Multiple sequence alignment - TraesCS1A01G366000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G366000 chr1A 100.000 3257 0 0 1 3257 544926744 544930000 0.000000e+00 6015
1 TraesCS1A01G366000 chr1A 90.076 927 49 19 1223 2111 544748426 544749347 0.000000e+00 1162
2 TraesCS1A01G366000 chr1A 82.885 929 98 36 1223 2109 545009364 545008455 0.000000e+00 778
3 TraesCS1A01G366000 chr1A 91.124 507 42 1 1431 1937 545000581 545001084 0.000000e+00 684
4 TraesCS1A01G366000 chr1A 80.998 421 43 26 807 1222 544999872 545000260 1.900000e-77 300
5 TraesCS1A01G366000 chr1A 89.950 199 18 2 2590 2787 14358928 14358731 4.170000e-64 255
6 TraesCS1A01G366000 chr1A 89.375 160 17 0 2930 3089 503556391 503556550 5.510000e-48 202
7 TraesCS1A01G366000 chr1A 83.537 164 25 2 587 748 589852148 589852311 5.630000e-33 152
8 TraesCS1A01G366000 chr1A 93.204 103 5 2 1120 1222 544748274 544748374 2.020000e-32 150
9 TraesCS1A01G366000 chr7B 97.485 1153 27 2 2105 3257 568421449 568422599 0.000000e+00 1967
10 TraesCS1A01G366000 chr7B 80.882 136 24 2 591 724 674594158 674594293 4.440000e-19 106
11 TraesCS1A01G366000 chr3A 97.111 727 14 2 2537 3257 746222839 746222114 0.000000e+00 1219
12 TraesCS1A01G366000 chr3A 97.391 230 6 0 2112 2341 746223076 746222847 3.050000e-105 392
13 TraesCS1A01G366000 chr1D 90.652 920 54 20 1223 2111 449674774 449675692 0.000000e+00 1194
14 TraesCS1A01G366000 chr1D 90.111 809 50 16 1225 2003 449660525 449661333 0.000000e+00 1024
15 TraesCS1A01G366000 chr1D 85.851 940 60 28 1223 2110 449752766 449753684 0.000000e+00 931
16 TraesCS1A01G366000 chr1D 87.162 740 67 15 1223 1937 449923461 449922725 0.000000e+00 815
17 TraesCS1A01G366000 chr1D 89.764 508 50 2 1431 1937 449847234 449847740 0.000000e+00 649
18 TraesCS1A01G366000 chr1D 89.770 479 34 7 748 1222 449846456 449846923 1.670000e-167 599
19 TraesCS1A01G366000 chr1D 84.634 410 43 9 821 1222 449660074 449660471 1.100000e-104 390
20 TraesCS1A01G366000 chr1D 83.491 424 41 13 815 1222 449923923 449923513 5.130000e-98 368
21 TraesCS1A01G366000 chr1D 82.308 390 37 17 836 1219 449674356 449674719 3.160000e-80 309
22 TraesCS1A01G366000 chr1D 92.500 160 9 1 2930 3089 44166858 44167014 3.270000e-55 226
23 TraesCS1A01G366000 chr1D 96.429 84 3 0 3004 3087 44540344 44540427 4.380000e-29 139
24 TraesCS1A01G366000 chr1D 96.429 84 3 0 3004 3087 44562079 44562162 4.380000e-29 139
25 TraesCS1A01G366000 chr1B 86.790 810 76 9 1225 2003 615625755 615626564 0.000000e+00 874
26 TraesCS1A01G366000 chr1B 88.583 727 69 10 1223 1937 615732291 615733015 0.000000e+00 870
27 TraesCS1A01G366000 chr1B 88.842 708 51 11 1431 2111 615582107 615582813 0.000000e+00 845
28 TraesCS1A01G366000 chr1B 80.544 478 92 1 113 590 662465369 662465845 1.850000e-97 366
29 TraesCS1A01G366000 chr1B 82.864 391 28 10 841 1222 615731879 615732239 6.780000e-82 315
30 TraesCS1A01G366000 chr1B 81.203 399 34 27 849 1222 615625319 615625701 1.910000e-72 283
31 TraesCS1A01G366000 chr1B 92.513 187 10 1 1223 1405 615581866 615582052 6.930000e-67 265
32 TraesCS1A01G366000 chr1B 87.310 197 21 4 1223 1415 615745063 615744867 4.230000e-54 222
33 TraesCS1A01G366000 chr1B 87.310 197 21 4 1223 1415 616132497 616132301 4.230000e-54 222
34 TraesCS1A01G366000 chr1B 79.675 246 21 19 983 1222 615581592 615581814 2.020000e-32 150
35 TraesCS1A01G366000 chr4B 92.308 572 37 6 2691 3257 19037240 19037809 0.000000e+00 806
36 TraesCS1A01G366000 chr4B 86.449 642 54 14 2146 2783 234463852 234464464 0.000000e+00 673
37 TraesCS1A01G366000 chr4B 91.529 425 31 2 2787 3206 234472605 234473029 6.060000e-162 580
38 TraesCS1A01G366000 chr4B 89.906 426 36 3 2787 3206 304868700 304868276 2.860000e-150 542
39 TraesCS1A01G366000 chr4B 87.121 396 47 4 2389 2783 304869500 304869108 2.310000e-121 446
40 TraesCS1A01G366000 chr4B 90.747 281 17 2 2360 2640 19036964 19037235 1.850000e-97 366
41 TraesCS1A01G366000 chr2B 82.492 594 92 10 2 590 433117918 433117332 8.060000e-141 510
42 TraesCS1A01G366000 chr2B 91.875 160 12 1 2930 3089 150350172 150350330 4.230000e-54 222
43 TraesCS1A01G366000 chr6D 81.882 574 94 9 22 590 262303039 262302471 2.940000e-130 475
44 TraesCS1A01G366000 chr6D 80.551 581 106 6 13 590 80325221 80325797 1.070000e-119 440
45 TraesCS1A01G366000 chr4D 83.436 489 73 6 23 505 18211618 18212104 6.410000e-122 448
46 TraesCS1A01G366000 chr4D 91.250 160 11 1 2930 3089 207697042 207696886 7.080000e-52 215
47 TraesCS1A01G366000 chr4D 89.375 160 17 0 2930 3089 15087232 15087391 5.510000e-48 202
48 TraesCS1A01G366000 chr2A 80.505 554 100 8 40 590 491572729 491572181 5.030000e-113 418
49 TraesCS1A01G366000 chr2A 79.895 572 101 12 22 589 104917563 104917002 1.090000e-109 407
50 TraesCS1A01G366000 chr2A 92.500 160 12 0 2930 3089 256201034 256200875 2.530000e-56 230
51 TraesCS1A01G366000 chr5A 80.287 558 97 11 38 590 63383909 63383360 3.020000e-110 409
52 TraesCS1A01G366000 chr5A 92.500 160 12 0 2930 3089 139482605 139482764 2.530000e-56 230
53 TraesCS1A01G366000 chr5D 78.947 570 101 10 23 590 458002464 458001912 1.430000e-98 370
54 TraesCS1A01G366000 chr3B 93.125 160 11 0 2930 3089 429181327 429181168 5.430000e-58 235
55 TraesCS1A01G366000 chr3B 91.875 160 13 0 2930 3089 536902410 536902569 1.180000e-54 224
56 TraesCS1A01G366000 chr7D 91.720 157 13 0 2933 3089 366722730 366722574 5.470000e-53 219
57 TraesCS1A01G366000 chr4A 90.625 160 12 1 2930 3089 563254966 563254810 3.290000e-50 209
58 TraesCS1A01G366000 chr4A 90.625 160 12 1 2930 3089 563294635 563294479 3.290000e-50 209
59 TraesCS1A01G366000 chr4A 87.500 128 13 3 624 749 97985240 97985366 9.420000e-31 145
60 TraesCS1A01G366000 chr5B 89.809 157 16 0 2933 3089 637398386 637398230 5.510000e-48 202
61 TraesCS1A01G366000 chr3D 88.750 160 18 0 2930 3089 351935525 351935684 2.560000e-46 196
62 TraesCS1A01G366000 chr3D 88.750 160 18 0 2930 3089 578057464 578057623 2.560000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G366000 chr1A 544926744 544930000 3256 False 6015.0 6015 100.0000 1 3257 1 chr1A.!!$F2 3256
1 TraesCS1A01G366000 chr1A 545008455 545009364 909 True 778.0 778 82.8850 1223 2109 1 chr1A.!!$R2 886
2 TraesCS1A01G366000 chr1A 544748274 544749347 1073 False 656.0 1162 91.6400 1120 2111 2 chr1A.!!$F4 991
3 TraesCS1A01G366000 chr1A 544999872 545001084 1212 False 492.0 684 86.0610 807 1937 2 chr1A.!!$F5 1130
4 TraesCS1A01G366000 chr7B 568421449 568422599 1150 False 1967.0 1967 97.4850 2105 3257 1 chr7B.!!$F1 1152
5 TraesCS1A01G366000 chr3A 746222114 746223076 962 True 805.5 1219 97.2510 2112 3257 2 chr3A.!!$R1 1145
6 TraesCS1A01G366000 chr1D 449752766 449753684 918 False 931.0 931 85.8510 1223 2110 1 chr1D.!!$F4 887
7 TraesCS1A01G366000 chr1D 449674356 449675692 1336 False 751.5 1194 86.4800 836 2111 2 chr1D.!!$F6 1275
8 TraesCS1A01G366000 chr1D 449660074 449661333 1259 False 707.0 1024 87.3725 821 2003 2 chr1D.!!$F5 1182
9 TraesCS1A01G366000 chr1D 449846456 449847740 1284 False 624.0 649 89.7670 748 1937 2 chr1D.!!$F7 1189
10 TraesCS1A01G366000 chr1D 449922725 449923923 1198 True 591.5 815 85.3265 815 1937 2 chr1D.!!$R1 1122
11 TraesCS1A01G366000 chr1B 615731879 615733015 1136 False 592.5 870 85.7235 841 1937 2 chr1B.!!$F4 1096
12 TraesCS1A01G366000 chr1B 615625319 615626564 1245 False 578.5 874 83.9965 849 2003 2 chr1B.!!$F3 1154
13 TraesCS1A01G366000 chr1B 615581592 615582813 1221 False 420.0 845 87.0100 983 2111 3 chr1B.!!$F2 1128
14 TraesCS1A01G366000 chr4B 234463852 234464464 612 False 673.0 673 86.4490 2146 2783 1 chr4B.!!$F1 637
15 TraesCS1A01G366000 chr4B 19036964 19037809 845 False 586.0 806 91.5275 2360 3257 2 chr4B.!!$F3 897
16 TraesCS1A01G366000 chr4B 304868276 304869500 1224 True 494.0 542 88.5135 2389 3206 2 chr4B.!!$R1 817
17 TraesCS1A01G366000 chr2B 433117332 433117918 586 True 510.0 510 82.4920 2 590 1 chr2B.!!$R1 588
18 TraesCS1A01G366000 chr6D 262302471 262303039 568 True 475.0 475 81.8820 22 590 1 chr6D.!!$R1 568
19 TraesCS1A01G366000 chr6D 80325221 80325797 576 False 440.0 440 80.5510 13 590 1 chr6D.!!$F1 577
20 TraesCS1A01G366000 chr2A 491572181 491572729 548 True 418.0 418 80.5050 40 590 1 chr2A.!!$R3 550
21 TraesCS1A01G366000 chr2A 104917002 104917563 561 True 407.0 407 79.8950 22 589 1 chr2A.!!$R1 567
22 TraesCS1A01G366000 chr5A 63383360 63383909 549 True 409.0 409 80.2870 38 590 1 chr5A.!!$R1 552
23 TraesCS1A01G366000 chr5D 458001912 458002464 552 True 370.0 370 78.9470 23 590 1 chr5D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 417 0.036306 ACCATCCCCGACAACTGTTC 59.964 55.0 0.00 0.00 0.0 3.18 F
415 419 0.037697 CATCCCCGACAACTGTTCGA 60.038 55.0 3.60 0.00 0.0 3.71 F
417 421 0.037697 TCCCCGACAACTGTTCGATG 60.038 55.0 3.60 0.00 0.0 3.84 F
513 517 0.174845 TATGTTGAGCCTTCCGACGG 59.825 55.0 7.84 7.84 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1739 1.199789 GAACTGAATGCATTGCGTGGA 59.800 47.619 18.59 0.0 0.0 4.02 R
1770 2238 1.566018 CTCGTTTCCACCGCAGAACC 61.566 60.000 0.00 0.0 0.0 3.62 R
2252 2756 5.992829 TGTTGCGAGTCCTTGTTTATTCTTA 59.007 36.000 0.00 0.0 0.0 2.10 R
2643 3150 2.295070 TGCTACTCTGCTTCACGTACAA 59.705 45.455 0.00 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.742505 CTAACGTGGGCCTGTATCGA 59.257 55.000 4.53 0.00 0.00 3.59
55 56 2.916052 GCCTGTATCGATCCGCGGA 61.916 63.158 33.12 33.12 41.33 5.54
75 76 2.822701 GGGCCGGACACGATTTCC 60.823 66.667 11.00 0.00 44.60 3.13
104 108 1.685820 GGAGACAAAGTGGGGGAGG 59.314 63.158 0.00 0.00 0.00 4.30
105 109 1.685820 GAGACAAAGTGGGGGAGGG 59.314 63.158 0.00 0.00 0.00 4.30
106 110 2.035783 GACAAAGTGGGGGAGGGC 59.964 66.667 0.00 0.00 0.00 5.19
108 112 2.081585 GACAAAGTGGGGGAGGGCTT 62.082 60.000 0.00 0.00 0.00 4.35
109 113 1.156095 CAAAGTGGGGGAGGGCTTT 59.844 57.895 0.00 0.00 0.00 3.51
218 222 6.071672 CCCATTTTCTCTCCTTCCTTCTTTTC 60.072 42.308 0.00 0.00 0.00 2.29
220 224 5.913946 TTTCTCTCCTTCCTTCTTTTCCT 57.086 39.130 0.00 0.00 0.00 3.36
221 225 5.491323 TTCTCTCCTTCCTTCTTTTCCTC 57.509 43.478 0.00 0.00 0.00 3.71
222 226 4.757692 TCTCTCCTTCCTTCTTTTCCTCT 58.242 43.478 0.00 0.00 0.00 3.69
223 227 5.158889 TCTCTCCTTCCTTCTTTTCCTCTT 58.841 41.667 0.00 0.00 0.00 2.85
224 228 5.012561 TCTCTCCTTCCTTCTTTTCCTCTTG 59.987 44.000 0.00 0.00 0.00 3.02
225 229 3.755905 CTCCTTCCTTCTTTTCCTCTTGC 59.244 47.826 0.00 0.00 0.00 4.01
226 230 2.822561 CCTTCCTTCTTTTCCTCTTGCC 59.177 50.000 0.00 0.00 0.00 4.52
227 231 3.499382 CCTTCCTTCTTTTCCTCTTGCCT 60.499 47.826 0.00 0.00 0.00 4.75
228 232 3.884037 TCCTTCTTTTCCTCTTGCCTT 57.116 42.857 0.00 0.00 0.00 4.35
229 233 3.756117 TCCTTCTTTTCCTCTTGCCTTC 58.244 45.455 0.00 0.00 0.00 3.46
230 234 2.485814 CCTTCTTTTCCTCTTGCCTTCG 59.514 50.000 0.00 0.00 0.00 3.79
231 235 1.523758 TCTTTTCCTCTTGCCTTCGC 58.476 50.000 0.00 0.00 0.00 4.70
232 236 0.523519 CTTTTCCTCTTGCCTTCGCC 59.476 55.000 0.00 0.00 0.00 5.54
233 237 1.234615 TTTTCCTCTTGCCTTCGCCG 61.235 55.000 0.00 0.00 0.00 6.46
234 238 4.760047 TCCTCTTGCCTTCGCCGC 62.760 66.667 0.00 0.00 0.00 6.53
252 256 4.003788 CGTTCCACCACCTCGGCT 62.004 66.667 0.00 0.00 39.03 5.52
253 257 2.642254 CGTTCCACCACCTCGGCTA 61.642 63.158 0.00 0.00 39.03 3.93
254 258 1.079336 GTTCCACCACCTCGGCTAC 60.079 63.158 0.00 0.00 39.03 3.58
255 259 2.288025 TTCCACCACCTCGGCTACC 61.288 63.158 0.00 0.00 39.03 3.18
256 260 3.000819 CCACCACCTCGGCTACCA 61.001 66.667 0.00 0.00 39.03 3.25
257 261 2.264794 CACCACCTCGGCTACCAC 59.735 66.667 0.00 0.00 39.03 4.16
258 262 2.203728 ACCACCTCGGCTACCACA 60.204 61.111 0.00 0.00 39.03 4.17
259 263 2.264794 CCACCTCGGCTACCACAC 59.735 66.667 0.00 0.00 0.00 3.82
260 264 2.264794 CACCTCGGCTACCACACC 59.735 66.667 0.00 0.00 0.00 4.16
265 269 4.673298 CGGCTACCACACCGCACA 62.673 66.667 0.00 0.00 43.44 4.57
266 270 3.047877 GGCTACCACACCGCACAC 61.048 66.667 0.00 0.00 0.00 3.82
267 271 2.280524 GCTACCACACCGCACACA 60.281 61.111 0.00 0.00 0.00 3.72
268 272 1.890041 GCTACCACACCGCACACAA 60.890 57.895 0.00 0.00 0.00 3.33
269 273 1.841663 GCTACCACACCGCACACAAG 61.842 60.000 0.00 0.00 0.00 3.16
270 274 1.841663 CTACCACACCGCACACAAGC 61.842 60.000 0.00 0.00 0.00 4.01
271 275 3.964875 CCACACCGCACACAAGCC 61.965 66.667 0.00 0.00 0.00 4.35
272 276 3.208383 CACACCGCACACAAGCCA 61.208 61.111 0.00 0.00 0.00 4.75
273 277 2.439338 ACACCGCACACAAGCCAA 60.439 55.556 0.00 0.00 0.00 4.52
274 278 2.049185 ACACCGCACACAAGCCAAA 61.049 52.632 0.00 0.00 0.00 3.28
275 279 1.140589 CACCGCACACAAGCCAAAA 59.859 52.632 0.00 0.00 0.00 2.44
276 280 1.140804 ACCGCACACAAGCCAAAAC 59.859 52.632 0.00 0.00 0.00 2.43
277 281 1.319614 ACCGCACACAAGCCAAAACT 61.320 50.000 0.00 0.00 0.00 2.66
278 282 0.594796 CCGCACACAAGCCAAAACTC 60.595 55.000 0.00 0.00 0.00 3.01
279 283 0.381801 CGCACACAAGCCAAAACTCT 59.618 50.000 0.00 0.00 0.00 3.24
280 284 1.601903 CGCACACAAGCCAAAACTCTA 59.398 47.619 0.00 0.00 0.00 2.43
281 285 2.602217 CGCACACAAGCCAAAACTCTAC 60.602 50.000 0.00 0.00 0.00 2.59
282 286 2.357637 GCACACAAGCCAAAACTCTACA 59.642 45.455 0.00 0.00 0.00 2.74
283 287 3.181491 GCACACAAGCCAAAACTCTACAA 60.181 43.478 0.00 0.00 0.00 2.41
284 288 4.351192 CACACAAGCCAAAACTCTACAAC 58.649 43.478 0.00 0.00 0.00 3.32
285 289 4.096382 CACACAAGCCAAAACTCTACAACT 59.904 41.667 0.00 0.00 0.00 3.16
286 290 4.335594 ACACAAGCCAAAACTCTACAACTC 59.664 41.667 0.00 0.00 0.00 3.01
287 291 3.883489 ACAAGCCAAAACTCTACAACTCC 59.117 43.478 0.00 0.00 0.00 3.85
288 292 3.857157 AGCCAAAACTCTACAACTCCA 57.143 42.857 0.00 0.00 0.00 3.86
289 293 3.744660 AGCCAAAACTCTACAACTCCAG 58.255 45.455 0.00 0.00 0.00 3.86
290 294 2.226674 GCCAAAACTCTACAACTCCAGC 59.773 50.000 0.00 0.00 0.00 4.85
291 295 3.476552 CCAAAACTCTACAACTCCAGCA 58.523 45.455 0.00 0.00 0.00 4.41
292 296 3.251004 CCAAAACTCTACAACTCCAGCAC 59.749 47.826 0.00 0.00 0.00 4.40
293 297 2.841442 AACTCTACAACTCCAGCACC 57.159 50.000 0.00 0.00 0.00 5.01
294 298 2.016905 ACTCTACAACTCCAGCACCT 57.983 50.000 0.00 0.00 0.00 4.00
295 299 1.896465 ACTCTACAACTCCAGCACCTC 59.104 52.381 0.00 0.00 0.00 3.85
296 300 1.205893 CTCTACAACTCCAGCACCTCC 59.794 57.143 0.00 0.00 0.00 4.30
297 301 0.976641 CTACAACTCCAGCACCTCCA 59.023 55.000 0.00 0.00 0.00 3.86
298 302 0.976641 TACAACTCCAGCACCTCCAG 59.023 55.000 0.00 0.00 0.00 3.86
299 303 1.673665 CAACTCCAGCACCTCCAGC 60.674 63.158 0.00 0.00 0.00 4.85
300 304 3.245668 AACTCCAGCACCTCCAGCG 62.246 63.158 0.00 0.00 37.01 5.18
304 308 4.079850 CAGCACCTCCAGCGCTCT 62.080 66.667 7.13 0.00 37.01 4.09
305 309 2.363018 AGCACCTCCAGCGCTCTA 60.363 61.111 7.13 0.00 37.01 2.43
306 310 2.105930 GCACCTCCAGCGCTCTAG 59.894 66.667 7.13 7.88 0.00 2.43
307 311 2.105930 CACCTCCAGCGCTCTAGC 59.894 66.667 7.13 0.00 37.78 3.42
308 312 2.363018 ACCTCCAGCGCTCTAGCA 60.363 61.111 7.13 0.00 42.21 3.49
309 313 1.984570 ACCTCCAGCGCTCTAGCAA 60.985 57.895 7.13 0.00 42.21 3.91
310 314 1.333636 ACCTCCAGCGCTCTAGCAAT 61.334 55.000 7.13 0.00 42.21 3.56
311 315 0.879400 CCTCCAGCGCTCTAGCAATG 60.879 60.000 7.13 0.00 42.21 2.82
312 316 1.497223 CTCCAGCGCTCTAGCAATGC 61.497 60.000 7.13 0.00 42.21 3.56
313 317 1.523258 CCAGCGCTCTAGCAATGCT 60.523 57.895 13.92 13.92 43.41 3.79
314 318 1.497223 CCAGCGCTCTAGCAATGCTC 61.497 60.000 12.53 0.00 40.44 4.26
315 319 1.227497 AGCGCTCTAGCAATGCTCC 60.227 57.895 12.53 0.00 40.44 4.70
316 320 1.522355 GCGCTCTAGCAATGCTCCA 60.522 57.895 12.53 0.00 40.44 3.86
317 321 0.883814 GCGCTCTAGCAATGCTCCAT 60.884 55.000 12.53 0.00 40.44 3.41
318 322 1.606480 GCGCTCTAGCAATGCTCCATA 60.606 52.381 12.53 0.00 40.44 2.74
319 323 2.759191 CGCTCTAGCAATGCTCCATAA 58.241 47.619 12.53 0.00 40.44 1.90
320 324 2.478134 CGCTCTAGCAATGCTCCATAAC 59.522 50.000 12.53 0.00 40.44 1.89
321 325 2.478134 GCTCTAGCAATGCTCCATAACG 59.522 50.000 12.53 0.00 40.44 3.18
322 326 2.478134 CTCTAGCAATGCTCCATAACGC 59.522 50.000 12.53 0.00 40.44 4.84
323 327 2.103094 TCTAGCAATGCTCCATAACGCT 59.897 45.455 12.53 0.00 40.44 5.07
324 328 1.755179 AGCAATGCTCCATAACGCTT 58.245 45.000 0.00 0.00 30.62 4.68
325 329 1.402968 AGCAATGCTCCATAACGCTTG 59.597 47.619 0.00 0.00 30.62 4.01
326 330 1.133025 GCAATGCTCCATAACGCTTGT 59.867 47.619 0.00 0.00 0.00 3.16
327 331 2.792542 GCAATGCTCCATAACGCTTGTC 60.793 50.000 0.00 0.00 0.00 3.18
328 332 1.668419 ATGCTCCATAACGCTTGTCC 58.332 50.000 0.00 0.00 0.00 4.02
329 333 0.613260 TGCTCCATAACGCTTGTCCT 59.387 50.000 0.00 0.00 0.00 3.85
330 334 1.291132 GCTCCATAACGCTTGTCCTC 58.709 55.000 0.00 0.00 0.00 3.71
331 335 1.941325 CTCCATAACGCTTGTCCTCC 58.059 55.000 0.00 0.00 0.00 4.30
332 336 0.174845 TCCATAACGCTTGTCCTCCG 59.825 55.000 0.00 0.00 0.00 4.63
333 337 0.108329 CCATAACGCTTGTCCTCCGT 60.108 55.000 0.00 0.00 36.68 4.69
334 338 1.278238 CATAACGCTTGTCCTCCGTC 58.722 55.000 0.00 0.00 33.59 4.79
335 339 1.135083 CATAACGCTTGTCCTCCGTCT 60.135 52.381 0.00 0.00 33.59 4.18
336 340 0.524862 TAACGCTTGTCCTCCGTCTC 59.475 55.000 0.00 0.00 33.59 3.36
337 341 2.156051 AACGCTTGTCCTCCGTCTCC 62.156 60.000 0.00 0.00 33.59 3.71
338 342 2.182030 GCTTGTCCTCCGTCTCCG 59.818 66.667 0.00 0.00 0.00 4.63
339 343 2.637383 GCTTGTCCTCCGTCTCCGT 61.637 63.158 0.00 0.00 0.00 4.69
340 344 1.965219 CTTGTCCTCCGTCTCCGTT 59.035 57.895 0.00 0.00 0.00 4.44
341 345 0.109226 CTTGTCCTCCGTCTCCGTTC 60.109 60.000 0.00 0.00 0.00 3.95
342 346 0.824595 TTGTCCTCCGTCTCCGTTCA 60.825 55.000 0.00 0.00 0.00 3.18
343 347 0.824595 TGTCCTCCGTCTCCGTTCAA 60.825 55.000 0.00 0.00 0.00 2.69
344 348 0.388263 GTCCTCCGTCTCCGTTCAAC 60.388 60.000 0.00 0.00 0.00 3.18
345 349 0.538977 TCCTCCGTCTCCGTTCAACT 60.539 55.000 0.00 0.00 0.00 3.16
346 350 0.109226 CCTCCGTCTCCGTTCAACTC 60.109 60.000 0.00 0.00 0.00 3.01
347 351 0.109226 CTCCGTCTCCGTTCAACTCC 60.109 60.000 0.00 0.00 0.00 3.85
348 352 0.538977 TCCGTCTCCGTTCAACTCCT 60.539 55.000 0.00 0.00 0.00 3.69
349 353 0.388649 CCGTCTCCGTTCAACTCCTG 60.389 60.000 0.00 0.00 0.00 3.86
350 354 0.314302 CGTCTCCGTTCAACTCCTGT 59.686 55.000 0.00 0.00 0.00 4.00
351 355 1.666311 CGTCTCCGTTCAACTCCTGTC 60.666 57.143 0.00 0.00 0.00 3.51
352 356 0.966920 TCTCCGTTCAACTCCTGTCC 59.033 55.000 0.00 0.00 0.00 4.02
353 357 0.969894 CTCCGTTCAACTCCTGTCCT 59.030 55.000 0.00 0.00 0.00 3.85
354 358 0.966920 TCCGTTCAACTCCTGTCCTC 59.033 55.000 0.00 0.00 0.00 3.71
355 359 0.969894 CCGTTCAACTCCTGTCCTCT 59.030 55.000 0.00 0.00 0.00 3.69
356 360 1.337260 CCGTTCAACTCCTGTCCTCTG 60.337 57.143 0.00 0.00 0.00 3.35
357 361 1.613925 CGTTCAACTCCTGTCCTCTGA 59.386 52.381 0.00 0.00 0.00 3.27
358 362 2.608261 CGTTCAACTCCTGTCCTCTGAC 60.608 54.545 0.00 0.00 42.12 3.51
359 363 2.630580 GTTCAACTCCTGTCCTCTGACT 59.369 50.000 0.00 0.00 42.28 3.41
360 364 2.242926 TCAACTCCTGTCCTCTGACTG 58.757 52.381 0.00 0.00 42.28 3.51
361 365 0.972883 AACTCCTGTCCTCTGACTGC 59.027 55.000 0.00 0.00 42.28 4.40
362 366 0.902516 ACTCCTGTCCTCTGACTGCC 60.903 60.000 0.00 0.00 42.28 4.85
363 367 1.610673 TCCTGTCCTCTGACTGCCC 60.611 63.158 0.00 0.00 42.28 5.36
364 368 2.664081 CCTGTCCTCTGACTGCCCC 61.664 68.421 0.00 0.00 42.28 5.80
365 369 2.997315 TGTCCTCTGACTGCCCCG 60.997 66.667 0.00 0.00 42.28 5.73
366 370 4.459089 GTCCTCTGACTGCCCCGC 62.459 72.222 0.00 0.00 38.53 6.13
369 373 4.463879 CTCTGACTGCCCCGCCAG 62.464 72.222 0.00 0.00 38.78 4.85
373 377 4.468689 GACTGCCCCGCCAGGTAC 62.469 72.222 0.00 0.00 37.16 3.34
377 381 4.564110 GCCCCGCCAGGTACCATC 62.564 72.222 15.94 1.15 35.12 3.51
378 382 3.873812 CCCCGCCAGGTACCATCC 61.874 72.222 15.94 0.00 35.12 3.51
379 383 4.235762 CCCGCCAGGTACCATCCG 62.236 72.222 15.94 12.45 35.12 4.18
380 384 4.910585 CCGCCAGGTACCATCCGC 62.911 72.222 15.94 8.48 0.00 5.54
381 385 3.849951 CGCCAGGTACCATCCGCT 61.850 66.667 15.94 0.00 0.00 5.52
382 386 2.203070 GCCAGGTACCATCCGCTG 60.203 66.667 15.94 1.78 0.00 5.18
383 387 2.203070 CCAGGTACCATCCGCTGC 60.203 66.667 15.94 0.00 0.00 5.25
384 388 2.735772 CCAGGTACCATCCGCTGCT 61.736 63.158 15.94 0.00 0.00 4.24
385 389 1.399744 CCAGGTACCATCCGCTGCTA 61.400 60.000 15.94 0.00 0.00 3.49
386 390 0.249489 CAGGTACCATCCGCTGCTAC 60.249 60.000 15.94 0.00 0.00 3.58
387 391 0.397254 AGGTACCATCCGCTGCTACT 60.397 55.000 15.94 0.00 0.00 2.57
388 392 1.133575 AGGTACCATCCGCTGCTACTA 60.134 52.381 15.94 0.00 0.00 1.82
389 393 1.893801 GGTACCATCCGCTGCTACTAT 59.106 52.381 7.15 0.00 0.00 2.12
390 394 2.299297 GGTACCATCCGCTGCTACTATT 59.701 50.000 7.15 0.00 0.00 1.73
391 395 2.821991 ACCATCCGCTGCTACTATTC 57.178 50.000 0.00 0.00 0.00 1.75
392 396 2.320781 ACCATCCGCTGCTACTATTCT 58.679 47.619 0.00 0.00 0.00 2.40
393 397 2.297597 ACCATCCGCTGCTACTATTCTC 59.702 50.000 0.00 0.00 0.00 2.87
394 398 2.297315 CCATCCGCTGCTACTATTCTCA 59.703 50.000 0.00 0.00 0.00 3.27
395 399 3.312828 CATCCGCTGCTACTATTCTCAC 58.687 50.000 0.00 0.00 0.00 3.51
396 400 1.681793 TCCGCTGCTACTATTCTCACC 59.318 52.381 0.00 0.00 0.00 4.02
397 401 1.409064 CCGCTGCTACTATTCTCACCA 59.591 52.381 0.00 0.00 0.00 4.17
398 402 2.036475 CCGCTGCTACTATTCTCACCAT 59.964 50.000 0.00 0.00 0.00 3.55
399 403 3.312828 CGCTGCTACTATTCTCACCATC 58.687 50.000 0.00 0.00 0.00 3.51
400 404 3.658709 GCTGCTACTATTCTCACCATCC 58.341 50.000 0.00 0.00 0.00 3.51
401 405 3.556004 GCTGCTACTATTCTCACCATCCC 60.556 52.174 0.00 0.00 0.00 3.85
402 406 2.972713 TGCTACTATTCTCACCATCCCC 59.027 50.000 0.00 0.00 0.00 4.81
403 407 2.028930 GCTACTATTCTCACCATCCCCG 60.029 54.545 0.00 0.00 0.00 5.73
404 408 2.471815 ACTATTCTCACCATCCCCGA 57.528 50.000 0.00 0.00 0.00 5.14
405 409 2.040178 ACTATTCTCACCATCCCCGAC 58.960 52.381 0.00 0.00 0.00 4.79
406 410 2.039418 CTATTCTCACCATCCCCGACA 58.961 52.381 0.00 0.00 0.00 4.35
407 411 1.285280 ATTCTCACCATCCCCGACAA 58.715 50.000 0.00 0.00 0.00 3.18
408 412 0.323629 TTCTCACCATCCCCGACAAC 59.676 55.000 0.00 0.00 0.00 3.32
409 413 0.544357 TCTCACCATCCCCGACAACT 60.544 55.000 0.00 0.00 0.00 3.16
410 414 0.391661 CTCACCATCCCCGACAACTG 60.392 60.000 0.00 0.00 0.00 3.16
411 415 1.125093 TCACCATCCCCGACAACTGT 61.125 55.000 0.00 0.00 0.00 3.55
412 416 0.250727 CACCATCCCCGACAACTGTT 60.251 55.000 0.00 0.00 0.00 3.16
413 417 0.036306 ACCATCCCCGACAACTGTTC 59.964 55.000 0.00 0.00 0.00 3.18
414 418 1.019278 CCATCCCCGACAACTGTTCG 61.019 60.000 0.00 0.00 0.00 3.95
415 419 0.037697 CATCCCCGACAACTGTTCGA 60.038 55.000 3.60 0.00 0.00 3.71
416 420 0.902531 ATCCCCGACAACTGTTCGAT 59.097 50.000 3.60 0.00 0.00 3.59
417 421 0.037697 TCCCCGACAACTGTTCGATG 60.038 55.000 3.60 0.00 0.00 3.84
418 422 0.037697 CCCCGACAACTGTTCGATGA 60.038 55.000 3.60 0.00 0.00 2.92
419 423 1.606994 CCCCGACAACTGTTCGATGAA 60.607 52.381 3.60 0.00 0.00 2.57
420 424 2.346803 CCCGACAACTGTTCGATGAAT 58.653 47.619 3.60 0.00 0.00 2.57
421 425 2.348666 CCCGACAACTGTTCGATGAATC 59.651 50.000 3.60 0.00 0.00 2.52
422 426 2.993220 CCGACAACTGTTCGATGAATCA 59.007 45.455 3.60 0.00 0.00 2.57
423 427 3.618594 CCGACAACTGTTCGATGAATCAT 59.381 43.478 0.00 0.00 0.00 2.45
424 428 4.493057 CCGACAACTGTTCGATGAATCATG 60.493 45.833 0.00 0.00 0.00 3.07
425 429 4.493057 CGACAACTGTTCGATGAATCATGG 60.493 45.833 0.00 0.00 0.00 3.66
426 430 4.578871 ACAACTGTTCGATGAATCATGGA 58.421 39.130 0.00 1.37 0.00 3.41
427 431 5.003160 ACAACTGTTCGATGAATCATGGAA 58.997 37.500 15.13 15.13 36.52 3.53
428 432 5.122869 ACAACTGTTCGATGAATCATGGAAG 59.877 40.000 18.66 11.81 38.75 3.46
429 433 3.624861 ACTGTTCGATGAATCATGGAAGC 59.375 43.478 18.66 14.12 38.75 3.86
430 434 3.875727 CTGTTCGATGAATCATGGAAGCT 59.124 43.478 18.66 0.00 38.75 3.74
431 435 5.022282 TGTTCGATGAATCATGGAAGCTA 57.978 39.130 18.66 7.82 38.75 3.32
432 436 5.427378 TGTTCGATGAATCATGGAAGCTAA 58.573 37.500 18.66 5.13 38.75 3.09
433 437 5.879777 TGTTCGATGAATCATGGAAGCTAAA 59.120 36.000 18.66 3.07 38.75 1.85
434 438 6.374053 TGTTCGATGAATCATGGAAGCTAAAA 59.626 34.615 18.66 0.00 38.75 1.52
435 439 7.094420 TGTTCGATGAATCATGGAAGCTAAAAA 60.094 33.333 18.66 0.00 38.75 1.94
436 440 7.572523 TCGATGAATCATGGAAGCTAAAAAT 57.427 32.000 5.46 0.00 0.00 1.82
437 441 8.675705 TCGATGAATCATGGAAGCTAAAAATA 57.324 30.769 5.46 0.00 0.00 1.40
438 442 8.777413 TCGATGAATCATGGAAGCTAAAAATAG 58.223 33.333 5.46 0.00 0.00 1.73
439 443 8.562892 CGATGAATCATGGAAGCTAAAAATAGT 58.437 33.333 0.00 0.00 0.00 2.12
442 446 9.023962 TGAATCATGGAAGCTAAAAATAGTTGT 57.976 29.630 0.00 0.00 0.00 3.32
443 447 9.508567 GAATCATGGAAGCTAAAAATAGTTGTC 57.491 33.333 0.00 0.00 0.00 3.18
444 448 7.391148 TCATGGAAGCTAAAAATAGTTGTCC 57.609 36.000 0.00 0.00 0.00 4.02
445 449 6.377146 TCATGGAAGCTAAAAATAGTTGTCCC 59.623 38.462 0.00 0.00 0.00 4.46
446 450 5.887754 TGGAAGCTAAAAATAGTTGTCCCT 58.112 37.500 0.00 0.00 0.00 4.20
447 451 6.311735 TGGAAGCTAAAAATAGTTGTCCCTT 58.688 36.000 0.00 0.00 0.00 3.95
448 452 6.780522 TGGAAGCTAAAAATAGTTGTCCCTTT 59.219 34.615 0.00 0.00 0.00 3.11
449 453 7.289084 TGGAAGCTAAAAATAGTTGTCCCTTTT 59.711 33.333 0.00 0.00 0.00 2.27
450 454 8.148351 GGAAGCTAAAAATAGTTGTCCCTTTTT 58.852 33.333 0.00 0.00 35.58 1.94
451 455 9.193133 GAAGCTAAAAATAGTTGTCCCTTTTTC 57.807 33.333 0.00 0.00 33.95 2.29
452 456 8.478775 AGCTAAAAATAGTTGTCCCTTTTTCT 57.521 30.769 0.00 0.00 33.95 2.52
453 457 8.924303 AGCTAAAAATAGTTGTCCCTTTTTCTT 58.076 29.630 0.00 0.00 33.95 2.52
454 458 9.542462 GCTAAAAATAGTTGTCCCTTTTTCTTT 57.458 29.630 0.00 0.00 33.95 2.52
459 463 7.689446 ATAGTTGTCCCTTTTTCTTTCTAGC 57.311 36.000 0.00 0.00 0.00 3.42
460 464 5.445964 AGTTGTCCCTTTTTCTTTCTAGCA 58.554 37.500 0.00 0.00 0.00 3.49
461 465 5.891551 AGTTGTCCCTTTTTCTTTCTAGCAA 59.108 36.000 0.00 0.00 0.00 3.91
462 466 6.551227 AGTTGTCCCTTTTTCTTTCTAGCAAT 59.449 34.615 0.00 0.00 0.00 3.56
463 467 6.331369 TGTCCCTTTTTCTTTCTAGCAATG 57.669 37.500 0.00 0.00 0.00 2.82
464 468 6.068010 TGTCCCTTTTTCTTTCTAGCAATGA 58.932 36.000 0.00 0.00 0.00 2.57
465 469 6.549364 TGTCCCTTTTTCTTTCTAGCAATGAA 59.451 34.615 0.00 0.00 0.00 2.57
466 470 7.233348 TGTCCCTTTTTCTTTCTAGCAATGAAT 59.767 33.333 0.00 0.00 0.00 2.57
467 471 8.090831 GTCCCTTTTTCTTTCTAGCAATGAATT 58.909 33.333 0.00 0.00 0.00 2.17
468 472 8.650490 TCCCTTTTTCTTTCTAGCAATGAATTT 58.350 29.630 0.00 0.00 0.00 1.82
469 473 8.929746 CCCTTTTTCTTTCTAGCAATGAATTTC 58.070 33.333 0.00 0.00 0.00 2.17
470 474 8.642020 CCTTTTTCTTTCTAGCAATGAATTTCG 58.358 33.333 0.00 0.00 0.00 3.46
471 475 9.398170 CTTTTTCTTTCTAGCAATGAATTTCGA 57.602 29.630 0.00 0.00 0.00 3.71
472 476 9.912634 TTTTTCTTTCTAGCAATGAATTTCGAT 57.087 25.926 0.00 0.00 0.00 3.59
473 477 9.912634 TTTTCTTTCTAGCAATGAATTTCGATT 57.087 25.926 0.00 0.00 0.00 3.34
474 478 9.912634 TTTCTTTCTAGCAATGAATTTCGATTT 57.087 25.926 0.00 0.00 0.00 2.17
475 479 8.900511 TCTTTCTAGCAATGAATTTCGATTTG 57.099 30.769 0.00 0.00 0.00 2.32
476 480 8.729756 TCTTTCTAGCAATGAATTTCGATTTGA 58.270 29.630 9.44 0.00 0.00 2.69
477 481 9.345517 CTTTCTAGCAATGAATTTCGATTTGAA 57.654 29.630 9.44 0.00 33.85 2.69
478 482 8.900511 TTCTAGCAATGAATTTCGATTTGAAG 57.099 30.769 9.44 6.76 37.99 3.02
479 483 8.044060 TCTAGCAATGAATTTCGATTTGAAGT 57.956 30.769 9.44 0.00 37.99 3.01
480 484 9.161629 TCTAGCAATGAATTTCGATTTGAAGTA 57.838 29.630 9.44 0.73 37.99 2.24
481 485 9.214953 CTAGCAATGAATTTCGATTTGAAGTAC 57.785 33.333 9.44 0.00 37.99 2.73
482 486 7.592938 AGCAATGAATTTCGATTTGAAGTACA 58.407 30.769 0.00 0.00 37.99 2.90
483 487 8.246180 AGCAATGAATTTCGATTTGAAGTACAT 58.754 29.630 0.00 0.00 37.99 2.29
484 488 9.502145 GCAATGAATTTCGATTTGAAGTACATA 57.498 29.630 0.00 0.00 37.99 2.29
503 507 9.751542 AGTACATATACAAGAAGTATGTTGAGC 57.248 33.333 0.00 0.00 43.20 4.26
504 508 8.979574 GTACATATACAAGAAGTATGTTGAGCC 58.020 37.037 3.00 0.00 43.20 4.70
505 509 7.796054 ACATATACAAGAAGTATGTTGAGCCT 58.204 34.615 0.00 0.00 43.20 4.58
506 510 8.267894 ACATATACAAGAAGTATGTTGAGCCTT 58.732 33.333 0.00 0.00 43.20 4.35
507 511 8.768955 CATATACAAGAAGTATGTTGAGCCTTC 58.231 37.037 0.00 0.00 43.20 3.46
508 512 4.327680 ACAAGAAGTATGTTGAGCCTTCC 58.672 43.478 0.00 0.00 35.10 3.46
509 513 3.252974 AGAAGTATGTTGAGCCTTCCG 57.747 47.619 0.00 0.00 35.10 4.30
510 514 2.832129 AGAAGTATGTTGAGCCTTCCGA 59.168 45.455 0.00 0.00 35.10 4.55
511 515 2.674796 AGTATGTTGAGCCTTCCGAC 57.325 50.000 0.00 0.00 0.00 4.79
512 516 1.135083 AGTATGTTGAGCCTTCCGACG 60.135 52.381 0.00 0.00 0.00 5.12
513 517 0.174845 TATGTTGAGCCTTCCGACGG 59.825 55.000 7.84 7.84 0.00 4.79
519 523 2.586357 GCCTTCCGACGGCTCATC 60.586 66.667 9.66 0.00 44.17 2.92
520 524 2.278857 CCTTCCGACGGCTCATCG 60.279 66.667 9.66 0.00 39.33 3.84
525 529 3.872728 CGACGGCTCATCGGACGA 61.873 66.667 0.00 0.00 40.66 4.20
526 530 2.024871 GACGGCTCATCGGACGAG 59.975 66.667 0.00 0.00 40.66 4.18
527 531 3.471244 GACGGCTCATCGGACGAGG 62.471 68.421 3.02 0.00 40.66 4.63
528 532 3.209812 CGGCTCATCGGACGAGGA 61.210 66.667 8.80 8.80 40.66 3.71
531 535 4.561452 CTCATCGGACGAGGAGGA 57.439 61.111 23.80 7.89 45.79 3.71
532 536 2.326222 CTCATCGGACGAGGAGGAG 58.674 63.158 23.80 12.72 45.79 3.69
533 537 0.464735 CTCATCGGACGAGGAGGAGT 60.465 60.000 23.80 0.00 45.79 3.85
534 538 0.835276 TCATCGGACGAGGAGGAGTA 59.165 55.000 4.86 0.00 31.03 2.59
535 539 0.945813 CATCGGACGAGGAGGAGTAC 59.054 60.000 0.00 0.00 0.00 2.73
536 540 0.838608 ATCGGACGAGGAGGAGTACT 59.161 55.000 0.00 0.00 0.00 2.73
537 541 0.177604 TCGGACGAGGAGGAGTACTC 59.822 60.000 14.87 14.87 45.84 2.59
538 542 0.178533 CGGACGAGGAGGAGTACTCT 59.821 60.000 21.88 8.54 45.83 3.24
539 543 1.670791 GGACGAGGAGGAGTACTCTG 58.329 60.000 21.88 8.18 45.83 3.35
540 544 1.670791 GACGAGGAGGAGTACTCTGG 58.329 60.000 21.88 6.58 45.83 3.86
541 545 0.993470 ACGAGGAGGAGTACTCTGGT 59.007 55.000 21.88 7.21 45.83 4.00
542 546 1.340211 ACGAGGAGGAGTACTCTGGTG 60.340 57.143 21.88 10.07 45.83 4.17
543 547 1.065345 CGAGGAGGAGTACTCTGGTGA 60.065 57.143 21.88 0.00 45.83 4.02
544 548 2.650322 GAGGAGGAGTACTCTGGTGAG 58.350 57.143 21.88 0.00 45.83 3.51
545 549 2.240160 GAGGAGGAGTACTCTGGTGAGA 59.760 54.545 21.88 0.00 45.83 3.27
546 550 2.025699 AGGAGGAGTACTCTGGTGAGAC 60.026 54.545 21.88 3.29 45.83 3.36
547 551 2.291024 GGAGGAGTACTCTGGTGAGACA 60.291 54.545 21.88 0.00 45.83 3.41
548 552 3.422796 GAGGAGTACTCTGGTGAGACAA 58.577 50.000 21.88 0.00 43.14 3.18
549 553 3.158676 AGGAGTACTCTGGTGAGACAAC 58.841 50.000 21.88 1.35 42.73 3.32
550 554 2.891580 GGAGTACTCTGGTGAGACAACA 59.108 50.000 21.88 0.00 42.73 3.33
551 555 3.321111 GGAGTACTCTGGTGAGACAACAA 59.679 47.826 21.88 0.00 42.73 2.83
552 556 4.021016 GGAGTACTCTGGTGAGACAACAAT 60.021 45.833 21.88 0.00 42.73 2.71
553 557 4.887748 AGTACTCTGGTGAGACAACAATG 58.112 43.478 0.00 0.00 42.73 2.82
554 558 3.131709 ACTCTGGTGAGACAACAATGG 57.868 47.619 0.00 0.00 42.73 3.16
555 559 2.439507 ACTCTGGTGAGACAACAATGGT 59.560 45.455 0.00 0.00 42.73 3.55
556 560 2.810274 CTCTGGTGAGACAACAATGGTG 59.190 50.000 0.00 0.00 42.73 4.17
557 561 1.267806 CTGGTGAGACAACAATGGTGC 59.732 52.381 0.00 0.00 27.52 5.01
558 562 1.317613 GGTGAGACAACAATGGTGCA 58.682 50.000 0.00 0.00 0.00 4.57
559 563 1.267806 GGTGAGACAACAATGGTGCAG 59.732 52.381 0.00 0.00 0.00 4.41
560 564 1.267806 GTGAGACAACAATGGTGCAGG 59.732 52.381 0.00 0.00 0.00 4.85
561 565 0.242017 GAGACAACAATGGTGCAGGC 59.758 55.000 0.00 0.00 0.00 4.85
562 566 1.081242 GACAACAATGGTGCAGGCG 60.081 57.895 0.00 0.00 0.00 5.52
563 567 1.514678 GACAACAATGGTGCAGGCGA 61.515 55.000 0.00 0.00 0.00 5.54
564 568 0.895100 ACAACAATGGTGCAGGCGAT 60.895 50.000 0.00 0.00 0.00 4.58
565 569 0.179156 CAACAATGGTGCAGGCGATC 60.179 55.000 0.00 0.00 0.00 3.69
566 570 1.315257 AACAATGGTGCAGGCGATCC 61.315 55.000 0.00 0.00 0.00 3.36
567 571 1.452651 CAATGGTGCAGGCGATCCT 60.453 57.895 0.00 0.00 45.66 3.24
568 572 1.033746 CAATGGTGCAGGCGATCCTT 61.034 55.000 0.00 0.00 41.93 3.36
569 573 1.033746 AATGGTGCAGGCGATCCTTG 61.034 55.000 0.00 0.00 41.93 3.61
570 574 1.913951 ATGGTGCAGGCGATCCTTGA 61.914 55.000 0.00 0.00 41.93 3.02
571 575 1.377202 GGTGCAGGCGATCCTTGAA 60.377 57.895 0.00 0.00 41.93 2.69
572 576 0.749454 GGTGCAGGCGATCCTTGAAT 60.749 55.000 0.00 0.00 41.93 2.57
573 577 1.475034 GGTGCAGGCGATCCTTGAATA 60.475 52.381 0.00 0.00 41.93 1.75
574 578 1.599542 GTGCAGGCGATCCTTGAATAC 59.400 52.381 0.00 0.00 41.93 1.89
575 579 0.861837 GCAGGCGATCCTTGAATACG 59.138 55.000 0.00 0.00 41.93 3.06
576 580 0.861837 CAGGCGATCCTTGAATACGC 59.138 55.000 0.00 0.00 41.93 4.42
578 582 1.853319 GCGATCCTTGAATACGCGG 59.147 57.895 12.47 0.00 39.90 6.46
579 583 0.596600 GCGATCCTTGAATACGCGGA 60.597 55.000 12.47 0.00 39.90 5.54
580 584 1.409412 CGATCCTTGAATACGCGGAG 58.591 55.000 12.47 0.00 0.00 4.63
594 598 2.268920 GGAGCATGCGGAGTGGAA 59.731 61.111 13.01 0.00 0.00 3.53
595 599 1.377202 GGAGCATGCGGAGTGGAAA 60.377 57.895 13.01 0.00 0.00 3.13
596 600 0.749454 GGAGCATGCGGAGTGGAAAT 60.749 55.000 13.01 0.00 0.00 2.17
597 601 0.659957 GAGCATGCGGAGTGGAAATC 59.340 55.000 13.01 0.00 0.00 2.17
598 602 0.254178 AGCATGCGGAGTGGAAATCT 59.746 50.000 13.01 0.00 0.00 2.40
599 603 0.659957 GCATGCGGAGTGGAAATCTC 59.340 55.000 0.00 0.00 0.00 2.75
600 604 2.013563 GCATGCGGAGTGGAAATCTCA 61.014 52.381 0.00 0.00 34.04 3.27
601 605 1.938577 CATGCGGAGTGGAAATCTCAG 59.061 52.381 0.00 0.00 34.04 3.35
602 606 2.388347 GCGGAGTGGAAATCTCAGC 58.612 57.895 2.90 2.90 43.11 4.26
603 607 1.092345 GCGGAGTGGAAATCTCAGCC 61.092 60.000 6.76 0.00 43.50 4.85
604 608 0.807667 CGGAGTGGAAATCTCAGCCG 60.808 60.000 0.00 0.00 34.04 5.52
605 609 0.250513 GGAGTGGAAATCTCAGCCGT 59.749 55.000 0.00 0.00 34.04 5.68
606 610 1.363744 GAGTGGAAATCTCAGCCGTG 58.636 55.000 0.00 0.00 32.79 4.94
607 611 0.674895 AGTGGAAATCTCAGCCGTGC 60.675 55.000 0.00 0.00 0.00 5.34
608 612 0.955428 GTGGAAATCTCAGCCGTGCA 60.955 55.000 0.00 0.00 0.00 4.57
609 613 0.250684 TGGAAATCTCAGCCGTGCAA 60.251 50.000 0.00 0.00 0.00 4.08
610 614 0.449388 GGAAATCTCAGCCGTGCAAG 59.551 55.000 0.00 0.00 0.00 4.01
611 615 0.449388 GAAATCTCAGCCGTGCAAGG 59.551 55.000 15.06 15.06 0.00 3.61
612 616 0.962356 AAATCTCAGCCGTGCAAGGG 60.962 55.000 20.72 10.75 46.87 3.95
619 623 2.676121 CCGTGCAAGGGCCATGAA 60.676 61.111 13.93 0.00 40.13 2.57
620 624 2.274645 CCGTGCAAGGGCCATGAAA 61.275 57.895 13.93 0.00 40.13 2.69
621 625 1.664873 CGTGCAAGGGCCATGAAAA 59.335 52.632 13.93 0.00 40.13 2.29
622 626 0.667184 CGTGCAAGGGCCATGAAAAC 60.667 55.000 13.93 6.29 40.13 2.43
623 627 0.667184 GTGCAAGGGCCATGAAAACG 60.667 55.000 13.93 0.00 40.13 3.60
624 628 1.079888 GCAAGGGCCATGAAAACGG 60.080 57.895 13.93 0.00 0.00 4.44
629 633 4.128388 GCCATGAAAACGGCCGGG 62.128 66.667 31.76 19.86 42.82 5.73
630 634 3.448340 CCATGAAAACGGCCGGGG 61.448 66.667 31.76 14.41 0.00 5.73
631 635 2.675075 CATGAAAACGGCCGGGGT 60.675 61.111 31.76 13.83 0.00 4.95
632 636 2.360726 ATGAAAACGGCCGGGGTC 60.361 61.111 31.76 22.14 0.00 4.46
664 668 3.436055 GCACCAAATGCGGCGGTA 61.436 61.111 9.78 0.00 46.55 4.02
665 669 2.483288 CACCAAATGCGGCGGTAC 59.517 61.111 9.78 0.00 0.00 3.34
680 684 4.511246 TACGCTCCCCGGACCGAT 62.511 66.667 17.49 0.00 42.52 4.18
682 686 4.587189 CGCTCCCCGGACCGATTC 62.587 72.222 17.49 0.00 0.00 2.52
683 687 4.587189 GCTCCCCGGACCGATTCG 62.587 72.222 17.49 0.00 0.00 3.34
693 697 3.622826 CCGATTCGGCCCGGGTAT 61.623 66.667 24.63 10.79 41.17 2.73
694 698 2.424302 CGATTCGGCCCGGGTATT 59.576 61.111 24.63 4.51 0.00 1.89
695 699 1.227734 CGATTCGGCCCGGGTATTT 60.228 57.895 24.63 3.26 0.00 1.40
696 700 1.226030 CGATTCGGCCCGGGTATTTC 61.226 60.000 24.63 12.03 0.00 2.17
697 701 0.887836 GATTCGGCCCGGGTATTTCC 60.888 60.000 24.63 13.57 0.00 3.13
714 718 3.415087 CCAGCCAGGGGAAGGAGG 61.415 72.222 0.00 0.00 0.00 4.30
715 719 3.415087 CAGCCAGGGGAAGGAGGG 61.415 72.222 0.00 0.00 0.00 4.30
716 720 4.767892 AGCCAGGGGAAGGAGGGG 62.768 72.222 0.00 0.00 0.00 4.79
718 722 4.038804 CCAGGGGAAGGAGGGGGA 62.039 72.222 0.00 0.00 0.00 4.81
719 723 2.378522 CAGGGGAAGGAGGGGGAT 59.621 66.667 0.00 0.00 0.00 3.85
720 724 1.772156 CAGGGGAAGGAGGGGGATC 60.772 68.421 0.00 0.00 0.00 3.36
721 725 2.450699 GGGGAAGGAGGGGGATCC 60.451 72.222 1.92 1.92 39.89 3.36
741 745 1.041437 CGAGAGGATCCCTGGTTACC 58.959 60.000 8.55 0.00 31.76 2.85
742 746 1.688311 CGAGAGGATCCCTGGTTACCA 60.688 57.143 8.55 3.29 31.76 3.25
743 747 2.478292 GAGAGGATCCCTGGTTACCAA 58.522 52.381 8.55 0.00 31.76 3.67
744 748 2.844348 GAGAGGATCCCTGGTTACCAAA 59.156 50.000 8.55 0.00 31.76 3.28
745 749 3.459969 GAGAGGATCCCTGGTTACCAAAT 59.540 47.826 8.55 0.00 31.76 2.32
746 750 3.203040 AGAGGATCCCTGGTTACCAAATG 59.797 47.826 8.55 0.00 31.76 2.32
747 751 3.197983 AGGATCCCTGGTTACCAAATGA 58.802 45.455 8.55 2.60 30.80 2.57
748 752 3.053619 AGGATCCCTGGTTACCAAATGAC 60.054 47.826 8.55 0.00 30.80 3.06
749 753 3.308832 GGATCCCTGGTTACCAAATGACA 60.309 47.826 5.31 0.00 30.80 3.58
750 754 4.536765 GATCCCTGGTTACCAAATGACAT 58.463 43.478 5.31 0.00 30.80 3.06
760 764 6.381801 GTTACCAAATGACATGGAGAAACAG 58.618 40.000 1.99 0.00 40.56 3.16
761 765 4.728772 ACCAAATGACATGGAGAAACAGA 58.271 39.130 1.99 0.00 40.56 3.41
771 775 0.861837 GAGAAACAGACACAGCACGG 59.138 55.000 0.00 0.00 0.00 4.94
784 788 0.323360 AGCACGGCTCTCTCTCTCTT 60.323 55.000 0.00 0.00 30.62 2.85
793 797 4.273318 GCTCTCTCTCTCTTTCTCTCCTT 58.727 47.826 0.00 0.00 0.00 3.36
797 801 2.096248 TCTCTCTTTCTCTCCTTCGCC 58.904 52.381 0.00 0.00 0.00 5.54
799 803 1.546476 TCTCTTTCTCTCCTTCGCCAC 59.454 52.381 0.00 0.00 0.00 5.01
807 811 3.716006 CCTTCGCCACAGTGCACG 61.716 66.667 12.01 9.15 0.00 5.34
876 880 4.326826 GTGTCTTCAACTCCAATCCATCA 58.673 43.478 0.00 0.00 0.00 3.07
879 883 4.394300 GTCTTCAACTCCAATCCATCACTG 59.606 45.833 0.00 0.00 0.00 3.66
938 960 2.091541 CTCACTCACTCACTCCTCTCC 58.908 57.143 0.00 0.00 0.00 3.71
939 961 0.808125 CACTCACTCACTCCTCTCCG 59.192 60.000 0.00 0.00 0.00 4.63
940 962 0.402504 ACTCACTCACTCCTCTCCGT 59.597 55.000 0.00 0.00 0.00 4.69
941 963 1.091537 CTCACTCACTCCTCTCCGTC 58.908 60.000 0.00 0.00 0.00 4.79
942 964 0.693622 TCACTCACTCCTCTCCGTCT 59.306 55.000 0.00 0.00 0.00 4.18
943 965 1.091537 CACTCACTCCTCTCCGTCTC 58.908 60.000 0.00 0.00 0.00 3.36
944 966 0.988832 ACTCACTCCTCTCCGTCTCT 59.011 55.000 0.00 0.00 0.00 3.10
945 967 1.065709 ACTCACTCCTCTCCGTCTCTC 60.066 57.143 0.00 0.00 0.00 3.20
989 1027 4.012895 CACGCACGCTTCCACCAC 62.013 66.667 0.00 0.00 0.00 4.16
997 1035 2.116238 ACGCTTCCACCACATATACCT 58.884 47.619 0.00 0.00 0.00 3.08
1076 1120 2.750948 ACCGATCGCCATTACATACAC 58.249 47.619 10.32 0.00 0.00 2.90
1081 1135 0.812014 CGCCATTACATACACCGGCA 60.812 55.000 0.00 0.00 39.56 5.69
1098 1163 0.460987 GCATTGCCTAGCTCGTCAGT 60.461 55.000 0.00 0.00 0.00 3.41
1099 1164 1.202417 GCATTGCCTAGCTCGTCAGTA 60.202 52.381 0.00 0.00 0.00 2.74
1373 1739 2.045340 GGCAACAGGTATGGCCGT 60.045 61.111 1.35 1.35 43.70 5.68
1418 1844 2.153366 AATTTTGCACCGCAGAAAGG 57.847 45.000 0.00 0.00 40.61 3.11
1424 1850 1.452145 GCACCGCAGAAAGGTTTGGA 61.452 55.000 0.00 0.00 40.59 3.53
1427 1853 0.890996 CCGCAGAAAGGTTTGGAGCT 60.891 55.000 0.00 0.00 34.43 4.09
1575 2034 4.279043 GGCCACGCACAAACCCAC 62.279 66.667 0.00 0.00 0.00 4.61
1765 2233 2.819552 GAACGCGGCGGCATTGTAT 61.820 57.895 27.37 0.00 39.92 2.29
1786 2254 2.613506 CCGGTTCTGCGGTGGAAAC 61.614 63.158 0.00 0.00 0.00 2.78
1976 2450 2.034066 TGCTACACTGGGCCAAGC 59.966 61.111 18.84 18.84 0.00 4.01
2020 2521 1.135139 GAGTATGAGTTCTCGCTGCCA 59.865 52.381 0.00 0.00 0.00 4.92
2078 2579 5.357257 TCAACTTGGAACACTACTTCTGAC 58.643 41.667 0.00 0.00 39.29 3.51
2079 2580 5.105106 TCAACTTGGAACACTACTTCTGACA 60.105 40.000 0.00 0.00 39.29 3.58
2252 2756 9.722056 GCTGAAAATCATAGTTAAATTCGTCAT 57.278 29.630 0.00 0.00 0.00 3.06
2428 2935 0.248012 TTGTTCTATCAGGCGGCGAA 59.752 50.000 12.98 0.00 0.00 4.70
2643 3150 3.436704 CCTAACTGAATGTGCAATGACGT 59.563 43.478 0.00 0.00 0.00 4.34
3182 4106 4.479786 ACAGCTAGTTCTCCAGATTTCC 57.520 45.455 0.00 0.00 0.00 3.13
3248 4174 1.280457 GTCCCTCACCTCCATGTCTT 58.720 55.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.825812 GCTTTTGCGATCCATACGG 57.174 52.632 0.00 0.00 34.86 4.02
19 20 1.173913 GCCCACGTTAGATGGCTTTT 58.826 50.000 0.00 0.00 40.77 2.27
60 61 2.822701 GGGGAAATCGTGTCCGGC 60.823 66.667 0.00 0.00 35.86 6.13
67 68 0.391528 CGGTTTACGGGGGAAATCGT 60.392 55.000 0.00 0.00 42.55 3.73
104 108 0.035739 TGTCCGTACTCCCAAAAGCC 59.964 55.000 0.00 0.00 0.00 4.35
105 109 1.154197 GTGTCCGTACTCCCAAAAGC 58.846 55.000 0.00 0.00 0.00 3.51
106 110 1.425412 CGTGTCCGTACTCCCAAAAG 58.575 55.000 0.00 0.00 0.00 2.27
108 112 1.005867 GCGTGTCCGTACTCCCAAA 60.006 57.895 0.00 0.00 36.15 3.28
109 113 2.652530 GCGTGTCCGTACTCCCAA 59.347 61.111 0.00 0.00 36.15 4.12
235 239 2.642254 TAGCCGAGGTGGTGGAACG 61.642 63.158 0.00 0.00 41.21 3.95
236 240 1.079336 GTAGCCGAGGTGGTGGAAC 60.079 63.158 0.00 0.00 41.21 3.62
237 241 2.288025 GGTAGCCGAGGTGGTGGAA 61.288 63.158 0.00 0.00 41.21 3.53
238 242 2.682494 GGTAGCCGAGGTGGTGGA 60.682 66.667 0.00 0.00 41.21 4.02
239 243 3.000819 TGGTAGCCGAGGTGGTGG 61.001 66.667 0.00 0.00 41.21 4.61
240 244 2.264794 GTGGTAGCCGAGGTGGTG 59.735 66.667 0.00 0.00 41.21 4.17
241 245 2.203728 TGTGGTAGCCGAGGTGGT 60.204 61.111 0.00 0.00 41.21 4.16
242 246 2.264794 GTGTGGTAGCCGAGGTGG 59.735 66.667 0.00 0.00 42.50 4.61
243 247 2.264794 GGTGTGGTAGCCGAGGTG 59.735 66.667 0.00 0.00 0.00 4.00
249 253 3.047877 GTGTGCGGTGTGGTAGCC 61.048 66.667 0.00 0.00 0.00 3.93
250 254 1.841663 CTTGTGTGCGGTGTGGTAGC 61.842 60.000 0.00 0.00 0.00 3.58
251 255 1.841663 GCTTGTGTGCGGTGTGGTAG 61.842 60.000 0.00 0.00 0.00 3.18
252 256 1.890041 GCTTGTGTGCGGTGTGGTA 60.890 57.895 0.00 0.00 0.00 3.25
253 257 3.209097 GCTTGTGTGCGGTGTGGT 61.209 61.111 0.00 0.00 0.00 4.16
254 258 3.964875 GGCTTGTGTGCGGTGTGG 61.965 66.667 0.00 0.00 0.00 4.17
255 259 2.276863 TTTGGCTTGTGTGCGGTGTG 62.277 55.000 0.00 0.00 0.00 3.82
256 260 1.599606 TTTTGGCTTGTGTGCGGTGT 61.600 50.000 0.00 0.00 0.00 4.16
257 261 1.140589 TTTTGGCTTGTGTGCGGTG 59.859 52.632 0.00 0.00 0.00 4.94
258 262 1.140804 GTTTTGGCTTGTGTGCGGT 59.859 52.632 0.00 0.00 0.00 5.68
259 263 0.594796 GAGTTTTGGCTTGTGTGCGG 60.595 55.000 0.00 0.00 0.00 5.69
260 264 0.381801 AGAGTTTTGGCTTGTGTGCG 59.618 50.000 0.00 0.00 0.00 5.34
261 265 2.357637 TGTAGAGTTTTGGCTTGTGTGC 59.642 45.455 0.00 0.00 0.00 4.57
262 266 4.096382 AGTTGTAGAGTTTTGGCTTGTGTG 59.904 41.667 0.00 0.00 0.00 3.82
263 267 4.270008 AGTTGTAGAGTTTTGGCTTGTGT 58.730 39.130 0.00 0.00 0.00 3.72
264 268 4.261197 GGAGTTGTAGAGTTTTGGCTTGTG 60.261 45.833 0.00 0.00 0.00 3.33
265 269 3.883489 GGAGTTGTAGAGTTTTGGCTTGT 59.117 43.478 0.00 0.00 0.00 3.16
266 270 3.882888 TGGAGTTGTAGAGTTTTGGCTTG 59.117 43.478 0.00 0.00 0.00 4.01
267 271 4.137543 CTGGAGTTGTAGAGTTTTGGCTT 58.862 43.478 0.00 0.00 0.00 4.35
268 272 3.744660 CTGGAGTTGTAGAGTTTTGGCT 58.255 45.455 0.00 0.00 0.00 4.75
269 273 2.226674 GCTGGAGTTGTAGAGTTTTGGC 59.773 50.000 0.00 0.00 0.00 4.52
270 274 3.251004 GTGCTGGAGTTGTAGAGTTTTGG 59.749 47.826 0.00 0.00 0.00 3.28
271 275 3.251004 GGTGCTGGAGTTGTAGAGTTTTG 59.749 47.826 0.00 0.00 0.00 2.44
272 276 3.136626 AGGTGCTGGAGTTGTAGAGTTTT 59.863 43.478 0.00 0.00 0.00 2.43
273 277 2.706190 AGGTGCTGGAGTTGTAGAGTTT 59.294 45.455 0.00 0.00 0.00 2.66
274 278 2.300437 GAGGTGCTGGAGTTGTAGAGTT 59.700 50.000 0.00 0.00 0.00 3.01
275 279 1.896465 GAGGTGCTGGAGTTGTAGAGT 59.104 52.381 0.00 0.00 0.00 3.24
276 280 1.205893 GGAGGTGCTGGAGTTGTAGAG 59.794 57.143 0.00 0.00 0.00 2.43
277 281 1.267121 GGAGGTGCTGGAGTTGTAGA 58.733 55.000 0.00 0.00 0.00 2.59
278 282 0.976641 TGGAGGTGCTGGAGTTGTAG 59.023 55.000 0.00 0.00 0.00 2.74
279 283 0.976641 CTGGAGGTGCTGGAGTTGTA 59.023 55.000 0.00 0.00 0.00 2.41
280 284 1.757306 CTGGAGGTGCTGGAGTTGT 59.243 57.895 0.00 0.00 0.00 3.32
281 285 1.673665 GCTGGAGGTGCTGGAGTTG 60.674 63.158 0.00 0.00 0.00 3.16
282 286 2.753029 GCTGGAGGTGCTGGAGTT 59.247 61.111 0.00 0.00 0.00 3.01
283 287 3.699894 CGCTGGAGGTGCTGGAGT 61.700 66.667 0.00 0.00 0.00 3.85
290 294 2.105930 GCTAGAGCGCTGGAGGTG 59.894 66.667 18.48 0.00 0.00 4.00
291 295 1.333636 ATTGCTAGAGCGCTGGAGGT 61.334 55.000 18.48 0.00 45.83 3.85
292 296 0.879400 CATTGCTAGAGCGCTGGAGG 60.879 60.000 18.48 2.92 45.83 4.30
293 297 1.497223 GCATTGCTAGAGCGCTGGAG 61.497 60.000 18.48 13.26 45.83 3.86
294 298 1.522355 GCATTGCTAGAGCGCTGGA 60.522 57.895 18.48 0.00 45.83 3.86
295 299 1.497223 GAGCATTGCTAGAGCGCTGG 61.497 60.000 18.48 5.88 45.83 4.85
296 300 1.497223 GGAGCATTGCTAGAGCGCTG 61.497 60.000 18.48 0.22 45.83 5.18
297 301 1.227497 GGAGCATTGCTAGAGCGCT 60.227 57.895 11.27 11.27 45.83 5.92
298 302 0.883814 ATGGAGCATTGCTAGAGCGC 60.884 55.000 11.96 0.00 45.83 5.92
299 303 2.445565 TATGGAGCATTGCTAGAGCG 57.554 50.000 11.96 0.00 45.83 5.03
300 304 2.478134 CGTTATGGAGCATTGCTAGAGC 59.522 50.000 11.96 0.00 39.88 4.09
301 305 2.478134 GCGTTATGGAGCATTGCTAGAG 59.522 50.000 11.96 0.77 39.88 2.43
302 306 2.103094 AGCGTTATGGAGCATTGCTAGA 59.897 45.455 11.96 1.02 39.88 2.43
303 307 2.487934 AGCGTTATGGAGCATTGCTAG 58.512 47.619 11.96 0.00 39.88 3.42
304 308 2.613595 CAAGCGTTATGGAGCATTGCTA 59.386 45.455 11.96 0.00 39.88 3.49
305 309 1.402968 CAAGCGTTATGGAGCATTGCT 59.597 47.619 11.79 11.79 43.88 3.91
306 310 1.133025 ACAAGCGTTATGGAGCATTGC 59.867 47.619 0.00 0.00 35.48 3.56
307 311 2.223340 GGACAAGCGTTATGGAGCATTG 60.223 50.000 0.00 0.00 35.48 2.82
308 312 2.017049 GGACAAGCGTTATGGAGCATT 58.983 47.619 0.00 0.00 35.48 3.56
309 313 1.210478 AGGACAAGCGTTATGGAGCAT 59.790 47.619 0.00 0.00 35.48 3.79
310 314 0.613260 AGGACAAGCGTTATGGAGCA 59.387 50.000 0.00 0.00 35.48 4.26
311 315 1.291132 GAGGACAAGCGTTATGGAGC 58.709 55.000 0.00 0.00 0.00 4.70
312 316 1.802880 CGGAGGACAAGCGTTATGGAG 60.803 57.143 0.00 0.00 0.00 3.86
313 317 0.174845 CGGAGGACAAGCGTTATGGA 59.825 55.000 0.00 0.00 0.00 3.41
314 318 0.108329 ACGGAGGACAAGCGTTATGG 60.108 55.000 0.00 0.00 0.00 2.74
315 319 1.135083 AGACGGAGGACAAGCGTTATG 60.135 52.381 0.00 0.00 0.00 1.90
316 320 1.134560 GAGACGGAGGACAAGCGTTAT 59.865 52.381 0.00 0.00 0.00 1.89
317 321 0.524862 GAGACGGAGGACAAGCGTTA 59.475 55.000 0.00 0.00 0.00 3.18
318 322 1.289380 GAGACGGAGGACAAGCGTT 59.711 57.895 0.00 0.00 0.00 4.84
319 323 2.637383 GGAGACGGAGGACAAGCGT 61.637 63.158 0.00 0.00 0.00 5.07
320 324 2.182030 GGAGACGGAGGACAAGCG 59.818 66.667 0.00 0.00 0.00 4.68
332 336 1.336980 GGACAGGAGTTGAACGGAGAC 60.337 57.143 0.00 0.00 0.00 3.36
333 337 0.966920 GGACAGGAGTTGAACGGAGA 59.033 55.000 0.00 0.00 0.00 3.71
334 338 0.969894 AGGACAGGAGTTGAACGGAG 59.030 55.000 0.00 0.00 0.00 4.63
335 339 0.966920 GAGGACAGGAGTTGAACGGA 59.033 55.000 0.00 0.00 0.00 4.69
336 340 0.969894 AGAGGACAGGAGTTGAACGG 59.030 55.000 0.00 0.00 0.00 4.44
337 341 1.613925 TCAGAGGACAGGAGTTGAACG 59.386 52.381 0.00 0.00 0.00 3.95
338 342 2.630580 AGTCAGAGGACAGGAGTTGAAC 59.369 50.000 0.00 0.00 46.80 3.18
339 343 2.630098 CAGTCAGAGGACAGGAGTTGAA 59.370 50.000 0.00 0.00 46.80 2.69
340 344 2.242926 CAGTCAGAGGACAGGAGTTGA 58.757 52.381 0.00 0.00 46.80 3.18
341 345 1.337635 GCAGTCAGAGGACAGGAGTTG 60.338 57.143 0.00 0.00 46.80 3.16
342 346 0.972883 GCAGTCAGAGGACAGGAGTT 59.027 55.000 0.00 0.00 46.80 3.01
343 347 0.902516 GGCAGTCAGAGGACAGGAGT 60.903 60.000 0.00 0.00 46.80 3.85
344 348 1.612395 GGGCAGTCAGAGGACAGGAG 61.612 65.000 0.00 0.00 46.80 3.69
345 349 1.610673 GGGCAGTCAGAGGACAGGA 60.611 63.158 0.00 0.00 46.80 3.86
346 350 2.664081 GGGGCAGTCAGAGGACAGG 61.664 68.421 0.00 0.00 46.80 4.00
347 351 2.985456 GGGGCAGTCAGAGGACAG 59.015 66.667 0.00 0.00 46.80 3.51
348 352 2.997315 CGGGGCAGTCAGAGGACA 60.997 66.667 0.00 0.00 46.80 4.02
349 353 4.459089 GCGGGGCAGTCAGAGGAC 62.459 72.222 0.00 0.00 44.66 3.85
352 356 4.463879 CTGGCGGGGCAGTCAGAG 62.464 72.222 13.55 0.00 46.05 3.35
356 360 4.468689 GTACCTGGCGGGGCAGTC 62.469 72.222 18.49 7.34 40.03 3.51
360 364 4.564110 GATGGTACCTGGCGGGGC 62.564 72.222 18.49 8.99 40.03 5.80
361 365 3.873812 GGATGGTACCTGGCGGGG 61.874 72.222 18.49 6.00 40.03 5.73
362 366 4.235762 CGGATGGTACCTGGCGGG 62.236 72.222 14.36 11.83 41.89 6.13
363 367 4.910585 GCGGATGGTACCTGGCGG 62.911 72.222 14.36 7.78 0.00 6.13
364 368 3.849951 AGCGGATGGTACCTGGCG 61.850 66.667 14.36 1.05 0.00 5.69
365 369 2.203070 CAGCGGATGGTACCTGGC 60.203 66.667 14.36 10.81 0.00 4.85
366 370 1.399744 TAGCAGCGGATGGTACCTGG 61.400 60.000 14.36 0.00 40.89 4.45
367 371 2.124293 TAGCAGCGGATGGTACCTG 58.876 57.895 14.36 2.60 40.89 4.00
368 372 4.699192 TAGCAGCGGATGGTACCT 57.301 55.556 14.36 0.00 40.89 3.08
371 375 3.497332 AGAATAGTAGCAGCGGATGGTA 58.503 45.455 0.37 0.37 40.89 3.25
372 376 2.297597 GAGAATAGTAGCAGCGGATGGT 59.702 50.000 2.68 2.68 43.56 3.55
373 377 2.297315 TGAGAATAGTAGCAGCGGATGG 59.703 50.000 0.00 0.00 0.00 3.51
374 378 3.312828 GTGAGAATAGTAGCAGCGGATG 58.687 50.000 0.00 0.00 0.00 3.51
375 379 2.297597 GGTGAGAATAGTAGCAGCGGAT 59.702 50.000 0.00 0.00 0.00 4.18
376 380 1.681793 GGTGAGAATAGTAGCAGCGGA 59.318 52.381 0.00 0.00 0.00 5.54
377 381 1.409064 TGGTGAGAATAGTAGCAGCGG 59.591 52.381 0.00 0.00 0.00 5.52
378 382 2.871182 TGGTGAGAATAGTAGCAGCG 57.129 50.000 0.00 0.00 0.00 5.18
379 383 3.556004 GGGATGGTGAGAATAGTAGCAGC 60.556 52.174 0.00 0.00 0.00 5.25
380 384 3.007398 GGGGATGGTGAGAATAGTAGCAG 59.993 52.174 0.00 0.00 0.00 4.24
381 385 2.972713 GGGGATGGTGAGAATAGTAGCA 59.027 50.000 0.00 0.00 0.00 3.49
382 386 2.028930 CGGGGATGGTGAGAATAGTAGC 60.029 54.545 0.00 0.00 0.00 3.58
383 387 3.256136 GTCGGGGATGGTGAGAATAGTAG 59.744 52.174 0.00 0.00 0.00 2.57
384 388 3.228453 GTCGGGGATGGTGAGAATAGTA 58.772 50.000 0.00 0.00 0.00 1.82
385 389 2.040178 GTCGGGGATGGTGAGAATAGT 58.960 52.381 0.00 0.00 0.00 2.12
386 390 2.039418 TGTCGGGGATGGTGAGAATAG 58.961 52.381 0.00 0.00 0.00 1.73
387 391 2.168458 TGTCGGGGATGGTGAGAATA 57.832 50.000 0.00 0.00 0.00 1.75
388 392 1.065418 GTTGTCGGGGATGGTGAGAAT 60.065 52.381 0.00 0.00 0.00 2.40
389 393 0.323629 GTTGTCGGGGATGGTGAGAA 59.676 55.000 0.00 0.00 0.00 2.87
390 394 0.544357 AGTTGTCGGGGATGGTGAGA 60.544 55.000 0.00 0.00 0.00 3.27
391 395 0.391661 CAGTTGTCGGGGATGGTGAG 60.392 60.000 0.00 0.00 0.00 3.51
392 396 1.125093 ACAGTTGTCGGGGATGGTGA 61.125 55.000 0.00 0.00 0.00 4.02
393 397 0.250727 AACAGTTGTCGGGGATGGTG 60.251 55.000 0.00 0.00 0.00 4.17
394 398 0.036306 GAACAGTTGTCGGGGATGGT 59.964 55.000 0.00 0.00 0.00 3.55
395 399 1.019278 CGAACAGTTGTCGGGGATGG 61.019 60.000 0.00 0.00 0.00 3.51
396 400 0.037697 TCGAACAGTTGTCGGGGATG 60.038 55.000 0.00 0.00 0.00 3.51
397 401 0.902531 ATCGAACAGTTGTCGGGGAT 59.097 50.000 0.00 0.00 0.00 3.85
398 402 0.037697 CATCGAACAGTTGTCGGGGA 60.038 55.000 0.00 0.00 0.00 4.81
399 403 0.037697 TCATCGAACAGTTGTCGGGG 60.038 55.000 0.00 0.00 0.00 5.73
400 404 1.790755 TTCATCGAACAGTTGTCGGG 58.209 50.000 0.00 0.00 0.00 5.14
401 405 2.993220 TGATTCATCGAACAGTTGTCGG 59.007 45.455 0.00 0.00 0.00 4.79
402 406 4.493057 CCATGATTCATCGAACAGTTGTCG 60.493 45.833 0.00 0.00 0.00 4.35
403 407 4.631377 TCCATGATTCATCGAACAGTTGTC 59.369 41.667 0.00 0.00 0.00 3.18
404 408 4.578871 TCCATGATTCATCGAACAGTTGT 58.421 39.130 0.00 0.00 0.00 3.32
405 409 5.550232 TTCCATGATTCATCGAACAGTTG 57.450 39.130 2.96 0.00 0.00 3.16
406 410 4.095483 GCTTCCATGATTCATCGAACAGTT 59.905 41.667 2.96 0.00 0.00 3.16
407 411 3.624861 GCTTCCATGATTCATCGAACAGT 59.375 43.478 2.96 0.00 0.00 3.55
408 412 3.875727 AGCTTCCATGATTCATCGAACAG 59.124 43.478 2.96 0.00 0.00 3.16
409 413 3.877559 AGCTTCCATGATTCATCGAACA 58.122 40.909 2.96 0.00 0.00 3.18
410 414 5.991328 TTAGCTTCCATGATTCATCGAAC 57.009 39.130 2.96 2.02 0.00 3.95
411 415 7.389803 TTTTTAGCTTCCATGATTCATCGAA 57.610 32.000 6.54 6.54 0.00 3.71
412 416 7.572523 ATTTTTAGCTTCCATGATTCATCGA 57.427 32.000 0.00 0.00 0.00 3.59
413 417 8.562892 ACTATTTTTAGCTTCCATGATTCATCG 58.437 33.333 0.00 0.00 0.00 3.84
416 420 9.023962 ACAACTATTTTTAGCTTCCATGATTCA 57.976 29.630 0.00 0.00 0.00 2.57
417 421 9.508567 GACAACTATTTTTAGCTTCCATGATTC 57.491 33.333 0.00 0.00 0.00 2.52
418 422 8.470002 GGACAACTATTTTTAGCTTCCATGATT 58.530 33.333 0.00 0.00 0.00 2.57
419 423 7.068716 GGGACAACTATTTTTAGCTTCCATGAT 59.931 37.037 0.00 0.00 0.00 2.45
420 424 6.377146 GGGACAACTATTTTTAGCTTCCATGA 59.623 38.462 0.00 0.00 0.00 3.07
421 425 6.378280 AGGGACAACTATTTTTAGCTTCCATG 59.622 38.462 0.00 0.00 0.00 3.66
422 426 6.494059 AGGGACAACTATTTTTAGCTTCCAT 58.506 36.000 0.00 0.00 0.00 3.41
423 427 5.887754 AGGGACAACTATTTTTAGCTTCCA 58.112 37.500 0.00 0.00 0.00 3.53
424 428 6.835819 AAGGGACAACTATTTTTAGCTTCC 57.164 37.500 0.00 0.00 0.00 3.46
425 429 9.193133 GAAAAAGGGACAACTATTTTTAGCTTC 57.807 33.333 0.00 0.00 35.57 3.86
426 430 8.924303 AGAAAAAGGGACAACTATTTTTAGCTT 58.076 29.630 0.00 0.00 35.57 3.74
427 431 8.478775 AGAAAAAGGGACAACTATTTTTAGCT 57.521 30.769 0.00 0.00 35.57 3.32
428 432 9.542462 AAAGAAAAAGGGACAACTATTTTTAGC 57.458 29.630 0.00 0.00 35.57 3.09
433 437 8.577296 GCTAGAAAGAAAAAGGGACAACTATTT 58.423 33.333 0.00 0.00 0.00 1.40
434 438 7.724061 TGCTAGAAAGAAAAAGGGACAACTATT 59.276 33.333 0.00 0.00 0.00 1.73
435 439 7.231467 TGCTAGAAAGAAAAAGGGACAACTAT 58.769 34.615 0.00 0.00 0.00 2.12
436 440 6.597562 TGCTAGAAAGAAAAAGGGACAACTA 58.402 36.000 0.00 0.00 0.00 2.24
437 441 5.445964 TGCTAGAAAGAAAAAGGGACAACT 58.554 37.500 0.00 0.00 0.00 3.16
438 442 5.767816 TGCTAGAAAGAAAAAGGGACAAC 57.232 39.130 0.00 0.00 0.00 3.32
439 443 6.549364 TCATTGCTAGAAAGAAAAAGGGACAA 59.451 34.615 0.00 0.00 0.00 3.18
440 444 6.068010 TCATTGCTAGAAAGAAAAAGGGACA 58.932 36.000 0.00 0.00 0.00 4.02
441 445 6.575162 TCATTGCTAGAAAGAAAAAGGGAC 57.425 37.500 0.00 0.00 0.00 4.46
442 446 7.781324 ATTCATTGCTAGAAAGAAAAAGGGA 57.219 32.000 0.00 0.00 0.00 4.20
443 447 8.837788 AAATTCATTGCTAGAAAGAAAAAGGG 57.162 30.769 0.00 0.00 0.00 3.95
444 448 8.642020 CGAAATTCATTGCTAGAAAGAAAAAGG 58.358 33.333 0.00 0.00 0.00 3.11
445 449 9.398170 TCGAAATTCATTGCTAGAAAGAAAAAG 57.602 29.630 0.00 0.00 0.00 2.27
446 450 9.912634 ATCGAAATTCATTGCTAGAAAGAAAAA 57.087 25.926 0.00 0.00 0.00 1.94
447 451 9.912634 AATCGAAATTCATTGCTAGAAAGAAAA 57.087 25.926 0.00 0.00 0.00 2.29
448 452 9.912634 AAATCGAAATTCATTGCTAGAAAGAAA 57.087 25.926 0.00 0.00 0.00 2.52
449 453 9.345517 CAAATCGAAATTCATTGCTAGAAAGAA 57.654 29.630 0.00 0.00 0.00 2.52
450 454 8.729756 TCAAATCGAAATTCATTGCTAGAAAGA 58.270 29.630 0.00 0.00 0.00 2.52
451 455 8.900511 TCAAATCGAAATTCATTGCTAGAAAG 57.099 30.769 0.00 0.00 0.00 2.62
452 456 9.345517 CTTCAAATCGAAATTCATTGCTAGAAA 57.654 29.630 0.00 0.00 31.71 2.52
453 457 8.514594 ACTTCAAATCGAAATTCATTGCTAGAA 58.485 29.630 0.00 0.00 31.71 2.10
454 458 8.044060 ACTTCAAATCGAAATTCATTGCTAGA 57.956 30.769 0.00 0.00 31.71 2.43
455 459 9.214953 GTACTTCAAATCGAAATTCATTGCTAG 57.785 33.333 0.00 0.00 31.71 3.42
456 460 8.726068 TGTACTTCAAATCGAAATTCATTGCTA 58.274 29.630 0.00 0.00 31.71 3.49
457 461 7.592938 TGTACTTCAAATCGAAATTCATTGCT 58.407 30.769 0.00 0.00 31.71 3.91
458 462 7.795431 TGTACTTCAAATCGAAATTCATTGC 57.205 32.000 0.00 0.00 31.71 3.56
477 481 9.751542 GCTCAACATACTTCTTGTATATGTACT 57.248 33.333 1.08 0.00 39.66 2.73
478 482 8.979574 GGCTCAACATACTTCTTGTATATGTAC 58.020 37.037 0.00 0.00 39.66 2.90
479 483 8.924303 AGGCTCAACATACTTCTTGTATATGTA 58.076 33.333 0.00 0.00 39.66 2.29
480 484 7.796054 AGGCTCAACATACTTCTTGTATATGT 58.204 34.615 0.00 0.00 39.66 2.29
481 485 8.668510 AAGGCTCAACATACTTCTTGTATATG 57.331 34.615 0.00 0.00 39.66 1.78
482 486 7.934120 GGAAGGCTCAACATACTTCTTGTATAT 59.066 37.037 0.00 0.00 39.66 0.86
483 487 7.272978 GGAAGGCTCAACATACTTCTTGTATA 58.727 38.462 0.00 0.00 39.66 1.47
484 488 6.116126 GGAAGGCTCAACATACTTCTTGTAT 58.884 40.000 0.00 0.00 42.18 2.29
485 489 5.488341 GGAAGGCTCAACATACTTCTTGTA 58.512 41.667 0.00 0.00 39.33 2.41
486 490 4.327680 GGAAGGCTCAACATACTTCTTGT 58.672 43.478 0.00 0.00 39.33 3.16
487 491 3.372206 CGGAAGGCTCAACATACTTCTTG 59.628 47.826 0.00 0.00 39.33 3.02
488 492 3.260884 TCGGAAGGCTCAACATACTTCTT 59.739 43.478 0.00 0.00 39.33 2.52
489 493 2.832129 TCGGAAGGCTCAACATACTTCT 59.168 45.455 0.00 0.00 39.33 2.85
490 494 2.930682 GTCGGAAGGCTCAACATACTTC 59.069 50.000 0.00 0.00 38.80 3.01
491 495 2.674177 CGTCGGAAGGCTCAACATACTT 60.674 50.000 0.00 0.00 0.00 2.24
492 496 1.135083 CGTCGGAAGGCTCAACATACT 60.135 52.381 0.00 0.00 0.00 2.12
493 497 1.278238 CGTCGGAAGGCTCAACATAC 58.722 55.000 0.00 0.00 0.00 2.39
494 498 0.174845 CCGTCGGAAGGCTCAACATA 59.825 55.000 4.91 0.00 0.00 2.29
495 499 1.079127 CCGTCGGAAGGCTCAACAT 60.079 57.895 4.91 0.00 0.00 2.71
496 500 2.342279 CCGTCGGAAGGCTCAACA 59.658 61.111 4.91 0.00 0.00 3.33
503 507 2.278857 CGATGAGCCGTCGGAAGG 60.279 66.667 17.49 5.53 38.96 3.46
508 512 3.791928 CTCGTCCGATGAGCCGTCG 62.792 68.421 4.66 9.13 41.82 5.12
509 513 2.024871 CTCGTCCGATGAGCCGTC 59.975 66.667 4.66 0.00 0.00 4.79
510 514 3.518998 CCTCGTCCGATGAGCCGT 61.519 66.667 11.62 0.00 29.93 5.68
511 515 3.187699 CTCCTCGTCCGATGAGCCG 62.188 68.421 11.62 0.60 32.03 5.52
512 516 2.725008 CTCCTCGTCCGATGAGCC 59.275 66.667 11.62 0.00 32.03 4.70
513 517 1.791103 CTCCTCCTCGTCCGATGAGC 61.791 65.000 11.62 0.00 36.16 4.26
514 518 0.464735 ACTCCTCCTCGTCCGATGAG 60.465 60.000 10.29 10.29 36.88 2.90
515 519 0.835276 TACTCCTCCTCGTCCGATGA 59.165 55.000 0.00 0.00 0.00 2.92
516 520 0.945813 GTACTCCTCCTCGTCCGATG 59.054 60.000 0.00 0.00 0.00 3.84
517 521 0.838608 AGTACTCCTCCTCGTCCGAT 59.161 55.000 0.00 0.00 0.00 4.18
518 522 0.177604 GAGTACTCCTCCTCGTCCGA 59.822 60.000 12.13 0.00 33.79 4.55
519 523 0.178533 AGAGTACTCCTCCTCGTCCG 59.821 60.000 19.38 0.00 41.47 4.79
520 524 1.670791 CAGAGTACTCCTCCTCGTCC 58.329 60.000 19.38 0.00 41.47 4.79
521 525 1.065272 ACCAGAGTACTCCTCCTCGTC 60.065 57.143 19.38 0.00 41.47 4.20
522 526 0.993470 ACCAGAGTACTCCTCCTCGT 59.007 55.000 19.38 4.07 41.47 4.18
523 527 1.065345 TCACCAGAGTACTCCTCCTCG 60.065 57.143 19.38 4.01 41.47 4.63
524 528 2.240160 TCTCACCAGAGTACTCCTCCTC 59.760 54.545 19.38 0.00 41.47 3.71
525 529 2.025699 GTCTCACCAGAGTACTCCTCCT 60.026 54.545 19.38 0.00 41.47 3.69
526 530 2.291024 TGTCTCACCAGAGTACTCCTCC 60.291 54.545 19.38 0.00 41.47 4.30
527 531 3.074675 TGTCTCACCAGAGTACTCCTC 57.925 52.381 19.38 0.00 42.66 3.71
528 532 3.158676 GTTGTCTCACCAGAGTACTCCT 58.841 50.000 19.38 4.22 42.66 3.69
529 533 2.891580 TGTTGTCTCACCAGAGTACTCC 59.108 50.000 19.38 2.05 42.66 3.85
530 534 4.585955 TTGTTGTCTCACCAGAGTACTC 57.414 45.455 15.41 15.41 42.66 2.59
531 535 4.262635 CCATTGTTGTCTCACCAGAGTACT 60.263 45.833 0.00 0.00 42.66 2.73
532 536 3.997021 CCATTGTTGTCTCACCAGAGTAC 59.003 47.826 0.00 0.00 42.66 2.73
533 537 3.646162 ACCATTGTTGTCTCACCAGAGTA 59.354 43.478 0.00 0.00 42.66 2.59
534 538 2.439507 ACCATTGTTGTCTCACCAGAGT 59.560 45.455 0.00 0.00 42.66 3.24
535 539 2.810274 CACCATTGTTGTCTCACCAGAG 59.190 50.000 0.00 0.00 43.48 3.35
536 540 2.849942 CACCATTGTTGTCTCACCAGA 58.150 47.619 0.00 0.00 0.00 3.86
537 541 1.267806 GCACCATTGTTGTCTCACCAG 59.732 52.381 0.00 0.00 0.00 4.00
538 542 1.317613 GCACCATTGTTGTCTCACCA 58.682 50.000 0.00 0.00 0.00 4.17
539 543 1.267806 CTGCACCATTGTTGTCTCACC 59.732 52.381 0.00 0.00 0.00 4.02
540 544 1.267806 CCTGCACCATTGTTGTCTCAC 59.732 52.381 0.00 0.00 0.00 3.51
541 545 1.608055 CCTGCACCATTGTTGTCTCA 58.392 50.000 0.00 0.00 0.00 3.27
542 546 0.242017 GCCTGCACCATTGTTGTCTC 59.758 55.000 0.00 0.00 0.00 3.36
543 547 1.518056 CGCCTGCACCATTGTTGTCT 61.518 55.000 0.00 0.00 0.00 3.41
544 548 1.081242 CGCCTGCACCATTGTTGTC 60.081 57.895 0.00 0.00 0.00 3.18
545 549 0.895100 ATCGCCTGCACCATTGTTGT 60.895 50.000 0.00 0.00 0.00 3.32
546 550 0.179156 GATCGCCTGCACCATTGTTG 60.179 55.000 0.00 0.00 0.00 3.33
547 551 1.315257 GGATCGCCTGCACCATTGTT 61.315 55.000 0.00 0.00 0.00 2.83
548 552 1.750399 GGATCGCCTGCACCATTGT 60.750 57.895 0.00 0.00 0.00 2.71
549 553 1.033746 AAGGATCGCCTGCACCATTG 61.034 55.000 0.00 0.00 46.28 2.82
550 554 1.033746 CAAGGATCGCCTGCACCATT 61.034 55.000 0.00 0.00 46.28 3.16
551 555 1.452651 CAAGGATCGCCTGCACCAT 60.453 57.895 0.00 0.00 46.28 3.55
552 556 2.046023 CAAGGATCGCCTGCACCA 60.046 61.111 0.00 0.00 46.28 4.17
553 557 0.749454 ATTCAAGGATCGCCTGCACC 60.749 55.000 0.00 0.00 46.28 5.01
554 558 1.599542 GTATTCAAGGATCGCCTGCAC 59.400 52.381 0.00 0.00 46.28 4.57
555 559 1.806247 CGTATTCAAGGATCGCCTGCA 60.806 52.381 0.00 0.00 46.28 4.41
556 560 0.861837 CGTATTCAAGGATCGCCTGC 59.138 55.000 0.00 0.00 46.28 4.85
557 561 0.861837 GCGTATTCAAGGATCGCCTG 59.138 55.000 0.00 0.00 46.28 4.85
559 563 1.557443 CCGCGTATTCAAGGATCGCC 61.557 60.000 4.92 0.00 43.18 5.54
560 564 0.596600 TCCGCGTATTCAAGGATCGC 60.597 55.000 4.92 0.00 42.78 4.58
561 565 1.409412 CTCCGCGTATTCAAGGATCG 58.591 55.000 4.92 0.00 31.66 3.69
562 566 1.140816 GCTCCGCGTATTCAAGGATC 58.859 55.000 4.92 0.00 31.66 3.36
563 567 0.464036 TGCTCCGCGTATTCAAGGAT 59.536 50.000 4.92 0.00 31.66 3.24
564 568 0.464036 ATGCTCCGCGTATTCAAGGA 59.536 50.000 4.92 0.00 0.00 3.36
565 569 0.583438 CATGCTCCGCGTATTCAAGG 59.417 55.000 4.92 0.00 0.00 3.61
566 570 0.041839 GCATGCTCCGCGTATTCAAG 60.042 55.000 11.37 0.00 0.00 3.02
567 571 2.013807 GCATGCTCCGCGTATTCAA 58.986 52.632 11.37 0.00 0.00 2.69
568 572 3.717899 GCATGCTCCGCGTATTCA 58.282 55.556 11.37 0.00 0.00 2.57
576 580 3.664025 TTCCACTCCGCATGCTCCG 62.664 63.158 17.13 5.79 0.00 4.63
577 581 0.749454 ATTTCCACTCCGCATGCTCC 60.749 55.000 17.13 0.00 0.00 4.70
578 582 0.659957 GATTTCCACTCCGCATGCTC 59.340 55.000 17.13 0.00 0.00 4.26
579 583 0.254178 AGATTTCCACTCCGCATGCT 59.746 50.000 17.13 0.00 0.00 3.79
580 584 0.659957 GAGATTTCCACTCCGCATGC 59.340 55.000 7.91 7.91 0.00 4.06
581 585 1.938577 CTGAGATTTCCACTCCGCATG 59.061 52.381 0.00 0.00 33.95 4.06
582 586 1.745141 GCTGAGATTTCCACTCCGCAT 60.745 52.381 0.00 0.00 41.69 4.73
583 587 0.391661 GCTGAGATTTCCACTCCGCA 60.392 55.000 0.00 0.00 41.69 5.69
584 588 1.092345 GGCTGAGATTTCCACTCCGC 61.092 60.000 0.00 0.00 41.47 5.54
585 589 0.807667 CGGCTGAGATTTCCACTCCG 60.808 60.000 0.00 0.00 33.95 4.63
586 590 0.250513 ACGGCTGAGATTTCCACTCC 59.749 55.000 0.00 0.00 33.95 3.85
587 591 1.363744 CACGGCTGAGATTTCCACTC 58.636 55.000 0.00 0.00 35.26 3.51
588 592 0.674895 GCACGGCTGAGATTTCCACT 60.675 55.000 0.00 0.00 0.00 4.00
589 593 0.955428 TGCACGGCTGAGATTTCCAC 60.955 55.000 0.00 0.00 0.00 4.02
590 594 0.250684 TTGCACGGCTGAGATTTCCA 60.251 50.000 0.00 0.00 0.00 3.53
591 595 0.449388 CTTGCACGGCTGAGATTTCC 59.551 55.000 0.00 0.00 0.00 3.13
592 596 0.449388 CCTTGCACGGCTGAGATTTC 59.551 55.000 0.00 0.00 0.00 2.17
593 597 0.962356 CCCTTGCACGGCTGAGATTT 60.962 55.000 3.07 0.00 0.00 2.17
594 598 1.377725 CCCTTGCACGGCTGAGATT 60.378 57.895 3.07 0.00 0.00 2.40
595 599 2.270205 CCCTTGCACGGCTGAGAT 59.730 61.111 3.07 0.00 0.00 2.75
596 600 4.704833 GCCCTTGCACGGCTGAGA 62.705 66.667 15.39 0.00 43.48 3.27
602 606 1.814772 TTTTCATGGCCCTTGCACGG 61.815 55.000 0.00 1.29 40.13 4.94
603 607 0.667184 GTTTTCATGGCCCTTGCACG 60.667 55.000 0.00 0.00 40.13 5.34
604 608 0.667184 CGTTTTCATGGCCCTTGCAC 60.667 55.000 0.00 0.00 40.13 4.57
605 609 1.664873 CGTTTTCATGGCCCTTGCA 59.335 52.632 0.00 0.00 40.13 4.08
606 610 1.079888 CCGTTTTCATGGCCCTTGC 60.080 57.895 0.00 0.00 0.00 4.01
613 617 3.448340 CCCCGGCCGTTTTCATGG 61.448 66.667 26.12 15.91 0.00 3.66
614 618 2.675075 ACCCCGGCCGTTTTCATG 60.675 61.111 26.12 6.34 0.00 3.07
615 619 2.360726 GACCCCGGCCGTTTTCAT 60.361 61.111 26.12 2.47 0.00 2.57
616 620 4.992511 CGACCCCGGCCGTTTTCA 62.993 66.667 26.12 0.00 0.00 2.69
617 621 4.685467 TCGACCCCGGCCGTTTTC 62.685 66.667 26.12 15.26 36.24 2.29
618 622 4.994471 GTCGACCCCGGCCGTTTT 62.994 66.667 26.12 6.90 33.63 2.43
637 641 0.038343 CATTTGGTGCCCAACGAAGG 60.038 55.000 6.19 0.00 43.82 3.46
638 642 3.495124 CATTTGGTGCCCAACGAAG 57.505 52.632 6.19 0.00 43.82 3.79
648 652 2.483288 GTACCGCCGCATTTGGTG 59.517 61.111 0.00 0.00 37.20 4.17
649 653 3.122323 CGTACCGCCGCATTTGGT 61.122 61.111 0.00 0.00 39.80 3.67
666 670 4.587189 CGAATCGGTCCGGGGAGC 62.587 72.222 12.29 6.84 39.05 4.70
667 671 3.912907 CCGAATCGGTCCGGGGAG 61.913 72.222 14.46 1.15 42.73 4.30
677 681 1.226030 GAAATACCCGGGCCGAATCG 61.226 60.000 30.79 14.00 0.00 3.34
678 682 0.887836 GGAAATACCCGGGCCGAATC 60.888 60.000 30.79 12.89 0.00 2.52
679 683 1.149854 GGAAATACCCGGGCCGAAT 59.850 57.895 30.79 17.58 0.00 3.34
680 684 2.591198 GGAAATACCCGGGCCGAA 59.409 61.111 30.79 13.15 0.00 4.30
697 701 3.415087 CCTCCTTCCCCTGGCTGG 61.415 72.222 2.96 2.96 0.00 4.85
698 702 3.415087 CCCTCCTTCCCCTGGCTG 61.415 72.222 0.00 0.00 0.00 4.85
699 703 4.767892 CCCCTCCTTCCCCTGGCT 62.768 72.222 0.00 0.00 0.00 4.75
701 705 3.369161 ATCCCCCTCCTTCCCCTGG 62.369 68.421 0.00 0.00 0.00 4.45
702 706 1.772156 GATCCCCCTCCTTCCCCTG 60.772 68.421 0.00 0.00 0.00 4.45
703 707 2.712746 GATCCCCCTCCTTCCCCT 59.287 66.667 0.00 0.00 0.00 4.79
704 708 2.450699 GGATCCCCCTCCTTCCCC 60.451 72.222 0.00 0.00 32.18 4.81
720 724 0.105658 TAACCAGGGATCCTCTCGGG 60.106 60.000 12.58 7.89 38.25 5.14
721 725 1.041437 GTAACCAGGGATCCTCTCGG 58.959 60.000 12.58 12.67 0.00 4.63
722 726 1.041437 GGTAACCAGGGATCCTCTCG 58.959 60.000 12.58 2.57 0.00 4.04
723 727 2.176247 TGGTAACCAGGGATCCTCTC 57.824 55.000 12.58 0.00 0.00 3.20
724 728 2.661176 TTGGTAACCAGGGATCCTCT 57.339 50.000 12.58 4.19 33.81 3.69
725 729 3.202151 TCATTTGGTAACCAGGGATCCTC 59.798 47.826 12.58 1.55 33.81 3.71
726 730 3.053619 GTCATTTGGTAACCAGGGATCCT 60.054 47.826 12.58 0.00 33.81 3.24
727 731 3.288092 GTCATTTGGTAACCAGGGATCC 58.712 50.000 1.92 1.92 33.81 3.36
728 732 3.963129 TGTCATTTGGTAACCAGGGATC 58.037 45.455 0.00 0.00 33.81 3.36
729 733 4.280819 CATGTCATTTGGTAACCAGGGAT 58.719 43.478 0.00 0.00 33.81 3.85
730 734 3.563261 CCATGTCATTTGGTAACCAGGGA 60.563 47.826 0.00 0.00 33.81 4.20
731 735 2.760092 CCATGTCATTTGGTAACCAGGG 59.240 50.000 0.00 0.00 33.81 4.45
732 736 3.696045 TCCATGTCATTTGGTAACCAGG 58.304 45.455 0.00 0.00 33.81 4.45
733 737 4.588899 TCTCCATGTCATTTGGTAACCAG 58.411 43.478 0.00 0.00 33.81 4.00
734 738 4.649267 TCTCCATGTCATTTGGTAACCA 57.351 40.909 0.00 0.00 35.64 3.67
735 739 5.242838 TGTTTCTCCATGTCATTTGGTAACC 59.757 40.000 0.00 0.00 35.64 2.85
736 740 6.206634 TCTGTTTCTCCATGTCATTTGGTAAC 59.793 38.462 0.00 0.00 35.64 2.50
737 741 6.206634 GTCTGTTTCTCCATGTCATTTGGTAA 59.793 38.462 0.00 0.00 35.64 2.85
738 742 5.705441 GTCTGTTTCTCCATGTCATTTGGTA 59.295 40.000 0.00 0.00 35.64 3.25
739 743 4.520492 GTCTGTTTCTCCATGTCATTTGGT 59.480 41.667 0.00 0.00 35.64 3.67
740 744 4.520111 TGTCTGTTTCTCCATGTCATTTGG 59.480 41.667 0.00 0.00 35.45 3.28
741 745 5.008911 TGTGTCTGTTTCTCCATGTCATTTG 59.991 40.000 0.00 0.00 0.00 2.32
742 746 5.132502 TGTGTCTGTTTCTCCATGTCATTT 58.867 37.500 0.00 0.00 0.00 2.32
743 747 4.717877 TGTGTCTGTTTCTCCATGTCATT 58.282 39.130 0.00 0.00 0.00 2.57
744 748 4.321718 CTGTGTCTGTTTCTCCATGTCAT 58.678 43.478 0.00 0.00 0.00 3.06
745 749 3.732212 CTGTGTCTGTTTCTCCATGTCA 58.268 45.455 0.00 0.00 0.00 3.58
746 750 2.481952 GCTGTGTCTGTTTCTCCATGTC 59.518 50.000 0.00 0.00 0.00 3.06
747 751 2.158769 TGCTGTGTCTGTTTCTCCATGT 60.159 45.455 0.00 0.00 0.00 3.21
748 752 2.225019 GTGCTGTGTCTGTTTCTCCATG 59.775 50.000 0.00 0.00 0.00 3.66
749 753 2.498167 GTGCTGTGTCTGTTTCTCCAT 58.502 47.619 0.00 0.00 0.00 3.41
750 754 1.806247 CGTGCTGTGTCTGTTTCTCCA 60.806 52.381 0.00 0.00 0.00 3.86
760 764 1.445238 GAGAGAGCCGTGCTGTGTC 60.445 63.158 2.98 4.08 39.88 3.67
761 765 1.872197 GAGAGAGAGCCGTGCTGTGT 61.872 60.000 2.98 0.00 39.88 3.72
771 775 3.891049 AGGAGAGAAAGAGAGAGAGAGC 58.109 50.000 0.00 0.00 0.00 4.09
784 788 0.318441 CACTGTGGCGAAGGAGAGAA 59.682 55.000 0.00 0.00 0.00 2.87
944 966 2.568612 CAAGCTCACTCGGCGAGA 59.431 61.111 40.35 20.45 33.32 4.04
945 967 3.184683 GCAAGCTCACTCGGCGAG 61.185 66.667 33.42 33.42 35.52 5.03
985 1022 7.567622 GGGTATATATGGTCAGGTATATGTGGT 59.432 40.741 0.00 0.00 0.00 4.16
989 1027 7.567250 TGGTGGGTATATATGGTCAGGTATATG 59.433 40.741 0.00 0.00 0.00 1.78
997 1035 2.910319 GCCTGGTGGGTATATATGGTCA 59.090 50.000 0.00 0.00 37.43 4.02
1081 1135 3.057174 GCTATACTGACGAGCTAGGCAAT 60.057 47.826 3.24 0.00 33.28 3.56
1098 1163 2.712709 CTGGCCTCGTAGCTAGCTATA 58.287 52.381 26.59 16.74 34.39 1.31
1099 1164 1.540267 CTGGCCTCGTAGCTAGCTAT 58.460 55.000 26.59 4.58 34.39 2.97
1133 1206 0.108138 GCCCCATTCTATCGATCCCG 60.108 60.000 0.00 0.00 37.07 5.14
1134 1207 0.108138 CGCCCCATTCTATCGATCCC 60.108 60.000 0.00 0.00 0.00 3.85
1138 1211 0.757561 TGGACGCCCCATTCTATCGA 60.758 55.000 0.00 0.00 40.82 3.59
1373 1739 1.199789 GAACTGAATGCATTGCGTGGA 59.800 47.619 18.59 0.00 0.00 4.02
1418 1844 2.860735 CGCATCAGTACTAGCTCCAAAC 59.139 50.000 0.00 0.00 0.00 2.93
1424 1850 1.819288 ACACACGCATCAGTACTAGCT 59.181 47.619 0.00 0.00 0.00 3.32
1427 1853 1.731098 CGCACACACGCATCAGTACTA 60.731 52.381 0.00 0.00 0.00 1.82
1770 2238 1.566018 CTCGTTTCCACCGCAGAACC 61.566 60.000 0.00 0.00 0.00 3.62
2252 2756 5.992829 TGTTGCGAGTCCTTGTTTATTCTTA 59.007 36.000 0.00 0.00 0.00 2.10
2643 3150 2.295070 TGCTACTCTGCTTCACGTACAA 59.705 45.455 0.00 0.00 0.00 2.41
3095 4019 5.584251 TGTTTTGGTGATTTTTGCCTTCTTC 59.416 36.000 0.00 0.00 0.00 2.87
3182 4106 6.145048 ACCTTACGTATTGAAAGTTCACTTCG 59.855 38.462 0.00 8.25 36.94 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.