Multiple sequence alignment - TraesCS1A01G365700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G365700 chr1A 100.000 5926 0 0 1 5926 544593495 544599420 0.000000e+00 10944.0
1 TraesCS1A01G365700 chr1A 100.000 3843 0 0 6077 9919 544599571 544603413 0.000000e+00 7097.0
2 TraesCS1A01G365700 chr1A 87.987 616 65 8 5310 5922 544598667 544598058 0.000000e+00 719.0
3 TraesCS1A01G365700 chr1A 87.987 616 65 8 4564 5173 544599416 544598804 0.000000e+00 719.0
4 TraesCS1A01G365700 chr1A 87.298 433 33 12 524 934 142903959 142903527 9.010000e-130 475.0
5 TraesCS1A01G365700 chr1A 86.543 431 33 12 524 934 60805089 60804664 1.520000e-122 451.0
6 TraesCS1A01G365700 chr1A 85.132 417 58 3 1951 2363 563798903 563798487 3.310000e-114 424.0
7 TraesCS1A01G365700 chr1A 95.652 161 6 1 1 160 181765260 181765420 3.550000e-64 257.0
8 TraesCS1A01G365700 chr1A 84.416 154 17 7 2501 2653 376503727 376503874 2.890000e-30 145.0
9 TraesCS1A01G365700 chr1A 80.822 146 25 3 2509 2653 362852867 362853010 2.930000e-20 111.0
10 TraesCS1A01G365700 chr1A 84.314 102 5 2 6166 6256 517515244 517515143 1.370000e-13 89.8
11 TraesCS1A01G365700 chr1D 94.092 3199 130 27 6128 9295 449466670 449469840 0.000000e+00 4806.0
12 TraesCS1A01G365700 chr1D 95.369 2181 62 8 1629 3790 449461206 449463366 0.000000e+00 3432.0
13 TraesCS1A01G365700 chr1D 94.846 1824 64 16 3843 5664 449463366 449465161 0.000000e+00 2820.0
14 TraesCS1A01G365700 chr1D 92.546 711 33 7 936 1634 449460462 449461164 0.000000e+00 1002.0
15 TraesCS1A01G365700 chr1D 89.880 583 34 11 9346 9919 449469846 449470412 0.000000e+00 726.0
16 TraesCS1A01G365700 chr1D 77.569 905 136 33 3070 3952 47308217 47307358 1.500000e-132 484.0
17 TraesCS1A01G365700 chr1D 87.853 354 40 3 4822 5173 449465161 449464809 7.170000e-111 412.0
18 TraesCS1A01G365700 chr1D 88.060 335 24 6 190 509 218797314 218797647 5.620000e-102 383.0
19 TraesCS1A01G365700 chr1D 84.697 379 26 12 524 882 61941190 61940824 5.700000e-92 350.0
20 TraesCS1A01G365700 chr1D 85.065 154 16 7 2501 2653 301630908 301631055 6.210000e-32 150.0
21 TraesCS1A01G365700 chr1D 92.391 92 6 1 6166 6256 421221492 421221401 8.090000e-26 130.0
22 TraesCS1A01G365700 chr1D 89.706 68 7 0 2509 2576 250738442 250738509 4.940000e-13 87.9
23 TraesCS1A01G365700 chr1D 72.642 318 63 17 4917 5228 392760074 392760373 6.380000e-12 84.2
24 TraesCS1A01G365700 chr1B 92.288 1971 99 22 6102 8063 615122064 615123990 0.000000e+00 2748.0
25 TraesCS1A01G365700 chr1B 92.486 1251 69 18 8061 9295 615124149 615125390 0.000000e+00 1766.0
26 TraesCS1A01G365700 chr1B 90.786 738 55 6 5190 5924 615121289 615122016 0.000000e+00 974.0
27 TraesCS1A01G365700 chr1B 80.267 1348 215 24 3070 4378 375417544 375416209 0.000000e+00 968.0
28 TraesCS1A01G365700 chr1B 88.742 755 54 13 1629 2363 615118282 615119025 0.000000e+00 894.0
29 TraesCS1A01G365700 chr1B 89.133 727 41 17 923 1634 615117537 615118240 0.000000e+00 870.0
30 TraesCS1A01G365700 chr1B 86.350 652 76 11 4527 5171 615122052 615121407 0.000000e+00 699.0
31 TraesCS1A01G365700 chr1B 91.449 421 34 2 4862 5281 615120861 615121280 2.400000e-160 577.0
32 TraesCS1A01G365700 chr1B 92.932 382 24 3 4259 4639 615119641 615120020 4.050000e-153 553.0
33 TraesCS1A01G365700 chr1B 87.703 431 32 13 524 934 17348085 17347656 5.390000e-132 483.0
34 TraesCS1A01G365700 chr1B 87.097 434 33 13 524 934 315614946 315614513 4.190000e-128 470.0
35 TraesCS1A01G365700 chr1B 93.851 309 13 3 9615 9919 615125636 615125942 2.520000e-125 460.0
36 TraesCS1A01G365700 chr1B 86.709 316 37 4 5310 5625 615121171 615120861 7.370000e-91 346.0
37 TraesCS1A01G365700 chr1B 94.771 153 7 1 2381 2532 615119227 615119379 4.630000e-58 237.0
38 TraesCS1A01G365700 chr1B 92.708 96 5 2 6162 6256 570521164 570521070 4.830000e-28 137.0
39 TraesCS1A01G365700 chr1B 73.698 384 77 16 6323 6691 375419213 375418839 2.910000e-25 128.0
40 TraesCS1A01G365700 chr1B 73.298 382 80 15 6323 6690 375403978 375403605 4.870000e-23 121.0
41 TraesCS1A01G365700 chr1B 73.421 380 76 18 6323 6686 566039765 566039395 1.750000e-22 119.0
42 TraesCS1A01G365700 chr1B 96.296 54 2 0 2960 3013 363632682 363632629 1.370000e-13 89.8
43 TraesCS1A01G365700 chr1B 74.429 219 46 8 5088 5297 529953066 529952849 1.780000e-12 86.1
44 TraesCS1A01G365700 chr1B 78.333 120 7 4 5658 5777 615120861 615120761 1.080000e-04 60.2
45 TraesCS1A01G365700 chr7A 81.259 1350 197 29 3070 4378 7820403 7821737 0.000000e+00 1040.0
46 TraesCS1A01G365700 chr7A 78.306 862 158 15 3541 4378 30522816 30521960 6.820000e-146 529.0
47 TraesCS1A01G365700 chr7A 86.091 417 54 3 1951 2363 735831612 735832028 7.070000e-121 446.0
48 TraesCS1A01G365700 chr7A 85.851 417 55 3 1951 2363 7819207 7819623 3.290000e-119 440.0
49 TraesCS1A01G365700 chr7A 85.372 417 57 3 1951 2363 164190559 164190143 7.120000e-116 429.0
50 TraesCS1A01G365700 chr7A 95.541 157 6 1 5 160 432373268 432373112 5.950000e-62 250.0
51 TraesCS1A01G365700 chr7A 93.413 167 9 2 1 166 577235521 577235356 7.690000e-61 246.0
52 TraesCS1A01G365700 chr7A 84.247 146 19 4 2509 2653 498941093 498941235 1.340000e-28 139.0
53 TraesCS1A01G365700 chr6A 80.684 1346 212 24 3070 4378 576386225 576384891 0.000000e+00 1002.0
54 TraesCS1A01G365700 chr6A 80.401 1347 210 22 3070 4378 581719998 581718668 0.000000e+00 976.0
55 TraesCS1A01G365700 chr6A 87.298 433 33 13 524 934 237919318 237919750 9.010000e-130 475.0
56 TraesCS1A01G365700 chr6A 85.167 418 56 5 1951 2363 581721183 581720767 3.310000e-114 424.0
57 TraesCS1A01G365700 chr6A 94.410 161 8 1 1 160 346592629 346592789 7.690000e-61 246.0
58 TraesCS1A01G365700 chr2A 79.955 1347 220 24 3070 4378 762247248 762248582 0.000000e+00 946.0
59 TraesCS1A01G365700 chr2A 87.419 461 36 8 1174 1634 459024305 459023867 2.470000e-140 510.0
60 TraesCS1A01G365700 chr2A 85.383 431 36 16 524 933 654603360 654602936 1.190000e-113 422.0
61 TraesCS1A01G365700 chr2A 95.031 161 7 1 1 160 48856956 48857116 1.650000e-62 252.0
62 TraesCS1A01G365700 chr2A 84.559 136 20 1 2366 2501 424526543 424526677 6.250000e-27 134.0
63 TraesCS1A01G365700 chr2A 87.850 107 7 2 1629 1734 459023825 459023724 4.870000e-23 121.0
64 TraesCS1A01G365700 chr2A 96.491 57 2 0 2960 3016 449271373 449271317 2.950000e-15 95.3
65 TraesCS1A01G365700 chr2A 89.474 76 7 1 6161 6235 562986632 562986557 2.950000e-15 95.3
66 TraesCS1A01G365700 chr6B 79.438 1352 214 34 3070 4378 657625038 657623708 0.000000e+00 898.0
67 TraesCS1A01G365700 chr6B 85.466 461 48 6 1174 1634 663138342 663137901 7.020000e-126 462.0
68 TraesCS1A01G365700 chr6B 85.082 429 44 13 524 933 51563774 51563347 4.280000e-113 420.0
69 TraesCS1A01G365700 chr6B 90.000 320 21 6 201 510 678746775 678747093 4.310000e-108 403.0
70 TraesCS1A01G365700 chr6B 90.654 107 9 1 1629 1734 663137859 663137753 3.740000e-29 141.0
71 TraesCS1A01G365700 chr6B 74.026 231 42 13 6334 6551 52758444 52758219 2.970000e-10 78.7
72 TraesCS1A01G365700 chr6B 93.333 45 3 0 9302 9346 538817663 538817619 6.430000e-07 67.6
73 TraesCS1A01G365700 chr3D 79.231 1353 218 26 3071 4378 305894224 305895558 0.000000e+00 883.0
74 TraesCS1A01G365700 chr3D 86.620 142 17 2 2510 2651 264698220 264698359 1.330000e-33 156.0
75 TraesCS1A01G365700 chr3D 81.507 146 24 3 2509 2653 266810053 266810196 6.290000e-22 117.0
76 TraesCS1A01G365700 chr3D 93.939 66 3 1 6157 6221 590755617 590755552 2.280000e-16 99.0
77 TraesCS1A01G365700 chr3D 91.111 45 2 1 9301 9343 599206045 599206001 1.080000e-04 60.2
78 TraesCS1A01G365700 chr5B 79.207 1135 203 19 3267 4378 355911525 355912649 0.000000e+00 758.0
79 TraesCS1A01G365700 chr5B 86.543 431 32 12 524 934 703089727 703090151 1.520000e-122 451.0
80 TraesCS1A01G365700 chr5B 87.468 391 30 10 561 934 272165890 272166278 5.500000e-117 433.0
81 TraesCS1A01G365700 chr5B 93.878 98 5 1 6159 6256 503529155 503529059 8.030000e-31 147.0
82 TraesCS1A01G365700 chr5B 82.192 146 23 3 2509 2653 100286074 100286217 1.350000e-23 122.0
83 TraesCS1A01G365700 chr5B 92.453 53 3 1 6204 6255 389824291 389824343 3.840000e-09 75.0
84 TraesCS1A01G365700 chr2D 78.195 986 171 26 3431 4378 568456079 568455100 3.090000e-164 590.0
85 TraesCS1A01G365700 chr2D 89.590 317 22 6 205 511 544629265 544629580 9.340000e-105 392.0
86 TraesCS1A01G365700 chr2D 91.813 171 12 2 1 170 170450576 170450407 4.630000e-58 237.0
87 TraesCS1A01G365700 chr2D 87.943 141 15 2 2513 2653 593800456 593800318 2.220000e-36 165.0
88 TraesCS1A01G365700 chr2D 95.238 63 2 1 6165 6226 425212644 425212706 2.280000e-16 99.0
89 TraesCS1A01G365700 chr7D 87.991 433 30 10 524 934 219836581 219837013 8.950000e-135 492.0
90 TraesCS1A01G365700 chr7D 89.969 319 21 4 202 510 99961442 99961759 1.550000e-107 401.0
91 TraesCS1A01G365700 chr7D 93.789 161 9 1 1 160 429117015 429117175 3.580000e-59 241.0
92 TraesCS1A01G365700 chr7D 81.410 156 25 4 2500 2653 511583832 511583985 3.760000e-24 124.0
93 TraesCS1A01G365700 chr7D 81.295 139 23 3 2509 2646 321365713 321365577 1.050000e-19 110.0
94 TraesCS1A01G365700 chr7D 96.429 56 1 1 2966 3021 350158828 350158774 3.820000e-14 91.6
95 TraesCS1A01G365700 chr7D 94.643 56 3 0 2962 3017 443165600 443165655 4.940000e-13 87.9
96 TraesCS1A01G365700 chr7D 95.122 41 1 1 6166 6206 622102559 622102520 8.320000e-06 63.9
97 TraesCS1A01G365700 chr4B 87.935 431 32 11 524 934 385954544 385954114 3.220000e-134 490.0
98 TraesCS1A01G365700 chr4B 88.519 270 21 7 524 783 139563333 139563064 1.610000e-82 318.0
99 TraesCS1A01G365700 chr4B 73.387 372 79 13 6323 6680 658523914 658523549 4.870000e-23 121.0
100 TraesCS1A01G365700 chr4B 72.840 405 90 13 6323 6712 658530487 658530088 4.870000e-23 121.0
101 TraesCS1A01G365700 chr4B 92.754 69 4 1 6162 6230 242724021 242724088 2.280000e-16 99.0
102 TraesCS1A01G365700 chr4B 89.831 59 6 0 2510 2568 285616559 285616617 1.070000e-09 76.8
103 TraesCS1A01G365700 chr4B 84.848 66 10 0 2510 2575 339266469 339266404 6.430000e-07 67.6
104 TraesCS1A01G365700 chr3A 87.760 433 31 12 524 934 209407709 209408141 4.160000e-133 486.0
105 TraesCS1A01G365700 chr3A 83.673 147 22 2 2513 2659 566885759 566885615 4.830000e-28 137.0
106 TraesCS1A01G365700 chr5D 88.943 407 25 11 524 910 486260782 486260376 1.500000e-132 484.0
107 TraesCS1A01G365700 chr5D 80.272 147 24 5 2515 2659 164656206 164656063 1.360000e-18 106.0
108 TraesCS1A01G365700 chr5D 80.272 147 24 5 2509 2653 208728949 208729092 1.360000e-18 106.0
109 TraesCS1A01G365700 chr5D 79.866 149 26 4 2500 2646 236112751 236112897 1.360000e-18 106.0
110 TraesCS1A01G365700 chr5D 79.592 147 25 5 2509 2653 426918996 426919139 6.340000e-17 100.0
111 TraesCS1A01G365700 chr5D 84.694 98 6 4 6159 6256 416626690 416626602 1.370000e-13 89.8
112 TraesCS1A01G365700 chr5D 85.714 77 7 3 2501 2576 13715221 13715148 2.970000e-10 78.7
113 TraesCS1A01G365700 chr3B 87.731 432 32 12 524 934 690854251 690854682 1.500000e-132 484.0
114 TraesCS1A01G365700 chr3B 90.476 315 21 2 205 510 655325403 655325089 3.340000e-109 407.0
115 TraesCS1A01G365700 chr3B 89.937 318 22 4 202 510 62001870 62002186 1.550000e-107 401.0
116 TraesCS1A01G365700 chr3B 79.331 329 63 5 4053 4378 448527598 448527924 1.000000e-54 226.0
117 TraesCS1A01G365700 chr3B 85.915 142 18 2 2510 2651 335838216 335838355 6.210000e-32 150.0
118 TraesCS1A01G365700 chr3B 95.556 90 3 1 6166 6254 539595947 539596036 1.040000e-29 143.0
119 TraesCS1A01G365700 chr3B 73.925 372 78 12 6323 6680 22108470 22108836 2.250000e-26 132.0
120 TraesCS1A01G365700 chr3B 85.965 57 7 1 1759 1814 719434564 719434620 1.080000e-04 60.2
121 TraesCS1A01G365700 chr2B 79.060 745 109 27 3083 3795 546946659 546945930 1.510000e-127 468.0
122 TraesCS1A01G365700 chr2B 89.286 336 20 10 190 510 45669383 45669717 3.340000e-109 407.0
123 TraesCS1A01G365700 chr2B 89.623 318 24 5 195 504 488981255 488981571 7.220000e-106 396.0
124 TraesCS1A01G365700 chr2B 83.916 429 36 9 524 934 556705233 556705646 7.270000e-101 379.0
125 TraesCS1A01G365700 chr2B 94.410 161 8 1 1 160 415057701 415057861 7.690000e-61 246.0
126 TraesCS1A01G365700 chr2B 72.840 405 90 13 6323 6712 655784507 655784906 4.870000e-23 121.0
127 TraesCS1A01G365700 chr2B 94.737 57 3 0 2960 3016 406878793 406878737 1.370000e-13 89.8
128 TraesCS1A01G365700 chr2B 74.167 240 48 8 6323 6551 655765893 655766129 4.940000e-13 87.9
129 TraesCS1A01G365700 chr7B 86.343 432 36 12 524 933 79732059 79732489 5.460000e-122 449.0
130 TraesCS1A01G365700 chr7B 93.789 161 9 1 1 160 63844299 63844139 3.580000e-59 241.0
131 TraesCS1A01G365700 chr7B 93.103 58 4 0 2960 3017 460596674 460596731 1.780000e-12 86.1
132 TraesCS1A01G365700 chrUn 85.612 417 56 3 1951 2363 83365673 83365257 1.530000e-117 435.0
133 TraesCS1A01G365700 chrUn 86.207 116 12 3 4916 5030 218391922 218392034 1.350000e-23 122.0
134 TraesCS1A01G365700 chrUn 100.000 28 0 0 3382 3409 257032105 257032078 1.800000e-02 52.8
135 TraesCS1A01G365700 chr5A 85.372 417 57 3 1951 2363 669754159 669754575 7.120000e-116 429.0
136 TraesCS1A01G365700 chr5A 78.125 576 108 16 4507 5069 8107746 8107176 5.700000e-92 350.0
137 TraesCS1A01G365700 chr5A 76.708 571 102 21 4507 5069 472075676 472076223 1.260000e-73 289.0
138 TraesCS1A01G365700 chr5A 84.768 151 21 2 2509 2659 443723660 443723512 6.210000e-32 150.0
139 TraesCS1A01G365700 chr5A 93.939 99 4 2 6159 6256 529437621 529437524 2.230000e-31 148.0
140 TraesCS1A01G365700 chr5A 84.277 159 18 5 4919 5073 703663701 703663546 2.230000e-31 148.0
141 TraesCS1A01G365700 chr4D 88.393 336 23 8 190 510 59037269 59036935 3.360000e-104 390.0
142 TraesCS1A01G365700 chr4D 95.652 69 2 1 6162 6230 277403495 277403562 1.050000e-19 110.0
143 TraesCS1A01G365700 chr4D 76.923 156 32 4 2500 2653 252142408 252142561 1.780000e-12 86.1
144 TraesCS1A01G365700 chr4D 89.062 64 7 0 2513 2576 281182521 281182458 8.260000e-11 80.5
145 TraesCS1A01G365700 chr4D 86.567 67 9 0 2510 2576 189695892 189695958 3.840000e-09 75.0
146 TraesCS1A01G365700 chr4A 86.667 135 18 0 2366 2500 648660480 648660614 6.210000e-32 150.0
147 TraesCS1A01G365700 chr4A 74.799 373 70 16 6323 6680 648665949 648666312 8.030000e-31 147.0
148 TraesCS1A01G365700 chr6D 81.529 157 23 6 2500 2653 144459299 144459452 3.760000e-24 124.0
149 TraesCS1A01G365700 chr6D 93.103 58 4 0 2960 3017 224751105 224751048 1.780000e-12 86.1
150 TraesCS1A01G365700 chr6D 85.294 68 10 0 2510 2577 370042413 370042346 4.970000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G365700 chr1A 544593495 544603413 9918 False 9020.500000 10944 100.000000 1 9919 2 chr1A.!!$F4 9918
1 TraesCS1A01G365700 chr1A 544598058 544599416 1358 True 719.000000 719 87.987000 4564 5922 2 chr1A.!!$R5 1358
2 TraesCS1A01G365700 chr1D 449460462 449470412 9950 False 2557.200000 4806 93.346600 936 9919 5 chr1D.!!$F5 8983
3 TraesCS1A01G365700 chr1D 47307358 47308217 859 True 484.000000 484 77.569000 3070 3952 1 chr1D.!!$R1 882
4 TraesCS1A01G365700 chr1B 615117537 615125942 8405 False 1008.777778 2748 91.826444 923 9919 9 chr1B.!!$F1 8996
5 TraesCS1A01G365700 chr1B 375416209 375419213 3004 True 548.000000 968 76.982500 3070 6691 2 chr1B.!!$R8 3621
6 TraesCS1A01G365700 chr1B 615120761 615122052 1291 True 368.400000 699 83.797333 4527 5777 3 chr1B.!!$R9 1250
7 TraesCS1A01G365700 chr7A 7819207 7821737 2530 False 740.000000 1040 83.555000 1951 4378 2 chr7A.!!$F3 2427
8 TraesCS1A01G365700 chr7A 30521960 30522816 856 True 529.000000 529 78.306000 3541 4378 1 chr7A.!!$R1 837
9 TraesCS1A01G365700 chr6A 576384891 576386225 1334 True 1002.000000 1002 80.684000 3070 4378 1 chr6A.!!$R1 1308
10 TraesCS1A01G365700 chr6A 581718668 581721183 2515 True 700.000000 976 82.784000 1951 4378 2 chr6A.!!$R2 2427
11 TraesCS1A01G365700 chr2A 762247248 762248582 1334 False 946.000000 946 79.955000 3070 4378 1 chr2A.!!$F3 1308
12 TraesCS1A01G365700 chr2A 459023724 459024305 581 True 315.500000 510 87.634500 1174 1734 2 chr2A.!!$R4 560
13 TraesCS1A01G365700 chr6B 657623708 657625038 1330 True 898.000000 898 79.438000 3070 4378 1 chr6B.!!$R4 1308
14 TraesCS1A01G365700 chr6B 663137753 663138342 589 True 301.500000 462 88.060000 1174 1734 2 chr6B.!!$R5 560
15 TraesCS1A01G365700 chr3D 305894224 305895558 1334 False 883.000000 883 79.231000 3071 4378 1 chr3D.!!$F3 1307
16 TraesCS1A01G365700 chr5B 355911525 355912649 1124 False 758.000000 758 79.207000 3267 4378 1 chr5B.!!$F3 1111
17 TraesCS1A01G365700 chr2D 568455100 568456079 979 True 590.000000 590 78.195000 3431 4378 1 chr2D.!!$R2 947
18 TraesCS1A01G365700 chr2B 546945930 546946659 729 True 468.000000 468 79.060000 3083 3795 1 chr2B.!!$R2 712
19 TraesCS1A01G365700 chr5A 8107176 8107746 570 True 350.000000 350 78.125000 4507 5069 1 chr5A.!!$R1 562
20 TraesCS1A01G365700 chr5A 472075676 472076223 547 False 289.000000 289 76.708000 4507 5069 1 chr5A.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 864 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69 F
1919 2000 0.252330 TTCCATCCCAGTGGGTCGTA 60.252 55.000 27.87 9.12 44.74 3.43 F
1923 2004 0.335361 ATCCCAGTGGGTCGTAGTCT 59.665 55.000 27.87 1.29 44.74 3.24 F
3838 4184 0.528924 TTGTACCGAGGATCCACGTG 59.471 55.000 26.58 20.32 0.00 4.49 F
4666 5769 0.037326 TTGCCTCATCTGACACCGAC 60.037 55.000 0.00 0.00 0.00 4.79 F
5548 6954 1.684983 AGCTGCAACTGCTCATTTTGT 59.315 42.857 1.02 0.00 42.66 2.83 F
6615 9105 0.179062 GATCAGGCAGCCGAGACAAT 60.179 55.000 5.55 0.00 0.00 2.71 F
6720 9211 1.068741 ACGTTATCCTTCCATCCGAGC 59.931 52.381 0.00 0.00 0.00 5.03 F
7580 10095 2.789893 GCTGTTCGATTCTCGGTCATAC 59.210 50.000 0.00 0.00 40.88 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2726 3017 2.031333 GCTTCTGTTGTGCTCTCCTTTG 60.031 50.000 0.00 0.00 0.00 2.77 R
3822 4168 1.100510 CTTCACGTGGATCCTCGGTA 58.899 55.000 32.76 20.70 37.27 4.02 R
3840 4186 6.733509 AGACACCTACTAGTGATCCTAAACT 58.266 40.000 5.39 0.00 40.34 2.66 R
4722 5867 2.539547 GCGTGGATGTTGACATGTATGC 60.540 50.000 0.00 3.97 36.57 3.14 R
6282 8764 1.141657 TCAGGCTTATGGATGACTGCC 59.858 52.381 0.00 0.00 40.54 4.85 R
6720 9211 0.105964 TGGAATTGATCTACGGCCCG 59.894 55.000 0.00 0.00 0.00 6.13 R
7734 10249 1.985473 AAAGCACAGACTTGCCATCA 58.015 45.000 6.15 0.00 44.14 3.07 R
7844 10359 2.068519 TGTGCACTTTACAGCTCGATG 58.931 47.619 19.41 0.00 0.00 3.84 R
9330 12037 1.134128 AGTCAGCAACCATGTGACACA 60.134 47.619 11.41 11.41 38.72 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.276844 CGCTTAAGCACGCATAGGC 59.723 57.895 26.29 0.00 42.21 3.93
25 26 1.154205 CGCTTAAGCACGCATAGGCT 61.154 55.000 26.29 0.00 43.46 4.58
27 28 1.808133 GCTTAAGCACGCATAGGCTCT 60.808 52.381 22.59 0.00 40.01 4.09
29 30 3.312828 CTTAAGCACGCATAGGCTCTAG 58.687 50.000 0.00 0.00 40.01 2.43
33 34 3.043419 CGCATAGGCTCTAGGCGT 58.957 61.111 23.80 0.00 46.23 5.68
34 35 1.364171 CGCATAGGCTCTAGGCGTT 59.636 57.895 23.80 0.00 46.23 4.84
36 37 0.601311 GCATAGGCTCTAGGCGTTGG 60.601 60.000 0.00 0.25 46.23 3.77
38 39 1.048724 ATAGGCTCTAGGCGTTGGCA 61.049 55.000 0.00 0.00 46.23 4.92
39 40 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
40 41 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
41 42 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
42 43 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
43 44 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
70 71 4.041240 CGCATAACTACGCTTAATCTGC 57.959 45.455 0.00 0.00 0.00 4.26
80 81 2.653584 CGCTTAATCTGCGCATAATTGC 59.346 45.455 21.82 17.41 46.72 3.56
108 109 4.413495 GCATACGCTTTGGTCAGTAAAA 57.587 40.909 0.00 0.00 34.30 1.52
109 110 4.156182 GCATACGCTTTGGTCAGTAAAAC 58.844 43.478 0.00 0.00 34.30 2.43
112 113 1.003331 CGCTTTGGTCAGTAAAACGCA 60.003 47.619 0.00 0.00 0.00 5.24
113 114 2.539953 CGCTTTGGTCAGTAAAACGCAA 60.540 45.455 0.00 0.00 0.00 4.85
115 116 3.628017 CTTTGGTCAGTAAAACGCAAGG 58.372 45.455 0.00 0.00 46.39 3.61
128 129 1.081708 GCAAGGCGGTGGTAAAACG 60.082 57.895 0.00 0.00 0.00 3.60
135 136 2.409152 CGGTGGTAAAACGCACAATT 57.591 45.000 0.00 0.00 0.00 2.32
136 137 2.733517 CGGTGGTAAAACGCACAATTT 58.266 42.857 0.00 0.00 0.00 1.82
137 138 3.886549 CGGTGGTAAAACGCACAATTTA 58.113 40.909 0.00 0.00 0.00 1.40
138 139 3.664947 CGGTGGTAAAACGCACAATTTAC 59.335 43.478 0.00 0.00 39.92 2.01
139 140 3.664947 GGTGGTAAAACGCACAATTTACG 59.335 43.478 0.00 0.00 40.98 3.18
140 141 3.118319 GTGGTAAAACGCACAATTTACGC 59.882 43.478 0.00 0.00 40.98 4.42
141 142 2.657848 GGTAAAACGCACAATTTACGCC 59.342 45.455 0.00 0.00 40.98 5.68
143 144 3.900388 AAAACGCACAATTTACGCCTA 57.100 38.095 0.00 0.00 0.00 3.93
144 145 2.886587 AACGCACAATTTACGCCTAC 57.113 45.000 0.00 0.00 0.00 3.18
176 177 7.117241 TGAACTATAGTTTTGTTTCAGCTCG 57.883 36.000 18.96 0.00 38.56 5.03
177 178 6.147164 TGAACTATAGTTTTGTTTCAGCTCGG 59.853 38.462 18.96 0.00 38.56 4.63
179 180 1.680338 AGTTTTGTTTCAGCTCGGCT 58.320 45.000 0.00 0.00 40.77 5.52
183 184 2.080286 TTGTTTCAGCTCGGCTAGAC 57.920 50.000 0.00 0.00 36.40 2.59
185 186 0.246635 GTTTCAGCTCGGCTAGACCA 59.753 55.000 0.00 0.00 36.40 4.02
187 188 0.323451 TTCAGCTCGGCTAGACCAGA 60.323 55.000 0.00 0.00 36.40 3.86
188 189 0.749818 TCAGCTCGGCTAGACCAGAG 60.750 60.000 0.00 7.36 36.40 3.35
189 190 1.034838 CAGCTCGGCTAGACCAGAGT 61.035 60.000 0.00 0.00 39.68 3.24
190 191 0.547075 AGCTCGGCTAGACCAGAGTA 59.453 55.000 0.00 0.00 39.68 2.59
191 192 1.144093 AGCTCGGCTAGACCAGAGTAT 59.856 52.381 0.00 0.00 39.68 2.12
192 193 2.372504 AGCTCGGCTAGACCAGAGTATA 59.627 50.000 0.00 0.00 39.68 1.47
194 195 3.375922 GCTCGGCTAGACCAGAGTATATC 59.624 52.174 0.00 0.00 39.68 1.63
196 197 8.970428 AGCTCGGCTAGACCAGAGTATATCTG 62.970 50.000 0.00 0.00 45.75 2.90
205 206 1.066573 AGAGTATATCTGGCCATGCGC 60.067 52.381 5.51 0.00 36.69 6.09
216 217 3.137459 CATGCGCCGGGCCTTAAA 61.137 61.111 14.55 0.00 42.61 1.52
218 219 2.414785 ATGCGCCGGGCCTTAAAAG 61.415 57.895 14.55 0.00 42.61 2.27
219 220 3.060000 GCGCCGGGCCTTAAAAGT 61.060 61.111 14.55 0.00 34.80 2.66
222 223 1.303806 GCCGGGCCTTAAAAGTCCA 60.304 57.895 8.12 0.00 0.00 4.02
224 225 1.102978 CCGGGCCTTAAAAGTCCATG 58.897 55.000 0.84 0.00 0.00 3.66
225 226 1.340600 CCGGGCCTTAAAAGTCCATGA 60.341 52.381 0.84 0.00 0.00 3.07
226 227 1.743394 CGGGCCTTAAAAGTCCATGAC 59.257 52.381 0.84 0.00 0.00 3.06
227 228 2.802719 GGGCCTTAAAAGTCCATGACA 58.197 47.619 0.84 0.00 34.60 3.58
231 232 4.522789 GGCCTTAAAAGTCCATGACAGAAA 59.477 41.667 0.00 0.00 34.60 2.52
232 233 5.010617 GGCCTTAAAAGTCCATGACAGAAAA 59.989 40.000 0.00 0.00 34.60 2.29
233 234 5.920840 GCCTTAAAAGTCCATGACAGAAAAC 59.079 40.000 0.00 0.00 34.60 2.43
234 235 6.447162 CCTTAAAAGTCCATGACAGAAAACC 58.553 40.000 0.00 0.00 34.60 3.27
235 236 4.568152 AAAAGTCCATGACAGAAAACCG 57.432 40.909 0.00 0.00 34.60 4.44
236 237 3.485463 AAGTCCATGACAGAAAACCGA 57.515 42.857 0.00 0.00 34.60 4.69
237 238 3.045601 AGTCCATGACAGAAAACCGAG 57.954 47.619 0.00 0.00 34.60 4.63
238 239 2.076863 GTCCATGACAGAAAACCGAGG 58.923 52.381 0.00 0.00 32.09 4.63
239 240 0.804989 CCATGACAGAAAACCGAGGC 59.195 55.000 0.00 0.00 0.00 4.70
241 242 0.322546 ATGACAGAAAACCGAGGCCC 60.323 55.000 0.00 0.00 0.00 5.80
242 243 1.072505 GACAGAAAACCGAGGCCCA 59.927 57.895 0.00 0.00 0.00 5.36
243 244 0.955919 GACAGAAAACCGAGGCCCAG 60.956 60.000 0.00 0.00 0.00 4.45
244 245 1.374947 CAGAAAACCGAGGCCCAGA 59.625 57.895 0.00 0.00 0.00 3.86
245 246 0.955919 CAGAAAACCGAGGCCCAGAC 60.956 60.000 0.00 0.00 0.00 3.51
246 247 1.674651 GAAAACCGAGGCCCAGACC 60.675 63.158 0.00 0.00 0.00 3.85
247 248 3.205851 AAAACCGAGGCCCAGACCC 62.206 63.158 0.00 0.00 0.00 4.46
248 249 4.658786 AACCGAGGCCCAGACCCT 62.659 66.667 0.00 0.00 34.77 4.34
252 253 4.741239 GAGGCCCAGACCCTCCCA 62.741 72.222 0.00 0.00 42.46 4.37
253 254 4.748798 AGGCCCAGACCCTCCCAG 62.749 72.222 0.00 0.00 0.00 4.45
258 259 4.748798 CAGACCCTCCCAGGCCCT 62.749 72.222 0.00 0.00 32.73 5.19
259 260 2.958739 AGACCCTCCCAGGCCCTA 60.959 66.667 0.00 0.00 32.73 3.53
260 261 2.768769 GACCCTCCCAGGCCCTAC 60.769 72.222 0.00 0.00 32.73 3.18
265 266 2.445845 TCCCAGGCCCTACCATCG 60.446 66.667 0.00 0.00 43.14 3.84
266 267 3.560251 CCCAGGCCCTACCATCGG 61.560 72.222 0.00 0.00 43.14 4.18
267 268 3.560251 CCAGGCCCTACCATCGGG 61.560 72.222 0.00 0.00 44.89 5.14
272 273 3.468063 CCCTACCATCGGGCCTAC 58.532 66.667 0.84 0.00 37.90 3.18
274 275 0.763223 CCCTACCATCGGGCCTACTT 60.763 60.000 0.84 0.00 37.90 2.24
275 276 1.129058 CCTACCATCGGGCCTACTTT 58.871 55.000 0.84 0.00 37.90 2.66
276 277 1.489230 CCTACCATCGGGCCTACTTTT 59.511 52.381 0.84 0.00 37.90 2.27
278 279 0.988832 ACCATCGGGCCTACTTTTCA 59.011 50.000 0.84 0.00 37.90 2.69
279 280 1.353022 ACCATCGGGCCTACTTTTCAA 59.647 47.619 0.84 0.00 37.90 2.69
281 282 2.355716 CCATCGGGCCTACTTTTCAAGA 60.356 50.000 0.84 0.00 0.00 3.02
282 283 2.467566 TCGGGCCTACTTTTCAAGAC 57.532 50.000 0.84 0.00 0.00 3.01
283 284 1.002773 TCGGGCCTACTTTTCAAGACC 59.997 52.381 0.84 0.00 0.00 3.85
286 287 2.490168 GGGCCTACTTTTCAAGACCCAA 60.490 50.000 0.84 0.00 33.88 4.12
287 288 2.557056 GGCCTACTTTTCAAGACCCAAC 59.443 50.000 0.00 0.00 0.00 3.77
288 289 2.557056 GCCTACTTTTCAAGACCCAACC 59.443 50.000 0.00 0.00 0.00 3.77
289 290 3.154710 CCTACTTTTCAAGACCCAACCC 58.845 50.000 0.00 0.00 0.00 4.11
290 291 1.687563 ACTTTTCAAGACCCAACCCG 58.312 50.000 0.00 0.00 0.00 5.28
291 292 1.213430 ACTTTTCAAGACCCAACCCGA 59.787 47.619 0.00 0.00 0.00 5.14
293 294 0.179012 TTTCAAGACCCAACCCGACC 60.179 55.000 0.00 0.00 0.00 4.79
294 295 2.033602 CAAGACCCAACCCGACCC 59.966 66.667 0.00 0.00 0.00 4.46
296 297 1.850755 AAGACCCAACCCGACCCAT 60.851 57.895 0.00 0.00 0.00 4.00
298 299 2.204090 ACCCAACCCGACCCATCT 60.204 61.111 0.00 0.00 0.00 2.90
299 300 2.272146 CCCAACCCGACCCATCTG 59.728 66.667 0.00 0.00 0.00 2.90
300 301 2.272146 CCAACCCGACCCATCTGG 59.728 66.667 0.00 0.00 41.37 3.86
311 312 2.532250 CCCATCTGGTAAAAAGCCCT 57.468 50.000 0.00 0.00 0.00 5.19
313 314 2.291540 CCCATCTGGTAAAAAGCCCTGA 60.292 50.000 0.00 0.00 0.00 3.86
314 315 3.430453 CCATCTGGTAAAAAGCCCTGAA 58.570 45.455 0.00 0.00 0.00 3.02
315 316 3.831911 CCATCTGGTAAAAAGCCCTGAAA 59.168 43.478 0.00 0.00 0.00 2.69
316 317 4.283212 CCATCTGGTAAAAAGCCCTGAAAA 59.717 41.667 0.00 0.00 0.00 2.29
317 318 5.473039 CATCTGGTAAAAAGCCCTGAAAAG 58.527 41.667 0.00 0.00 0.00 2.27
320 321 2.289444 GGTAAAAAGCCCTGAAAAGCCC 60.289 50.000 0.00 0.00 0.00 5.19
321 322 1.806496 AAAAAGCCCTGAAAAGCCCT 58.194 45.000 0.00 0.00 0.00 5.19
324 325 2.222227 AAGCCCTGAAAAGCCCTTAG 57.778 50.000 0.00 0.00 0.00 2.18
356 357 3.741325 GGCTGGGCCTCTTCCTTA 58.259 61.111 4.53 0.00 46.69 2.69
357 358 1.999346 GGCTGGGCCTCTTCCTTAA 59.001 57.895 4.53 0.00 46.69 1.85
358 359 0.331616 GGCTGGGCCTCTTCCTTAAA 59.668 55.000 4.53 0.00 46.69 1.52
359 360 1.272480 GGCTGGGCCTCTTCCTTAAAA 60.272 52.381 4.53 0.00 46.69 1.52
360 361 2.624293 GGCTGGGCCTCTTCCTTAAAAT 60.624 50.000 4.53 0.00 46.69 1.82
362 363 2.428530 CTGGGCCTCTTCCTTAAAATGC 59.571 50.000 4.53 0.00 0.00 3.56
363 364 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
364 365 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
365 366 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
366 367 3.118992 GGCCTCTTCCTTAAAATGCCAAG 60.119 47.826 0.00 0.00 37.58 3.61
367 368 3.677148 GCCTCTTCCTTAAAATGCCAAGC 60.677 47.826 0.00 0.00 0.00 4.01
368 369 3.118992 CCTCTTCCTTAAAATGCCAAGCC 60.119 47.826 0.00 0.00 0.00 4.35
370 371 2.317371 TCCTTAAAATGCCAAGCCCA 57.683 45.000 0.00 0.00 0.00 5.36
371 372 2.614259 TCCTTAAAATGCCAAGCCCAA 58.386 42.857 0.00 0.00 0.00 4.12
372 373 2.566724 TCCTTAAAATGCCAAGCCCAAG 59.433 45.455 0.00 0.00 0.00 3.61
375 376 2.128290 AAAATGCCAAGCCCAAGCCC 62.128 55.000 0.00 0.00 41.25 5.19
379 380 3.373565 CCAAGCCCAAGCCCGTTC 61.374 66.667 0.00 0.00 41.25 3.95
380 381 2.597217 CAAGCCCAAGCCCGTTCA 60.597 61.111 0.00 0.00 41.25 3.18
381 382 2.282462 AAGCCCAAGCCCGTTCAG 60.282 61.111 0.00 0.00 41.25 3.02
382 383 3.868200 AAGCCCAAGCCCGTTCAGG 62.868 63.158 0.00 0.00 41.25 3.86
392 393 4.335647 CGTTCAGGCCCTGCTGGT 62.336 66.667 5.66 0.00 36.04 4.00
393 394 2.674380 GTTCAGGCCCTGCTGGTG 60.674 66.667 5.66 0.64 36.04 4.17
394 395 3.970410 TTCAGGCCCTGCTGGTGG 61.970 66.667 5.66 0.00 36.04 4.61
400 401 3.970410 CCCTGCTGGTGGGCTCAA 61.970 66.667 9.00 0.00 37.99 3.02
401 402 2.115910 CCTGCTGGTGGGCTCAAA 59.884 61.111 0.51 0.00 0.00 2.69
402 403 1.531365 CCTGCTGGTGGGCTCAAAA 60.531 57.895 0.51 0.00 0.00 2.44
403 404 1.662044 CTGCTGGTGGGCTCAAAAC 59.338 57.895 0.00 0.00 0.00 2.43
406 407 0.823356 GCTGGTGGGCTCAAAACTCA 60.823 55.000 0.00 0.00 0.00 3.41
407 408 1.242076 CTGGTGGGCTCAAAACTCAG 58.758 55.000 0.00 0.00 0.00 3.35
408 409 0.178992 TGGTGGGCTCAAAACTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
409 410 1.527433 GGTGGGCTCAAAACTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
411 412 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
412 413 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
413 414 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
414 415 0.600057 GCTCAAAACTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
459 460 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
460 461 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
465 466 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
466 467 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
467 468 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
483 484 4.394712 GCCTGGGTGGACCGACAG 62.395 72.222 0.00 3.58 44.64 3.51
484 485 3.706373 CCTGGGTGGACCGACAGG 61.706 72.222 12.75 12.75 44.64 4.00
485 486 3.706373 CTGGGTGGACCGACAGGG 61.706 72.222 2.79 0.00 44.64 4.45
492 493 4.083862 GACCGACAGGGCTGGGAC 62.084 72.222 0.00 0.00 44.23 4.46
495 496 3.691342 CGACAGGGCTGGGACGAA 61.691 66.667 0.00 0.00 34.19 3.85
496 497 2.266055 GACAGGGCTGGGACGAAG 59.734 66.667 0.00 0.00 34.19 3.79
499 500 1.153289 CAGGGCTGGGACGAAGATG 60.153 63.158 0.00 0.00 0.00 2.90
501 502 2.514824 GGCTGGGACGAAGATGGC 60.515 66.667 0.00 0.00 0.00 4.40
502 503 2.514824 GCTGGGACGAAGATGGCC 60.515 66.667 0.00 0.00 0.00 5.36
504 505 1.153289 CTGGGACGAAGATGGCCAG 60.153 63.158 13.05 0.00 0.00 4.85
507 508 0.744771 GGGACGAAGATGGCCAGAAC 60.745 60.000 13.05 5.34 0.00 3.01
508 509 0.250513 GGACGAAGATGGCCAGAACT 59.749 55.000 13.05 7.88 0.00 3.01
509 510 1.480954 GGACGAAGATGGCCAGAACTA 59.519 52.381 13.05 0.00 0.00 2.24
510 511 2.103263 GGACGAAGATGGCCAGAACTAT 59.897 50.000 13.05 0.00 0.00 2.12
511 512 3.321111 GGACGAAGATGGCCAGAACTATA 59.679 47.826 13.05 0.00 0.00 1.31
512 513 4.551388 GACGAAGATGGCCAGAACTATAG 58.449 47.826 13.05 0.00 0.00 1.31
513 514 3.243907 ACGAAGATGGCCAGAACTATAGC 60.244 47.826 13.05 1.42 0.00 2.97
514 515 3.006323 CGAAGATGGCCAGAACTATAGCT 59.994 47.826 13.05 0.00 0.00 3.32
515 516 4.314121 GAAGATGGCCAGAACTATAGCTG 58.686 47.826 13.05 0.00 0.00 4.24
521 522 3.281727 CCAGAACTATAGCTGGCCAAA 57.718 47.619 7.01 0.00 44.53 3.28
524 525 3.567164 CAGAACTATAGCTGGCCAAATGG 59.433 47.826 7.01 5.55 38.53 3.16
525 526 2.664402 ACTATAGCTGGCCAAATGGG 57.336 50.000 7.01 0.00 40.85 4.00
574 575 1.672854 CTTGGGCCAGGCATGACATG 61.673 60.000 15.19 11.27 0.00 3.21
575 576 2.152602 TTGGGCCAGGCATGACATGA 62.153 55.000 19.76 0.00 0.00 3.07
576 577 1.826921 GGGCCAGGCATGACATGAG 60.827 63.158 19.76 7.67 0.00 2.90
577 578 2.487532 GGCCAGGCATGACATGAGC 61.488 63.158 19.76 14.07 0.00 4.26
579 580 0.179037 GCCAGGCATGACATGAGCTA 60.179 55.000 19.76 0.00 0.00 3.32
580 581 1.748244 GCCAGGCATGACATGAGCTAA 60.748 52.381 19.76 0.00 0.00 3.09
581 582 2.646930 CCAGGCATGACATGAGCTAAA 58.353 47.619 19.76 0.00 0.00 1.85
582 583 2.357009 CCAGGCATGACATGAGCTAAAC 59.643 50.000 19.76 0.00 0.00 2.01
583 584 2.031314 CAGGCATGACATGAGCTAAACG 59.969 50.000 19.76 0.00 0.00 3.60
584 585 1.331756 GGCATGACATGAGCTAAACGG 59.668 52.381 19.76 0.00 0.00 4.44
586 587 1.331756 CATGACATGAGCTAAACGGGC 59.668 52.381 10.03 0.00 0.00 6.13
587 588 0.392461 TGACATGAGCTAAACGGGCC 60.392 55.000 0.00 0.00 0.00 5.80
589 590 2.180204 CATGAGCTAAACGGGCCGG 61.180 63.158 31.78 13.56 0.00 6.13
590 591 3.400599 ATGAGCTAAACGGGCCGGG 62.401 63.158 31.78 17.40 0.00 5.73
623 624 3.731728 GCCCTGGGTCATGCCTGA 61.732 66.667 15.56 0.00 37.43 3.86
624 625 2.593978 CCCTGGGTCATGCCTGAG 59.406 66.667 3.97 3.54 37.43 3.35
663 664 4.289312 GGCACAACCCGATTACGT 57.711 55.556 0.00 0.00 37.88 3.57
664 665 2.547026 GGCACAACCCGATTACGTT 58.453 52.632 0.00 0.00 37.88 3.99
665 666 0.876399 GGCACAACCCGATTACGTTT 59.124 50.000 0.00 0.00 37.88 3.60
667 668 2.287728 GGCACAACCCGATTACGTTTTT 60.288 45.455 0.00 0.00 37.88 1.94
711 712 9.866655 ATATATGGCCCAACATGTAAATATAGG 57.133 33.333 0.00 0.00 30.02 2.57
712 713 4.148838 TGGCCCAACATGTAAATATAGGC 58.851 43.478 0.00 4.05 37.14 3.93
713 714 4.141041 TGGCCCAACATGTAAATATAGGCT 60.141 41.667 0.00 0.00 37.98 4.58
714 715 5.073827 TGGCCCAACATGTAAATATAGGCTA 59.926 40.000 0.00 0.00 37.98 3.93
716 717 6.492087 GGCCCAACATGTAAATATAGGCTAAA 59.508 38.462 0.00 0.00 37.98 1.85
717 718 7.014808 GGCCCAACATGTAAATATAGGCTAAAA 59.985 37.037 0.00 0.00 37.98 1.52
719 720 9.744468 CCCAACATGTAAATATAGGCTAAAAAC 57.256 33.333 0.00 0.00 0.00 2.43
720 721 9.445786 CCAACATGTAAATATAGGCTAAAAACG 57.554 33.333 0.00 0.00 0.00 3.60
722 723 8.446599 ACATGTAAATATAGGCTAAAAACGCT 57.553 30.769 0.00 0.00 0.00 5.07
725 726 8.138365 TGTAAATATAGGCTAAAAACGCTCAG 57.862 34.615 0.00 0.00 0.00 3.35
726 727 7.767198 TGTAAATATAGGCTAAAAACGCTCAGT 59.233 33.333 0.00 0.00 0.00 3.41
727 728 6.604735 AATATAGGCTAAAAACGCTCAGTG 57.395 37.500 0.00 0.00 0.00 3.66
728 729 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
740 741 3.109230 GCTCAGTGCGTCAAATAACAG 57.891 47.619 0.00 0.00 0.00 3.16
741 742 2.159653 GCTCAGTGCGTCAAATAACAGG 60.160 50.000 0.00 0.00 0.00 4.00
742 743 1.804151 TCAGTGCGTCAAATAACAGGC 59.196 47.619 0.00 0.00 0.00 4.85
743 744 1.806542 CAGTGCGTCAAATAACAGGCT 59.193 47.619 0.00 0.00 0.00 4.58
744 745 1.806542 AGTGCGTCAAATAACAGGCTG 59.193 47.619 14.16 14.16 0.00 4.85
746 747 2.225491 GTGCGTCAAATAACAGGCTGAA 59.775 45.455 23.66 9.24 0.00 3.02
747 748 2.881513 TGCGTCAAATAACAGGCTGAAA 59.118 40.909 23.66 8.84 0.00 2.69
748 749 3.316588 TGCGTCAAATAACAGGCTGAAAA 59.683 39.130 23.66 6.07 0.00 2.29
750 751 5.182190 TGCGTCAAATAACAGGCTGAAAATA 59.818 36.000 23.66 8.85 0.00 1.40
751 752 6.127758 TGCGTCAAATAACAGGCTGAAAATAT 60.128 34.615 23.66 10.72 0.00 1.28
752 753 6.197096 GCGTCAAATAACAGGCTGAAAATATG 59.803 38.462 23.66 12.30 0.00 1.78
755 756 7.221452 GTCAAATAACAGGCTGAAAATATGCAG 59.779 37.037 23.66 7.69 35.28 4.41
756 757 5.779529 ATAACAGGCTGAAAATATGCAGG 57.220 39.130 23.66 0.00 32.83 4.85
760 761 2.214387 GCTGAAAATATGCAGGCCAC 57.786 50.000 5.01 0.00 32.83 5.01
761 762 1.202452 GCTGAAAATATGCAGGCCACC 60.202 52.381 5.01 0.00 32.83 4.61
762 763 2.101783 CTGAAAATATGCAGGCCACCA 58.898 47.619 5.01 0.54 0.00 4.17
764 765 2.431419 TGAAAATATGCAGGCCACCATG 59.569 45.455 15.97 2.04 0.00 3.66
765 766 0.754472 AAATATGCAGGCCACCATGC 59.246 50.000 15.97 12.28 42.86 4.06
766 767 0.105862 AATATGCAGGCCACCATGCT 60.106 50.000 15.02 4.54 42.98 3.79
767 768 0.773014 ATATGCAGGCCACCATGCTA 59.227 50.000 15.02 6.36 42.98 3.49
768 769 0.550432 TATGCAGGCCACCATGCTAA 59.450 50.000 15.02 1.59 42.98 3.09
769 770 0.324552 ATGCAGGCCACCATGCTAAA 60.325 50.000 15.02 0.00 42.98 1.85
770 771 1.250154 TGCAGGCCACCATGCTAAAC 61.250 55.000 15.02 0.00 42.98 2.01
772 773 0.960364 CAGGCCACCATGCTAAACGT 60.960 55.000 5.01 0.00 0.00 3.99
773 774 0.960364 AGGCCACCATGCTAAACGTG 60.960 55.000 5.01 0.00 34.83 4.49
774 775 1.154035 GCCACCATGCTAAACGTGC 60.154 57.895 0.00 0.00 33.60 5.34
775 776 1.506262 CCACCATGCTAAACGTGCC 59.494 57.895 0.00 0.00 33.60 5.01
776 777 1.134487 CACCATGCTAAACGTGCCG 59.866 57.895 0.00 0.00 33.60 5.69
777 778 1.004320 ACCATGCTAAACGTGCCGA 60.004 52.632 0.00 0.00 33.60 5.54
778 779 1.296056 ACCATGCTAAACGTGCCGAC 61.296 55.000 0.00 0.00 33.60 4.79
779 780 1.423845 CATGCTAAACGTGCCGACC 59.576 57.895 0.00 0.00 0.00 4.79
785 786 4.679412 AACGTGCCGACCGTTTAT 57.321 50.000 0.00 0.00 45.46 1.40
786 787 2.917172 AACGTGCCGACCGTTTATT 58.083 47.368 0.00 0.00 45.46 1.40
787 788 1.228533 AACGTGCCGACCGTTTATTT 58.771 45.000 0.00 0.00 45.46 1.40
789 790 2.620242 ACGTGCCGACCGTTTATTTAT 58.380 42.857 1.50 0.00 34.28 1.40
790 791 3.002102 ACGTGCCGACCGTTTATTTATT 58.998 40.909 1.50 0.00 34.28 1.40
791 792 3.181518 ACGTGCCGACCGTTTATTTATTG 60.182 43.478 1.50 0.00 34.28 1.90
793 794 3.127376 GTGCCGACCGTTTATTTATTGGT 59.873 43.478 0.00 0.00 35.14 3.67
794 795 3.374678 TGCCGACCGTTTATTTATTGGTC 59.625 43.478 0.00 0.00 44.43 4.02
799 800 5.257082 ACCGTTTATTTATTGGTCATGCC 57.743 39.130 0.00 0.00 37.90 4.40
800 801 4.953579 ACCGTTTATTTATTGGTCATGCCT 59.046 37.500 7.54 0.00 38.35 4.75
803 804 5.600696 GTTTATTTATTGGTCATGCCTGGG 58.399 41.667 7.54 0.00 38.35 4.45
805 806 0.396974 TTATTGGTCATGCCTGGGCC 60.397 55.000 9.28 0.00 41.09 5.80
806 807 1.288508 TATTGGTCATGCCTGGGCCT 61.289 55.000 4.53 0.00 41.09 5.19
807 808 2.866523 ATTGGTCATGCCTGGGCCTG 62.867 60.000 4.53 9.68 41.09 4.85
809 810 4.828296 GTCATGCCTGGGCCTGGG 62.828 72.222 28.34 19.52 41.09 4.45
851 852 2.833631 GGCACAGCCCGTATAGTAAT 57.166 50.000 0.00 0.00 44.06 1.89
853 854 2.325761 GCACAGCCCGTATAGTAATCG 58.674 52.381 0.00 0.00 0.00 3.34
854 855 2.288030 GCACAGCCCGTATAGTAATCGT 60.288 50.000 0.00 0.00 0.00 3.73
855 856 3.305964 CACAGCCCGTATAGTAATCGTG 58.694 50.000 0.00 0.00 0.00 4.35
856 857 2.288030 ACAGCCCGTATAGTAATCGTGC 60.288 50.000 0.00 0.00 0.00 5.34
857 858 1.271656 AGCCCGTATAGTAATCGTGCC 59.728 52.381 2.50 0.00 0.00 5.01
858 859 1.670967 GCCCGTATAGTAATCGTGCCC 60.671 57.143 0.00 0.00 0.00 5.36
860 861 2.352421 CCCGTATAGTAATCGTGCCCTG 60.352 54.545 0.00 0.00 0.00 4.45
861 862 2.352421 CCGTATAGTAATCGTGCCCTGG 60.352 54.545 0.00 0.00 0.00 4.45
862 863 2.685100 GTATAGTAATCGTGCCCTGGC 58.315 52.381 0.00 0.00 42.35 4.85
863 864 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
864 865 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
892 893 1.227556 GGCCAGGCACGATTACGAT 60.228 57.895 15.19 0.00 42.66 3.73
893 894 1.498865 GGCCAGGCACGATTACGATG 61.499 60.000 15.19 0.00 42.66 3.84
894 895 1.498865 GCCAGGCACGATTACGATGG 61.499 60.000 6.55 0.00 42.66 3.51
896 897 1.227556 AGGCACGATTACGATGGGC 60.228 57.895 0.00 0.00 42.66 5.36
897 898 2.251642 GGCACGATTACGATGGGCC 61.252 63.158 0.00 0.00 42.66 5.80
899 900 1.954146 CACGATTACGATGGGCCGG 60.954 63.158 0.00 0.00 42.66 6.13
900 901 2.357034 CGATTACGATGGGCCGGG 60.357 66.667 2.18 0.00 42.66 5.73
901 902 2.668550 GATTACGATGGGCCGGGC 60.669 66.667 22.00 22.00 0.00 6.13
1021 1024 0.534873 GCTCGGCTTCTCTTCTTCCT 59.465 55.000 0.00 0.00 0.00 3.36
1068 1071 3.742248 CTCCCTCCCCTCCGTCTCC 62.742 73.684 0.00 0.00 0.00 3.71
1072 1075 3.336568 TCCCCTCCGTCTCCGTCT 61.337 66.667 0.00 0.00 0.00 4.18
1110 1113 3.411517 AATCCCCGCCACTCCCAG 61.412 66.667 0.00 0.00 0.00 4.45
1144 1147 1.220749 GCCAGCTCCACCGAACATA 59.779 57.895 0.00 0.00 0.00 2.29
1284 1293 1.802960 GTCTTCACCGACTACGTGAGA 59.197 52.381 0.00 0.00 37.88 3.27
1285 1294 1.802960 TCTTCACCGACTACGTGAGAC 59.197 52.381 0.00 0.00 37.88 3.36
1388 1407 1.539280 GGGAAGATAAGCTGCCTCGAC 60.539 57.143 0.00 0.00 42.69 4.20
1504 1523 2.787994 CTTGGGTTCACATCTGCTCTT 58.212 47.619 0.00 0.00 0.00 2.85
1517 1536 3.070018 TCTGCTCTTTTAGTGCTTCTGC 58.930 45.455 0.00 0.00 35.86 4.26
1547 1566 0.601558 TGAACCTCGGTGTGCTAGAC 59.398 55.000 0.00 0.00 0.00 2.59
1555 1574 1.731424 CGGTGTGCTAGACAGGTTACG 60.731 57.143 0.00 0.00 34.28 3.18
1613 1638 7.420800 CATTTTGAGTGTTGGCCTATAGATTC 58.579 38.462 3.32 0.00 0.00 2.52
1639 1712 1.900498 AGTGCTGGGTTCTTGCAGC 60.900 57.895 0.00 0.00 40.74 5.25
1816 1897 4.220821 TCTTTAGGCCTAGGCATTAGATCG 59.779 45.833 34.09 14.27 44.11 3.69
1818 1899 0.737715 GGCCTAGGCATTAGATCGCG 60.738 60.000 34.09 0.00 44.11 5.87
1831 1912 6.517714 GCATTAGATCGCGAAAACATGATTAG 59.482 38.462 15.24 0.00 0.00 1.73
1877 1958 4.657824 ACGTTGGTCCGTGGCTCG 62.658 66.667 1.28 1.28 40.08 5.03
1915 1996 0.253820 ATCCTTCCATCCCAGTGGGT 60.254 55.000 27.87 12.59 44.74 4.51
1916 1997 0.914417 TCCTTCCATCCCAGTGGGTC 60.914 60.000 27.87 0.00 44.74 4.46
1917 1998 1.221840 CTTCCATCCCAGTGGGTCG 59.778 63.158 27.87 18.80 44.74 4.79
1918 1999 1.537889 TTCCATCCCAGTGGGTCGT 60.538 57.895 27.87 12.48 44.74 4.34
1919 2000 0.252330 TTCCATCCCAGTGGGTCGTA 60.252 55.000 27.87 9.12 44.74 3.43
1920 2001 0.686441 TCCATCCCAGTGGGTCGTAG 60.686 60.000 27.87 13.15 44.74 3.51
1921 2002 0.976073 CCATCCCAGTGGGTCGTAGT 60.976 60.000 27.87 5.71 44.74 2.73
1922 2003 0.460311 CATCCCAGTGGGTCGTAGTC 59.540 60.000 27.87 0.00 44.74 2.59
1923 2004 0.335361 ATCCCAGTGGGTCGTAGTCT 59.665 55.000 27.87 1.29 44.74 3.24
2425 2715 6.814644 CGTATGAATAACCTACAACTTCCACA 59.185 38.462 0.00 0.00 0.00 4.17
2472 2762 4.771590 TGAAATCTTTAGTGCCTTGCAG 57.228 40.909 0.00 0.00 40.08 4.41
2554 2845 3.494850 CCATATTGGTCGGGTGCTT 57.505 52.632 0.00 0.00 31.35 3.91
2555 2846 1.762708 CCATATTGGTCGGGTGCTTT 58.237 50.000 0.00 0.00 31.35 3.51
2586 2877 4.553330 AATCGGTGAATCGCCCTATTAT 57.447 40.909 7.33 0.00 0.00 1.28
2638 2929 1.218844 GGTTAACCAGGGCCCTATCA 58.781 55.000 28.13 7.28 35.64 2.15
2671 2962 5.225227 AGGCTTAATAGGTTAACTAGGGCT 58.775 41.667 5.42 5.40 34.56 5.19
2725 3016 1.067516 ACAGCAGCAACACCAATGTTC 59.932 47.619 0.00 0.00 46.46 3.18
2726 3017 0.675633 AGCAGCAACACCAATGTTCC 59.324 50.000 0.00 0.00 46.46 3.62
2744 3035 1.768275 TCCAAAGGAGAGCACAACAGA 59.232 47.619 0.00 0.00 0.00 3.41
2825 3116 1.000274 GTTTACCTTGCTGTTGCCTGG 60.000 52.381 0.00 0.00 38.71 4.45
2978 3269 3.734735 GGTCCGAATAGCGATTAACTGAC 59.265 47.826 0.00 0.00 44.57 3.51
2979 3270 3.734735 GTCCGAATAGCGATTAACTGACC 59.265 47.826 0.00 0.00 44.57 4.02
2980 3271 2.724690 CCGAATAGCGATTAACTGACCG 59.275 50.000 0.00 0.00 44.57 4.79
2981 3272 3.549423 CCGAATAGCGATTAACTGACCGA 60.549 47.826 0.00 0.00 44.57 4.69
2982 3273 3.664486 CGAATAGCGATTAACTGACCGAG 59.336 47.826 0.00 0.00 44.57 4.63
2983 3274 4.554134 CGAATAGCGATTAACTGACCGAGA 60.554 45.833 0.00 0.00 44.57 4.04
2984 3275 5.455056 AATAGCGATTAACTGACCGAGAT 57.545 39.130 0.00 0.00 0.00 2.75
2985 3276 3.085443 AGCGATTAACTGACCGAGATG 57.915 47.619 0.00 0.00 0.00 2.90
2988 3279 2.791560 CGATTAACTGACCGAGATGCTG 59.208 50.000 0.00 0.00 0.00 4.41
3002 3293 2.105477 AGATGCTGATTAACTGGCCGAT 59.895 45.455 0.00 0.00 0.00 4.18
3003 3294 3.324846 AGATGCTGATTAACTGGCCGATA 59.675 43.478 0.00 0.00 0.00 2.92
3192 3483 8.632679 GGATTTCTTTAAATGATCTGCCATGTA 58.367 33.333 0.00 0.00 35.41 2.29
3352 3656 4.630644 AGATGACACATGTGAGAAGGTT 57.369 40.909 31.94 7.77 0.00 3.50
3354 3658 4.758674 AGATGACACATGTGAGAAGGTTTG 59.241 41.667 31.94 1.74 0.00 2.93
3411 3723 4.818534 TGCTACAAGTCTTGCTTTGAAG 57.181 40.909 12.66 2.66 34.69 3.02
3412 3724 4.199310 TGCTACAAGTCTTGCTTTGAAGT 58.801 39.130 12.66 0.00 34.69 3.01
3413 3725 4.640201 TGCTACAAGTCTTGCTTTGAAGTT 59.360 37.500 12.66 0.00 34.69 2.66
3414 3726 5.820423 TGCTACAAGTCTTGCTTTGAAGTTA 59.180 36.000 12.66 0.00 34.69 2.24
3415 3727 6.017934 TGCTACAAGTCTTGCTTTGAAGTTAG 60.018 38.462 12.66 4.90 34.69 2.34
3416 3728 6.202954 GCTACAAGTCTTGCTTTGAAGTTAGA 59.797 38.462 12.66 0.00 34.69 2.10
3417 3729 7.254795 GCTACAAGTCTTGCTTTGAAGTTAGAA 60.255 37.037 12.66 0.00 34.69 2.10
3418 3730 7.573968 ACAAGTCTTGCTTTGAAGTTAGAAT 57.426 32.000 12.66 0.00 34.69 2.40
3584 3912 7.455641 TTTGGACAAGTTTTCACTTTCAGTA 57.544 32.000 0.00 0.00 40.66 2.74
3676 4010 1.065709 GTCGCTTGGGATGGTTCCTTA 60.066 52.381 0.00 0.00 42.20 2.69
3822 4168 1.078143 GGCCGAAGCTCCTCATTGT 60.078 57.895 0.00 0.00 39.73 2.71
3836 4182 1.407618 TCATTGTACCGAGGATCCACG 59.592 52.381 22.94 22.94 0.00 4.94
3838 4184 0.528924 TTGTACCGAGGATCCACGTG 59.471 55.000 26.58 20.32 0.00 4.49
3840 4186 0.813184 GTACCGAGGATCCACGTGAA 59.187 55.000 26.58 11.32 0.00 3.18
4017 4364 3.536158 CACAAACTTGGTGGTATGACG 57.464 47.619 0.00 0.00 32.65 4.35
4049 4408 3.708236 TTCCTCTAGGAGCTTACCCAT 57.292 47.619 0.00 0.00 46.36 4.00
4079 4438 2.231716 ACTAATTGTCTTTGGGCCCC 57.768 50.000 22.27 3.07 0.00 5.80
4160 4528 7.306807 GCAAGTAATTTGAGCTTGGTTTCTTTC 60.307 37.037 0.00 0.00 39.75 2.62
4161 4529 7.588497 AGTAATTTGAGCTTGGTTTCTTTCT 57.412 32.000 0.00 0.00 0.00 2.52
4281 4657 2.351111 GTGATCTTGAGCAGCTAAGCAC 59.649 50.000 0.00 0.00 36.85 4.40
4385 4770 3.504906 AGCAATGAGTCCATTCACAGTTG 59.495 43.478 0.00 0.00 40.81 3.16
4454 4840 2.894126 AGGTGATCTAATGTCTAGGCCG 59.106 50.000 0.00 0.00 0.00 6.13
4541 4929 0.956410 TCGTAATGTGGCCCAAACGG 60.956 55.000 21.24 10.81 37.22 4.44
4666 5769 0.037326 TTGCCTCATCTGACACCGAC 60.037 55.000 0.00 0.00 0.00 4.79
4681 5784 3.168193 CACCGACGCCAACATTTTTATC 58.832 45.455 0.00 0.00 0.00 1.75
5060 6211 2.418083 GCCATTTGAGAAGCCCGGG 61.418 63.158 19.09 19.09 0.00 5.73
5140 6293 8.294341 TCAGTATTCGTAGCATTAACATTAGC 57.706 34.615 0.00 0.00 0.00 3.09
5218 6474 4.322567 GCTCATCTTTCTTGAGGACTTGT 58.677 43.478 3.16 0.00 40.77 3.16
5369 6772 6.117911 TGTTAATGCTACGAATGTTGATGG 57.882 37.500 0.00 0.00 0.00 3.51
5370 6773 5.877564 TGTTAATGCTACGAATGTTGATGGA 59.122 36.000 0.00 0.00 0.00 3.41
5371 6774 6.037062 TGTTAATGCTACGAATGTTGATGGAG 59.963 38.462 0.00 0.00 0.00 3.86
5372 6775 3.885724 TGCTACGAATGTTGATGGAGA 57.114 42.857 0.00 0.00 0.00 3.71
5514 6920 9.950680 TTTAAGTTGATTTCTCTTGAATGTCAC 57.049 29.630 0.00 0.00 31.50 3.67
5548 6954 1.684983 AGCTGCAACTGCTCATTTTGT 59.315 42.857 1.02 0.00 42.66 2.83
5567 6973 8.585018 CATTTTGTTAACTCCTTGTAGGGATTT 58.415 33.333 7.22 0.00 35.59 2.17
5643 7049 6.708502 TGGAATTGAAGTCGATGTTGAAACTA 59.291 34.615 0.00 0.00 0.00 2.24
5822 8301 6.909550 AGTGTAATAAAAATGTTGGCCTCA 57.090 33.333 3.32 3.67 0.00 3.86
5850 8329 7.488150 TGTCAGACGAGACAAATTATACATGTC 59.512 37.037 0.00 0.00 44.92 3.06
5867 8346 6.194796 ACATGTCATTCCTTAACGATTTGG 57.805 37.500 0.00 0.00 0.00 3.28
5916 8397 6.234177 AGATGAGAAGAAATGGAAAGACGTT 58.766 36.000 0.00 0.00 0.00 3.99
5924 8405 7.653767 AGAAATGGAAAGACGTTAGTAACTG 57.346 36.000 11.17 7.27 0.00 3.16
6312 8794 5.241403 TCCATAAGCCTGAAAAGAACTGA 57.759 39.130 0.00 0.00 0.00 3.41
6399 8881 1.202417 CGTGACATAGGCTCGGTGAAT 60.202 52.381 0.00 0.00 0.00 2.57
6473 8955 1.107538 CGTCGGAGATGGCCTTCCTA 61.108 60.000 14.77 3.61 40.43 2.94
6512 8994 5.546621 CCTAGATCGGTTTAGGGATTTGA 57.453 43.478 4.31 0.00 34.13 2.69
6615 9105 0.179062 GATCAGGCAGCCGAGACAAT 60.179 55.000 5.55 0.00 0.00 2.71
6717 9208 4.049546 TGTTACGTTATCCTTCCATCCG 57.950 45.455 0.00 0.00 0.00 4.18
6720 9211 1.068741 ACGTTATCCTTCCATCCGAGC 59.931 52.381 0.00 0.00 0.00 5.03
6848 9344 9.736023 GCCATTGTCTTATTTATTTTCCTACTG 57.264 33.333 0.00 0.00 0.00 2.74
6855 9351 8.458843 TCTTATTTATTTTCCTACTGCAGTTGC 58.541 33.333 27.06 0.00 42.50 4.17
6929 9433 3.557508 GGCATTTTGCTTTGTTTCATGC 58.442 40.909 0.00 0.00 44.28 4.06
6930 9434 3.003482 GGCATTTTGCTTTGTTTCATGCA 59.997 39.130 0.00 0.00 44.28 3.96
6931 9435 3.969981 GCATTTTGCTTTGTTTCATGCAC 59.030 39.130 0.00 0.00 40.96 4.57
6932 9436 4.260866 GCATTTTGCTTTGTTTCATGCACT 60.261 37.500 0.00 0.00 40.96 4.40
6933 9437 5.731126 GCATTTTGCTTTGTTTCATGCACTT 60.731 36.000 0.00 0.00 40.96 3.16
6934 9438 4.861389 TTTGCTTTGTTTCATGCACTTG 57.139 36.364 0.00 0.00 35.01 3.16
6935 9439 3.523606 TGCTTTGTTTCATGCACTTGT 57.476 38.095 0.00 0.00 0.00 3.16
6936 9440 3.188492 TGCTTTGTTTCATGCACTTGTG 58.812 40.909 0.00 0.00 0.00 3.33
6955 9459 8.720562 CACTTGTGTCATTGACTATTATTGACA 58.279 33.333 17.26 8.04 43.07 3.58
6957 9461 9.764870 CTTGTGTCATTGACTATTATTGACAAG 57.235 33.333 19.31 19.31 45.73 3.16
6966 9470 9.890629 TTGACTATTATTGACAAGTGCTAGAAT 57.109 29.630 0.00 0.00 0.00 2.40
6967 9471 9.890629 TGACTATTATTGACAAGTGCTAGAATT 57.109 29.630 0.00 0.00 0.00 2.17
6970 9474 9.941664 CTATTATTGACAAGTGCTAGAATTTGG 57.058 33.333 10.50 0.00 0.00 3.28
6971 9475 7.994425 TTATTGACAAGTGCTAGAATTTGGA 57.006 32.000 10.50 0.00 0.00 3.53
6972 9476 5.689383 TTGACAAGTGCTAGAATTTGGAC 57.311 39.130 10.50 5.06 0.00 4.02
6973 9477 4.973168 TGACAAGTGCTAGAATTTGGACT 58.027 39.130 10.50 0.00 36.44 3.85
6974 9478 5.376625 TGACAAGTGCTAGAATTTGGACTT 58.623 37.500 10.50 7.67 43.72 3.01
7580 10095 2.789893 GCTGTTCGATTCTCGGTCATAC 59.210 50.000 0.00 0.00 40.88 2.39
7608 10123 7.913674 AAGGTCTGTATTGAACTTGAATCTC 57.086 36.000 0.00 0.00 41.84 2.75
7609 10124 7.009179 AGGTCTGTATTGAACTTGAATCTCA 57.991 36.000 0.00 0.00 27.98 3.27
7734 10249 7.458409 AGTGTCTGACATTAAATTCAGCAAT 57.542 32.000 14.37 8.84 39.36 3.56
7844 10359 7.823149 ATAATTGCAGAATTTTGCTTCAGAC 57.177 32.000 20.35 0.00 44.38 3.51
7865 10380 1.783284 TCGAGCTGTAAAGTGCACAG 58.217 50.000 21.04 8.33 45.08 3.66
7963 10478 0.035152 TGGAGCCATCTCGCAACATT 60.035 50.000 0.00 0.00 40.26 2.71
8067 10582 3.808466 TTCTGCTGCATACTACCTCTG 57.192 47.619 1.31 0.00 0.00 3.35
8077 10752 4.404715 GCATACTACCTCTGAACTTACCCA 59.595 45.833 0.00 0.00 0.00 4.51
8214 10890 3.627577 CACCTTCAACTTGTGTGTAGCTT 59.372 43.478 0.00 0.00 0.00 3.74
8286 10964 8.705048 TTTCACGCCAAGTAAAAAGTTAAAAT 57.295 26.923 0.00 0.00 0.00 1.82
8321 10999 9.896645 GATGATAATACATCTGATATGGTGGTT 57.103 33.333 0.00 0.00 42.09 3.67
8416 11095 2.736670 AGAAAAAGCACTGACCAGGT 57.263 45.000 0.00 0.00 0.00 4.00
8549 11228 7.323656 CCACTTTCTTAAACTTTGATTACAGCG 59.676 37.037 0.00 0.00 0.00 5.18
8887 11571 7.775053 TGTATTGAAGTGCTCCCTTTATTTT 57.225 32.000 0.00 0.00 0.00 1.82
8936 11624 6.716628 TGCTCATTATTTTCTCTTGTGGTTCT 59.283 34.615 0.00 0.00 0.00 3.01
8952 11640 5.867174 TGTGGTTCTGTCATCGTACATAAAG 59.133 40.000 0.00 0.00 0.00 1.85
8961 11649 2.093890 TCGTACATAAAGTCGCCCTGA 58.906 47.619 0.00 0.00 0.00 3.86
9062 11752 7.770897 ACAGGGTAGACTTTTGCTTAGAATATG 59.229 37.037 0.00 0.00 0.00 1.78
9086 11776 1.694150 AGCTGGCCTTCTTATATCGCA 59.306 47.619 3.32 0.00 0.00 5.10
9126 11817 7.295672 TCCTGATATTCTTTATCACCCCAAGAT 59.704 37.037 0.00 0.00 31.39 2.40
9141 11832 2.810274 CCAAGATGATGAGGGCATAACG 59.190 50.000 0.00 0.00 34.11 3.18
9149 11840 3.247006 TGAGGGCATAACGTTCTCTTC 57.753 47.619 2.82 0.00 0.00 2.87
9150 11841 2.565391 TGAGGGCATAACGTTCTCTTCA 59.435 45.455 2.82 2.61 0.00 3.02
9156 11847 5.335661 GGGCATAACGTTCTCTTCAATTTGT 60.336 40.000 2.82 0.00 0.00 2.83
9157 11848 5.569059 GGCATAACGTTCTCTTCAATTTGTG 59.431 40.000 2.82 0.00 0.00 3.33
9158 11849 6.142817 GCATAACGTTCTCTTCAATTTGTGT 58.857 36.000 2.82 0.00 0.00 3.72
9161 11852 8.708742 CATAACGTTCTCTTCAATTTGTGTAGA 58.291 33.333 2.82 0.00 33.11 2.59
9162 11853 7.730364 AACGTTCTCTTCAATTTGTGTAGAT 57.270 32.000 0.00 0.00 33.62 1.98
9163 11854 7.730364 ACGTTCTCTTCAATTTGTGTAGATT 57.270 32.000 0.00 0.00 33.62 2.40
9164 11855 8.827177 ACGTTCTCTTCAATTTGTGTAGATTA 57.173 30.769 0.00 0.00 33.62 1.75
9195 11899 2.622436 GGAACCTGATCCTTCTTGTCG 58.378 52.381 0.00 0.00 36.50 4.35
9219 11923 5.123344 GCCTTGTTATTCTTAGAAAAGCCGA 59.877 40.000 0.00 0.00 32.36 5.54
9220 11924 6.543736 CCTTGTTATTCTTAGAAAAGCCGAC 58.456 40.000 0.00 0.00 32.36 4.79
9228 11932 6.399204 TCTTAGAAAAGCCGACGAATTAAC 57.601 37.500 0.00 0.00 32.36 2.01
9230 11934 3.404899 AGAAAAGCCGACGAATTAACCA 58.595 40.909 0.00 0.00 0.00 3.67
9231 11935 3.187842 AGAAAAGCCGACGAATTAACCAC 59.812 43.478 0.00 0.00 0.00 4.16
9233 11937 1.722011 AGCCGACGAATTAACCACTG 58.278 50.000 0.00 0.00 0.00 3.66
9234 11938 0.096454 GCCGACGAATTAACCACTGC 59.904 55.000 0.00 0.00 0.00 4.40
9235 11939 1.722011 CCGACGAATTAACCACTGCT 58.278 50.000 0.00 0.00 0.00 4.24
9236 11940 2.883574 CCGACGAATTAACCACTGCTA 58.116 47.619 0.00 0.00 0.00 3.49
9237 11941 2.858344 CCGACGAATTAACCACTGCTAG 59.142 50.000 0.00 0.00 0.00 3.42
9238 11942 2.281762 CGACGAATTAACCACTGCTAGC 59.718 50.000 8.10 8.10 0.00 3.42
9239 11943 3.522553 GACGAATTAACCACTGCTAGCT 58.477 45.455 17.23 0.00 0.00 3.32
9249 11956 9.681062 ATTAACCACTGCTAGCTTTATTCTTAA 57.319 29.630 17.23 9.08 0.00 1.85
9277 11984 4.321899 GCCAATGATTTAAACCACTGCTGA 60.322 41.667 0.00 0.00 0.00 4.26
9286 11993 8.642908 ATTTAAACCACTGCTGACTTTTAAAC 57.357 30.769 15.55 0.00 33.53 2.01
9287 11994 5.652994 AAACCACTGCTGACTTTTAAACA 57.347 34.783 0.00 0.00 0.00 2.83
9295 12002 5.636837 TGCTGACTTTTAAACAGTGTTGAC 58.363 37.500 9.79 0.00 34.60 3.18
9297 12004 6.127758 TGCTGACTTTTAAACAGTGTTGACAT 60.128 34.615 9.79 0.00 34.60 3.06
9298 12005 7.066404 TGCTGACTTTTAAACAGTGTTGACATA 59.934 33.333 9.79 0.00 34.60 2.29
9300 12007 8.500753 TGACTTTTAAACAGTGTTGACATACT 57.499 30.769 9.79 0.00 0.00 2.12
9301 12008 8.952278 TGACTTTTAAACAGTGTTGACATACTT 58.048 29.630 9.79 0.00 0.00 2.24
9302 12009 9.783256 GACTTTTAAACAGTGTTGACATACTTT 57.217 29.630 9.79 0.00 0.00 2.66
9335 12042 2.989422 GGTTGCTTACCACATGTGTC 57.011 50.000 23.79 8.37 46.92 3.67
9336 12043 2.226330 GGTTGCTTACCACATGTGTCA 58.774 47.619 23.79 8.71 46.92 3.58
9337 12044 2.031157 GGTTGCTTACCACATGTGTCAC 60.031 50.000 23.79 9.40 46.92 3.67
9338 12045 2.616376 GTTGCTTACCACATGTGTCACA 59.384 45.455 23.79 8.40 0.00 3.58
9339 12046 3.138884 TGCTTACCACATGTGTCACAT 57.861 42.857 23.79 12.87 39.91 3.21
9362 12069 5.406649 TGGTTGCTGACTGTAAAACTTTTG 58.593 37.500 0.00 0.00 0.00 2.44
9389 12096 9.846248 AAAGATATCAGAACAATTACAAACAGC 57.154 29.630 5.32 0.00 0.00 4.40
9390 12097 8.565896 AGATATCAGAACAATTACAAACAGCA 57.434 30.769 5.32 0.00 0.00 4.41
9391 12098 9.182214 AGATATCAGAACAATTACAAACAGCAT 57.818 29.630 5.32 0.00 0.00 3.79
9392 12099 9.793252 GATATCAGAACAATTACAAACAGCATT 57.207 29.630 0.00 0.00 0.00 3.56
9511 12233 4.754114 GCAGATTCATCTTACATCCACCTC 59.246 45.833 0.00 0.00 34.22 3.85
9528 12250 9.123902 CATCCACCTCATTTCATGTCTATTTTA 57.876 33.333 0.00 0.00 0.00 1.52
9544 12267 8.677300 TGTCTATTTTAGCACTGATGATTTTCC 58.323 33.333 0.00 0.00 0.00 3.13
9555 12278 7.678218 GCACTGATGATTTTCCTTAGCAGTAAG 60.678 40.741 0.00 0.00 33.99 2.34
9575 12298 5.520748 AAGTTGAAGAACTACCATGGGAT 57.479 39.130 18.09 0.00 41.87 3.85
9607 12330 8.737168 TGCTAACTTCTCTAATGCAACAATAT 57.263 30.769 0.00 0.00 0.00 1.28
9694 12417 3.013921 GTCCATCAAACCCGAAATAGCA 58.986 45.455 0.00 0.00 0.00 3.49
9727 12453 1.778017 TTACTGGGAGCAGCAAGGCA 61.778 55.000 0.00 0.00 35.83 4.75
9768 12494 5.571357 GCACTAAACCATAAAATCAACACCG 59.429 40.000 0.00 0.00 0.00 4.94
9790 12516 4.746611 CGCTAGTCATCTATCAAACATGCA 59.253 41.667 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.154205 AGCCTATGCGTGCTTAAGCG 61.154 55.000 21.97 10.25 43.36 4.68
10 11 1.613925 CCTAGAGCCTATGCGTGCTTA 59.386 52.381 0.00 0.00 44.33 3.09
12 13 2.045280 CCTAGAGCCTATGCGTGCT 58.955 57.895 0.00 0.00 44.33 4.40
13 14 1.666234 GCCTAGAGCCTATGCGTGC 60.666 63.158 0.00 0.00 44.33 5.34
17 18 0.601311 CCAACGCCTAGAGCCTATGC 60.601 60.000 0.00 0.00 38.78 3.14
18 19 0.601311 GCCAACGCCTAGAGCCTATG 60.601 60.000 0.00 0.00 38.78 2.23
19 20 1.048724 TGCCAACGCCTAGAGCCTAT 61.049 55.000 0.00 0.00 38.78 2.57
21 22 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
22 23 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
23 24 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
24 25 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
25 26 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
87 88 4.156182 GTTTTACTGACCAAAGCGTATGC 58.844 43.478 0.00 0.00 43.24 3.14
88 89 4.391358 CGTTTTACTGACCAAAGCGTATG 58.609 43.478 0.00 0.00 35.64 2.39
89 90 3.120442 GCGTTTTACTGACCAAAGCGTAT 60.120 43.478 6.06 0.00 40.37 3.06
90 91 2.221517 GCGTTTTACTGACCAAAGCGTA 59.778 45.455 6.06 0.00 40.37 4.42
91 92 1.003223 GCGTTTTACTGACCAAAGCGT 60.003 47.619 6.06 0.00 40.37 5.07
92 93 1.003331 TGCGTTTTACTGACCAAAGCG 60.003 47.619 0.00 0.00 40.94 4.68
93 94 2.766970 TGCGTTTTACTGACCAAAGC 57.233 45.000 0.00 0.00 0.00 3.51
94 95 3.628017 CCTTGCGTTTTACTGACCAAAG 58.372 45.455 0.00 0.00 0.00 2.77
95 96 2.223618 GCCTTGCGTTTTACTGACCAAA 60.224 45.455 0.00 0.00 0.00 3.28
96 97 1.335496 GCCTTGCGTTTTACTGACCAA 59.665 47.619 0.00 0.00 0.00 3.67
97 98 0.948678 GCCTTGCGTTTTACTGACCA 59.051 50.000 0.00 0.00 0.00 4.02
112 113 1.526455 TGCGTTTTACCACCGCCTT 60.526 52.632 0.00 0.00 46.44 4.35
113 114 2.111460 TGCGTTTTACCACCGCCT 59.889 55.556 0.00 0.00 46.44 5.52
114 115 2.061182 TTGTGCGTTTTACCACCGCC 62.061 55.000 0.00 0.00 46.44 6.13
117 118 3.664947 CGTAAATTGTGCGTTTTACCACC 59.335 43.478 0.00 0.00 35.74 4.61
119 120 3.298317 GCGTAAATTGTGCGTTTTACCA 58.702 40.909 0.00 0.00 37.69 3.25
120 121 2.657848 GGCGTAAATTGTGCGTTTTACC 59.342 45.455 0.00 0.00 37.69 2.85
121 122 3.557508 AGGCGTAAATTGTGCGTTTTAC 58.442 40.909 0.00 0.00 37.69 2.01
122 123 3.900388 AGGCGTAAATTGTGCGTTTTA 57.100 38.095 0.00 0.00 37.69 1.52
123 124 2.785713 AGGCGTAAATTGTGCGTTTT 57.214 40.000 0.00 0.00 37.69 2.43
124 125 2.411806 CGTAGGCGTAAATTGTGCGTTT 60.412 45.455 0.00 0.00 37.69 3.60
125 126 1.127213 CGTAGGCGTAAATTGTGCGTT 59.873 47.619 0.00 0.00 37.69 4.84
126 127 0.717224 CGTAGGCGTAAATTGTGCGT 59.283 50.000 0.00 0.00 37.69 5.24
149 150 9.730420 GAGCTGAAACAAAACTATAGTTCAAAA 57.270 29.630 18.28 1.34 37.25 2.44
150 151 8.067784 CGAGCTGAAACAAAACTATAGTTCAAA 58.932 33.333 18.28 0.86 37.25 2.69
151 152 7.307751 CCGAGCTGAAACAAAACTATAGTTCAA 60.308 37.037 18.28 0.00 37.25 2.69
155 156 4.392138 GCCGAGCTGAAACAAAACTATAGT 59.608 41.667 0.00 0.00 0.00 2.12
158 159 3.412386 AGCCGAGCTGAAACAAAACTAT 58.588 40.909 0.00 0.00 37.57 2.12
159 160 2.846193 AGCCGAGCTGAAACAAAACTA 58.154 42.857 0.00 0.00 37.57 2.24
160 161 1.680338 AGCCGAGCTGAAACAAAACT 58.320 45.000 0.00 0.00 37.57 2.66
161 162 2.806244 TCTAGCCGAGCTGAAACAAAAC 59.194 45.455 8.44 0.00 40.10 2.43
162 163 2.806244 GTCTAGCCGAGCTGAAACAAAA 59.194 45.455 8.44 0.00 40.10 2.44
165 166 0.246635 GGTCTAGCCGAGCTGAAACA 59.753 55.000 8.44 0.00 40.10 2.83
166 167 0.246635 TGGTCTAGCCGAGCTGAAAC 59.753 55.000 8.44 4.35 40.10 2.78
167 168 0.532573 CTGGTCTAGCCGAGCTGAAA 59.467 55.000 8.44 0.00 40.10 2.69
168 169 0.323451 TCTGGTCTAGCCGAGCTGAA 60.323 55.000 8.44 0.00 42.59 3.02
169 170 0.749818 CTCTGGTCTAGCCGAGCTGA 60.750 60.000 8.44 10.46 43.08 4.26
170 171 1.034838 ACTCTGGTCTAGCCGAGCTG 61.035 60.000 16.71 4.40 40.10 4.24
171 172 0.547075 TACTCTGGTCTAGCCGAGCT 59.453 55.000 16.71 3.87 43.41 4.09
172 173 1.611519 ATACTCTGGTCTAGCCGAGC 58.388 55.000 16.71 0.00 39.68 5.03
185 186 1.066573 GCGCATGGCCAGATATACTCT 60.067 52.381 13.05 0.00 34.80 3.24
187 188 3.540211 GCGCATGGCCAGATATACT 57.460 52.632 13.05 0.00 34.80 2.12
199 200 2.612219 CTTTTAAGGCCCGGCGCATG 62.612 60.000 10.83 0.00 40.31 4.06
203 204 3.184206 GACTTTTAAGGCCCGGCG 58.816 61.111 0.00 0.00 0.00 6.46
211 212 6.017440 TCGGTTTTCTGTCATGGACTTTTAAG 60.017 38.462 0.00 0.00 33.15 1.85
212 213 5.823570 TCGGTTTTCTGTCATGGACTTTTAA 59.176 36.000 0.00 0.00 33.15 1.52
213 214 5.369833 TCGGTTTTCTGTCATGGACTTTTA 58.630 37.500 0.00 0.00 33.15 1.52
215 216 3.815401 CTCGGTTTTCTGTCATGGACTTT 59.185 43.478 0.00 0.00 33.15 2.66
216 217 3.403038 CTCGGTTTTCTGTCATGGACTT 58.597 45.455 0.00 0.00 33.15 3.01
218 219 2.076863 CCTCGGTTTTCTGTCATGGAC 58.923 52.381 0.00 0.00 0.00 4.02
219 220 1.610624 GCCTCGGTTTTCTGTCATGGA 60.611 52.381 0.00 0.00 0.00 3.41
222 223 0.322546 GGGCCTCGGTTTTCTGTCAT 60.323 55.000 0.84 0.00 0.00 3.06
224 225 0.955919 CTGGGCCTCGGTTTTCTGTC 60.956 60.000 4.53 0.00 0.00 3.51
225 226 1.073199 CTGGGCCTCGGTTTTCTGT 59.927 57.895 4.53 0.00 0.00 3.41
226 227 0.955919 GTCTGGGCCTCGGTTTTCTG 60.956 60.000 4.53 0.00 0.00 3.02
227 228 1.375326 GTCTGGGCCTCGGTTTTCT 59.625 57.895 4.53 0.00 0.00 2.52
231 232 4.658786 AGGGTCTGGGCCTCGGTT 62.659 66.667 4.53 0.00 0.00 4.44
235 236 4.741239 TGGGAGGGTCTGGGCCTC 62.741 72.222 4.53 0.00 0.00 4.70
236 237 4.748798 CTGGGAGGGTCTGGGCCT 62.749 72.222 4.53 0.00 0.00 5.19
241 242 3.332393 TAGGGCCTGGGAGGGTCTG 62.332 68.421 18.53 0.00 35.37 3.51
242 243 2.958739 TAGGGCCTGGGAGGGTCT 60.959 66.667 18.53 0.00 35.37 3.85
243 244 2.768769 GTAGGGCCTGGGAGGGTC 60.769 72.222 18.53 0.00 35.37 4.46
244 245 4.433194 GGTAGGGCCTGGGAGGGT 62.433 72.222 18.53 0.00 35.37 4.34
245 246 3.739080 ATGGTAGGGCCTGGGAGGG 62.739 68.421 18.53 0.00 35.37 4.30
246 247 2.039405 ATGGTAGGGCCTGGGAGG 60.039 66.667 18.53 0.00 38.80 4.30
247 248 2.511452 CGATGGTAGGGCCTGGGAG 61.511 68.421 18.53 0.00 38.35 4.30
248 249 2.445845 CGATGGTAGGGCCTGGGA 60.446 66.667 18.53 0.00 38.35 4.37
250 251 3.560251 CCCGATGGTAGGGCCTGG 61.560 72.222 18.53 7.41 42.77 4.45
256 257 1.129058 AAAGTAGGCCCGATGGTAGG 58.871 55.000 0.00 0.00 0.00 3.18
258 259 2.189676 TGAAAAGTAGGCCCGATGGTA 58.810 47.619 0.00 0.00 0.00 3.25
259 260 0.988832 TGAAAAGTAGGCCCGATGGT 59.011 50.000 0.00 0.00 0.00 3.55
260 261 2.017049 CTTGAAAAGTAGGCCCGATGG 58.983 52.381 0.00 0.00 39.70 3.51
265 266 1.074889 TGGGTCTTGAAAAGTAGGCCC 59.925 52.381 0.00 4.84 46.34 5.80
266 267 2.557056 GTTGGGTCTTGAAAAGTAGGCC 59.443 50.000 0.00 0.00 46.34 5.19
267 268 2.557056 GGTTGGGTCTTGAAAAGTAGGC 59.443 50.000 0.00 0.00 46.34 3.93
268 269 3.154710 GGGTTGGGTCTTGAAAAGTAGG 58.845 50.000 0.00 0.00 46.34 3.18
269 270 2.812011 CGGGTTGGGTCTTGAAAAGTAG 59.188 50.000 0.00 0.00 46.34 2.57
270 271 2.438763 TCGGGTTGGGTCTTGAAAAGTA 59.561 45.455 0.00 0.00 46.34 2.24
271 272 1.213430 TCGGGTTGGGTCTTGAAAAGT 59.787 47.619 0.00 0.00 46.34 2.66
274 275 0.179012 GGTCGGGTTGGGTCTTGAAA 60.179 55.000 0.00 0.00 0.00 2.69
275 276 1.452801 GGTCGGGTTGGGTCTTGAA 59.547 57.895 0.00 0.00 0.00 2.69
276 277 2.522367 GGGTCGGGTTGGGTCTTGA 61.522 63.158 0.00 0.00 0.00 3.02
278 279 1.848886 GATGGGTCGGGTTGGGTCTT 61.849 60.000 0.00 0.00 0.00 3.01
279 280 2.204090 ATGGGTCGGGTTGGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
281 282 2.204090 AGATGGGTCGGGTTGGGT 60.204 61.111 0.00 0.00 0.00 4.51
282 283 2.272146 CAGATGGGTCGGGTTGGG 59.728 66.667 0.00 0.00 0.00 4.12
283 284 2.272146 CCAGATGGGTCGGGTTGG 59.728 66.667 0.00 0.00 35.28 3.77
293 294 3.085952 TCAGGGCTTTTTACCAGATGG 57.914 47.619 0.00 0.00 42.17 3.51
294 295 5.467035 TTTTCAGGGCTTTTTACCAGATG 57.533 39.130 0.00 0.00 0.00 2.90
296 297 3.320826 GCTTTTCAGGGCTTTTTACCAGA 59.679 43.478 0.00 0.00 0.00 3.86
298 299 2.367241 GGCTTTTCAGGGCTTTTTACCA 59.633 45.455 0.00 0.00 0.00 3.25
299 300 2.289444 GGGCTTTTCAGGGCTTTTTACC 60.289 50.000 0.00 0.00 0.00 2.85
300 301 2.632996 AGGGCTTTTCAGGGCTTTTTAC 59.367 45.455 0.00 0.00 0.00 2.01
301 302 2.970987 AGGGCTTTTCAGGGCTTTTTA 58.029 42.857 0.00 0.00 0.00 1.52
302 303 1.806496 AGGGCTTTTCAGGGCTTTTT 58.194 45.000 0.00 0.00 0.00 1.94
303 304 1.806496 AAGGGCTTTTCAGGGCTTTT 58.194 45.000 0.00 0.00 0.00 2.27
304 305 2.529632 CTAAGGGCTTTTCAGGGCTTT 58.470 47.619 0.00 0.00 33.62 3.51
306 307 0.332972 CCTAAGGGCTTTTCAGGGCT 59.667 55.000 0.00 0.00 0.00 5.19
307 308 0.684479 CCCTAAGGGCTTTTCAGGGC 60.684 60.000 4.44 0.00 39.62 5.19
308 309 3.596362 CCCTAAGGGCTTTTCAGGG 57.404 57.895 3.08 3.08 40.10 4.45
341 342 2.428530 GCATTTTAAGGAAGAGGCCCAG 59.571 50.000 0.00 0.00 0.00 4.45
343 344 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
345 346 3.677148 GCTTGGCATTTTAAGGAAGAGGC 60.677 47.826 0.00 0.00 0.00 4.70
346 347 3.118992 GGCTTGGCATTTTAAGGAAGAGG 60.119 47.826 0.00 0.00 0.00 3.69
347 348 3.118992 GGGCTTGGCATTTTAAGGAAGAG 60.119 47.826 0.00 0.00 0.00 2.85
348 349 2.831526 GGGCTTGGCATTTTAAGGAAGA 59.168 45.455 0.00 0.00 0.00 2.87
349 350 2.566724 TGGGCTTGGCATTTTAAGGAAG 59.433 45.455 0.00 0.00 0.00 3.46
351 352 2.317371 TGGGCTTGGCATTTTAAGGA 57.683 45.000 0.00 0.00 0.00 3.36
353 354 2.349590 GCTTGGGCTTGGCATTTTAAG 58.650 47.619 0.00 0.00 35.22 1.85
354 355 1.003003 GGCTTGGGCTTGGCATTTTAA 59.997 47.619 0.00 0.00 38.73 1.52
355 356 0.612744 GGCTTGGGCTTGGCATTTTA 59.387 50.000 0.00 0.00 38.73 1.52
356 357 1.376086 GGCTTGGGCTTGGCATTTT 59.624 52.632 0.00 0.00 38.73 1.82
357 358 2.595884 GGGCTTGGGCTTGGCATTT 61.596 57.895 0.00 0.00 38.73 2.32
358 359 3.004946 GGGCTTGGGCTTGGCATT 61.005 61.111 0.00 0.00 38.73 3.56
362 363 3.373565 GAACGGGCTTGGGCTTGG 61.374 66.667 0.00 0.00 38.73 3.61
363 364 2.597217 TGAACGGGCTTGGGCTTG 60.597 61.111 0.00 0.00 38.73 4.01
364 365 2.282462 CTGAACGGGCTTGGGCTT 60.282 61.111 0.00 0.00 38.73 4.35
365 366 4.351054 CCTGAACGGGCTTGGGCT 62.351 66.667 0.00 0.00 38.73 5.19
375 376 4.335647 ACCAGCAGGGCCTGAACG 62.336 66.667 37.07 22.76 42.05 3.95
376 377 2.674380 CACCAGCAGGGCCTGAAC 60.674 66.667 37.07 19.98 42.05 3.18
384 385 1.531365 TTTTGAGCCCACCAGCAGG 60.531 57.895 0.00 0.00 42.21 4.85
385 386 0.825010 AGTTTTGAGCCCACCAGCAG 60.825 55.000 0.00 0.00 34.23 4.24
386 387 0.823356 GAGTTTTGAGCCCACCAGCA 60.823 55.000 0.00 0.00 34.23 4.41
387 388 0.823356 TGAGTTTTGAGCCCACCAGC 60.823 55.000 0.00 0.00 0.00 4.85
389 390 0.178992 CCTGAGTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
390 391 1.527433 GCCTGAGTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
391 392 1.527433 GGCCTGAGTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
392 393 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
393 394 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
394 395 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
395 396 0.600057 CTTGGGCCTGAGTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
396 397 0.600057 GCTTGGGCCTGAGTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
397 398 2.732289 GCTTGGGCCTGAGTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
440 441 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
442 443 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
448 449 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
449 450 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
450 451 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
451 452 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
466 467 4.394712 CTGTCGGTCCACCCAGGC 62.395 72.222 0.00 0.00 37.29 4.85
467 468 3.706373 CCTGTCGGTCCACCCAGG 61.706 72.222 6.65 6.65 38.50 4.45
468 469 3.706373 CCCTGTCGGTCCACCCAG 61.706 72.222 0.00 0.00 0.00 4.45
475 476 4.083862 GTCCCAGCCCTGTCGGTC 62.084 72.222 0.00 0.00 0.00 4.79
478 479 3.649277 CTTCGTCCCAGCCCTGTCG 62.649 68.421 0.00 0.00 0.00 4.35
482 483 2.370445 CCATCTTCGTCCCAGCCCT 61.370 63.158 0.00 0.00 0.00 5.19
483 484 2.190578 CCATCTTCGTCCCAGCCC 59.809 66.667 0.00 0.00 0.00 5.19
484 485 2.514824 GCCATCTTCGTCCCAGCC 60.515 66.667 0.00 0.00 0.00 4.85
485 486 2.514824 GGCCATCTTCGTCCCAGC 60.515 66.667 0.00 0.00 0.00 4.85
486 487 1.153289 CTGGCCATCTTCGTCCCAG 60.153 63.158 5.51 0.00 37.35 4.45
488 489 0.744771 GTTCTGGCCATCTTCGTCCC 60.745 60.000 5.51 0.00 0.00 4.46
489 490 0.250513 AGTTCTGGCCATCTTCGTCC 59.749 55.000 5.51 0.00 0.00 4.79
490 491 2.961526 TAGTTCTGGCCATCTTCGTC 57.038 50.000 5.51 0.00 0.00 4.20
491 492 3.243907 GCTATAGTTCTGGCCATCTTCGT 60.244 47.826 5.51 0.00 0.00 3.85
492 493 3.006323 AGCTATAGTTCTGGCCATCTTCG 59.994 47.826 5.51 0.00 0.00 3.79
493 494 4.314121 CAGCTATAGTTCTGGCCATCTTC 58.686 47.826 5.51 0.00 0.00 2.87
494 495 3.072184 CCAGCTATAGTTCTGGCCATCTT 59.928 47.826 5.51 0.00 42.79 2.40
495 496 2.636893 CCAGCTATAGTTCTGGCCATCT 59.363 50.000 5.51 8.22 42.79 2.90
496 497 3.051081 CCAGCTATAGTTCTGGCCATC 57.949 52.381 5.51 0.00 42.79 3.51
502 503 3.567164 CCATTTGGCCAGCTATAGTTCTG 59.433 47.826 5.11 1.21 0.00 3.02
504 505 2.887152 CCCATTTGGCCAGCTATAGTTC 59.113 50.000 5.11 0.00 0.00 3.01
554 555 2.757099 GTCATGCCTGGCCCAAGG 60.757 66.667 17.53 1.50 40.63 3.61
556 557 1.683025 CATGTCATGCCTGGCCCAA 60.683 57.895 17.53 0.00 0.00 4.12
557 558 2.043752 CATGTCATGCCTGGCCCA 60.044 61.111 17.53 8.02 0.00 5.36
558 559 1.826921 CTCATGTCATGCCTGGCCC 60.827 63.158 17.53 1.94 0.00 5.80
559 560 2.487532 GCTCATGTCATGCCTGGCC 61.488 63.158 17.53 0.00 0.00 5.36
560 561 0.179037 TAGCTCATGTCATGCCTGGC 60.179 55.000 12.87 12.87 0.00 4.85
561 562 2.336945 TTAGCTCATGTCATGCCTGG 57.663 50.000 8.03 0.00 0.00 4.45
564 565 1.331756 CCGTTTAGCTCATGTCATGCC 59.668 52.381 8.03 1.94 0.00 4.40
565 566 1.331756 CCCGTTTAGCTCATGTCATGC 59.668 52.381 8.03 0.00 0.00 4.06
566 567 1.331756 GCCCGTTTAGCTCATGTCATG 59.668 52.381 6.47 6.47 0.00 3.07
567 568 1.668419 GCCCGTTTAGCTCATGTCAT 58.332 50.000 0.00 0.00 0.00 3.06
568 569 0.392461 GGCCCGTTTAGCTCATGTCA 60.392 55.000 0.00 0.00 0.00 3.58
569 570 1.429148 CGGCCCGTTTAGCTCATGTC 61.429 60.000 0.00 0.00 0.00 3.06
607 608 2.593978 CTCAGGCATGACCCAGGG 59.406 66.667 2.85 2.85 40.58 4.45
608 609 2.593978 CCTCAGGCATGACCCAGG 59.406 66.667 0.00 0.00 40.58 4.45
642 643 2.036006 TAATCGGGTTGTGCCGTGC 61.036 57.895 0.00 0.00 38.44 5.34
643 644 1.791662 GTAATCGGGTTGTGCCGTG 59.208 57.895 0.00 0.00 38.44 4.94
644 645 1.738830 CGTAATCGGGTTGTGCCGT 60.739 57.895 0.00 0.00 38.44 5.68
645 646 1.293267 AACGTAATCGGGTTGTGCCG 61.293 55.000 0.00 0.00 41.85 5.69
646 647 0.876399 AAACGTAATCGGGTTGTGCC 59.124 50.000 0.00 0.00 41.85 5.01
686 687 7.777910 GCCTATATTTACATGTTGGGCCATATA 59.222 37.037 7.26 2.24 0.00 0.86
691 692 4.407365 AGCCTATATTTACATGTTGGGCC 58.593 43.478 15.83 0.00 37.98 5.80
692 693 7.519032 TTTAGCCTATATTTACATGTTGGGC 57.481 36.000 12.57 12.57 37.57 5.36
693 694 9.744468 GTTTTTAGCCTATATTTACATGTTGGG 57.256 33.333 2.30 0.00 0.00 4.12
694 695 9.445786 CGTTTTTAGCCTATATTTACATGTTGG 57.554 33.333 2.30 0.00 0.00 3.77
695 696 8.953990 GCGTTTTTAGCCTATATTTACATGTTG 58.046 33.333 2.30 0.00 0.00 3.33
696 697 8.899771 AGCGTTTTTAGCCTATATTTACATGTT 58.100 29.630 2.30 0.00 34.64 2.71
697 698 8.446599 AGCGTTTTTAGCCTATATTTACATGT 57.553 30.769 2.69 2.69 34.64 3.21
698 699 8.556194 TGAGCGTTTTTAGCCTATATTTACATG 58.444 33.333 0.00 0.00 34.64 3.21
699 700 8.671384 TGAGCGTTTTTAGCCTATATTTACAT 57.329 30.769 0.00 0.00 34.64 2.29
701 702 8.062448 CACTGAGCGTTTTTAGCCTATATTTAC 58.938 37.037 0.00 0.00 34.64 2.01
702 703 7.254658 GCACTGAGCGTTTTTAGCCTATATTTA 60.255 37.037 0.00 0.00 34.64 1.40
703 704 6.458342 GCACTGAGCGTTTTTAGCCTATATTT 60.458 38.462 0.00 0.00 34.64 1.40
704 705 5.007724 GCACTGAGCGTTTTTAGCCTATATT 59.992 40.000 0.00 0.00 34.64 1.28
705 706 4.511826 GCACTGAGCGTTTTTAGCCTATAT 59.488 41.667 0.00 0.00 34.64 0.86
707 708 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
720 721 2.159653 CCTGTTATTTGACGCACTGAGC 60.160 50.000 0.00 0.00 40.87 4.26
722 723 1.804151 GCCTGTTATTTGACGCACTGA 59.196 47.619 0.00 0.00 0.00 3.41
725 726 1.804151 TCAGCCTGTTATTTGACGCAC 59.196 47.619 0.00 0.00 0.00 5.34
726 727 2.177394 TCAGCCTGTTATTTGACGCA 57.823 45.000 0.00 0.00 0.00 5.24
727 728 3.552604 TTTCAGCCTGTTATTTGACGC 57.447 42.857 0.00 0.00 0.00 5.19
728 729 6.197096 GCATATTTTCAGCCTGTTATTTGACG 59.803 38.462 0.00 0.00 0.00 4.35
729 730 7.035004 TGCATATTTTCAGCCTGTTATTTGAC 58.965 34.615 0.00 0.00 0.00 3.18
730 731 7.167924 TGCATATTTTCAGCCTGTTATTTGA 57.832 32.000 0.00 0.00 0.00 2.69
732 733 6.576185 CCTGCATATTTTCAGCCTGTTATTT 58.424 36.000 0.00 0.00 0.00 1.40
733 734 5.452356 GCCTGCATATTTTCAGCCTGTTATT 60.452 40.000 0.00 0.00 0.00 1.40
734 735 4.038402 GCCTGCATATTTTCAGCCTGTTAT 59.962 41.667 0.00 0.00 0.00 1.89
736 737 2.167075 GCCTGCATATTTTCAGCCTGTT 59.833 45.455 0.00 0.00 0.00 3.16
737 738 1.753073 GCCTGCATATTTTCAGCCTGT 59.247 47.619 0.00 0.00 0.00 4.00
738 739 1.068127 GGCCTGCATATTTTCAGCCTG 59.932 52.381 0.00 0.00 0.00 4.85
740 741 1.113788 TGGCCTGCATATTTTCAGCC 58.886 50.000 3.32 0.00 0.00 4.85
741 742 1.202452 GGTGGCCTGCATATTTTCAGC 60.202 52.381 3.32 0.00 0.00 4.26
742 743 2.101783 TGGTGGCCTGCATATTTTCAG 58.898 47.619 3.32 0.00 0.00 3.02
743 744 2.228545 TGGTGGCCTGCATATTTTCA 57.771 45.000 3.32 0.00 0.00 2.69
744 745 2.804212 GCATGGTGGCCTGCATATTTTC 60.804 50.000 9.69 0.00 38.28 2.29
746 747 0.754472 GCATGGTGGCCTGCATATTT 59.246 50.000 9.69 0.00 38.28 1.40
747 748 0.105862 AGCATGGTGGCCTGCATATT 60.106 50.000 16.24 0.00 40.88 1.28
748 749 0.773014 TAGCATGGTGGCCTGCATAT 59.227 50.000 16.24 0.00 40.88 1.78
750 751 0.324552 TTTAGCATGGTGGCCTGCAT 60.325 50.000 16.24 5.03 40.88 3.96
751 752 1.076370 TTTAGCATGGTGGCCTGCA 59.924 52.632 16.24 0.90 40.88 4.41
752 753 1.512694 GTTTAGCATGGTGGCCTGC 59.487 57.895 7.89 5.23 38.69 4.85
755 756 1.506262 CACGTTTAGCATGGTGGCC 59.494 57.895 7.89 0.00 0.00 5.36
756 757 1.154035 GCACGTTTAGCATGGTGGC 60.154 57.895 7.89 0.00 0.00 5.01
757 758 1.506262 GGCACGTTTAGCATGGTGG 59.494 57.895 7.89 0.00 0.00 4.61
772 773 3.345414 ACCAATAAATAAACGGTCGGCA 58.655 40.909 0.00 0.00 0.00 5.69
773 774 3.943958 GACCAATAAATAAACGGTCGGC 58.056 45.455 0.00 0.00 37.04 5.54
776 777 5.067283 AGGCATGACCAATAAATAAACGGTC 59.933 40.000 0.00 0.00 45.24 4.79
777 778 4.953579 AGGCATGACCAATAAATAAACGGT 59.046 37.500 0.00 0.00 43.14 4.83
778 779 5.280945 CAGGCATGACCAATAAATAAACGG 58.719 41.667 0.00 0.00 43.14 4.44
779 780 5.280945 CCAGGCATGACCAATAAATAAACG 58.719 41.667 0.00 0.00 43.14 3.60
783 784 3.230134 GCCCAGGCATGACCAATAAATA 58.770 45.455 0.00 0.00 43.14 1.40
785 786 1.484038 GCCCAGGCATGACCAATAAA 58.516 50.000 0.00 0.00 43.14 1.40
786 787 0.396974 GGCCCAGGCATGACCAATAA 60.397 55.000 11.50 0.00 43.14 1.40
787 788 1.229927 GGCCCAGGCATGACCAATA 59.770 57.895 11.50 0.00 43.14 1.90
789 790 3.267233 AGGCCCAGGCATGACCAA 61.267 61.111 11.50 0.00 43.14 3.67
833 834 2.288030 ACGATTACTATACGGGCTGTGC 60.288 50.000 9.79 0.00 0.00 4.57
834 835 3.305964 CACGATTACTATACGGGCTGTG 58.694 50.000 9.79 0.00 0.00 3.66
835 836 3.637998 CACGATTACTATACGGGCTGT 57.362 47.619 3.57 3.57 0.00 4.40
839 840 1.891150 AGGGCACGATTACTATACGGG 59.109 52.381 0.00 0.00 0.00 5.28
840 841 2.352421 CCAGGGCACGATTACTATACGG 60.352 54.545 0.00 0.00 0.00 4.02
842 843 2.685100 GCCAGGGCACGATTACTATAC 58.315 52.381 5.20 0.00 41.49 1.47
843 844 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
871 872 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
872 873 2.895372 GTAATCGTGCCTGGCCCG 60.895 66.667 17.67 17.67 0.00 6.13
873 874 2.660258 ATCGTAATCGTGCCTGGCCC 62.660 60.000 17.53 2.94 38.33 5.80
874 875 1.227556 ATCGTAATCGTGCCTGGCC 60.228 57.895 17.53 6.66 38.33 5.36
875 876 1.498865 CCATCGTAATCGTGCCTGGC 61.499 60.000 12.87 12.87 38.33 4.85
876 877 0.880278 CCCATCGTAATCGTGCCTGG 60.880 60.000 0.00 0.00 38.33 4.45
878 879 1.227556 GCCCATCGTAATCGTGCCT 60.228 57.895 0.00 0.00 38.33 4.75
879 880 2.251642 GGCCCATCGTAATCGTGCC 61.252 63.158 0.00 0.00 38.33 5.01
880 881 2.594962 CGGCCCATCGTAATCGTGC 61.595 63.158 0.00 0.00 38.33 5.34
881 882 1.954146 CCGGCCCATCGTAATCGTG 60.954 63.158 0.00 0.00 38.33 4.35
882 883 2.420043 CCGGCCCATCGTAATCGT 59.580 61.111 0.00 0.00 38.33 3.73
883 884 2.357034 CCCGGCCCATCGTAATCG 60.357 66.667 0.00 0.00 38.55 3.34
885 886 4.265056 GGCCCGGCCCATCGTAAT 62.265 66.667 18.83 0.00 44.06 1.89
920 921 1.078426 CTAGTCCTGGCCAAACGGG 60.078 63.158 7.01 4.27 38.29 5.28
921 922 0.391263 GTCTAGTCCTGGCCAAACGG 60.391 60.000 7.01 4.72 0.00 4.44
922 923 0.391263 GGTCTAGTCCTGGCCAAACG 60.391 60.000 7.01 0.00 0.00 3.60
923 924 0.690762 TGGTCTAGTCCTGGCCAAAC 59.309 55.000 7.01 8.50 0.00 2.93
924 925 0.984230 CTGGTCTAGTCCTGGCCAAA 59.016 55.000 7.01 0.00 0.00 3.28
925 926 0.116342 TCTGGTCTAGTCCTGGCCAA 59.884 55.000 7.01 0.00 0.00 4.52
927 928 0.033011 TCTCTGGTCTAGTCCTGGCC 60.033 60.000 11.83 0.00 0.00 5.36
928 929 1.064314 TCTCTCTGGTCTAGTCCTGGC 60.064 57.143 11.83 0.00 0.00 4.85
929 930 2.650322 GTCTCTCTGGTCTAGTCCTGG 58.350 57.143 11.83 3.85 0.00 4.45
930 931 2.650322 GGTCTCTCTGGTCTAGTCCTG 58.350 57.143 7.56 7.04 0.00 3.86
931 932 1.210967 CGGTCTCTCTGGTCTAGTCCT 59.789 57.143 7.56 0.00 0.00 3.85
932 933 1.670791 CGGTCTCTCTGGTCTAGTCC 58.329 60.000 0.00 0.00 0.00 3.85
934 935 0.394625 GCCGGTCTCTCTGGTCTAGT 60.395 60.000 1.90 0.00 44.16 2.57
1068 1071 4.180946 CGCGTGGGAGAGGAGACG 62.181 72.222 0.00 0.00 34.93 4.18
1069 1072 4.500116 GCGCGTGGGAGAGGAGAC 62.500 72.222 8.43 0.00 0.00 3.36
1138 1141 3.370978 CGTGTTCTGGGTGATGTATGTTC 59.629 47.826 0.00 0.00 0.00 3.18
1144 1147 1.338107 TCTCGTGTTCTGGGTGATGT 58.662 50.000 0.00 0.00 0.00 3.06
1504 1523 2.638480 ACACAGGCAGAAGCACTAAA 57.362 45.000 0.00 0.00 44.61 1.85
1517 1536 2.224209 ACCGAGGTTCAGTTAACACAGG 60.224 50.000 8.61 5.19 40.08 4.00
1547 1566 1.002624 ACCCACATGCCGTAACCTG 60.003 57.895 0.00 0.00 0.00 4.00
1555 1574 1.978617 CACTTCCCACCCACATGCC 60.979 63.158 0.00 0.00 0.00 4.40
1596 1621 4.051922 CACTCGAATCTATAGGCCAACAC 58.948 47.826 5.01 0.00 0.00 3.32
1613 1638 0.946221 GAACCCAGCACTGTCACTCG 60.946 60.000 0.00 0.00 0.00 4.18
1639 1712 6.834959 ATTAACATAGTCACAGAAGCATCG 57.165 37.500 0.00 0.00 0.00 3.84
1679 1760 3.306088 GCTGTACTCCTACTTGTGAAGCA 60.306 47.826 0.00 0.00 0.00 3.91
1680 1761 3.254892 GCTGTACTCCTACTTGTGAAGC 58.745 50.000 0.00 0.00 0.00 3.86
1681 1762 4.489810 CTGCTGTACTCCTACTTGTGAAG 58.510 47.826 0.00 0.00 0.00 3.02
1682 1763 3.306088 GCTGCTGTACTCCTACTTGTGAA 60.306 47.826 0.00 0.00 0.00 3.18
1683 1764 2.231478 GCTGCTGTACTCCTACTTGTGA 59.769 50.000 0.00 0.00 0.00 3.58
1816 1897 5.006165 CCTCTCTGTCTAATCATGTTTTCGC 59.994 44.000 0.00 0.00 0.00 4.70
1818 1899 8.470805 TCTACCTCTCTGTCTAATCATGTTTTC 58.529 37.037 0.00 0.00 0.00 2.29
1831 1912 2.622942 CCTGCAGATCTACCTCTCTGTC 59.377 54.545 17.39 0.00 40.80 3.51
1877 1958 3.817084 GGATAACATAACGTAAAGGGGCC 59.183 47.826 0.00 0.00 0.00 5.80
1915 1996 5.121105 TGGAATTGATCTACGAGACTACGA 58.879 41.667 0.00 0.00 37.03 3.43
1916 1997 5.419760 TGGAATTGATCTACGAGACTACG 57.580 43.478 0.00 0.00 39.31 3.51
1917 1998 6.561614 TGTTGGAATTGATCTACGAGACTAC 58.438 40.000 0.00 0.00 0.00 2.73
1918 1999 6.769134 TGTTGGAATTGATCTACGAGACTA 57.231 37.500 0.00 0.00 0.00 2.59
1919 2000 5.661056 TGTTGGAATTGATCTACGAGACT 57.339 39.130 0.00 0.00 0.00 3.24
1920 2001 6.018669 GGAATGTTGGAATTGATCTACGAGAC 60.019 42.308 0.00 0.00 0.00 3.36
1921 2002 6.049149 GGAATGTTGGAATTGATCTACGAGA 58.951 40.000 0.00 0.00 0.00 4.04
1922 2003 5.237344 GGGAATGTTGGAATTGATCTACGAG 59.763 44.000 0.00 0.00 0.00 4.18
1923 2004 5.123227 GGGAATGTTGGAATTGATCTACGA 58.877 41.667 0.00 0.00 0.00 3.43
2032 2132 7.368833 ACAGGATGCGTACTATAAGTATTGAC 58.631 38.462 0.00 0.00 42.53 3.18
2425 2715 8.405418 TGCTTACGTATAGAAGGTCTGATAAT 57.595 34.615 0.00 0.00 0.00 1.28
2554 2845 5.178623 GCGATTCACCGATTTATCCATACAA 59.821 40.000 0.00 0.00 0.00 2.41
2555 2846 4.688879 GCGATTCACCGATTTATCCATACA 59.311 41.667 0.00 0.00 0.00 2.29
2725 3016 2.260844 TCTGTTGTGCTCTCCTTTGG 57.739 50.000 0.00 0.00 0.00 3.28
2726 3017 2.031333 GCTTCTGTTGTGCTCTCCTTTG 60.031 50.000 0.00 0.00 0.00 2.77
2744 3035 2.368439 TCTGCACTTGTGTTCTTGCTT 58.632 42.857 2.61 0.00 35.91 3.91
2978 3269 1.869767 GCCAGTTAATCAGCATCTCGG 59.130 52.381 0.00 0.00 0.00 4.63
2979 3270 1.869767 GGCCAGTTAATCAGCATCTCG 59.130 52.381 0.00 0.00 0.00 4.04
2980 3271 1.869767 CGGCCAGTTAATCAGCATCTC 59.130 52.381 2.24 0.00 0.00 2.75
2981 3272 1.486310 TCGGCCAGTTAATCAGCATCT 59.514 47.619 2.24 0.00 0.00 2.90
2982 3273 1.953559 TCGGCCAGTTAATCAGCATC 58.046 50.000 2.24 0.00 0.00 3.91
2983 3274 2.645838 ATCGGCCAGTTAATCAGCAT 57.354 45.000 2.24 0.00 0.00 3.79
2984 3275 3.769739 ATATCGGCCAGTTAATCAGCA 57.230 42.857 2.24 0.00 0.00 4.41
2985 3276 4.320494 CCAAATATCGGCCAGTTAATCAGC 60.320 45.833 2.24 0.00 0.00 4.26
2988 3279 5.298276 TGTTCCAAATATCGGCCAGTTAATC 59.702 40.000 2.24 0.00 0.00 1.75
3411 3723 4.576879 AGGGGACGTCAAAAGATTCTAAC 58.423 43.478 18.91 0.00 0.00 2.34
3412 3724 4.903045 AGGGGACGTCAAAAGATTCTAA 57.097 40.909 18.91 0.00 0.00 2.10
3413 3725 4.903045 AAGGGGACGTCAAAAGATTCTA 57.097 40.909 18.91 0.00 0.00 2.10
3414 3726 3.790089 AAGGGGACGTCAAAAGATTCT 57.210 42.857 18.91 0.00 0.00 2.40
3415 3727 3.057526 CCAAAGGGGACGTCAAAAGATTC 60.058 47.826 18.91 0.00 40.01 2.52
3416 3728 2.890945 CCAAAGGGGACGTCAAAAGATT 59.109 45.455 18.91 1.41 40.01 2.40
3417 3729 2.158519 ACCAAAGGGGACGTCAAAAGAT 60.159 45.455 18.91 0.00 41.15 2.40
3418 3730 1.213430 ACCAAAGGGGACGTCAAAAGA 59.787 47.619 18.91 0.00 41.15 2.52
3584 3912 5.843421 ACATCTGGTCTCATATAAGGAAGCT 59.157 40.000 0.00 0.00 0.00 3.74
3765 4111 8.114201 TCAGCATGATGAGGTTTCTCAATCTAC 61.114 40.741 10.16 0.00 43.34 2.59
3810 4156 1.115467 CCTCGGTACAATGAGGAGCT 58.885 55.000 18.35 0.00 0.00 4.09
3822 4168 1.100510 CTTCACGTGGATCCTCGGTA 58.899 55.000 32.76 20.70 37.27 4.02
3836 4182 7.093858 ACACCTACTAGTGATCCTAAACTTCAC 60.094 40.741 5.39 0.00 40.34 3.18
3838 4184 7.339976 AGACACCTACTAGTGATCCTAAACTTC 59.660 40.741 5.39 0.00 40.34 3.01
3840 4186 6.733509 AGACACCTACTAGTGATCCTAAACT 58.266 40.000 5.39 0.00 40.34 2.66
4017 4364 4.595988 CCTAGAGGAAAGGGTTGCCCAC 62.596 59.091 6.99 0.00 41.67 4.61
4037 4396 5.659440 TGATTTTTCAATGGGTAAGCTCC 57.341 39.130 0.00 0.00 0.00 4.70
4049 4408 9.323985 CCCAAAGACAATTAGTTGATTTTTCAA 57.676 29.630 4.81 0.00 38.71 2.69
4160 4528 4.633126 CACACCTTATGAGATGTGGACAAG 59.367 45.833 4.00 0.00 39.01 3.16
4161 4529 4.578871 CACACCTTATGAGATGTGGACAA 58.421 43.478 4.00 0.00 39.01 3.18
4281 4657 4.065088 CCTTATGGATATGGTGTGAACCG 58.935 47.826 0.00 0.00 34.57 4.44
4454 4840 8.589335 TTTAGGATAGCGTGATAGAATTGTTC 57.411 34.615 0.00 0.00 0.00 3.18
4541 4929 4.695217 TTCTTCGAAATTATGGCACCAC 57.305 40.909 0.00 0.00 0.00 4.16
4641 5744 4.260907 CGGTGTCAGATGAGGCAAATTATG 60.261 45.833 0.00 0.00 0.00 1.90
4666 5769 4.793071 TCAGTGTGATAAAAATGTTGGCG 58.207 39.130 0.00 0.00 0.00 5.69
4722 5867 2.539547 GCGTGGATGTTGACATGTATGC 60.540 50.000 0.00 3.97 36.57 3.14
4734 5879 3.791973 TTTTGTTTCTTGCGTGGATGT 57.208 38.095 0.00 0.00 0.00 3.06
4886 6034 5.328691 CGAAATTATAACTCAAGCGGCAAA 58.671 37.500 1.45 0.00 0.00 3.68
5060 6211 4.096984 CCAGAACATGTTAAGAGGGATTGC 59.903 45.833 11.95 0.00 0.00 3.56
5163 6318 4.261801 GGATGTAAAGAGCCAAGTTGCTA 58.738 43.478 0.00 0.00 42.95 3.49
5369 6772 6.168164 CAAAAGATGCAAAGTCTCTCTCTC 57.832 41.667 0.00 0.00 0.00 3.20
5514 6920 2.554142 TGCAGCTGAATCAATCTACCG 58.446 47.619 20.43 0.00 0.00 4.02
5548 6954 8.607713 TCATAACAAATCCCTACAAGGAGTTAA 58.392 33.333 0.00 0.00 42.10 2.01
5567 6973 7.281324 CCGTGAGTTATAATTTGGGTCATAACA 59.719 37.037 8.50 0.00 36.67 2.41
5643 7049 3.106054 AGCTCCAATGTGAGAGATCTGT 58.894 45.455 0.00 0.00 34.11 3.41
5712 8191 8.907222 AACGGAAACTAAATTCCTACTTTACA 57.093 30.769 4.71 0.00 45.54 2.41
5822 8301 6.920817 TGTATAATTTGTCTCGTCTGACACT 58.079 36.000 8.73 1.27 45.32 3.55
5850 8329 6.130298 TGCATACCAAATCGTTAAGGAATG 57.870 37.500 1.37 4.90 0.00 2.67
5865 8344 5.508320 GCATTCATCATTCACATGCATACCA 60.508 40.000 0.00 0.00 40.06 3.25
5866 8345 4.921515 GCATTCATCATTCACATGCATACC 59.078 41.667 0.00 0.00 40.06 2.73
5867 8346 5.525199 TGCATTCATCATTCACATGCATAC 58.475 37.500 0.00 0.00 44.07 2.39
6083 8564 5.322310 CCTAACGATCCTATCACGTAATCG 58.678 45.833 0.00 0.00 43.53 3.34
6085 8566 5.056894 GCCTAACGATCCTATCACGTAAT 57.943 43.478 0.00 0.00 39.31 1.89
6086 8567 4.494350 GCCTAACGATCCTATCACGTAA 57.506 45.455 0.00 0.00 39.31 3.18
6105 8586 5.449107 TTAGGTGATCTAATGTCTACGCC 57.551 43.478 0.00 0.00 33.34 5.68
6263 8745 9.418045 TGACTGCCAAAATAAGCTTTTAATTAC 57.582 29.630 3.20 0.00 0.00 1.89
6282 8764 1.141657 TCAGGCTTATGGATGACTGCC 59.858 52.381 0.00 0.00 40.54 4.85
6287 8769 5.649395 CAGTTCTTTTCAGGCTTATGGATGA 59.351 40.000 0.00 0.00 0.00 2.92
6399 8881 2.425569 GGTACCCGCCACCGACATA 61.426 63.158 0.00 0.00 36.29 2.29
6507 8989 1.684248 GCTGCTCCCCACATCTCAAAT 60.684 52.381 0.00 0.00 0.00 2.32
6512 8994 1.203441 TTCTGCTGCTCCCCACATCT 61.203 55.000 0.00 0.00 0.00 2.90
6571 9061 2.450886 AGGGCCATATAAAAAGAGGGGG 59.549 50.000 6.18 0.00 0.00 5.40
6572 9062 3.500343 CAGGGCCATATAAAAAGAGGGG 58.500 50.000 6.18 0.00 0.00 4.79
6573 9063 3.500343 CCAGGGCCATATAAAAAGAGGG 58.500 50.000 6.18 0.00 0.00 4.30
6574 9064 2.893489 GCCAGGGCCATATAAAAAGAGG 59.107 50.000 6.18 0.00 34.56 3.69
6615 9105 2.751688 GGGCGTCCCTAACCAACA 59.248 61.111 0.00 0.00 41.34 3.33
6640 9130 2.632544 GCCCCAAACTAACGCACCC 61.633 63.158 0.00 0.00 0.00 4.61
6643 9133 1.669760 CTCGCCCCAAACTAACGCA 60.670 57.895 0.00 0.00 0.00 5.24
6717 9208 0.249911 AATTGATCTACGGCCCGCTC 60.250 55.000 1.23 0.00 0.00 5.03
6720 9211 0.105964 TGGAATTGATCTACGGCCCG 59.894 55.000 0.00 0.00 0.00 6.13
6827 9322 9.515226 AACTGCAGTAGGAAAATAAATAAGACA 57.485 29.630 22.01 0.00 0.00 3.41
6837 9332 3.891366 ACAAGCAACTGCAGTAGGAAAAT 59.109 39.130 22.01 0.00 45.16 1.82
6841 9337 2.638480 AACAAGCAACTGCAGTAGGA 57.362 45.000 22.01 0.00 45.16 2.94
6848 9344 4.388469 TGACAAAGAAAAACAAGCAACTGC 59.612 37.500 0.00 0.00 42.49 4.40
6929 9433 8.720562 TGTCAATAATAGTCAATGACACAAGTG 58.279 33.333 16.38 7.50 43.79 3.16
6930 9434 8.846943 TGTCAATAATAGTCAATGACACAAGT 57.153 30.769 16.38 2.67 43.79 3.16
6935 9439 7.607607 AGCACTTGTCAATAATAGTCAATGACA 59.392 33.333 16.38 3.01 46.12 3.58
6936 9440 7.978982 AGCACTTGTCAATAATAGTCAATGAC 58.021 34.615 5.02 5.02 40.53 3.06
7580 10095 4.988540 TCAAGTTCAATACAGACCTTGTCG 59.011 41.667 0.00 0.00 38.64 4.35
7734 10249 1.985473 AAAGCACAGACTTGCCATCA 58.015 45.000 6.15 0.00 44.14 3.07
7844 10359 2.068519 TGTGCACTTTACAGCTCGATG 58.931 47.619 19.41 0.00 0.00 3.84
8067 10582 4.023193 CAGGTCAACATGTTGGGTAAGTTC 60.023 45.833 32.54 15.71 40.78 3.01
8077 10752 6.010219 AGGCTTAATTACAGGTCAACATGTT 58.990 36.000 4.92 4.92 41.46 2.71
8214 10890 7.886629 AATGCCTCTCTAATGCTGATAAAAA 57.113 32.000 0.00 0.00 0.00 1.94
8251 10927 3.435671 ACTTGGCGTGAAAGCAGTATAAC 59.564 43.478 0.00 0.00 39.27 1.89
8321 10999 3.765511 CCAGAATTGAGAATGGGAAGCAA 59.234 43.478 0.00 0.00 0.00 3.91
8450 11129 2.490509 CAGATCCTGCAACATCAAAGCA 59.509 45.455 7.19 0.00 36.72 3.91
8453 11132 2.821378 CACCAGATCCTGCAACATCAAA 59.179 45.455 7.19 0.00 0.00 2.69
8549 11228 6.474819 AAAAACTAAGCCAACAAAACACAC 57.525 33.333 0.00 0.00 0.00 3.82
8760 11442 6.998074 TGTCAAGGAAAGAACATGATACAAGT 59.002 34.615 0.00 0.00 0.00 3.16
8921 11609 4.058124 CGATGACAGAACCACAAGAGAAA 58.942 43.478 0.00 0.00 0.00 2.52
8936 11624 3.441163 GGCGACTTTATGTACGATGACA 58.559 45.455 0.00 0.00 0.00 3.58
8961 11649 4.971924 ACTAGGATAGCACAGGGAAGAATT 59.028 41.667 0.00 0.00 44.39 2.17
9062 11752 4.568760 GCGATATAAGAAGGCCAGCTTATC 59.431 45.833 24.79 16.64 38.10 1.75
9126 11817 2.766263 AGAGAACGTTATGCCCTCATCA 59.234 45.455 14.24 0.00 34.22 3.07
9156 11847 8.156820 CAGGTTCCCACATAATGATAATCTACA 58.843 37.037 0.00 0.00 0.00 2.74
9157 11848 8.375506 TCAGGTTCCCACATAATGATAATCTAC 58.624 37.037 0.00 0.00 0.00 2.59
9158 11849 8.504811 TCAGGTTCCCACATAATGATAATCTA 57.495 34.615 0.00 0.00 0.00 1.98
9161 11852 7.018952 AGGATCAGGTTCCCACATAATGATAAT 59.981 37.037 0.00 0.00 36.35 1.28
9162 11853 6.332635 AGGATCAGGTTCCCACATAATGATAA 59.667 38.462 0.00 0.00 36.35 1.75
9163 11854 5.851693 AGGATCAGGTTCCCACATAATGATA 59.148 40.000 0.00 0.00 36.35 2.15
9164 11855 4.666907 AGGATCAGGTTCCCACATAATGAT 59.333 41.667 0.00 0.00 36.35 2.45
9190 11881 7.499321 TTTTCTAAGAATAACAAGGCGACAA 57.501 32.000 0.00 0.00 0.00 3.18
9195 11899 5.123344 TCGGCTTTTCTAAGAATAACAAGGC 59.877 40.000 0.00 0.00 32.92 4.35
9219 11923 3.611766 AGCTAGCAGTGGTTAATTCGT 57.388 42.857 18.83 0.00 0.00 3.85
9220 11924 4.946784 AAAGCTAGCAGTGGTTAATTCG 57.053 40.909 18.83 0.00 0.00 3.34
9249 11956 6.017192 GCAGTGGTTTAAATCATTGGCTTTTT 60.017 34.615 21.33 0.00 28.56 1.94
9256 11963 6.017400 AGTCAGCAGTGGTTTAAATCATTG 57.983 37.500 17.18 17.18 30.75 2.82
9316 12023 5.816821 ATGTGACACATGTGGTAAGCAACC 61.817 45.833 28.64 8.93 42.35 3.77
9317 12024 2.616376 TGTGACACATGTGGTAAGCAAC 59.384 45.455 28.64 15.24 34.19 4.17
9318 12025 2.924421 TGTGACACATGTGGTAAGCAA 58.076 42.857 28.64 5.83 34.19 3.91
9319 12026 2.629336 TGTGACACATGTGGTAAGCA 57.371 45.000 28.64 16.41 34.19 3.91
9329 12036 1.881973 GTCAGCAACCATGTGACACAT 59.118 47.619 15.48 15.48 39.91 3.21
9330 12037 1.134128 AGTCAGCAACCATGTGACACA 60.134 47.619 11.41 11.41 38.72 3.72
9331 12038 1.265095 CAGTCAGCAACCATGTGACAC 59.735 52.381 13.89 0.00 38.72 3.67
9332 12039 1.134128 ACAGTCAGCAACCATGTGACA 60.134 47.619 13.89 0.00 38.72 3.58
9333 12040 1.597742 ACAGTCAGCAACCATGTGAC 58.402 50.000 5.49 5.49 37.61 3.67
9334 12041 3.483808 TTACAGTCAGCAACCATGTGA 57.516 42.857 0.00 0.00 0.00 3.58
9335 12042 4.036734 AGTTTTACAGTCAGCAACCATGTG 59.963 41.667 0.00 0.00 0.00 3.21
9336 12043 4.207165 AGTTTTACAGTCAGCAACCATGT 58.793 39.130 0.00 0.00 0.00 3.21
9337 12044 4.836125 AGTTTTACAGTCAGCAACCATG 57.164 40.909 0.00 0.00 0.00 3.66
9338 12045 5.852282 AAAGTTTTACAGTCAGCAACCAT 57.148 34.783 0.00 0.00 0.00 3.55
9339 12046 5.184096 TCAAAAGTTTTACAGTCAGCAACCA 59.816 36.000 0.00 0.00 0.00 3.67
9340 12047 5.646606 TCAAAAGTTTTACAGTCAGCAACC 58.353 37.500 0.00 0.00 0.00 3.77
9341 12048 7.540745 TCTTTCAAAAGTTTTACAGTCAGCAAC 59.459 33.333 0.00 0.00 37.31 4.17
9342 12049 7.598278 TCTTTCAAAAGTTTTACAGTCAGCAA 58.402 30.769 0.00 0.00 37.31 3.91
9343 12050 7.151999 TCTTTCAAAAGTTTTACAGTCAGCA 57.848 32.000 0.00 0.00 37.31 4.41
9344 12051 9.899226 ATATCTTTCAAAAGTTTTACAGTCAGC 57.101 29.630 0.00 0.00 37.31 4.26
9491 12213 7.500227 TGAAATGAGGTGGATGTAAGATGAATC 59.500 37.037 0.00 0.00 0.00 2.52
9528 12250 4.592942 TGCTAAGGAAAATCATCAGTGCT 58.407 39.130 0.00 0.00 0.00 4.40
9544 12267 7.152645 TGGTAGTTCTTCAACTTACTGCTAAG 58.847 38.462 0.00 0.00 40.16 2.18
9555 12278 6.093633 GTGTAATCCCATGGTAGTTCTTCAAC 59.906 42.308 11.73 0.00 0.00 3.18
9575 12298 6.106673 GCATTAGAGAAGTTAGCAGGTGTAA 58.893 40.000 0.00 0.00 0.00 2.41
9607 12330 4.037089 GCCCTTTCGTTTGGTCTTTTCTTA 59.963 41.667 0.00 0.00 0.00 2.10
9613 12336 1.318576 CTGCCCTTTCGTTTGGTCTT 58.681 50.000 0.00 0.00 0.00 3.01
9694 12417 5.380043 CTCCCAGTAATAATGATGCAAGGT 58.620 41.667 0.00 0.00 0.00 3.50
9727 12453 6.875948 TTAGTGCTTCATGTTGTATGTTGT 57.124 33.333 0.00 0.00 0.00 3.32
9768 12494 6.037500 TGTTGCATGTTTGATAGATGACTAGC 59.962 38.462 0.00 0.00 35.81 3.42
9790 12516 2.893489 GGCAGGAAATCTGTTCCTTGTT 59.107 45.455 4.86 0.00 46.21 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.