACTGA 59.106 40.000 9.45 0.00 0.00 3.41
5245 5372 6.040278 TCTGGCTACTTCTGAATGATAGACTG 59.960 42.308 9.45 9.02 0.00 3.51
5246 5373 6.132658 TCTGGCTACTTCTGAATGATAGACT 58.867 40.000 9.45 0.00 0.00 3.24
5247 5374 6.398234 TCTGGCTACTTCTGAATGATAGAC 57.602 41.667 7.35 5.48 0.00 2.59
5248 5375 7.423844 TTTCTGGCTACTTCTGAATGATAGA 57.576 36.000 7.35 0.00 0.00 1.98
5249 5376 8.498054 TTTTTCTGGCTACTTCTGAATGATAG 57.502 34.615 0.00 0.00 0.00 2.08
5251 5378 7.951347 ATTTTTCTGGCTACTTCTGAATGAT 57.049 32.000 0.00 0.00 0.00 2.45
5279 5411 2.113860 TGTAATCAGCTCAAGCACCC 57.886 50.000 4.59 0.00 45.16 4.61
5280 5412 3.077359 ACTTGTAATCAGCTCAAGCACC 58.923 45.455 11.02 0.00 45.16 5.01
5303 5435 1.604593 CCACCACCTGGCTTTGGAG 60.605 63.158 8.68 1.09 39.32 3.86
5318 5450 5.727434 AGATTCCATTTCAATTCTTGCCAC 58.273 37.500 0.00 0.00 0.00 5.01
5386 5522 4.706962 GCCTGATTCTTGGTAATTTCCAGT 59.293 41.667 3.84 0.00 38.80 4.00
5541 5743 7.422465 AGAATAATTCCATTTGCCTTTGCTA 57.578 32.000 0.00 0.00 38.71 3.49
5542 5744 6.303903 AGAATAATTCCATTTGCCTTTGCT 57.696 33.333 0.00 0.00 38.71 3.91
5543 5745 6.990341 AAGAATAATTCCATTTGCCTTTGC 57.010 33.333 0.00 0.00 38.26 3.68
5547 5749 9.435688 GTGTTAAAAGAATAATTCCATTTGCCT 57.564 29.630 0.00 0.00 0.00 4.75
5548 5750 9.435688 AGTGTTAAAAGAATAATTCCATTTGCC 57.564 29.630 0.00 0.00 0.00 4.52
5568 5770 9.897744 GATCAATTTCAGTTCAAATGAGTGTTA 57.102 29.630 0.00 0.00 0.00 2.41
5569 5771 8.415553 TGATCAATTTCAGTTCAAATGAGTGTT 58.584 29.630 0.00 0.00 0.00 3.32
5570 5772 7.944061 TGATCAATTTCAGTTCAAATGAGTGT 58.056 30.769 0.00 0.00 0.00 3.55
5571 5773 8.806177 TTGATCAATTTCAGTTCAAATGAGTG 57.194 30.769 3.38 0.00 0.00 3.51
5572 5774 9.991906 ATTTGATCAATTTCAGTTCAAATGAGT 57.008 25.926 9.40 0.00 40.82 3.41
5576 5778 8.842358 AGCATTTGATCAATTTCAGTTCAAAT 57.158 26.923 9.40 3.95 42.02 2.32
5577 5779 8.665643 AAGCATTTGATCAATTTCAGTTCAAA 57.334 26.923 9.40 0.00 38.38 2.69
5578 5780 8.145767 AGAAGCATTTGATCAATTTCAGTTCAA 58.854 29.630 9.40 0.00 0.00 2.69
5579 5781 7.663827 AGAAGCATTTGATCAATTTCAGTTCA 58.336 30.769 9.40 0.00 0.00 3.18
5580 5782 9.798994 ATAGAAGCATTTGATCAATTTCAGTTC 57.201 29.630 9.40 8.04 0.00 3.01
5589 5791 9.859427 CCTTTGTTAATAGAAGCATTTGATCAA 57.141 29.630 3.38 3.38 0.00 2.57
5590 5792 7.975616 GCCTTTGTTAATAGAAGCATTTGATCA 59.024 33.333 0.00 0.00 0.00 2.92
5591 5793 7.975616 TGCCTTTGTTAATAGAAGCATTTGATC 59.024 33.333 0.00 0.00 0.00 2.92
5592 5794 7.839907 TGCCTTTGTTAATAGAAGCATTTGAT 58.160 30.769 0.00 0.00 0.00 2.57
5593 5795 7.225784 TGCCTTTGTTAATAGAAGCATTTGA 57.774 32.000 0.00 0.00 0.00 2.69
5594 5796 7.887996 TTGCCTTTGTTAATAGAAGCATTTG 57.112 32.000 0.00 0.00 0.00 2.32
5595 5797 8.938906 CATTTGCCTTTGTTAATAGAAGCATTT 58.061 29.630 0.00 0.00 0.00 2.32
5596 5798 7.550196 CCATTTGCCTTTGTTAATAGAAGCATT 59.450 33.333 0.00 0.00 0.00 3.56
5597 5799 7.043565 CCATTTGCCTTTGTTAATAGAAGCAT 58.956 34.615 0.00 0.00 0.00 3.79
5598 5800 6.210385 TCCATTTGCCTTTGTTAATAGAAGCA 59.790 34.615 0.00 0.00 0.00 3.91
5599 5801 6.630071 TCCATTTGCCTTTGTTAATAGAAGC 58.370 36.000 0.00 0.00 0.00 3.86
5600 5802 9.657419 AATTCCATTTGCCTTTGTTAATAGAAG 57.343 29.630 0.00 0.00 0.00 2.85
5847 6051 0.251341 GCTGTCTTCAATGGTGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
5854 6058 2.719739 ACAGGGATGCTGTCTTCAATG 58.280 47.619 0.00 0.00 0.00 2.82
5863 6067 1.608055 TGTCAACAACAGGGATGCTG 58.392 50.000 0.00 0.00 32.81 4.41
5970 6174 2.673775 TGACAAGGGCTTTCCATGAA 57.326 45.000 0.00 0.00 37.64 2.57
6072 6280 1.895798 TGCACAGACTACCTCTTGGAG 59.104 52.381 0.00 0.00 37.04 3.86
6232 6458 9.105844 AGGGTTACACTCTAATAATAGCATGAT 57.894 33.333 0.00 0.00 0.00 2.45
6365 6594 1.243902 TTCCTTTGAATGTGGTCGGC 58.756 50.000 0.00 0.00 0.00 5.54
6378 6607 1.075536 AGCCAAGGTCCGAATTCCTTT 59.924 47.619 0.00 0.00 41.44 3.11
6587 6816 5.105473 CCGTCTTACCAGAGTTGAAAGGATA 60.105 44.000 0.00 0.00 0.00 2.59
6680 6909 1.449246 GGACGCATTGAGCAGCTCT 60.449 57.895 23.15 1.24 46.13 4.09
6707 6936 3.423154 GCTTCCAAGGCGTCCACG 61.423 66.667 0.00 0.00 43.27 4.94
6822 7054 6.391227 AACCTTGTTGATTTGTTACAGGAG 57.609 37.500 0.00 0.00 0.00 3.69
6866 7098 3.636153 AGAGGGCCTGTAGATGAAAAC 57.364 47.619 12.95 0.00 0.00 2.43
6989 7221 4.142138 GGTAGTACCATCTTCAGGTGTCTG 60.142 50.000 14.82 0.00 40.26 3.51
7010 7242 4.917906 AGCAGAAGACCTTAAAGATGGT 57.082 40.909 0.00 0.00 39.60 3.55
7016 7248 5.780793 AGAAGAGGTAGCAGAAGACCTTAAA 59.219 40.000 0.00 0.00 46.36 1.52
7096 7328 3.057104 TCATCGTCGTTTAAGCTCCTCAA 60.057 43.478 0.00 0.00 0.00 3.02
7108 7340 2.058595 CCTCCCCCTCATCGTCGTT 61.059 63.158 0.00 0.00 0.00 3.85
7118 7352 1.081277 GAAGTGTCTCCCTCCCCCT 59.919 63.158 0.00 0.00 0.00 4.79
7123 7357 0.179097 GCCGATGAAGTGTCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
7124 7358 1.901085 GCCGATGAAGTGTCTCCCT 59.099 57.895 0.00 0.00 0.00 4.20
7127 7361 0.526524 CTCCGCCGATGAAGTGTCTC 60.527 60.000 0.00 0.00 0.00 3.36
7128 7362 1.513158 CTCCGCCGATGAAGTGTCT 59.487 57.895 0.00 0.00 0.00 3.41
7130 7364 2.125512 GCTCCGCCGATGAAGTGT 60.126 61.111 0.00 0.00 0.00 3.55
7234 7473 4.935352 AATTACATGCATTTACGCCCAT 57.065 36.364 0.00 0.00 0.00 4.00
7237 7476 4.862018 ACACAAATTACATGCATTTACGCC 59.138 37.500 0.00 0.00 0.00 5.68
7239 7478 7.167302 CCCATACACAAATTACATGCATTTACG 59.833 37.037 0.00 0.00 0.00 3.18
7312 7551 1.047596 TCAGGATCCTCAGCCTCAGC 61.048 60.000 12.69 0.00 35.64 4.26
7449 7692 8.102676 TCACAATCGGTTCATCCAATGATATAT 58.897 33.333 0.00 0.00 39.39 0.86
7450 7693 7.387673 GTCACAATCGGTTCATCCAATGATATA 59.612 37.037 0.00 0.00 39.39 0.86
7451 7694 6.205464 GTCACAATCGGTTCATCCAATGATAT 59.795 38.462 0.00 0.00 39.39 1.63
7460 7703 3.074412 ACAAGGTCACAATCGGTTCATC 58.926 45.455 0.00 0.00 0.00 2.92
7512 7757 6.781138 TGAATCGGTCGAATTAAAAAGATGG 58.219 36.000 0.00 0.00 0.00 3.51
7534 7779 6.212993 TGGAATTCAAATTTCCATCACCATGA 59.787 34.615 7.93 0.00 30.57 3.07
7556 7801 0.112412 GAAACAAGCCCTCCCTTGGA 59.888 55.000 6.82 0.00 44.98 3.53
7570 7815 1.522806 ACGCGTGCTTCAGGAAACA 60.523 52.632 12.93 0.00 0.00 2.83
7592 7838 4.148838 TCGGAATCTGGGTTTTTGAACAT 58.851 39.130 0.00 0.00 0.00 2.71
7685 7943 7.667043 TTGAACAGCAGTACAATAAAGTAGG 57.333 36.000 0.00 0.00 0.00 3.18
7696 7954 5.409520 TCATCTCAACATTGAACAGCAGTAC 59.590 40.000 0.00 0.00 36.64 2.73
7697 7955 5.550290 TCATCTCAACATTGAACAGCAGTA 58.450 37.500 0.00 0.00 36.64 2.74
7746 8038 4.112634 CGCGAAAATTCAGACTAGATCCA 58.887 43.478 0.00 0.00 0.00 3.41
7751 8043 6.253727 AGTGTAATCGCGAAAATTCAGACTAG 59.746 38.462 15.24 0.00 0.00 2.57
7790 8082 4.523943 TGTGCAAATTATGAAGCTGAACCT 59.476 37.500 0.00 0.00 0.00 3.50
7885 8177 5.007234 CGTGTCACTGTTGGTAAGAAAATCA 59.993 40.000 0.65 0.00 0.00 2.57
7998 8290 2.932614 CACGAGTTATGAAGCTGAAGGG 59.067 50.000 0.00 0.00 0.00 3.95
8006 8298 1.654105 GTCCGCACACGAGTTATGAAG 59.346 52.381 0.00 0.00 43.93 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.