Multiple sequence alignment - TraesCS1A01G366300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G366300 chr1A 100.000 2962 0 0 1 2962 545026251 545023290 0.000000e+00 5470.0
1 TraesCS1A01G366300 chr1A 85.282 992 100 24 1031 1977 545009461 545008471 0.000000e+00 981.0
2 TraesCS1A01G366300 chr1A 82.879 1028 111 33 1000 1965 544748298 544749322 0.000000e+00 863.0
3 TraesCS1A01G366300 chr1A 85.395 671 74 13 1339 1993 545000581 545001243 0.000000e+00 675.0
4 TraesCS1A01G366300 chr1A 80.363 606 76 24 687 1271 544999872 545000455 1.270000e-113 420.0
5 TraesCS1A01G366300 chr1A 88.365 318 32 3 1310 1623 545299644 545299960 7.750000e-101 377.0
6 TraesCS1A01G366300 chr1A 96.970 33 1 0 1966 1998 544749347 544749379 4.120000e-04 56.5
7 TraesCS1A01G366300 chr1B 83.106 1320 150 46 722 1993 615731880 615733174 0.000000e+00 1134.0
8 TraesCS1A01G366300 chr1B 89.461 816 61 8 1349 2161 616132242 616131449 0.000000e+00 1007.0
9 TraesCS1A01G366300 chr1B 86.477 880 75 20 1000 1836 615581738 615582616 0.000000e+00 926.0
10 TraesCS1A01G366300 chr1B 87.760 817 68 12 2151 2960 616130907 616130116 0.000000e+00 926.0
11 TraesCS1A01G366300 chr1B 81.343 1072 137 36 823 1834 615625428 615626496 0.000000e+00 813.0
12 TraesCS1A01G366300 chr1B 83.701 816 70 23 490 1272 616137175 616136390 0.000000e+00 712.0
13 TraesCS1A01G366300 chr1B 86.164 636 64 10 1349 1977 615744808 615744190 0.000000e+00 665.0
14 TraesCS1A01G366300 chr1B 81.905 630 83 12 1310 1922 616566658 616567273 1.230000e-138 503.0
15 TraesCS1A01G366300 chr1D 82.263 1370 158 51 677 1977 449923937 449922584 0.000000e+00 1105.0
16 TraesCS1A01G366300 chr1D 90.339 766 42 11 1351 2112 449983003 449982266 0.000000e+00 976.0
17 TraesCS1A01G366300 chr1D 87.835 822 66 13 2151 2962 449981703 449980906 0.000000e+00 933.0
18 TraesCS1A01G366300 chr1D 91.008 645 40 5 644 1272 449983804 449983162 0.000000e+00 854.0
19 TraesCS1A01G366300 chr1D 84.970 672 79 13 1339 1993 449847234 449847900 0.000000e+00 662.0
20 TraesCS1A01G366300 chr1D 78.972 1051 116 54 1000 1973 449752638 449753660 1.170000e-173 619.0
21 TraesCS1A01G366300 chr1D 84.084 622 78 7 1310 1922 450046596 450047205 5.500000e-162 580.0
22 TraesCS1A01G366300 chr1D 85.870 92 13 0 1852 1943 449661322 449661413 6.760000e-17 99.0
23 TraesCS1A01G366300 chr6B 74.419 258 51 13 2340 2584 715635183 715635438 2.430000e-16 97.1
24 TraesCS1A01G366300 chr5D 92.000 50 4 0 315 364 558442810 558442761 1.470000e-08 71.3
25 TraesCS1A01G366300 chr3B 100.000 30 0 0 331 360 719426320 719426349 4.120000e-04 56.5
26 TraesCS1A01G366300 chr6D 82.540 63 10 1 311 373 391561221 391561160 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G366300 chr1A 545023290 545026251 2961 True 5470.00 5470 100.000000 1 2962 1 chr1A.!!$R2 2961
1 TraesCS1A01G366300 chr1A 545008471 545009461 990 True 981.00 981 85.282000 1031 1977 1 chr1A.!!$R1 946
2 TraesCS1A01G366300 chr1A 544999872 545001243 1371 False 547.50 675 82.879000 687 1993 2 chr1A.!!$F3 1306
3 TraesCS1A01G366300 chr1A 544748298 544749379 1081 False 459.75 863 89.924500 1000 1998 2 chr1A.!!$F2 998
4 TraesCS1A01G366300 chr1B 615731880 615733174 1294 False 1134.00 1134 83.106000 722 1993 1 chr1B.!!$F3 1271
5 TraesCS1A01G366300 chr1B 616130116 616132242 2126 True 966.50 1007 88.610500 1349 2960 2 chr1B.!!$R3 1611
6 TraesCS1A01G366300 chr1B 615581738 615582616 878 False 926.00 926 86.477000 1000 1836 1 chr1B.!!$F1 836
7 TraesCS1A01G366300 chr1B 615625428 615626496 1068 False 813.00 813 81.343000 823 1834 1 chr1B.!!$F2 1011
8 TraesCS1A01G366300 chr1B 616136390 616137175 785 True 712.00 712 83.701000 490 1272 1 chr1B.!!$R2 782
9 TraesCS1A01G366300 chr1B 615744190 615744808 618 True 665.00 665 86.164000 1349 1977 1 chr1B.!!$R1 628
10 TraesCS1A01G366300 chr1B 616566658 616567273 615 False 503.00 503 81.905000 1310 1922 1 chr1B.!!$F4 612
11 TraesCS1A01G366300 chr1D 449922584 449923937 1353 True 1105.00 1105 82.263000 677 1977 1 chr1D.!!$R1 1300
12 TraesCS1A01G366300 chr1D 449980906 449983804 2898 True 921.00 976 89.727333 644 2962 3 chr1D.!!$R2 2318
13 TraesCS1A01G366300 chr1D 449847234 449847900 666 False 662.00 662 84.970000 1339 1993 1 chr1D.!!$F3 654
14 TraesCS1A01G366300 chr1D 449752638 449753660 1022 False 619.00 619 78.972000 1000 1973 1 chr1D.!!$F2 973
15 TraesCS1A01G366300 chr1D 450046596 450047205 609 False 580.00 580 84.084000 1310 1922 1 chr1D.!!$F4 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.030101 TACATCGCACGATCATCGCA 59.970 50.0 7.05 0.0 45.12 5.1 F
282 283 0.036388 CGGGCTACATAATCGGGCAT 60.036 55.0 0.00 0.0 0.00 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 1972 0.038159 GGTTCTCTGACACGTCCAGG 60.038 60.0 12.84 5.9 32.73 4.45 R
2204 3099 0.106918 ACTTGCCCGAAAGTGACCAA 60.107 50.0 0.00 0.0 38.95 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.894768 AAGAGATATTTCTACATGCTACAACC 57.105 34.615 0.00 0.00 30.30 3.77
34 35 7.148641 AGAGATATTTCTACATGCTACAACCG 58.851 38.462 0.00 0.00 30.30 4.44
35 36 7.014326 AGAGATATTTCTACATGCTACAACCGA 59.986 37.037 0.00 0.00 30.30 4.69
36 37 7.671302 AGATATTTCTACATGCTACAACCGAT 58.329 34.615 0.00 0.00 0.00 4.18
37 38 5.991328 ATTTCTACATGCTACAACCGATG 57.009 39.130 0.00 0.00 0.00 3.84
38 39 4.465632 TTCTACATGCTACAACCGATGT 57.534 40.909 0.00 0.00 46.36 3.06
39 40 4.041740 TCTACATGCTACAACCGATGTC 57.958 45.455 0.00 0.00 42.70 3.06
40 41 2.024176 ACATGCTACAACCGATGTCC 57.976 50.000 0.00 0.00 42.70 4.02
41 42 1.299541 CATGCTACAACCGATGTCCC 58.700 55.000 0.00 0.00 42.70 4.46
42 43 0.908910 ATGCTACAACCGATGTCCCA 59.091 50.000 0.00 0.00 42.70 4.37
43 44 0.908910 TGCTACAACCGATGTCCCAT 59.091 50.000 0.00 0.00 42.70 4.00
44 45 1.134521 TGCTACAACCGATGTCCCATC 60.135 52.381 0.00 0.00 42.70 3.51
45 46 1.810412 GCTACAACCGATGTCCCATCC 60.810 57.143 0.00 0.00 42.70 3.51
46 47 0.462375 TACAACCGATGTCCCATCCG 59.538 55.000 0.00 0.00 42.70 4.18
47 48 1.523711 CAACCGATGTCCCATCCGG 60.524 63.158 0.00 0.00 46.65 5.14
48 49 3.400599 AACCGATGTCCCATCCGGC 62.401 63.158 0.00 0.00 45.29 6.13
49 50 3.550431 CCGATGTCCCATCCGGCT 61.550 66.667 0.00 0.00 35.29 5.52
50 51 2.207229 CCGATGTCCCATCCGGCTA 61.207 63.158 0.00 0.00 35.29 3.93
51 52 1.006102 CGATGTCCCATCCGGCTAC 60.006 63.158 0.00 0.00 0.00 3.58
52 53 1.744320 CGATGTCCCATCCGGCTACA 61.744 60.000 0.00 0.00 32.90 2.74
53 54 0.468226 GATGTCCCATCCGGCTACAA 59.532 55.000 0.00 0.00 32.33 2.41
54 55 1.072331 GATGTCCCATCCGGCTACAAT 59.928 52.381 0.00 0.00 32.33 2.71
55 56 0.468226 TGTCCCATCCGGCTACAATC 59.532 55.000 0.00 0.00 0.00 2.67
56 57 0.600255 GTCCCATCCGGCTACAATCG 60.600 60.000 0.00 0.00 0.00 3.34
57 58 1.301716 CCCATCCGGCTACAATCGG 60.302 63.158 0.00 0.00 46.89 4.18
58 59 1.445942 CCATCCGGCTACAATCGGT 59.554 57.895 0.00 0.00 45.79 4.69
59 60 0.880278 CCATCCGGCTACAATCGGTG 60.880 60.000 0.00 0.00 45.79 4.94
60 61 0.179084 CATCCGGCTACAATCGGTGT 60.179 55.000 0.00 0.00 45.79 4.16
61 62 0.104304 ATCCGGCTACAATCGGTGTC 59.896 55.000 0.00 0.00 45.79 3.67
62 63 1.876714 CCGGCTACAATCGGTGTCG 60.877 63.158 0.00 0.00 41.98 4.35
63 64 2.514013 CGGCTACAATCGGTGTCGC 61.514 63.158 7.75 7.75 45.80 5.19
64 65 2.995482 GCTACAATCGGTGTCGCG 59.005 61.111 0.00 0.00 38.94 5.87
65 66 1.804326 GCTACAATCGGTGTCGCGT 60.804 57.895 5.77 0.00 38.94 6.01
66 67 1.349259 GCTACAATCGGTGTCGCGTT 61.349 55.000 5.77 0.00 38.94 4.84
67 68 1.065358 CTACAATCGGTGTCGCGTTT 58.935 50.000 5.77 0.00 41.98 3.60
68 69 1.458064 CTACAATCGGTGTCGCGTTTT 59.542 47.619 5.77 0.00 41.98 2.43
69 70 0.041663 ACAATCGGTGTCGCGTTTTG 60.042 50.000 5.77 3.70 34.38 2.44
70 71 1.082366 AATCGGTGTCGCGTTTTGC 60.082 52.632 5.77 0.00 41.47 3.68
71 72 1.503818 AATCGGTGTCGCGTTTTGCT 61.504 50.000 5.77 0.00 43.27 3.91
72 73 0.668096 ATCGGTGTCGCGTTTTGCTA 60.668 50.000 5.77 0.00 43.27 3.49
73 74 1.154727 CGGTGTCGCGTTTTGCTAC 60.155 57.895 5.77 0.00 43.27 3.58
74 75 1.823260 CGGTGTCGCGTTTTGCTACA 61.823 55.000 5.77 0.00 45.91 2.74
77 78 0.436913 TGTCGCGTTTTGCTACATCG 59.563 50.000 5.77 0.00 43.56 3.84
78 79 0.852007 GTCGCGTTTTGCTACATCGC 60.852 55.000 5.77 0.00 43.27 4.58
79 80 1.131623 CGCGTTTTGCTACATCGCA 59.868 52.632 0.00 0.00 45.77 5.10
80 81 1.120147 CGCGTTTTGCTACATCGCAC 61.120 55.000 0.00 0.00 45.77 5.34
81 82 1.120147 GCGTTTTGCTACATCGCACG 61.120 55.000 0.00 0.00 45.01 5.34
82 83 0.436913 CGTTTTGCTACATCGCACGA 59.563 50.000 0.00 0.00 40.09 4.35
83 84 1.060553 CGTTTTGCTACATCGCACGAT 59.939 47.619 0.00 0.00 40.09 3.73
84 85 2.694043 GTTTTGCTACATCGCACGATC 58.306 47.619 1.86 0.00 40.09 3.69
85 86 2.003196 TTTGCTACATCGCACGATCA 57.997 45.000 1.86 0.00 40.09 2.92
86 87 2.223537 TTGCTACATCGCACGATCAT 57.776 45.000 1.86 0.00 40.09 2.45
87 88 1.770957 TGCTACATCGCACGATCATC 58.229 50.000 1.86 0.00 34.44 2.92
88 89 0.705094 GCTACATCGCACGATCATCG 59.295 55.000 5.22 5.22 46.93 3.84
89 90 0.705094 CTACATCGCACGATCATCGC 59.295 55.000 7.05 0.00 45.12 4.58
90 91 0.030101 TACATCGCACGATCATCGCA 59.970 50.000 7.05 0.00 45.12 5.10
91 92 0.598419 ACATCGCACGATCATCGCAT 60.598 50.000 7.05 0.00 45.12 4.73
92 93 0.509929 CATCGCACGATCATCGCATT 59.490 50.000 7.05 0.00 45.12 3.56
93 94 1.070376 CATCGCACGATCATCGCATTT 60.070 47.619 7.05 0.00 45.12 2.32
94 95 1.006086 TCGCACGATCATCGCATTTT 58.994 45.000 7.05 0.00 45.12 1.82
95 96 1.005032 TCGCACGATCATCGCATTTTC 60.005 47.619 7.05 0.00 45.12 2.29
96 97 1.746760 GCACGATCATCGCATTTTCC 58.253 50.000 7.05 0.00 45.12 3.13
97 98 1.063912 GCACGATCATCGCATTTTCCA 59.936 47.619 7.05 0.00 45.12 3.53
98 99 2.852143 GCACGATCATCGCATTTTCCAG 60.852 50.000 7.05 0.00 45.12 3.86
99 100 2.352651 CACGATCATCGCATTTTCCAGT 59.647 45.455 7.05 0.00 45.12 4.00
100 101 3.555547 CACGATCATCGCATTTTCCAGTA 59.444 43.478 7.05 0.00 45.12 2.74
101 102 3.555956 ACGATCATCGCATTTTCCAGTAC 59.444 43.478 7.05 0.00 45.12 2.73
102 103 3.555547 CGATCATCGCATTTTCCAGTACA 59.444 43.478 0.00 0.00 31.14 2.90
103 104 4.033932 CGATCATCGCATTTTCCAGTACAA 59.966 41.667 0.00 0.00 31.14 2.41
104 105 5.277490 CGATCATCGCATTTTCCAGTACAAT 60.277 40.000 0.00 0.00 31.14 2.71
105 106 5.484173 TCATCGCATTTTCCAGTACAATC 57.516 39.130 0.00 0.00 0.00 2.67
106 107 4.033932 TCATCGCATTTTCCAGTACAATCG 59.966 41.667 0.00 0.00 0.00 3.34
107 108 2.675844 TCGCATTTTCCAGTACAATCGG 59.324 45.455 0.00 0.00 0.00 4.18
108 109 2.791158 CGCATTTTCCAGTACAATCGGC 60.791 50.000 0.00 0.00 0.00 5.54
109 110 2.791158 GCATTTTCCAGTACAATCGGCG 60.791 50.000 0.00 0.00 0.00 6.46
110 111 2.172851 TTTTCCAGTACAATCGGCGT 57.827 45.000 6.85 0.00 0.00 5.68
111 112 1.717194 TTTCCAGTACAATCGGCGTC 58.283 50.000 6.85 0.00 0.00 5.19
112 113 0.604073 TTCCAGTACAATCGGCGTCA 59.396 50.000 6.85 0.00 0.00 4.35
113 114 0.108992 TCCAGTACAATCGGCGTCAC 60.109 55.000 6.85 0.00 0.00 3.67
114 115 1.410737 CCAGTACAATCGGCGTCACG 61.411 60.000 6.85 0.00 0.00 4.35
126 127 3.759550 CGTCACGCACACTACTACA 57.240 52.632 0.00 0.00 0.00 2.74
127 128 2.040714 CGTCACGCACACTACTACAA 57.959 50.000 0.00 0.00 0.00 2.41
128 129 1.712350 CGTCACGCACACTACTACAAC 59.288 52.381 0.00 0.00 0.00 3.32
129 130 2.056577 GTCACGCACACTACTACAACC 58.943 52.381 0.00 0.00 0.00 3.77
130 131 1.682323 TCACGCACACTACTACAACCA 59.318 47.619 0.00 0.00 0.00 3.67
131 132 2.058798 CACGCACACTACTACAACCAG 58.941 52.381 0.00 0.00 0.00 4.00
132 133 1.068474 CGCACACTACTACAACCAGC 58.932 55.000 0.00 0.00 0.00 4.85
133 134 1.604438 CGCACACTACTACAACCAGCA 60.604 52.381 0.00 0.00 0.00 4.41
134 135 2.699954 GCACACTACTACAACCAGCAT 58.300 47.619 0.00 0.00 0.00 3.79
135 136 2.673368 GCACACTACTACAACCAGCATC 59.327 50.000 0.00 0.00 0.00 3.91
136 137 3.864540 GCACACTACTACAACCAGCATCA 60.865 47.826 0.00 0.00 0.00 3.07
137 138 3.679980 CACACTACTACAACCAGCATCAC 59.320 47.826 0.00 0.00 0.00 3.06
138 139 3.323691 ACACTACTACAACCAGCATCACA 59.676 43.478 0.00 0.00 0.00 3.58
139 140 4.202315 ACACTACTACAACCAGCATCACAA 60.202 41.667 0.00 0.00 0.00 3.33
140 141 4.754618 CACTACTACAACCAGCATCACAAA 59.245 41.667 0.00 0.00 0.00 2.83
141 142 5.238432 CACTACTACAACCAGCATCACAAAA 59.762 40.000 0.00 0.00 0.00 2.44
142 143 6.003950 ACTACTACAACCAGCATCACAAAAT 58.996 36.000 0.00 0.00 0.00 1.82
143 144 5.125100 ACTACAACCAGCATCACAAAATG 57.875 39.130 0.00 0.00 0.00 2.32
144 145 4.584325 ACTACAACCAGCATCACAAAATGT 59.416 37.500 0.00 0.00 0.00 2.71
145 146 4.405116 ACAACCAGCATCACAAAATGTT 57.595 36.364 0.00 0.00 0.00 2.71
146 147 5.528043 ACAACCAGCATCACAAAATGTTA 57.472 34.783 0.00 0.00 0.00 2.41
147 148 5.288804 ACAACCAGCATCACAAAATGTTAC 58.711 37.500 0.00 0.00 0.00 2.50
148 149 5.163468 ACAACCAGCATCACAAAATGTTACA 60.163 36.000 0.00 0.00 0.00 2.41
149 150 5.528043 ACCAGCATCACAAAATGTTACAA 57.472 34.783 0.00 0.00 0.00 2.41
150 151 5.288804 ACCAGCATCACAAAATGTTACAAC 58.711 37.500 0.00 0.00 0.00 3.32
151 152 4.685628 CCAGCATCACAAAATGTTACAACC 59.314 41.667 0.00 0.00 0.00 3.77
152 153 4.382457 CAGCATCACAAAATGTTACAACCG 59.618 41.667 0.00 0.00 0.00 4.44
153 154 4.277174 AGCATCACAAAATGTTACAACCGA 59.723 37.500 0.00 0.00 0.00 4.69
154 155 4.381566 GCATCACAAAATGTTACAACCGAC 59.618 41.667 0.00 0.00 0.00 4.79
155 156 5.515184 CATCACAAAATGTTACAACCGACA 58.485 37.500 0.00 0.00 0.00 4.35
156 157 5.562506 TCACAAAATGTTACAACCGACAA 57.437 34.783 0.00 0.00 0.00 3.18
157 158 5.333513 TCACAAAATGTTACAACCGACAAC 58.666 37.500 0.00 0.00 0.00 3.32
158 159 5.124138 TCACAAAATGTTACAACCGACAACT 59.876 36.000 0.00 0.00 0.00 3.16
159 160 5.802956 CACAAAATGTTACAACCGACAACTT 59.197 36.000 0.00 0.00 0.00 2.66
160 161 6.020995 CACAAAATGTTACAACCGACAACTTC 60.021 38.462 0.00 0.00 0.00 3.01
168 169 3.159984 CGACAACTTCGGAGCTGC 58.840 61.111 0.00 0.00 44.60 5.25
169 170 2.720758 CGACAACTTCGGAGCTGCG 61.721 63.158 22.84 22.84 44.60 5.18
170 171 1.372997 GACAACTTCGGAGCTGCGA 60.373 57.895 27.32 27.32 0.00 5.10
171 172 0.737715 GACAACTTCGGAGCTGCGAT 60.738 55.000 31.09 16.04 0.00 4.58
172 173 0.530744 ACAACTTCGGAGCTGCGATA 59.469 50.000 31.09 19.42 0.00 2.92
173 174 1.203928 CAACTTCGGAGCTGCGATAG 58.796 55.000 31.09 27.90 0.00 2.08
187 188 1.962412 CGATAGCTCAGCGATGAGAC 58.038 55.000 33.37 22.94 38.68 3.36
188 189 1.724336 CGATAGCTCAGCGATGAGACG 60.724 57.143 33.37 24.64 38.68 4.18
189 190 1.533299 GATAGCTCAGCGATGAGACGA 59.467 52.381 33.37 19.96 38.13 4.20
190 191 1.598882 TAGCTCAGCGATGAGACGAT 58.401 50.000 33.37 17.23 38.13 3.73
191 192 0.743688 AGCTCAGCGATGAGACGATT 59.256 50.000 33.37 10.15 38.13 3.34
192 193 1.135915 AGCTCAGCGATGAGACGATTT 59.864 47.619 33.37 8.42 38.13 2.17
193 194 1.257415 GCTCAGCGATGAGACGATTTG 59.743 52.381 33.37 6.39 38.13 2.32
194 195 2.534298 CTCAGCGATGAGACGATTTGT 58.466 47.619 26.05 0.00 38.13 2.83
195 196 2.262211 TCAGCGATGAGACGATTTGTG 58.738 47.619 0.00 0.00 35.09 3.33
196 197 1.995484 CAGCGATGAGACGATTTGTGT 59.005 47.619 0.00 0.00 35.09 3.72
197 198 2.413112 CAGCGATGAGACGATTTGTGTT 59.587 45.455 0.00 0.00 35.09 3.32
198 199 2.413112 AGCGATGAGACGATTTGTGTTG 59.587 45.455 0.00 0.00 35.09 3.33
199 200 2.474526 GCGATGAGACGATTTGTGTTGG 60.475 50.000 0.00 0.00 35.09 3.77
200 201 2.993220 CGATGAGACGATTTGTGTTGGA 59.007 45.455 0.00 0.00 35.09 3.53
201 202 3.431912 CGATGAGACGATTTGTGTTGGAA 59.568 43.478 0.00 0.00 35.09 3.53
202 203 4.084066 CGATGAGACGATTTGTGTTGGAAA 60.084 41.667 0.00 0.00 35.09 3.13
203 204 6.114570 CGATGAGACGATTTGTGTTGGAAAC 61.115 44.000 0.00 0.00 40.71 2.78
215 216 3.872560 GTTGGAAACGACACTCGAATT 57.127 42.857 0.00 0.00 43.74 2.17
216 217 4.205323 GTTGGAAACGACACTCGAATTT 57.795 40.909 0.00 0.00 43.74 1.82
217 218 3.870723 TGGAAACGACACTCGAATTTG 57.129 42.857 0.00 0.00 43.74 2.32
218 219 2.032377 TGGAAACGACACTCGAATTTGC 60.032 45.455 0.00 0.00 43.74 3.68
219 220 2.223377 GGAAACGACACTCGAATTTGCT 59.777 45.455 0.00 0.00 43.74 3.91
220 221 2.949714 AACGACACTCGAATTTGCTG 57.050 45.000 0.00 0.00 43.74 4.41
221 222 2.148916 ACGACACTCGAATTTGCTGA 57.851 45.000 0.00 0.00 43.74 4.26
222 223 2.479837 ACGACACTCGAATTTGCTGAA 58.520 42.857 0.00 0.00 43.74 3.02
223 224 2.221055 ACGACACTCGAATTTGCTGAAC 59.779 45.455 0.00 0.00 43.74 3.18
224 225 2.220824 CGACACTCGAATTTGCTGAACA 59.779 45.455 0.00 0.00 43.74 3.18
225 226 3.662713 CGACACTCGAATTTGCTGAACAG 60.663 47.826 0.00 0.00 43.74 3.16
226 227 2.549754 ACACTCGAATTTGCTGAACAGG 59.450 45.455 3.99 0.00 0.00 4.00
227 228 2.095567 CACTCGAATTTGCTGAACAGGG 60.096 50.000 3.99 0.00 0.00 4.45
228 229 1.470098 CTCGAATTTGCTGAACAGGGG 59.530 52.381 3.99 0.00 0.00 4.79
229 230 0.109132 CGAATTTGCTGAACAGGGGC 60.109 55.000 3.99 0.00 0.00 5.80
230 231 0.109132 GAATTTGCTGAACAGGGGCG 60.109 55.000 3.99 0.00 0.00 6.13
231 232 0.539438 AATTTGCTGAACAGGGGCGA 60.539 50.000 3.99 0.00 0.00 5.54
232 233 0.962356 ATTTGCTGAACAGGGGCGAG 60.962 55.000 3.99 0.00 0.00 5.03
233 234 4.704833 TGCTGAACAGGGGCGAGC 62.705 66.667 3.99 0.00 0.00 5.03
234 235 4.704833 GCTGAACAGGGGCGAGCA 62.705 66.667 3.99 0.00 0.00 4.26
235 236 2.032528 CTGAACAGGGGCGAGCAA 59.967 61.111 0.00 0.00 0.00 3.91
236 237 2.032528 TGAACAGGGGCGAGCAAG 59.967 61.111 0.00 0.00 0.00 4.01
237 238 2.347490 GAACAGGGGCGAGCAAGA 59.653 61.111 0.00 0.00 0.00 3.02
238 239 1.078143 GAACAGGGGCGAGCAAGAT 60.078 57.895 0.00 0.00 0.00 2.40
239 240 1.372087 GAACAGGGGCGAGCAAGATG 61.372 60.000 0.00 0.00 0.00 2.90
240 241 2.129555 AACAGGGGCGAGCAAGATGT 62.130 55.000 0.00 0.00 0.00 3.06
241 242 1.377725 CAGGGGCGAGCAAGATGTT 60.378 57.895 0.00 0.00 0.00 2.71
242 243 1.377725 AGGGGCGAGCAAGATGTTG 60.378 57.895 0.00 0.00 36.67 3.33
252 253 2.320805 CAAGATGTTGCAACGGTGAG 57.679 50.000 23.79 10.44 0.00 3.51
253 254 1.069022 CAAGATGTTGCAACGGTGAGG 60.069 52.381 23.79 8.58 0.00 3.86
254 255 0.108585 AGATGTTGCAACGGTGAGGT 59.891 50.000 23.79 4.46 0.00 3.85
255 256 0.238289 GATGTTGCAACGGTGAGGTG 59.762 55.000 23.79 0.00 41.52 4.00
260 261 2.029073 CAACGGTGAGGTGCGACT 59.971 61.111 0.00 0.00 0.00 4.18
261 262 2.029073 AACGGTGAGGTGCGACTG 59.971 61.111 0.00 0.00 0.00 3.51
262 263 2.495409 AACGGTGAGGTGCGACTGA 61.495 57.895 0.00 0.00 0.00 3.41
263 264 2.430921 CGGTGAGGTGCGACTGAC 60.431 66.667 0.00 0.00 0.00 3.51
264 265 2.430921 GGTGAGGTGCGACTGACG 60.431 66.667 0.00 0.00 45.66 4.35
265 266 2.430921 GTGAGGTGCGACTGACGG 60.431 66.667 1.32 0.00 42.83 4.79
266 267 3.680786 TGAGGTGCGACTGACGGG 61.681 66.667 1.32 0.00 42.83 5.28
269 270 3.755628 GGTGCGACTGACGGGCTA 61.756 66.667 1.32 0.00 42.83 3.93
270 271 2.506438 GTGCGACTGACGGGCTAC 60.506 66.667 1.32 0.00 42.83 3.58
271 272 2.986979 TGCGACTGACGGGCTACA 60.987 61.111 1.32 0.00 42.83 2.74
272 273 2.348104 TGCGACTGACGGGCTACAT 61.348 57.895 1.32 0.00 42.83 2.29
273 274 1.033202 TGCGACTGACGGGCTACATA 61.033 55.000 1.32 0.00 42.83 2.29
274 275 0.101759 GCGACTGACGGGCTACATAA 59.898 55.000 1.32 0.00 42.83 1.90
275 276 1.269621 GCGACTGACGGGCTACATAAT 60.270 52.381 1.32 0.00 42.83 1.28
276 277 2.662700 CGACTGACGGGCTACATAATC 58.337 52.381 0.00 0.00 38.46 1.75
277 278 2.662700 GACTGACGGGCTACATAATCG 58.337 52.381 0.00 0.00 0.00 3.34
278 279 1.340248 ACTGACGGGCTACATAATCGG 59.660 52.381 0.00 0.00 0.00 4.18
279 280 0.677288 TGACGGGCTACATAATCGGG 59.323 55.000 0.00 0.00 0.00 5.14
280 281 0.669625 GACGGGCTACATAATCGGGC 60.670 60.000 0.00 0.00 0.00 6.13
281 282 1.369692 CGGGCTACATAATCGGGCA 59.630 57.895 0.00 0.00 0.00 5.36
282 283 0.036388 CGGGCTACATAATCGGGCAT 60.036 55.000 0.00 0.00 0.00 4.40
283 284 1.453155 GGGCTACATAATCGGGCATG 58.547 55.000 0.00 0.00 0.00 4.06
284 285 1.453155 GGCTACATAATCGGGCATGG 58.547 55.000 0.00 0.00 0.00 3.66
285 286 1.453155 GCTACATAATCGGGCATGGG 58.547 55.000 0.00 0.00 0.00 4.00
286 287 1.453155 CTACATAATCGGGCATGGGC 58.547 55.000 0.00 0.00 40.13 5.36
287 288 0.321210 TACATAATCGGGCATGGGCG 60.321 55.000 0.00 0.00 42.47 6.13
288 289 2.034066 ATAATCGGGCATGGGCGG 59.966 61.111 0.00 0.00 42.47 6.13
289 290 2.829384 ATAATCGGGCATGGGCGGT 61.829 57.895 0.00 0.00 42.47 5.68
290 291 3.765894 TAATCGGGCATGGGCGGTG 62.766 63.158 0.00 0.00 42.47 4.94
313 314 4.662961 CACGTCGGCAGGCTGTGA 62.663 66.667 17.16 11.75 31.58 3.58
314 315 4.664677 ACGTCGGCAGGCTGTGAC 62.665 66.667 23.51 23.51 0.00 3.67
316 317 4.314440 GTCGGCAGGCTGTGACCA 62.314 66.667 23.13 4.82 0.00 4.02
317 318 3.321648 TCGGCAGGCTGTGACCAT 61.322 61.111 17.16 0.00 0.00 3.55
318 319 2.821366 CGGCAGGCTGTGACCATC 60.821 66.667 17.16 0.00 0.00 3.51
319 320 2.821366 GGCAGGCTGTGACCATCG 60.821 66.667 17.16 0.00 0.00 3.84
320 321 3.503363 GCAGGCTGTGACCATCGC 61.503 66.667 17.16 0.00 0.00 4.58
321 322 2.821366 CAGGCTGTGACCATCGCC 60.821 66.667 6.28 0.00 42.79 5.54
322 323 3.321648 AGGCTGTGACCATCGCCA 61.322 61.111 12.69 0.00 44.85 5.69
323 324 3.127533 GGCTGTGACCATCGCCAC 61.128 66.667 0.00 0.00 42.06 5.01
324 325 3.127533 GCTGTGACCATCGCCACC 61.128 66.667 0.00 0.00 32.61 4.61
325 326 2.815211 CTGTGACCATCGCCACCG 60.815 66.667 0.00 0.00 32.61 4.94
326 327 4.386951 TGTGACCATCGCCACCGG 62.387 66.667 0.00 0.00 34.56 5.28
327 328 4.077184 GTGACCATCGCCACCGGA 62.077 66.667 9.46 0.00 34.56 5.14
328 329 3.770040 TGACCATCGCCACCGGAG 61.770 66.667 9.46 0.00 34.56 4.63
353 354 4.034258 CGCAGGGTGCAGCTGTTG 62.034 66.667 16.64 12.66 45.36 3.33
362 363 2.967397 CAGCTGTTGCATGGGTGG 59.033 61.111 5.25 0.00 42.74 4.61
363 364 1.604308 CAGCTGTTGCATGGGTGGA 60.604 57.895 5.25 0.00 42.74 4.02
364 365 1.153524 AGCTGTTGCATGGGTGGAA 59.846 52.632 0.00 0.00 42.74 3.53
365 366 0.469705 AGCTGTTGCATGGGTGGAAA 60.470 50.000 0.00 0.00 42.74 3.13
366 367 0.319813 GCTGTTGCATGGGTGGAAAC 60.320 55.000 0.00 0.00 37.42 2.78
367 368 0.039256 CTGTTGCATGGGTGGAAACG 60.039 55.000 0.00 0.00 37.42 3.60
368 369 1.288752 GTTGCATGGGTGGAAACGG 59.711 57.895 0.00 0.00 37.42 4.44
369 370 2.569354 TTGCATGGGTGGAAACGGC 61.569 57.895 0.00 0.00 32.35 5.68
370 371 4.114997 GCATGGGTGGAAACGGCG 62.115 66.667 4.80 4.80 0.00 6.46
371 372 2.359354 CATGGGTGGAAACGGCGA 60.359 61.111 16.62 0.00 0.00 5.54
372 373 2.046314 ATGGGTGGAAACGGCGAG 60.046 61.111 16.62 0.00 0.00 5.03
373 374 3.622060 ATGGGTGGAAACGGCGAGG 62.622 63.158 16.62 0.00 0.00 4.63
377 378 4.697756 TGGAAACGGCGAGGGCAG 62.698 66.667 16.62 0.00 42.47 4.85
395 396 4.907034 CGACCGGCGATGAGGACG 62.907 72.222 9.30 0.00 44.57 4.79
399 400 4.907034 CGGCGATGAGGACGGACG 62.907 72.222 0.00 0.00 33.92 4.79
400 401 4.570663 GGCGATGAGGACGGACGG 62.571 72.222 0.00 0.00 0.00 4.79
402 403 4.907034 CGATGAGGACGGACGGCG 62.907 72.222 4.80 4.80 0.00 6.46
403 404 3.515286 GATGAGGACGGACGGCGA 61.515 66.667 16.62 0.00 0.00 5.54
404 405 3.060020 GATGAGGACGGACGGCGAA 62.060 63.158 16.62 0.00 0.00 4.70
405 406 2.938539 GATGAGGACGGACGGCGAAG 62.939 65.000 16.62 6.69 0.00 3.79
406 407 4.493747 GAGGACGGACGGCGAAGG 62.494 72.222 16.62 3.85 0.00 3.46
417 418 4.742201 GCGAAGGCAGCGACCAGA 62.742 66.667 3.17 0.00 39.62 3.86
418 419 2.507992 CGAAGGCAGCGACCAGAG 60.508 66.667 0.69 0.00 0.00 3.35
419 420 2.973899 GAAGGCAGCGACCAGAGA 59.026 61.111 0.69 0.00 0.00 3.10
420 421 1.153667 GAAGGCAGCGACCAGAGAG 60.154 63.158 0.69 0.00 0.00 3.20
421 422 3.308014 AAGGCAGCGACCAGAGAGC 62.308 63.158 0.69 0.00 0.00 4.09
422 423 4.074526 GGCAGCGACCAGAGAGCA 62.075 66.667 0.00 0.00 0.00 4.26
423 424 2.186384 GCAGCGACCAGAGAGCAT 59.814 61.111 0.00 0.00 0.00 3.79
424 425 2.172372 GCAGCGACCAGAGAGCATG 61.172 63.158 0.00 0.00 0.00 4.06
425 426 1.217511 CAGCGACCAGAGAGCATGT 59.782 57.895 0.00 0.00 0.00 3.21
426 427 1.082679 CAGCGACCAGAGAGCATGTG 61.083 60.000 0.00 0.00 0.00 3.21
427 428 2.459442 GCGACCAGAGAGCATGTGC 61.459 63.158 0.00 0.00 42.49 4.57
443 444 2.508439 GCGACCGGCGAGATGAAA 60.508 61.111 20.06 0.00 44.57 2.69
444 445 2.517450 GCGACCGGCGAGATGAAAG 61.517 63.158 20.06 0.00 44.57 2.62
445 446 1.138883 CGACCGGCGAGATGAAAGA 59.861 57.895 9.30 0.00 44.57 2.52
446 447 0.867753 CGACCGGCGAGATGAAAGAG 60.868 60.000 9.30 0.00 44.57 2.85
447 448 0.456221 GACCGGCGAGATGAAAGAGA 59.544 55.000 9.30 0.00 0.00 3.10
448 449 0.457851 ACCGGCGAGATGAAAGAGAG 59.542 55.000 9.30 0.00 0.00 3.20
449 450 0.873743 CCGGCGAGATGAAAGAGAGC 60.874 60.000 9.30 0.00 0.00 4.09
450 451 1.205485 CGGCGAGATGAAAGAGAGCG 61.205 60.000 0.00 0.00 0.00 5.03
451 452 0.101399 GGCGAGATGAAAGAGAGCGA 59.899 55.000 0.00 0.00 0.00 4.93
452 453 1.476074 GCGAGATGAAAGAGAGCGAG 58.524 55.000 0.00 0.00 0.00 5.03
453 454 1.064803 GCGAGATGAAAGAGAGCGAGA 59.935 52.381 0.00 0.00 0.00 4.04
454 455 2.478709 GCGAGATGAAAGAGAGCGAGAA 60.479 50.000 0.00 0.00 0.00 2.87
455 456 3.362295 CGAGATGAAAGAGAGCGAGAAG 58.638 50.000 0.00 0.00 0.00 2.85
456 457 3.064682 CGAGATGAAAGAGAGCGAGAAGA 59.935 47.826 0.00 0.00 0.00 2.87
457 458 4.261155 CGAGATGAAAGAGAGCGAGAAGAT 60.261 45.833 0.00 0.00 0.00 2.40
458 459 4.935702 AGATGAAAGAGAGCGAGAAGATG 58.064 43.478 0.00 0.00 0.00 2.90
459 460 2.886081 TGAAAGAGAGCGAGAAGATGC 58.114 47.619 0.00 0.00 0.00 3.91
460 461 2.232208 TGAAAGAGAGCGAGAAGATGCA 59.768 45.455 0.00 0.00 0.00 3.96
461 462 2.582728 AAGAGAGCGAGAAGATGCAG 57.417 50.000 0.00 0.00 0.00 4.41
462 463 0.746063 AGAGAGCGAGAAGATGCAGG 59.254 55.000 0.00 0.00 0.00 4.85
463 464 0.743688 GAGAGCGAGAAGATGCAGGA 59.256 55.000 0.00 0.00 0.00 3.86
464 465 1.135915 GAGAGCGAGAAGATGCAGGAA 59.864 52.381 0.00 0.00 0.00 3.36
465 466 1.552337 AGAGCGAGAAGATGCAGGAAA 59.448 47.619 0.00 0.00 0.00 3.13
466 467 2.170187 AGAGCGAGAAGATGCAGGAAAT 59.830 45.455 0.00 0.00 0.00 2.17
467 468 2.543430 GAGCGAGAAGATGCAGGAAATC 59.457 50.000 0.00 0.00 0.00 2.17
468 469 1.601430 GCGAGAAGATGCAGGAAATCC 59.399 52.381 0.00 0.00 0.00 3.01
470 471 3.539604 CGAGAAGATGCAGGAAATCCTT 58.460 45.455 0.00 0.00 46.09 3.36
471 472 3.944015 CGAGAAGATGCAGGAAATCCTTT 59.056 43.478 0.00 0.00 46.09 3.11
472 473 4.201891 CGAGAAGATGCAGGAAATCCTTTG 60.202 45.833 0.00 0.00 46.09 2.77
473 474 4.670765 AGAAGATGCAGGAAATCCTTTGT 58.329 39.130 0.00 0.00 46.09 2.83
474 475 5.819991 AGAAGATGCAGGAAATCCTTTGTA 58.180 37.500 0.00 0.00 46.09 2.41
475 476 6.430007 AGAAGATGCAGGAAATCCTTTGTAT 58.570 36.000 0.00 0.00 46.09 2.29
476 477 6.320672 AGAAGATGCAGGAAATCCTTTGTATG 59.679 38.462 0.00 0.00 46.09 2.39
477 478 5.513233 AGATGCAGGAAATCCTTTGTATGT 58.487 37.500 0.00 0.00 46.09 2.29
478 479 5.359009 AGATGCAGGAAATCCTTTGTATGTG 59.641 40.000 0.00 0.00 46.09 3.21
479 480 4.406456 TGCAGGAAATCCTTTGTATGTGT 58.594 39.130 0.00 0.00 46.09 3.72
480 481 4.832266 TGCAGGAAATCCTTTGTATGTGTT 59.168 37.500 0.00 0.00 46.09 3.32
481 482 5.163513 GCAGGAAATCCTTTGTATGTGTTG 58.836 41.667 0.00 0.00 46.09 3.33
482 483 5.048083 GCAGGAAATCCTTTGTATGTGTTGA 60.048 40.000 0.00 0.00 46.09 3.18
483 484 6.381801 CAGGAAATCCTTTGTATGTGTTGAC 58.618 40.000 0.00 0.00 46.09 3.18
484 485 6.016360 CAGGAAATCCTTTGTATGTGTTGACA 60.016 38.462 0.00 0.00 46.09 3.58
485 486 6.549364 AGGAAATCCTTTGTATGTGTTGACAA 59.451 34.615 0.00 0.00 46.09 3.18
486 487 7.069331 AGGAAATCCTTTGTATGTGTTGACAAA 59.931 33.333 0.00 0.00 46.09 2.83
497 498 3.066621 TGTGTTGACAAAGGAAGATGCAC 59.933 43.478 0.00 0.00 0.00 4.57
506 507 4.487714 AAGGAAGATGCACGAAATCCTA 57.512 40.909 8.31 0.00 36.31 2.94
508 509 2.540101 GGAAGATGCACGAAATCCTACG 59.460 50.000 0.00 0.00 0.00 3.51
514 515 3.898380 ACGAAATCCTACGTGTGCA 57.102 47.368 0.00 0.00 41.17 4.57
516 517 1.999735 ACGAAATCCTACGTGTGCATG 59.000 47.619 0.00 0.00 41.17 4.06
532 533 2.094338 TGCATGTGTTGACAAAGTGCAA 60.094 40.909 13.42 0.00 37.05 4.08
533 534 2.282290 GCATGTGTTGACAAAGTGCAAC 59.718 45.455 0.00 0.00 43.45 4.17
534 535 2.254918 TGTGTTGACAAAGTGCAACG 57.745 45.000 0.00 0.00 45.47 4.10
535 536 0.913876 GTGTTGACAAAGTGCAACGC 59.086 50.000 0.00 0.00 45.47 4.84
536 537 0.523519 TGTTGACAAAGTGCAACGCA 59.476 45.000 0.00 0.00 45.47 5.24
545 546 3.809423 TGCAACGCACGGTTACAA 58.191 50.000 0.00 0.00 36.49 2.41
546 547 2.095750 TGCAACGCACGGTTACAAA 58.904 47.368 0.00 0.00 36.49 2.83
547 548 0.248134 TGCAACGCACGGTTACAAAC 60.248 50.000 0.00 0.00 36.49 2.93
551 552 3.282428 CAACGCACGGTTACAAACTTAC 58.718 45.455 0.00 0.00 36.49 2.34
553 554 2.935201 ACGCACGGTTACAAACTTACAA 59.065 40.909 0.00 0.00 0.00 2.41
558 559 6.301861 GCACGGTTACAAACTTACAATAGAC 58.698 40.000 0.00 0.00 0.00 2.59
559 560 6.146673 GCACGGTTACAAACTTACAATAGACT 59.853 38.462 0.00 0.00 0.00 3.24
571 572 6.929606 ACTTACAATAGACTAAATCGGATGGC 59.070 38.462 0.00 0.00 0.00 4.40
573 574 5.300752 ACAATAGACTAAATCGGATGGCTG 58.699 41.667 0.00 0.00 0.00 4.85
617 619 2.412112 GTCGACCGGCGCTTATCT 59.588 61.111 7.64 0.00 40.61 1.98
670 690 2.048503 CGTCCCTGACACGGTTCC 60.049 66.667 0.00 0.00 33.46 3.62
710 730 1.699730 GCCCGGCCCACTATTTTATT 58.300 50.000 0.00 0.00 0.00 1.40
720 740 3.375922 CCACTATTTTATTCCGCCGTGTT 59.624 43.478 0.00 0.00 0.00 3.32
749 769 0.673022 GCTGGTGTCTTCTGCTCCAG 60.673 60.000 8.52 8.52 45.35 3.86
841 875 1.197721 CAGTTAGCTTGCGGTTCTTGG 59.802 52.381 0.00 0.00 0.00 3.61
893 942 1.660917 GACCATCGATCGGGAGGAC 59.339 63.158 22.21 14.97 0.00 3.85
915 964 1.926511 AACCGTCGATCGCCGTTACT 61.927 55.000 17.85 0.00 39.75 2.24
916 965 1.089481 ACCGTCGATCGCCGTTACTA 61.089 55.000 17.85 0.00 39.75 1.82
917 966 0.655626 CCGTCGATCGCCGTTACTAC 60.656 60.000 17.85 3.59 39.75 2.73
921 979 3.477122 GTCGATCGCCGTTACTACTATG 58.523 50.000 11.09 0.00 39.75 2.23
936 1000 4.811024 ACTACTATGCAACCATCGATGTTG 59.189 41.667 23.27 23.90 32.85 3.33
949 1024 2.168521 TCGATGTTGCCTAGCTTAGCTT 59.831 45.455 13.44 0.00 40.44 3.74
956 1031 2.223829 TGCCTAGCTTAGCTTGATCGTC 60.224 50.000 13.44 0.00 40.44 4.20
957 1032 2.864489 GCCTAGCTTAGCTTGATCGTCC 60.864 54.545 13.44 0.00 40.44 4.79
1134 1216 4.075793 AGCTCCGTCCCCAGGCTA 62.076 66.667 0.00 0.00 0.00 3.93
1301 1407 2.159841 CGTGCGATTCATTCAGTTCGTT 60.160 45.455 0.00 0.00 34.24 3.85
1307 1415 6.522855 TGCGATTCATTCAGTTCGTTTAATTG 59.477 34.615 0.00 0.00 34.24 2.32
1308 1416 6.504799 GCGATTCATTCAGTTCGTTTAATTGC 60.505 38.462 0.00 0.00 34.24 3.56
1312 1470 3.822594 TCAGTTCGTTTAATTGCGCAT 57.177 38.095 12.75 0.00 0.00 4.73
1325 1483 3.781079 TTGCGCATAAAGATTTGGGAG 57.219 42.857 12.75 0.00 0.00 4.30
1329 1487 4.402155 TGCGCATAAAGATTTGGGAGAATT 59.598 37.500 5.66 0.00 0.00 2.17
1347 1521 7.283127 GGGAGAATTTACTGAATTACTCATGCA 59.717 37.037 0.00 0.00 38.06 3.96
1489 1703 1.224592 CGCAGAAGCCCAAGGGTAT 59.775 57.895 7.05 0.00 37.52 2.73
1546 1778 1.377612 GTAAGGCCCTTTCCACGGT 59.622 57.895 0.00 0.00 0.00 4.83
1667 1900 3.272334 GCTGCGGCATTCTACGGG 61.272 66.667 14.08 0.00 38.54 5.28
1736 1972 1.801913 CGGCGACTACAGCTGTGTC 60.802 63.158 29.57 27.57 38.19 3.67
1859 2126 2.045045 TGGGCAAAGGCGGAGATG 60.045 61.111 0.00 0.00 42.47 2.90
1860 2127 2.830370 GGGCAAAGGCGGAGATGG 60.830 66.667 0.00 0.00 42.47 3.51
1861 2128 2.272146 GGCAAAGGCGGAGATGGA 59.728 61.111 0.00 0.00 42.47 3.41
1862 2129 1.821332 GGCAAAGGCGGAGATGGAG 60.821 63.158 0.00 0.00 42.47 3.86
1863 2130 2.476320 GCAAAGGCGGAGATGGAGC 61.476 63.158 0.00 0.00 0.00 4.70
1864 2131 2.176273 CAAAGGCGGAGATGGAGCG 61.176 63.158 0.00 0.00 0.00 5.03
1865 2132 3.391665 AAAGGCGGAGATGGAGCGG 62.392 63.158 0.00 0.00 0.00 5.52
1868 2135 4.838152 GCGGAGATGGAGCGGCAA 62.838 66.667 1.45 0.00 0.00 4.52
1869 2136 2.892425 CGGAGATGGAGCGGCAAC 60.892 66.667 1.45 0.00 0.00 4.17
1870 2137 2.268920 GGAGATGGAGCGGCAACA 59.731 61.111 1.45 0.16 0.00 3.33
1871 2138 2.109126 GGAGATGGAGCGGCAACAC 61.109 63.158 1.45 0.00 0.00 3.32
1872 2139 2.434884 AGATGGAGCGGCAACACG 60.435 61.111 1.45 0.00 0.00 4.49
1873 2140 2.434185 GATGGAGCGGCAACACGA 60.434 61.111 1.45 0.00 35.47 4.35
1874 2141 2.740714 GATGGAGCGGCAACACGAC 61.741 63.158 1.45 0.00 35.47 4.34
1875 2142 4.980805 TGGAGCGGCAACACGACC 62.981 66.667 1.45 0.00 35.47 4.79
1876 2143 4.980805 GGAGCGGCAACACGACCA 62.981 66.667 1.45 0.00 35.47 4.02
1877 2144 2.970324 GAGCGGCAACACGACCAA 60.970 61.111 1.45 0.00 35.47 3.67
1878 2145 3.236618 GAGCGGCAACACGACCAAC 62.237 63.158 1.45 0.00 35.47 3.77
1879 2146 3.276846 GCGGCAACACGACCAACT 61.277 61.111 0.00 0.00 35.47 3.16
1880 2147 2.631428 CGGCAACACGACCAACTG 59.369 61.111 0.00 0.00 35.47 3.16
1881 2148 2.331451 GGCAACACGACCAACTGC 59.669 61.111 0.00 0.00 0.00 4.40
1882 2149 2.186826 GGCAACACGACCAACTGCT 61.187 57.895 0.00 0.00 33.49 4.24
2020 2341 7.855545 AGATAAGTGTCACATCATAAATTCGC 58.144 34.615 5.62 0.00 0.00 4.70
2059 2380 4.521075 TGCTTCATCTAGCACGCC 57.479 55.556 0.00 0.00 45.72 5.68
2063 2384 0.924090 CTTCATCTAGCACGCCGAAC 59.076 55.000 0.00 0.00 0.00 3.95
2085 2407 3.619483 CAGTTTACAAGACGGACACAACA 59.381 43.478 0.00 0.00 0.00 3.33
2118 2440 9.767684 CTTTCACGTGATTGTATTTTATTAGCA 57.232 29.630 20.80 0.00 0.00 3.49
2182 3072 0.604511 ATCGAACAACCCGGGTGAAC 60.605 55.000 31.05 17.76 0.00 3.18
2184 3074 0.816421 CGAACAACCCGGGTGAACTT 60.816 55.000 31.05 15.91 0.00 2.66
2202 3097 3.222603 ACTTGTTCAACATCTTGACCCC 58.777 45.455 0.00 0.00 36.06 4.95
2203 3098 2.286365 TGTTCAACATCTTGACCCCC 57.714 50.000 0.00 0.00 36.06 5.40
2204 3099 1.780309 TGTTCAACATCTTGACCCCCT 59.220 47.619 0.00 0.00 36.06 4.79
2206 3101 2.558359 GTTCAACATCTTGACCCCCTTG 59.442 50.000 0.00 0.00 36.06 3.61
2207 3102 1.075374 TCAACATCTTGACCCCCTTGG 59.925 52.381 0.00 0.00 41.37 3.61
2216 3111 4.397348 CCCCCTTGGTCACTTTCG 57.603 61.111 0.00 0.00 0.00 3.46
2221 3116 0.821711 CCTTGGTCACTTTCGGGCAA 60.822 55.000 0.00 0.00 0.00 4.52
2226 3121 2.252260 CACTTTCGGGCAAGTGCG 59.748 61.111 9.24 0.00 45.43 5.34
2234 3129 3.670377 GGCAAGTGCGTGGGTTCC 61.670 66.667 0.00 0.00 43.26 3.62
2252 3147 5.182380 GGGTTCCGTCAAGATTTACATTTCA 59.818 40.000 0.00 0.00 0.00 2.69
2322 3220 9.729023 TGTTTAGAATACAAACAGAACATTGTG 57.271 29.630 1.66 0.00 40.12 3.33
2342 3240 4.022242 TGTGTGCTACTCCTTCTGTTCTAC 60.022 45.833 0.00 0.00 0.00 2.59
2343 3241 4.218852 GTGTGCTACTCCTTCTGTTCTACT 59.781 45.833 0.00 0.00 0.00 2.57
2344 3242 5.415077 GTGTGCTACTCCTTCTGTTCTACTA 59.585 44.000 0.00 0.00 0.00 1.82
2389 3287 9.857957 ATTTTCAAAAATCAAACAGTGCAAAAT 57.142 22.222 0.00 0.00 33.54 1.82
2474 3372 9.900710 AAAGTATGTCTCGAGATGTAATGATAC 57.099 33.333 19.90 14.40 0.00 2.24
2475 3373 8.046294 AGTATGTCTCGAGATGTAATGATACC 57.954 38.462 19.90 1.20 0.00 2.73
2570 3469 7.658179 AATATGCAGACTATATTGTGGAACG 57.342 36.000 0.00 0.00 42.39 3.95
2597 3496 7.112779 AGGGAGTACATAAATCTTGTGGAAAG 58.887 38.462 0.00 0.00 0.00 2.62
2605 3504 8.482128 ACATAAATCTTGTGGAAAGGTTTTTCA 58.518 29.630 1.98 0.00 43.62 2.69
2608 3507 5.275067 TCTTGTGGAAAGGTTTTTCATGG 57.725 39.130 0.00 0.00 43.62 3.66
2622 3521 7.279758 AGGTTTTTCATGGTTTTGTGTTATGTG 59.720 33.333 0.00 0.00 0.00 3.21
2623 3522 7.065204 GGTTTTTCATGGTTTTGTGTTATGTGT 59.935 33.333 0.00 0.00 0.00 3.72
2647 3546 9.679661 TGTGCTCTCAAATCCAAGTAATTATTA 57.320 29.630 0.00 0.00 0.00 0.98
2732 3631 2.228103 GGTTTCGGGAATCAAGTCCAAC 59.772 50.000 0.00 0.00 39.70 3.77
2743 3642 6.405176 GGAATCAAGTCCAACCATCATTCTTC 60.405 42.308 0.00 0.00 37.65 2.87
2785 3684 5.525378 GGCAGTGTTCTATATCCAAGTCAAG 59.475 44.000 0.00 0.00 0.00 3.02
2836 3736 3.815809 TCCTTCCTTTGTAACCACACAG 58.184 45.455 0.00 0.00 33.30 3.66
2842 3742 3.434637 CTTTGTAACCACACAGCAACAC 58.565 45.455 0.00 0.00 33.30 3.32
2892 3792 6.840780 ACCTGCAATAAAACTTTAGAGCAT 57.159 33.333 10.11 0.00 36.47 3.79
2893 3793 7.938140 ACCTGCAATAAAACTTTAGAGCATA 57.062 32.000 10.11 0.00 36.47 3.14
2894 3794 7.989826 ACCTGCAATAAAACTTTAGAGCATAG 58.010 34.615 10.11 8.38 36.47 2.23
2895 3795 7.611855 ACCTGCAATAAAACTTTAGAGCATAGT 59.388 33.333 10.11 8.79 36.47 2.12
2896 3796 8.462016 CCTGCAATAAAACTTTAGAGCATAGTT 58.538 33.333 10.11 0.00 36.47 2.24
2897 3797 9.846248 CTGCAATAAAACTTTAGAGCATAGTTT 57.154 29.630 10.11 0.00 42.24 2.66
2898 3798 9.624697 TGCAATAAAACTTTAGAGCATAGTTTG 57.375 29.630 0.00 0.00 40.24 2.93
2899 3799 9.076596 GCAATAAAACTTTAGAGCATAGTTTGG 57.923 33.333 0.00 0.00 40.24 3.28
2900 3800 9.573133 CAATAAAACTTTAGAGCATAGTTTGGG 57.427 33.333 0.00 0.00 40.24 4.12
2901 3801 9.528489 AATAAAACTTTAGAGCATAGTTTGGGA 57.472 29.630 0.00 0.00 40.24 4.37
2902 3802 7.833285 AAAACTTTAGAGCATAGTTTGGGAA 57.167 32.000 0.00 0.00 40.24 3.97
2903 3803 8.422577 AAAACTTTAGAGCATAGTTTGGGAAT 57.577 30.769 0.00 0.00 40.24 3.01
2904 3804 8.422577 AAACTTTAGAGCATAGTTTGGGAATT 57.577 30.769 0.00 0.00 39.79 2.17
2936 3836 6.757947 CACAATATTGTCCATCCCACAAATTC 59.242 38.462 18.25 0.00 39.91 2.17
2937 3837 6.440010 ACAATATTGTCCATCCCACAAATTCA 59.560 34.615 15.47 0.00 36.50 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.982651 GGTTGTAGCATGTAGAAATATCTCTTA 57.017 33.333 0.00 0.00 37.10 2.10
8 9 7.653713 CGGTTGTAGCATGTAGAAATATCTCTT 59.346 37.037 0.00 0.00 37.10 2.85
9 10 7.014326 TCGGTTGTAGCATGTAGAAATATCTCT 59.986 37.037 0.00 0.00 37.10 3.10
10 11 7.145985 TCGGTTGTAGCATGTAGAAATATCTC 58.854 38.462 0.00 0.00 37.10 2.75
11 12 7.050970 TCGGTTGTAGCATGTAGAAATATCT 57.949 36.000 0.00 0.00 39.82 1.98
12 13 7.385205 ACATCGGTTGTAGCATGTAGAAATATC 59.615 37.037 0.00 0.00 36.57 1.63
13 14 7.217200 ACATCGGTTGTAGCATGTAGAAATAT 58.783 34.615 0.00 0.00 36.57 1.28
14 15 6.578944 ACATCGGTTGTAGCATGTAGAAATA 58.421 36.000 0.00 0.00 36.57 1.40
15 16 5.428253 ACATCGGTTGTAGCATGTAGAAAT 58.572 37.500 0.00 0.00 36.57 2.17
16 17 4.827692 ACATCGGTTGTAGCATGTAGAAA 58.172 39.130 0.00 0.00 36.57 2.52
17 18 4.430007 GACATCGGTTGTAGCATGTAGAA 58.570 43.478 0.00 0.00 39.18 2.10
18 19 3.181479 GGACATCGGTTGTAGCATGTAGA 60.181 47.826 0.00 0.00 39.18 2.59
19 20 3.123804 GGACATCGGTTGTAGCATGTAG 58.876 50.000 0.00 0.00 39.18 2.74
20 21 2.159014 GGGACATCGGTTGTAGCATGTA 60.159 50.000 0.00 0.00 39.18 2.29
21 22 1.406887 GGGACATCGGTTGTAGCATGT 60.407 52.381 0.00 0.00 39.18 3.21
22 23 1.299541 GGGACATCGGTTGTAGCATG 58.700 55.000 0.00 0.00 39.18 4.06
23 24 0.908910 TGGGACATCGGTTGTAGCAT 59.091 50.000 0.00 0.00 39.18 3.79
24 25 2.367529 TGGGACATCGGTTGTAGCA 58.632 52.632 0.00 0.00 39.18 3.49
37 38 0.600255 CGATTGTAGCCGGATGGGAC 60.600 60.000 5.05 0.00 38.47 4.46
38 39 1.745890 CGATTGTAGCCGGATGGGA 59.254 57.895 5.05 0.00 38.47 4.37
39 40 4.361253 CGATTGTAGCCGGATGGG 57.639 61.111 5.05 0.00 39.58 4.00
45 46 3.688136 CGACACCGATTGTAGCCG 58.312 61.111 0.00 0.00 39.17 5.52
48 49 1.065358 AAACGCGACACCGATTGTAG 58.935 50.000 15.93 0.00 39.17 2.74
49 50 1.192757 CAAAACGCGACACCGATTGTA 59.807 47.619 15.93 0.00 39.17 2.41
50 51 0.041663 CAAAACGCGACACCGATTGT 60.042 50.000 15.93 0.00 43.10 2.71
51 52 1.327292 GCAAAACGCGACACCGATTG 61.327 55.000 15.93 7.89 38.22 2.67
52 53 1.082366 GCAAAACGCGACACCGATT 60.082 52.632 15.93 0.00 38.22 3.34
53 54 2.554272 GCAAAACGCGACACCGAT 59.446 55.556 15.93 0.00 38.22 4.18
68 69 1.770957 GATGATCGTGCGATGTAGCA 58.229 50.000 12.03 4.19 45.96 3.49
69 70 0.705094 CGATGATCGTGCGATGTAGC 59.295 55.000 12.03 3.19 34.72 3.58
70 71 0.705094 GCGATGATCGTGCGATGTAG 59.295 55.000 16.83 2.77 42.81 2.74
71 72 0.030101 TGCGATGATCGTGCGATGTA 59.970 50.000 16.83 1.58 42.81 2.29
72 73 0.598419 ATGCGATGATCGTGCGATGT 60.598 50.000 16.83 0.57 42.81 3.06
73 74 0.509929 AATGCGATGATCGTGCGATG 59.490 50.000 16.83 0.00 42.81 3.84
74 75 1.220529 AAATGCGATGATCGTGCGAT 58.779 45.000 16.83 6.80 42.81 4.58
75 76 1.005032 GAAAATGCGATGATCGTGCGA 60.005 47.619 16.83 0.00 42.81 5.10
76 77 1.379299 GAAAATGCGATGATCGTGCG 58.621 50.000 16.83 0.00 42.81 5.34
77 78 1.063912 TGGAAAATGCGATGATCGTGC 59.936 47.619 16.83 1.85 42.81 5.34
78 79 2.352651 ACTGGAAAATGCGATGATCGTG 59.647 45.455 16.83 0.00 42.81 4.35
79 80 2.632377 ACTGGAAAATGCGATGATCGT 58.368 42.857 16.83 0.00 42.81 3.73
80 81 3.555547 TGTACTGGAAAATGCGATGATCG 59.444 43.478 11.02 11.02 43.89 3.69
81 82 5.484173 TTGTACTGGAAAATGCGATGATC 57.516 39.130 0.00 0.00 0.00 2.92
82 83 5.277490 CGATTGTACTGGAAAATGCGATGAT 60.277 40.000 0.00 0.00 0.00 2.45
83 84 4.033932 CGATTGTACTGGAAAATGCGATGA 59.966 41.667 0.00 0.00 0.00 2.92
84 85 4.274069 CGATTGTACTGGAAAATGCGATG 58.726 43.478 0.00 0.00 0.00 3.84
85 86 3.312421 CCGATTGTACTGGAAAATGCGAT 59.688 43.478 0.00 0.00 0.00 4.58
86 87 2.675844 CCGATTGTACTGGAAAATGCGA 59.324 45.455 0.00 0.00 0.00 5.10
87 88 2.791158 GCCGATTGTACTGGAAAATGCG 60.791 50.000 0.00 0.00 0.00 4.73
88 89 2.791158 CGCCGATTGTACTGGAAAATGC 60.791 50.000 0.00 0.00 0.00 3.56
89 90 2.418628 ACGCCGATTGTACTGGAAAATG 59.581 45.455 0.00 0.00 0.00 2.32
90 91 2.676342 GACGCCGATTGTACTGGAAAAT 59.324 45.455 0.00 0.00 0.00 1.82
91 92 2.070783 GACGCCGATTGTACTGGAAAA 58.929 47.619 0.00 0.00 0.00 2.29
92 93 1.001068 TGACGCCGATTGTACTGGAAA 59.999 47.619 0.00 0.00 0.00 3.13
93 94 0.604073 TGACGCCGATTGTACTGGAA 59.396 50.000 0.00 0.00 0.00 3.53
94 95 0.108992 GTGACGCCGATTGTACTGGA 60.109 55.000 0.00 0.00 0.00 3.86
95 96 1.410737 CGTGACGCCGATTGTACTGG 61.411 60.000 0.00 0.00 0.00 4.00
96 97 1.988409 CGTGACGCCGATTGTACTG 59.012 57.895 0.00 0.00 0.00 2.74
97 98 4.470876 CGTGACGCCGATTGTACT 57.529 55.556 0.00 0.00 0.00 2.73
108 109 1.712350 GTTGTAGTAGTGTGCGTGACG 59.288 52.381 0.00 0.00 0.00 4.35
109 110 2.056577 GGTTGTAGTAGTGTGCGTGAC 58.943 52.381 0.00 0.00 0.00 3.67
110 111 1.682323 TGGTTGTAGTAGTGTGCGTGA 59.318 47.619 0.00 0.00 0.00 4.35
111 112 2.058798 CTGGTTGTAGTAGTGTGCGTG 58.941 52.381 0.00 0.00 0.00 5.34
112 113 1.604693 GCTGGTTGTAGTAGTGTGCGT 60.605 52.381 0.00 0.00 0.00 5.24
113 114 1.068474 GCTGGTTGTAGTAGTGTGCG 58.932 55.000 0.00 0.00 0.00 5.34
114 115 2.163818 TGCTGGTTGTAGTAGTGTGC 57.836 50.000 0.00 0.00 0.00 4.57
115 116 3.679980 GTGATGCTGGTTGTAGTAGTGTG 59.320 47.826 0.00 0.00 0.00 3.82
116 117 3.323691 TGTGATGCTGGTTGTAGTAGTGT 59.676 43.478 0.00 0.00 0.00 3.55
117 118 3.925379 TGTGATGCTGGTTGTAGTAGTG 58.075 45.455 0.00 0.00 0.00 2.74
118 119 4.617253 TTGTGATGCTGGTTGTAGTAGT 57.383 40.909 0.00 0.00 0.00 2.73
119 120 5.940192 TTTTGTGATGCTGGTTGTAGTAG 57.060 39.130 0.00 0.00 0.00 2.57
120 121 5.767665 ACATTTTGTGATGCTGGTTGTAGTA 59.232 36.000 0.00 0.00 0.00 1.82
121 122 4.584325 ACATTTTGTGATGCTGGTTGTAGT 59.416 37.500 0.00 0.00 0.00 2.73
122 123 5.125100 ACATTTTGTGATGCTGGTTGTAG 57.875 39.130 0.00 0.00 0.00 2.74
123 124 5.528043 AACATTTTGTGATGCTGGTTGTA 57.472 34.783 0.00 0.00 0.00 2.41
124 125 4.405116 AACATTTTGTGATGCTGGTTGT 57.595 36.364 0.00 0.00 0.00 3.32
125 126 5.288015 TGTAACATTTTGTGATGCTGGTTG 58.712 37.500 0.00 0.00 0.00 3.77
126 127 5.528043 TGTAACATTTTGTGATGCTGGTT 57.472 34.783 0.00 0.00 0.00 3.67
127 128 5.288804 GTTGTAACATTTTGTGATGCTGGT 58.711 37.500 0.00 0.00 0.00 4.00
128 129 4.685628 GGTTGTAACATTTTGTGATGCTGG 59.314 41.667 0.00 0.00 0.00 4.85
129 130 4.382457 CGGTTGTAACATTTTGTGATGCTG 59.618 41.667 0.00 0.00 0.00 4.41
130 131 4.277174 TCGGTTGTAACATTTTGTGATGCT 59.723 37.500 0.00 0.00 0.00 3.79
131 132 4.381566 GTCGGTTGTAACATTTTGTGATGC 59.618 41.667 0.00 0.00 0.00 3.91
132 133 5.515184 TGTCGGTTGTAACATTTTGTGATG 58.485 37.500 0.00 0.00 0.00 3.07
133 134 5.759506 TGTCGGTTGTAACATTTTGTGAT 57.240 34.783 0.00 0.00 0.00 3.06
134 135 5.124138 AGTTGTCGGTTGTAACATTTTGTGA 59.876 36.000 0.00 0.00 0.00 3.58
135 136 5.336744 AGTTGTCGGTTGTAACATTTTGTG 58.663 37.500 0.00 0.00 0.00 3.33
136 137 5.570234 AGTTGTCGGTTGTAACATTTTGT 57.430 34.783 0.00 0.00 0.00 2.83
137 138 5.170625 CGAAGTTGTCGGTTGTAACATTTTG 59.829 40.000 0.00 0.00 46.45 2.44
138 139 5.267776 CGAAGTTGTCGGTTGTAACATTTT 58.732 37.500 0.00 0.00 46.45 1.82
139 140 4.839796 CGAAGTTGTCGGTTGTAACATTT 58.160 39.130 0.00 0.00 46.45 2.32
140 141 4.461992 CGAAGTTGTCGGTTGTAACATT 57.538 40.909 0.00 0.00 46.45 2.71
152 153 0.737715 ATCGCAGCTCCGAAGTTGTC 60.738 55.000 2.67 0.00 41.01 3.18
153 154 0.530744 TATCGCAGCTCCGAAGTTGT 59.469 50.000 2.67 0.00 41.01 3.32
154 155 1.203928 CTATCGCAGCTCCGAAGTTG 58.796 55.000 2.67 0.00 41.01 3.16
155 156 3.650409 CTATCGCAGCTCCGAAGTT 57.350 52.632 2.67 0.00 41.01 2.66
165 166 0.039708 TCATCGCTGAGCTATCGCAG 60.040 55.000 1.78 0.00 42.12 5.18
166 167 0.039708 CTCATCGCTGAGCTATCGCA 60.040 55.000 2.91 0.00 42.36 5.10
167 168 2.723163 CTCATCGCTGAGCTATCGC 58.277 57.895 2.91 0.00 42.36 4.58
175 176 2.262211 CACAAATCGTCTCATCGCTGA 58.738 47.619 0.00 0.00 0.00 4.26
176 177 1.995484 ACACAAATCGTCTCATCGCTG 59.005 47.619 0.00 0.00 0.00 5.18
177 178 2.370281 ACACAAATCGTCTCATCGCT 57.630 45.000 0.00 0.00 0.00 4.93
178 179 2.474526 CCAACACAAATCGTCTCATCGC 60.475 50.000 0.00 0.00 0.00 4.58
179 180 2.993220 TCCAACACAAATCGTCTCATCG 59.007 45.455 0.00 0.00 0.00 3.84
180 181 5.147162 GTTTCCAACACAAATCGTCTCATC 58.853 41.667 0.00 0.00 0.00 2.92
181 182 4.319477 CGTTTCCAACACAAATCGTCTCAT 60.319 41.667 0.00 0.00 0.00 2.90
182 183 3.001838 CGTTTCCAACACAAATCGTCTCA 59.998 43.478 0.00 0.00 0.00 3.27
183 184 3.246699 TCGTTTCCAACACAAATCGTCTC 59.753 43.478 0.00 0.00 0.00 3.36
184 185 3.001939 GTCGTTTCCAACACAAATCGTCT 59.998 43.478 0.00 0.00 0.00 4.18
185 186 3.242478 TGTCGTTTCCAACACAAATCGTC 60.242 43.478 0.00 0.00 0.00 4.20
186 187 2.678836 TGTCGTTTCCAACACAAATCGT 59.321 40.909 0.00 0.00 0.00 3.73
187 188 3.033185 GTGTCGTTTCCAACACAAATCG 58.967 45.455 1.01 0.00 44.10 3.34
188 189 4.279659 GAGTGTCGTTTCCAACACAAATC 58.720 43.478 8.20 0.00 46.47 2.17
189 190 3.242608 CGAGTGTCGTTTCCAACACAAAT 60.243 43.478 8.20 0.00 46.47 2.32
190 191 2.094575 CGAGTGTCGTTTCCAACACAAA 59.905 45.455 8.20 0.00 46.47 2.83
191 192 1.661617 CGAGTGTCGTTTCCAACACAA 59.338 47.619 8.20 0.00 46.47 3.33
192 193 1.135053 TCGAGTGTCGTTTCCAACACA 60.135 47.619 8.20 0.00 46.47 3.72
193 194 1.563111 TCGAGTGTCGTTTCCAACAC 58.437 50.000 0.00 0.00 44.83 3.32
194 195 2.296831 TTCGAGTGTCGTTTCCAACA 57.703 45.000 0.00 0.00 41.35 3.33
195 196 3.872560 AATTCGAGTGTCGTTTCCAAC 57.127 42.857 0.00 0.00 41.35 3.77
196 197 3.547214 GCAAATTCGAGTGTCGTTTCCAA 60.547 43.478 0.00 0.00 41.35 3.53
197 198 2.032377 GCAAATTCGAGTGTCGTTTCCA 60.032 45.455 0.00 0.00 41.35 3.53
198 199 2.223377 AGCAAATTCGAGTGTCGTTTCC 59.777 45.455 0.00 0.00 41.35 3.13
199 200 3.059868 TCAGCAAATTCGAGTGTCGTTTC 60.060 43.478 0.00 0.00 41.35 2.78
200 201 2.869801 TCAGCAAATTCGAGTGTCGTTT 59.130 40.909 0.00 0.00 41.35 3.60
201 202 2.479837 TCAGCAAATTCGAGTGTCGTT 58.520 42.857 0.00 0.00 41.35 3.85
202 203 2.148916 TCAGCAAATTCGAGTGTCGT 57.851 45.000 0.00 0.00 41.35 4.34
203 204 2.220824 TGTTCAGCAAATTCGAGTGTCG 59.779 45.455 0.00 0.00 42.10 4.35
204 205 3.364366 CCTGTTCAGCAAATTCGAGTGTC 60.364 47.826 0.00 0.00 0.00 3.67
205 206 2.549754 CCTGTTCAGCAAATTCGAGTGT 59.450 45.455 0.00 0.00 0.00 3.55
206 207 2.095567 CCCTGTTCAGCAAATTCGAGTG 60.096 50.000 0.00 0.00 0.00 3.51
207 208 2.154462 CCCTGTTCAGCAAATTCGAGT 58.846 47.619 0.00 0.00 0.00 4.18
208 209 1.470098 CCCCTGTTCAGCAAATTCGAG 59.530 52.381 0.00 0.00 0.00 4.04
209 210 1.533625 CCCCTGTTCAGCAAATTCGA 58.466 50.000 0.00 0.00 0.00 3.71
210 211 0.109132 GCCCCTGTTCAGCAAATTCG 60.109 55.000 0.00 0.00 0.00 3.34
211 212 0.109132 CGCCCCTGTTCAGCAAATTC 60.109 55.000 0.00 0.00 0.00 2.17
212 213 0.539438 TCGCCCCTGTTCAGCAAATT 60.539 50.000 0.00 0.00 0.00 1.82
213 214 0.962356 CTCGCCCCTGTTCAGCAAAT 60.962 55.000 0.00 0.00 0.00 2.32
214 215 1.600636 CTCGCCCCTGTTCAGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
215 216 2.032528 CTCGCCCCTGTTCAGCAA 59.967 61.111 0.00 0.00 0.00 3.91
216 217 4.704833 GCTCGCCCCTGTTCAGCA 62.705 66.667 0.00 0.00 0.00 4.41
217 218 4.704833 TGCTCGCCCCTGTTCAGC 62.705 66.667 0.00 0.00 0.00 4.26
218 219 2.032528 TTGCTCGCCCCTGTTCAG 59.967 61.111 0.00 0.00 0.00 3.02
219 220 1.841302 ATCTTGCTCGCCCCTGTTCA 61.841 55.000 0.00 0.00 0.00 3.18
220 221 1.078143 ATCTTGCTCGCCCCTGTTC 60.078 57.895 0.00 0.00 0.00 3.18
221 222 1.377725 CATCTTGCTCGCCCCTGTT 60.378 57.895 0.00 0.00 0.00 3.16
222 223 2.129555 AACATCTTGCTCGCCCCTGT 62.130 55.000 0.00 0.00 0.00 4.00
223 224 1.377725 AACATCTTGCTCGCCCCTG 60.378 57.895 0.00 0.00 0.00 4.45
224 225 1.377725 CAACATCTTGCTCGCCCCT 60.378 57.895 0.00 0.00 0.00 4.79
225 226 3.190878 CAACATCTTGCTCGCCCC 58.809 61.111 0.00 0.00 0.00 5.80
233 234 1.069022 CCTCACCGTTGCAACATCTTG 60.069 52.381 28.01 17.72 0.00 3.02
234 235 1.238439 CCTCACCGTTGCAACATCTT 58.762 50.000 28.01 6.88 0.00 2.40
235 236 0.108585 ACCTCACCGTTGCAACATCT 59.891 50.000 28.01 7.56 0.00 2.90
236 237 0.238289 CACCTCACCGTTGCAACATC 59.762 55.000 28.01 2.77 0.00 3.06
237 238 1.795170 GCACCTCACCGTTGCAACAT 61.795 55.000 28.01 13.58 0.00 2.71
238 239 2.477176 GCACCTCACCGTTGCAACA 61.477 57.895 28.01 8.70 0.00 3.33
239 240 2.331451 GCACCTCACCGTTGCAAC 59.669 61.111 19.89 19.89 0.00 4.17
240 241 3.276091 CGCACCTCACCGTTGCAA 61.276 61.111 0.00 0.00 0.00 4.08
241 242 4.228567 TCGCACCTCACCGTTGCA 62.229 61.111 0.00 0.00 0.00 4.08
242 243 3.712881 GTCGCACCTCACCGTTGC 61.713 66.667 0.00 0.00 0.00 4.17
243 244 2.029073 AGTCGCACCTCACCGTTG 59.971 61.111 0.00 0.00 0.00 4.10
244 245 2.029073 CAGTCGCACCTCACCGTT 59.971 61.111 0.00 0.00 0.00 4.44
245 246 2.910479 TCAGTCGCACCTCACCGT 60.910 61.111 0.00 0.00 0.00 4.83
246 247 2.430921 GTCAGTCGCACCTCACCG 60.431 66.667 0.00 0.00 0.00 4.94
247 248 2.430921 CGTCAGTCGCACCTCACC 60.431 66.667 0.00 0.00 0.00 4.02
248 249 2.430921 CCGTCAGTCGCACCTCAC 60.431 66.667 0.00 0.00 38.35 3.51
249 250 3.680786 CCCGTCAGTCGCACCTCA 61.681 66.667 0.00 0.00 38.35 3.86
252 253 3.755628 TAGCCCGTCAGTCGCACC 61.756 66.667 0.00 0.00 38.35 5.01
253 254 2.506438 GTAGCCCGTCAGTCGCAC 60.506 66.667 0.00 0.00 38.35 5.34
254 255 1.033202 TATGTAGCCCGTCAGTCGCA 61.033 55.000 0.00 0.00 38.35 5.10
255 256 0.101759 TTATGTAGCCCGTCAGTCGC 59.898 55.000 0.00 0.00 38.35 5.19
256 257 2.662700 GATTATGTAGCCCGTCAGTCG 58.337 52.381 0.00 0.00 39.52 4.18
257 258 2.607282 CCGATTATGTAGCCCGTCAGTC 60.607 54.545 0.00 0.00 0.00 3.51
258 259 1.340248 CCGATTATGTAGCCCGTCAGT 59.660 52.381 0.00 0.00 0.00 3.41
259 260 1.336887 CCCGATTATGTAGCCCGTCAG 60.337 57.143 0.00 0.00 0.00 3.51
260 261 0.677288 CCCGATTATGTAGCCCGTCA 59.323 55.000 0.00 0.00 0.00 4.35
261 262 0.669625 GCCCGATTATGTAGCCCGTC 60.670 60.000 0.00 0.00 0.00 4.79
262 263 1.370064 GCCCGATTATGTAGCCCGT 59.630 57.895 0.00 0.00 0.00 5.28
263 264 0.036388 ATGCCCGATTATGTAGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
264 265 1.453155 CATGCCCGATTATGTAGCCC 58.547 55.000 0.00 0.00 0.00 5.19
265 266 1.453155 CCATGCCCGATTATGTAGCC 58.547 55.000 0.00 0.00 0.00 3.93
266 267 1.453155 CCCATGCCCGATTATGTAGC 58.547 55.000 0.00 0.00 0.00 3.58
267 268 1.453155 GCCCATGCCCGATTATGTAG 58.547 55.000 0.00 0.00 0.00 2.74
268 269 0.321210 CGCCCATGCCCGATTATGTA 60.321 55.000 0.00 0.00 0.00 2.29
269 270 1.600636 CGCCCATGCCCGATTATGT 60.601 57.895 0.00 0.00 0.00 2.29
270 271 2.334946 CCGCCCATGCCCGATTATG 61.335 63.158 5.00 0.00 0.00 1.90
271 272 2.034066 CCGCCCATGCCCGATTAT 59.966 61.111 5.00 0.00 0.00 1.28
272 273 3.484806 ACCGCCCATGCCCGATTA 61.485 61.111 5.00 0.00 0.00 1.75
296 297 4.662961 TCACAGCCTGCCGACGTG 62.663 66.667 0.00 0.00 0.00 4.49
297 298 4.664677 GTCACAGCCTGCCGACGT 62.665 66.667 0.00 0.00 0.00 4.34
299 300 3.612247 ATGGTCACAGCCTGCCGAC 62.612 63.158 6.37 6.37 0.00 4.79
300 301 3.315142 GATGGTCACAGCCTGCCGA 62.315 63.158 0.00 0.00 0.00 5.54
301 302 2.821366 GATGGTCACAGCCTGCCG 60.821 66.667 0.00 0.00 0.00 5.69
302 303 2.821366 CGATGGTCACAGCCTGCC 60.821 66.667 0.00 0.00 0.00 4.85
303 304 3.503363 GCGATGGTCACAGCCTGC 61.503 66.667 0.00 0.00 0.00 4.85
304 305 2.821366 GGCGATGGTCACAGCCTG 60.821 66.667 10.08 0.00 45.67 4.85
311 312 3.770040 CTCCGGTGGCGATGGTCA 61.770 66.667 0.00 0.00 0.00 4.02
345 346 1.180456 TTCCACCCATGCAACAGCTG 61.180 55.000 13.48 13.48 0.00 4.24
346 347 0.469705 TTTCCACCCATGCAACAGCT 60.470 50.000 0.00 0.00 0.00 4.24
347 348 0.319813 GTTTCCACCCATGCAACAGC 60.320 55.000 0.00 0.00 0.00 4.40
348 349 0.039256 CGTTTCCACCCATGCAACAG 60.039 55.000 0.00 0.00 0.00 3.16
349 350 1.459455 CCGTTTCCACCCATGCAACA 61.459 55.000 0.00 0.00 0.00 3.33
350 351 1.288752 CCGTTTCCACCCATGCAAC 59.711 57.895 0.00 0.00 0.00 4.17
351 352 2.569354 GCCGTTTCCACCCATGCAA 61.569 57.895 0.00 0.00 0.00 4.08
352 353 2.988684 GCCGTTTCCACCCATGCA 60.989 61.111 0.00 0.00 0.00 3.96
353 354 4.114997 CGCCGTTTCCACCCATGC 62.115 66.667 0.00 0.00 0.00 4.06
354 355 2.359354 TCGCCGTTTCCACCCATG 60.359 61.111 0.00 0.00 0.00 3.66
355 356 2.046314 CTCGCCGTTTCCACCCAT 60.046 61.111 0.00 0.00 0.00 4.00
356 357 4.323477 CCTCGCCGTTTCCACCCA 62.323 66.667 0.00 0.00 0.00 4.51
360 361 4.697756 CTGCCCTCGCCGTTTCCA 62.698 66.667 0.00 0.00 0.00 3.53
378 379 4.907034 CGTCCTCATCGCCGGTCG 62.907 72.222 1.90 7.73 40.15 4.79
379 380 4.570663 CCGTCCTCATCGCCGGTC 62.571 72.222 1.90 0.00 35.78 4.79
381 382 4.570663 GTCCGTCCTCATCGCCGG 62.571 72.222 0.00 0.00 41.75 6.13
382 383 4.907034 CGTCCGTCCTCATCGCCG 62.907 72.222 0.00 0.00 0.00 6.46
383 384 4.570663 CCGTCCGTCCTCATCGCC 62.571 72.222 0.00 0.00 0.00 5.54
385 386 4.907034 CGCCGTCCGTCCTCATCG 62.907 72.222 0.00 0.00 0.00 3.84
386 387 2.938539 CTTCGCCGTCCGTCCTCATC 62.939 65.000 0.00 0.00 38.35 2.92
387 388 3.064987 CTTCGCCGTCCGTCCTCAT 62.065 63.158 0.00 0.00 38.35 2.90
388 389 3.744719 CTTCGCCGTCCGTCCTCA 61.745 66.667 0.00 0.00 38.35 3.86
389 390 4.493747 CCTTCGCCGTCCGTCCTC 62.494 72.222 0.00 0.00 38.35 3.71
400 401 4.742201 TCTGGTCGCTGCCTTCGC 62.742 66.667 0.00 0.00 0.00 4.70
401 402 2.507992 CTCTGGTCGCTGCCTTCG 60.508 66.667 0.00 0.00 0.00 3.79
402 403 1.153667 CTCTCTGGTCGCTGCCTTC 60.154 63.158 0.00 0.00 0.00 3.46
403 404 2.977178 CTCTCTGGTCGCTGCCTT 59.023 61.111 0.00 0.00 0.00 4.35
404 405 3.768922 GCTCTCTGGTCGCTGCCT 61.769 66.667 0.00 0.00 0.00 4.75
405 406 3.382803 ATGCTCTCTGGTCGCTGCC 62.383 63.158 0.00 0.00 0.00 4.85
406 407 2.172372 CATGCTCTCTGGTCGCTGC 61.172 63.158 0.00 0.00 0.00 5.25
407 408 1.082679 CACATGCTCTCTGGTCGCTG 61.083 60.000 0.00 0.00 0.00 5.18
408 409 1.217511 CACATGCTCTCTGGTCGCT 59.782 57.895 0.00 0.00 0.00 4.93
409 410 2.459442 GCACATGCTCTCTGGTCGC 61.459 63.158 0.00 0.00 38.21 5.19
410 411 2.163390 CGCACATGCTCTCTGGTCG 61.163 63.158 1.82 0.00 39.32 4.79
411 412 1.080995 GTCGCACATGCTCTCTGGTC 61.081 60.000 1.82 0.00 39.32 4.02
412 413 1.079543 GTCGCACATGCTCTCTGGT 60.080 57.895 1.82 0.00 39.32 4.00
413 414 1.812922 GGTCGCACATGCTCTCTGG 60.813 63.158 1.82 0.00 39.32 3.86
414 415 2.163390 CGGTCGCACATGCTCTCTG 61.163 63.158 1.82 0.00 39.32 3.35
415 416 2.182791 CGGTCGCACATGCTCTCT 59.817 61.111 1.82 0.00 39.32 3.10
416 417 2.887568 CCGGTCGCACATGCTCTC 60.888 66.667 1.82 0.00 39.32 3.20
421 422 4.794439 TCTCGCCGGTCGCACATG 62.794 66.667 12.56 0.00 37.30 3.21
422 423 3.838271 ATCTCGCCGGTCGCACAT 61.838 61.111 12.56 2.99 37.30 3.21
423 424 4.794439 CATCTCGCCGGTCGCACA 62.794 66.667 12.56 0.95 37.30 4.57
424 425 3.982372 TTCATCTCGCCGGTCGCAC 62.982 63.158 12.56 0.00 37.30 5.34
425 426 3.289704 TTTCATCTCGCCGGTCGCA 62.290 57.895 12.56 3.45 37.30 5.10
426 427 2.508439 TTTCATCTCGCCGGTCGC 60.508 61.111 12.56 0.00 38.27 5.19
427 428 0.867753 CTCTTTCATCTCGCCGGTCG 60.868 60.000 1.90 7.73 40.15 4.79
428 429 0.456221 TCTCTTTCATCTCGCCGGTC 59.544 55.000 1.90 0.00 0.00 4.79
429 430 0.457851 CTCTCTTTCATCTCGCCGGT 59.542 55.000 1.90 0.00 0.00 5.28
430 431 0.873743 GCTCTCTTTCATCTCGCCGG 60.874 60.000 0.00 0.00 0.00 6.13
431 432 1.205485 CGCTCTCTTTCATCTCGCCG 61.205 60.000 0.00 0.00 0.00 6.46
432 433 0.101399 TCGCTCTCTTTCATCTCGCC 59.899 55.000 0.00 0.00 0.00 5.54
433 434 1.064803 TCTCGCTCTCTTTCATCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
434 435 3.064682 TCTTCTCGCTCTCTTTCATCTCG 59.935 47.826 0.00 0.00 0.00 4.04
435 436 4.630894 TCTTCTCGCTCTCTTTCATCTC 57.369 45.455 0.00 0.00 0.00 2.75
436 437 4.737352 GCATCTTCTCGCTCTCTTTCATCT 60.737 45.833 0.00 0.00 0.00 2.90
437 438 3.490526 GCATCTTCTCGCTCTCTTTCATC 59.509 47.826 0.00 0.00 0.00 2.92
438 439 3.118847 TGCATCTTCTCGCTCTCTTTCAT 60.119 43.478 0.00 0.00 0.00 2.57
439 440 2.232208 TGCATCTTCTCGCTCTCTTTCA 59.768 45.455 0.00 0.00 0.00 2.69
440 441 2.859538 CTGCATCTTCTCGCTCTCTTTC 59.140 50.000 0.00 0.00 0.00 2.62
441 442 2.418471 CCTGCATCTTCTCGCTCTCTTT 60.418 50.000 0.00 0.00 0.00 2.52
442 443 1.136695 CCTGCATCTTCTCGCTCTCTT 59.863 52.381 0.00 0.00 0.00 2.85
443 444 0.746063 CCTGCATCTTCTCGCTCTCT 59.254 55.000 0.00 0.00 0.00 3.10
444 445 0.743688 TCCTGCATCTTCTCGCTCTC 59.256 55.000 0.00 0.00 0.00 3.20
445 446 1.189752 TTCCTGCATCTTCTCGCTCT 58.810 50.000 0.00 0.00 0.00 4.09
446 447 2.015736 TTTCCTGCATCTTCTCGCTC 57.984 50.000 0.00 0.00 0.00 5.03
447 448 2.559440 GATTTCCTGCATCTTCTCGCT 58.441 47.619 0.00 0.00 0.00 4.93
448 449 1.601430 GGATTTCCTGCATCTTCTCGC 59.399 52.381 0.00 0.00 0.00 5.03
449 450 3.191078 AGGATTTCCTGCATCTTCTCG 57.809 47.619 0.00 0.00 46.55 4.04
459 460 7.469870 TTGTCAACACATACAAAGGATTTCCTG 60.470 37.037 0.00 0.00 38.30 3.86
460 461 6.549364 TTGTCAACACATACAAAGGATTTCCT 59.451 34.615 0.00 0.00 39.40 3.36
461 462 6.325919 TGTCAACACATACAAAGGATTTCC 57.674 37.500 0.00 0.00 35.03 3.13
469 470 7.424803 CATCTTCCTTTGTCAACACATACAAA 58.575 34.615 0.00 0.00 41.86 2.83
470 471 6.514870 GCATCTTCCTTTGTCAACACATACAA 60.515 38.462 0.00 0.00 33.92 2.41
471 472 5.048782 GCATCTTCCTTTGTCAACACATACA 60.049 40.000 0.00 0.00 30.55 2.29
472 473 5.048782 TGCATCTTCCTTTGTCAACACATAC 60.049 40.000 0.00 0.00 30.55 2.39
473 474 5.048782 GTGCATCTTCCTTTGTCAACACATA 60.049 40.000 0.00 0.00 30.55 2.29
474 475 3.890756 TGCATCTTCCTTTGTCAACACAT 59.109 39.130 0.00 0.00 30.55 3.21
475 476 3.066621 GTGCATCTTCCTTTGTCAACACA 59.933 43.478 0.00 0.00 0.00 3.72
476 477 3.632189 GTGCATCTTCCTTTGTCAACAC 58.368 45.455 0.00 0.00 0.00 3.32
477 478 2.290367 CGTGCATCTTCCTTTGTCAACA 59.710 45.455 0.00 0.00 0.00 3.33
478 479 2.548057 TCGTGCATCTTCCTTTGTCAAC 59.452 45.455 0.00 0.00 0.00 3.18
479 480 2.844946 TCGTGCATCTTCCTTTGTCAA 58.155 42.857 0.00 0.00 0.00 3.18
480 481 2.542020 TCGTGCATCTTCCTTTGTCA 57.458 45.000 0.00 0.00 0.00 3.58
481 482 3.896648 TTTCGTGCATCTTCCTTTGTC 57.103 42.857 0.00 0.00 0.00 3.18
482 483 3.191371 GGATTTCGTGCATCTTCCTTTGT 59.809 43.478 0.00 0.00 0.00 2.83
483 484 3.441572 AGGATTTCGTGCATCTTCCTTTG 59.558 43.478 0.00 0.00 29.33 2.77
484 485 3.690460 AGGATTTCGTGCATCTTCCTTT 58.310 40.909 0.00 0.00 29.33 3.11
485 486 3.356529 AGGATTTCGTGCATCTTCCTT 57.643 42.857 0.00 0.00 29.33 3.36
486 487 3.738281 CGTAGGATTTCGTGCATCTTCCT 60.738 47.826 10.29 10.29 37.38 3.36
487 488 2.540101 CGTAGGATTTCGTGCATCTTCC 59.460 50.000 0.00 0.00 0.00 3.46
488 489 3.187700 ACGTAGGATTTCGTGCATCTTC 58.812 45.455 0.00 0.00 38.85 2.87
497 498 1.999735 ACATGCACACGTAGGATTTCG 59.000 47.619 0.00 0.00 0.00 3.46
506 507 1.090728 TTGTCAACACATGCACACGT 58.909 45.000 0.00 0.00 30.55 4.49
508 509 2.853594 CACTTTGTCAACACATGCACAC 59.146 45.455 0.00 0.00 30.55 3.82
510 511 1.854126 GCACTTTGTCAACACATGCAC 59.146 47.619 0.00 0.00 31.93 4.57
514 515 2.796304 CGTTGCACTTTGTCAACACAT 58.204 42.857 6.03 0.00 41.80 3.21
516 517 0.913876 GCGTTGCACTTTGTCAACAC 59.086 50.000 6.03 0.00 41.80 3.32
532 533 2.548875 TGTAAGTTTGTAACCGTGCGT 58.451 42.857 0.00 0.00 0.00 5.24
533 534 3.589061 TTGTAAGTTTGTAACCGTGCG 57.411 42.857 0.00 0.00 0.00 5.34
534 535 6.146673 AGTCTATTGTAAGTTTGTAACCGTGC 59.853 38.462 0.00 0.00 0.00 5.34
535 536 7.647907 AGTCTATTGTAAGTTTGTAACCGTG 57.352 36.000 0.00 0.00 0.00 4.94
536 537 9.762933 TTTAGTCTATTGTAAGTTTGTAACCGT 57.237 29.630 0.00 0.00 0.00 4.83
542 543 9.886132 ATCCGATTTAGTCTATTGTAAGTTTGT 57.114 29.630 0.00 0.00 0.00 2.83
544 545 9.326413 CCATCCGATTTAGTCTATTGTAAGTTT 57.674 33.333 0.00 0.00 0.00 2.66
545 546 7.441458 GCCATCCGATTTAGTCTATTGTAAGTT 59.559 37.037 0.00 0.00 0.00 2.66
546 547 6.929606 GCCATCCGATTTAGTCTATTGTAAGT 59.070 38.462 0.00 0.00 0.00 2.24
547 548 7.116948 CAGCCATCCGATTTAGTCTATTGTAAG 59.883 40.741 0.00 0.00 0.00 2.34
551 552 5.178252 CACAGCCATCCGATTTAGTCTATTG 59.822 44.000 0.00 0.00 0.00 1.90
553 554 4.262635 CCACAGCCATCCGATTTAGTCTAT 60.263 45.833 0.00 0.00 0.00 1.98
558 559 1.134098 ACCCACAGCCATCCGATTTAG 60.134 52.381 0.00 0.00 0.00 1.85
559 560 0.916086 ACCCACAGCCATCCGATTTA 59.084 50.000 0.00 0.00 0.00 1.40
571 572 2.674563 TTTGGCCAGTCGACCCACAG 62.675 60.000 13.01 0.00 0.00 3.66
573 574 0.893727 AATTTGGCCAGTCGACCCAC 60.894 55.000 13.01 0.91 0.00 4.61
599 601 2.657620 GATAAGCGCCGGTCGACC 60.658 66.667 25.28 25.28 41.67 4.79
610 612 1.883084 CACACGGCGGGAGATAAGC 60.883 63.158 19.75 0.00 0.00 3.09
611 613 1.227263 CCACACGGCGGGAGATAAG 60.227 63.158 19.75 0.00 0.00 1.73
612 614 2.897207 CCACACGGCGGGAGATAA 59.103 61.111 19.75 0.00 0.00 1.75
624 626 1.281867 TGGAGACATGGATTCCCACAC 59.718 52.381 0.00 0.00 46.98 3.82
698 718 2.940410 ACACGGCGGAATAAAATAGTGG 59.060 45.455 13.24 0.00 33.18 4.00
720 740 2.842462 ACACCAGCGGTCTGTGGA 60.842 61.111 15.75 0.00 38.66 4.02
749 769 1.200948 GCAGAGGCAAAGACAATGGAC 59.799 52.381 0.00 0.00 40.72 4.02
841 875 0.618458 TATGGGGGAAGTGTGAGTGC 59.382 55.000 0.00 0.00 0.00 4.40
908 957 3.734231 CGATGGTTGCATAGTAGTAACGG 59.266 47.826 0.00 0.00 35.32 4.44
910 959 5.983720 ACATCGATGGTTGCATAGTAGTAAC 59.016 40.000 28.09 0.00 33.98 2.50
911 960 6.156748 ACATCGATGGTTGCATAGTAGTAA 57.843 37.500 28.09 0.00 0.00 2.24
936 1000 2.399448 GACGATCAAGCTAAGCTAGGC 58.601 52.381 3.01 3.01 38.25 3.93
949 1024 3.130516 CCTTGTAGCTACTTGGACGATCA 59.869 47.826 23.84 0.00 0.00 2.92
956 1031 0.462047 CCGGCCTTGTAGCTACTTGG 60.462 60.000 23.84 23.22 0.00 3.61
957 1032 1.090052 GCCGGCCTTGTAGCTACTTG 61.090 60.000 23.84 15.60 0.00 3.16
987 1063 1.017387 GTCCCATTGATTCGTCTGCC 58.983 55.000 0.00 0.00 0.00 4.85
1064 1146 2.791655 TGTAGAGCTTCTCGTCTTCCA 58.208 47.619 0.00 0.00 35.36 3.53
1164 1246 3.621805 TTGAGCCACCGGAAGCGA 61.622 61.111 9.46 0.00 0.00 4.93
1168 1250 0.834687 AGGTAGTTGAGCCACCGGAA 60.835 55.000 9.46 0.00 37.42 4.30
1276 1358 2.051804 CTGAATGAATCGCACGGGCC 62.052 60.000 2.82 0.00 36.38 5.80
1285 1383 6.504799 GCGCAATTAAACGAACTGAATGAATC 60.505 38.462 0.30 0.00 0.00 2.52
1301 1407 6.096141 TCTCCCAAATCTTTATGCGCAATTAA 59.904 34.615 17.11 6.80 0.00 1.40
1307 1415 4.574599 ATTCTCCCAAATCTTTATGCGC 57.425 40.909 0.00 0.00 0.00 6.09
1308 1416 7.645340 CAGTAAATTCTCCCAAATCTTTATGCG 59.355 37.037 0.00 0.00 0.00 4.73
1325 1483 9.229784 CACATGCATGAGTAATTCAGTAAATTC 57.770 33.333 32.75 0.00 39.68 2.17
1329 1487 7.075674 CACACATGCATGAGTAATTCAGTAA 57.924 36.000 32.75 0.00 39.68 2.24
1347 1521 2.979676 CCACCTGCACGCACACAT 60.980 61.111 0.00 0.00 0.00 3.21
1475 1681 4.259952 GCCATACCCTTGGGCTTC 57.740 61.111 5.46 0.00 44.32 3.86
1533 1765 2.671963 GACCACCGTGGAAAGGGC 60.672 66.667 24.80 0.00 41.07 5.19
1716 1952 2.989824 ACAGCTGTAGTCGCCGGT 60.990 61.111 20.16 0.00 0.00 5.28
1736 1972 0.038159 GGTTCTCTGACACGTCCAGG 60.038 60.000 12.84 5.90 32.73 4.45
1839 2106 2.543067 ATCTCCGCCTTTGCCCAGTC 62.543 60.000 0.00 0.00 0.00 3.51
1859 2126 4.980805 TGGTCGTGTTGCCGCTCC 62.981 66.667 0.00 0.00 0.00 4.70
1860 2127 2.970324 TTGGTCGTGTTGCCGCTC 60.970 61.111 0.00 0.00 0.00 5.03
1861 2128 3.276846 GTTGGTCGTGTTGCCGCT 61.277 61.111 0.00 0.00 0.00 5.52
1862 2129 3.276846 AGTTGGTCGTGTTGCCGC 61.277 61.111 0.00 0.00 0.00 6.53
1863 2130 2.631428 CAGTTGGTCGTGTTGCCG 59.369 61.111 0.00 0.00 0.00 5.69
1864 2131 2.186826 AGCAGTTGGTCGTGTTGCC 61.187 57.895 0.00 0.00 35.44 4.52
1865 2132 1.009675 CAGCAGTTGGTCGTGTTGC 60.010 57.895 0.00 0.00 35.09 4.17
1866 2133 1.648720 CCAGCAGTTGGTCGTGTTG 59.351 57.895 0.00 0.00 42.41 3.33
1867 2134 4.141144 CCAGCAGTTGGTCGTGTT 57.859 55.556 0.00 0.00 42.41 3.32
1880 2147 1.211743 GCAAAAACTTGTGCTCCAGC 58.788 50.000 0.00 0.00 37.78 4.85
1897 2188 4.666253 GTTCTGGGCAGGGCAGCA 62.666 66.667 0.00 0.00 35.83 4.41
2059 2380 3.060740 GTGTCCGTCTTGTAAACTGTTCG 60.061 47.826 0.00 0.00 0.00 3.95
2063 2384 3.619483 TGTTGTGTCCGTCTTGTAAACTG 59.381 43.478 0.00 0.00 0.00 3.16
2085 2407 9.959749 AAAATACAATCACGTGAAAGTTTGTAT 57.040 25.926 31.06 31.06 38.57 2.29
2130 2452 7.254966 CGCAACTGCCCTAAAAATATGTACATA 60.255 37.037 17.65 17.65 37.91 2.29
2202 3097 0.821711 TTGCCCGAAAGTGACCAAGG 60.822 55.000 0.00 0.00 0.00 3.61
2203 3098 0.593128 CTTGCCCGAAAGTGACCAAG 59.407 55.000 0.00 0.00 0.00 3.61
2204 3099 0.106918 ACTTGCCCGAAAGTGACCAA 60.107 50.000 0.00 0.00 38.95 3.67
2206 3101 4.475527 ACTTGCCCGAAAGTGACC 57.524 55.556 0.00 0.00 38.95 4.02
2210 3105 2.203153 ACGCACTTGCCCGAAAGT 60.203 55.556 0.00 0.00 41.08 2.66
2211 3106 2.252260 CACGCACTTGCCCGAAAG 59.748 61.111 0.00 0.00 37.91 2.62
2216 3111 3.670377 GAACCCACGCACTTGCCC 61.670 66.667 0.00 0.00 37.91 5.36
2221 3116 2.989055 CTTGACGGAACCCACGCACT 62.989 60.000 0.00 0.00 34.00 4.40
2226 3121 3.404899 TGTAAATCTTGACGGAACCCAC 58.595 45.455 0.00 0.00 0.00 4.61
2234 3129 4.647964 CGGGTGAAATGTAAATCTTGACG 58.352 43.478 0.00 0.00 0.00 4.35
2265 3160 9.499585 GTGTGATCATCAAATGTAAATCTCTTG 57.500 33.333 0.00 0.00 0.00 3.02
2269 3164 9.234827 TCAAGTGTGATCATCAAATGTAAATCT 57.765 29.630 0.00 0.00 0.00 2.40
2287 3183 9.385902 CTGTTTGTATTCTAAACATCAAGTGTG 57.614 33.333 0.00 0.00 44.32 3.82
2322 3220 6.702716 ATAGTAGAACAGAAGGAGTAGCAC 57.297 41.667 0.00 0.00 0.00 4.40
2455 3353 8.491152 CAAATTGGTATCATTACATCTCGAGAC 58.509 37.037 19.30 0.76 0.00 3.36
2570 3469 6.650120 TCCACAAGATTTATGTACTCCCTTC 58.350 40.000 0.00 0.00 0.00 3.46
2597 3496 7.065204 ACACATAACACAAAACCATGAAAAACC 59.935 33.333 0.00 0.00 0.00 3.27
2605 3504 4.584325 AGAGCACACATAACACAAAACCAT 59.416 37.500 0.00 0.00 0.00 3.55
2608 3507 5.168526 TGAGAGCACACATAACACAAAAC 57.831 39.130 0.00 0.00 0.00 2.43
2647 3546 1.627864 ACCCGCAAAAGCATACCTTT 58.372 45.000 0.00 0.00 45.49 3.11
2657 3556 1.846007 AATCATGCCTACCCGCAAAA 58.154 45.000 0.00 0.00 43.24 2.44
2691 3590 9.619316 CGAAACCTAATAAAAACACATCAATCA 57.381 29.630 0.00 0.00 0.00 2.57
2692 3591 9.072294 CCGAAACCTAATAAAAACACATCAATC 57.928 33.333 0.00 0.00 0.00 2.67
2732 3631 3.548770 TGCCTAAGCAGAAGAATGATGG 58.451 45.455 0.00 0.00 46.52 3.51
2808 3707 4.647399 TGGTTACAAAGGAAGGAAAACAGG 59.353 41.667 0.00 0.00 0.00 4.00
2811 3710 5.105675 TGTGTGGTTACAAAGGAAGGAAAAC 60.106 40.000 0.00 0.00 38.82 2.43
2870 3770 7.989826 ACTATGCTCTAAAGTTTTATTGCAGG 58.010 34.615 0.00 11.36 35.69 4.85
2872 3772 9.624697 CAAACTATGCTCTAAAGTTTTATTGCA 57.375 29.630 0.00 11.34 40.52 4.08
2877 3777 8.927675 TTCCCAAACTATGCTCTAAAGTTTTA 57.072 30.769 0.00 0.00 40.52 1.52
2900 3800 9.736023 GATGGACAATATTGTGGAACTAAATTC 57.264 33.333 25.42 6.41 42.43 2.17
2901 3801 8.695456 GGATGGACAATATTGTGGAACTAAATT 58.305 33.333 25.42 0.00 42.43 1.82
2902 3802 7.287696 GGGATGGACAATATTGTGGAACTAAAT 59.712 37.037 25.42 7.11 42.43 1.40
2903 3803 6.605594 GGGATGGACAATATTGTGGAACTAAA 59.394 38.462 25.42 2.81 42.43 1.85
2904 3804 6.126409 GGGATGGACAATATTGTGGAACTAA 58.874 40.000 25.42 4.95 42.43 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.