Multiple sequence alignment - TraesCS1A01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G365300 chr1A 100.000 3827 0 0 1 3827 544491873 544495699 0.000000e+00 7068
1 TraesCS1A01G365300 chr1A 87.879 132 16 0 1024 1155 544487028 544487159 5.120000e-34 156
2 TraesCS1A01G365300 chr1D 91.174 2572 146 34 733 3256 449309484 449312022 0.000000e+00 3417
3 TraesCS1A01G365300 chr1D 92.895 563 27 5 3269 3827 449312421 449312974 0.000000e+00 806
4 TraesCS1A01G365300 chr1D 87.215 219 24 4 416 633 449309157 449309372 2.950000e-61 246
5 TraesCS1A01G365300 chr1D 90.152 132 13 0 1024 1155 449281820 449281951 5.080000e-39 172
6 TraesCS1A01G365300 chr1D 91.964 112 9 0 3716 3827 319561467 319561578 1.420000e-34 158
7 TraesCS1A01G365300 chr1B 91.554 1622 84 24 1418 3005 614968414 614970016 0.000000e+00 2187
8 TraesCS1A01G365300 chr1B 87.925 853 60 17 531 1362 614967500 614968330 0.000000e+00 965
9 TraesCS1A01G365300 chr1B 91.754 570 34 7 3263 3827 614970041 614970602 0.000000e+00 780
10 TraesCS1A01G365300 chr1B 88.971 136 15 0 1020 1155 614942619 614942754 6.580000e-38 169
11 TraesCS1A01G365300 chr3B 85.519 1022 99 30 1020 2011 8686897 8685895 0.000000e+00 1022
12 TraesCS1A01G365300 chr3B 80.864 810 92 33 2035 2790 8685817 8685017 2.560000e-161 579
13 TraesCS1A01G365300 chr3A 87.184 632 64 12 1406 2033 13189247 13189865 0.000000e+00 702
14 TraesCS1A01G365300 chr3A 83.577 548 41 19 2290 2789 13190166 13190712 5.790000e-128 468
15 TraesCS1A01G365300 chr3A 78.715 794 79 53 628 1363 13188129 13188890 7.540000e-122 448
16 TraesCS1A01G365300 chr3A 85.714 238 34 0 3019 3256 41103267 41103030 6.350000e-63 252
17 TraesCS1A01G365300 chr3A 85.356 239 35 0 3018 3256 743686394 743686156 8.210000e-62 248
18 TraesCS1A01G365300 chr3A 91.195 159 13 1 209 367 35417694 35417851 8.330000e-52 215
19 TraesCS1A01G365300 chr3D 86.645 614 63 13 1406 2013 7123917 7123317 0.000000e+00 662
20 TraesCS1A01G365300 chr3D 80.729 768 87 32 2035 2758 7123254 7122504 3.360000e-150 542
21 TraesCS1A01G365300 chr3D 79.768 776 85 47 628 1363 7124978 7124235 7.380000e-137 497
22 TraesCS1A01G365300 chr3D 85.714 238 34 0 3019 3256 346865475 346865238 6.350000e-63 252
23 TraesCS1A01G365300 chr3D 92.857 112 8 0 3716 3827 53783129 53783240 3.060000e-36 163
24 TraesCS1A01G365300 chr3D 92.857 112 8 0 3716 3827 141484650 141484539 3.060000e-36 163
25 TraesCS1A01G365300 chr3D 91.071 112 10 0 3716 3827 301332253 301332364 6.620000e-33 152
26 TraesCS1A01G365300 chr4D 85.714 238 34 0 3019 3256 69179821 69179584 6.350000e-63 252
27 TraesCS1A01G365300 chr4D 86.036 222 29 2 3036 3256 122202347 122202127 1.780000e-58 237
28 TraesCS1A01G365300 chr7A 84.937 239 34 2 3019 3256 675079753 675079990 1.370000e-59 241
29 TraesCS1A01G365300 chr5A 84.711 242 36 1 3015 3256 578233730 578233490 1.370000e-59 241
30 TraesCS1A01G365300 chr5A 84.362 243 33 3 3015 3256 229576247 229576485 2.300000e-57 233
31 TraesCS1A01G365300 chr5A 92.405 158 11 1 209 365 364361380 364361223 1.380000e-54 224
32 TraesCS1A01G365300 chr5A 91.083 157 14 0 209 365 640098712 640098868 2.990000e-51 213
33 TraesCS1A01G365300 chr4A 92.308 156 12 0 209 364 639205354 639205509 4.980000e-54 222
34 TraesCS1A01G365300 chr7D 94.393 107 6 0 3721 3827 53741739 53741633 8.510000e-37 165
35 TraesCS1A01G365300 chr7D 92.857 112 8 0 3716 3827 221986255 221986144 3.060000e-36 163
36 TraesCS1A01G365300 chr7D 91.964 112 9 0 3716 3827 488105882 488105993 1.420000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G365300 chr1A 544491873 544495699 3826 False 7068.000000 7068 100.000000 1 3827 1 chr1A.!!$F2 3826
1 TraesCS1A01G365300 chr1D 449309157 449312974 3817 False 1489.666667 3417 90.428000 416 3827 3 chr1D.!!$F3 3411
2 TraesCS1A01G365300 chr1B 614967500 614970602 3102 False 1310.666667 2187 90.411000 531 3827 3 chr1B.!!$F2 3296
3 TraesCS1A01G365300 chr3B 8685017 8686897 1880 True 800.500000 1022 83.191500 1020 2790 2 chr3B.!!$R1 1770
4 TraesCS1A01G365300 chr3A 13188129 13190712 2583 False 539.333333 702 83.158667 628 2789 3 chr3A.!!$F2 2161
5 TraesCS1A01G365300 chr3D 7122504 7124978 2474 True 567.000000 662 82.380667 628 2758 3 chr3D.!!$R3 2130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.034059 CAAAGAGAGCTGGTGGACGT 59.966 55.0 0.00 0.00 0.00 4.34 F
351 352 0.107508 CCGCCCAGTCATTCTGATGT 60.108 55.0 0.00 0.00 46.27 3.06 F
745 790 0.249120 TACCAGCACGTGATTCAGGG 59.751 55.0 22.23 13.33 0.00 4.45 F
1390 1552 0.191064 TCCCCACTTCCTCTGTCACT 59.809 55.0 0.00 0.00 0.00 3.41 F
1855 2355 0.240411 GTACGTCGCTCTGGTTCTGT 59.760 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1519 0.321996 GTGACAGAGGAAGTGGGGAC 59.678 60.000 0.00 0.0 0.00 4.46 R
1373 1523 1.001406 GACAGTGACAGAGGAAGTGGG 59.999 57.143 0.00 0.0 0.00 4.61 R
2447 3067 0.108804 AACGCGTCATCGGATTCAGT 60.109 50.000 14.44 0.0 37.56 3.41 R
2514 3156 0.687920 TCCCGTTCTGCACCACAATA 59.312 50.000 0.00 0.0 0.00 1.90 R
3308 4377 1.300620 CTCCGTGTCACTTTCCGCA 60.301 57.895 0.65 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.914771 AGAGGAGATGGAGAAGAAGGAG 58.085 50.000 0.00 0.00 0.00 3.69
22 23 2.365293 GAGGAGATGGAGAAGAAGGAGC 59.635 54.545 0.00 0.00 0.00 4.70
23 24 2.114616 GGAGATGGAGAAGAAGGAGCA 58.885 52.381 0.00 0.00 0.00 4.26
24 25 2.705127 GGAGATGGAGAAGAAGGAGCAT 59.295 50.000 0.00 0.00 0.00 3.79
25 26 3.900601 GGAGATGGAGAAGAAGGAGCATA 59.099 47.826 0.00 0.00 0.00 3.14
26 27 4.021192 GGAGATGGAGAAGAAGGAGCATAG 60.021 50.000 0.00 0.00 0.00 2.23
27 28 3.324556 AGATGGAGAAGAAGGAGCATAGC 59.675 47.826 0.00 0.00 0.00 2.97
28 29 2.470990 TGGAGAAGAAGGAGCATAGCA 58.529 47.619 0.00 0.00 0.00 3.49
29 30 3.044156 TGGAGAAGAAGGAGCATAGCAT 58.956 45.455 0.00 0.00 0.00 3.79
30 31 4.226384 TGGAGAAGAAGGAGCATAGCATA 58.774 43.478 0.00 0.00 0.00 3.14
31 32 4.039730 TGGAGAAGAAGGAGCATAGCATAC 59.960 45.833 0.00 0.00 0.00 2.39
32 33 4.562552 GGAGAAGAAGGAGCATAGCATACC 60.563 50.000 0.00 0.00 0.00 2.73
33 34 3.969976 AGAAGAAGGAGCATAGCATACCA 59.030 43.478 0.00 0.00 0.00 3.25
34 35 4.596643 AGAAGAAGGAGCATAGCATACCAT 59.403 41.667 0.00 0.00 0.00 3.55
35 36 4.550076 AGAAGGAGCATAGCATACCATC 57.450 45.455 0.00 0.00 0.00 3.51
36 37 4.166539 AGAAGGAGCATAGCATACCATCT 58.833 43.478 0.00 0.00 0.00 2.90
37 38 3.977134 AGGAGCATAGCATACCATCTG 57.023 47.619 0.00 0.00 0.00 2.90
38 39 2.570752 AGGAGCATAGCATACCATCTGG 59.429 50.000 0.00 0.00 42.17 3.86
39 40 2.568956 GGAGCATAGCATACCATCTGGA 59.431 50.000 2.55 0.00 38.94 3.86
40 41 3.594134 GAGCATAGCATACCATCTGGAC 58.406 50.000 2.55 0.00 38.94 4.02
41 42 2.028658 AGCATAGCATACCATCTGGACG 60.029 50.000 2.55 0.00 38.94 4.79
42 43 2.029020 GCATAGCATACCATCTGGACGA 60.029 50.000 2.55 0.00 38.94 4.20
43 44 3.368843 GCATAGCATACCATCTGGACGAT 60.369 47.826 2.55 0.00 38.94 3.73
49 50 2.111878 CATCTGGACGATGGCCCC 59.888 66.667 0.00 0.00 44.69 5.80
50 51 3.550431 ATCTGGACGATGGCCCCG 61.550 66.667 12.37 12.37 0.00 5.73
52 53 4.096003 CTGGACGATGGCCCCGTT 62.096 66.667 19.22 5.77 40.67 4.44
53 54 4.402528 TGGACGATGGCCCCGTTG 62.403 66.667 19.22 3.95 40.67 4.10
54 55 4.090588 GGACGATGGCCCCGTTGA 62.091 66.667 19.22 0.00 40.67 3.18
55 56 2.818274 GACGATGGCCCCGTTGAC 60.818 66.667 19.22 5.66 40.67 3.18
56 57 3.310860 GACGATGGCCCCGTTGACT 62.311 63.158 19.22 0.00 40.67 3.41
57 58 2.511600 CGATGGCCCCGTTGACTC 60.512 66.667 0.00 0.00 0.00 3.36
58 59 2.124695 GATGGCCCCGTTGACTCC 60.125 66.667 0.00 0.00 0.00 3.85
59 60 2.610859 ATGGCCCCGTTGACTCCT 60.611 61.111 0.00 0.00 0.00 3.69
60 61 2.595009 GATGGCCCCGTTGACTCCTC 62.595 65.000 0.00 0.00 0.00 3.71
61 62 4.097361 GGCCCCGTTGACTCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
62 63 3.319198 GCCCCGTTGACTCCTCCA 61.319 66.667 0.00 0.00 0.00 3.86
63 64 2.982130 CCCCGTTGACTCCTCCAG 59.018 66.667 0.00 0.00 0.00 3.86
64 65 2.266055 CCCGTTGACTCCTCCAGC 59.734 66.667 0.00 0.00 0.00 4.85
65 66 2.125912 CCGTTGACTCCTCCAGCG 60.126 66.667 0.00 0.00 37.85 5.18
66 67 2.636412 CCGTTGACTCCTCCAGCGA 61.636 63.158 0.00 0.00 39.96 4.93
67 68 1.153939 CGTTGACTCCTCCAGCGAG 60.154 63.158 0.00 0.00 39.96 5.03
68 69 1.867919 CGTTGACTCCTCCAGCGAGT 61.868 60.000 0.00 0.00 43.28 4.18
69 70 0.389166 GTTGACTCCTCCAGCGAGTG 60.389 60.000 0.00 0.00 40.67 3.51
70 71 2.159819 TTGACTCCTCCAGCGAGTGC 62.160 60.000 0.00 0.00 40.67 4.40
80 81 2.049063 GCGAGTGCTCCGTTGACT 60.049 61.111 0.00 0.00 38.39 3.41
81 82 1.664965 GCGAGTGCTCCGTTGACTT 60.665 57.895 0.00 0.00 38.39 3.01
82 83 1.891060 GCGAGTGCTCCGTTGACTTG 61.891 60.000 0.00 0.00 38.39 3.16
83 84 0.318699 CGAGTGCTCCGTTGACTTGA 60.319 55.000 0.00 0.00 0.00 3.02
84 85 1.670087 CGAGTGCTCCGTTGACTTGAT 60.670 52.381 0.00 0.00 0.00 2.57
85 86 1.996191 GAGTGCTCCGTTGACTTGATC 59.004 52.381 0.00 0.00 0.00 2.92
86 87 1.620819 AGTGCTCCGTTGACTTGATCT 59.379 47.619 0.00 0.00 0.00 2.75
87 88 1.996191 GTGCTCCGTTGACTTGATCTC 59.004 52.381 0.00 0.00 0.00 2.75
88 89 1.066858 TGCTCCGTTGACTTGATCTCC 60.067 52.381 0.00 0.00 0.00 3.71
89 90 1.205893 GCTCCGTTGACTTGATCTCCT 59.794 52.381 0.00 0.00 0.00 3.69
90 91 2.354203 GCTCCGTTGACTTGATCTCCTT 60.354 50.000 0.00 0.00 0.00 3.36
91 92 3.257393 CTCCGTTGACTTGATCTCCTTG 58.743 50.000 0.00 0.00 0.00 3.61
92 93 2.028112 TCCGTTGACTTGATCTCCTTGG 60.028 50.000 0.00 0.00 0.00 3.61
93 94 2.289694 CCGTTGACTTGATCTCCTTGGT 60.290 50.000 0.00 0.00 0.00 3.67
94 95 3.403038 CGTTGACTTGATCTCCTTGGTT 58.597 45.455 0.00 0.00 0.00 3.67
95 96 3.187227 CGTTGACTTGATCTCCTTGGTTG 59.813 47.826 0.00 0.00 0.00 3.77
96 97 2.783135 TGACTTGATCTCCTTGGTTGC 58.217 47.619 0.00 0.00 0.00 4.17
97 98 2.106338 TGACTTGATCTCCTTGGTTGCA 59.894 45.455 0.00 0.00 0.00 4.08
98 99 3.149196 GACTTGATCTCCTTGGTTGCAA 58.851 45.455 0.00 0.00 0.00 4.08
99 100 3.565307 ACTTGATCTCCTTGGTTGCAAA 58.435 40.909 0.00 0.00 0.00 3.68
100 101 3.960102 ACTTGATCTCCTTGGTTGCAAAA 59.040 39.130 0.00 0.00 0.00 2.44
101 102 4.202151 ACTTGATCTCCTTGGTTGCAAAAC 60.202 41.667 0.00 0.00 0.00 2.43
102 103 3.295093 TGATCTCCTTGGTTGCAAAACA 58.705 40.909 0.00 0.00 45.47 2.83
108 109 3.955291 TGGTTGCAAAACACCATCG 57.045 47.368 0.00 0.00 39.66 3.84
109 110 1.107114 TGGTTGCAAAACACCATCGT 58.893 45.000 0.00 0.00 39.66 3.73
110 111 1.202348 TGGTTGCAAAACACCATCGTG 60.202 47.619 0.00 0.00 39.66 4.35
111 112 1.066303 GGTTGCAAAACACCATCGTGA 59.934 47.619 0.00 0.00 43.14 4.35
112 113 2.480416 GGTTGCAAAACACCATCGTGAA 60.480 45.455 0.00 0.00 43.14 3.18
113 114 3.182967 GTTGCAAAACACCATCGTGAAA 58.817 40.909 0.00 0.00 43.14 2.69
114 115 3.077229 TGCAAAACACCATCGTGAAAG 57.923 42.857 0.00 0.00 43.14 2.62
115 116 2.223688 TGCAAAACACCATCGTGAAAGG 60.224 45.455 0.00 0.00 43.14 3.11
116 117 2.034053 GCAAAACACCATCGTGAAAGGA 59.966 45.455 0.00 0.00 43.14 3.36
117 118 3.490078 GCAAAACACCATCGTGAAAGGAA 60.490 43.478 0.00 0.00 43.14 3.36
118 119 4.677584 CAAAACACCATCGTGAAAGGAAA 58.322 39.130 0.00 0.00 43.14 3.13
119 120 4.568152 AAACACCATCGTGAAAGGAAAG 57.432 40.909 0.00 0.00 43.14 2.62
120 121 3.485463 ACACCATCGTGAAAGGAAAGA 57.515 42.857 0.00 0.00 43.14 2.52
121 122 3.815809 ACACCATCGTGAAAGGAAAGAA 58.184 40.909 0.00 0.00 43.14 2.52
122 123 4.204012 ACACCATCGTGAAAGGAAAGAAA 58.796 39.130 0.00 0.00 43.14 2.52
123 124 4.275936 ACACCATCGTGAAAGGAAAGAAAG 59.724 41.667 0.00 0.00 43.14 2.62
124 125 3.253432 ACCATCGTGAAAGGAAAGAAAGC 59.747 43.478 0.00 0.00 32.76 3.51
125 126 3.366374 CCATCGTGAAAGGAAAGAAAGCC 60.366 47.826 0.00 0.00 32.76 4.35
126 127 2.227194 TCGTGAAAGGAAAGAAAGCCC 58.773 47.619 0.00 0.00 0.00 5.19
127 128 1.069227 CGTGAAAGGAAAGAAAGCCCG 60.069 52.381 0.00 0.00 0.00 6.13
128 129 1.269723 GTGAAAGGAAAGAAAGCCCGG 59.730 52.381 0.00 0.00 0.00 5.73
129 130 0.888619 GAAAGGAAAGAAAGCCCGGG 59.111 55.000 19.09 19.09 0.00 5.73
130 131 0.541998 AAAGGAAAGAAAGCCCGGGG 60.542 55.000 25.28 9.31 0.00 5.73
131 132 2.362503 GGAAAGAAAGCCCGGGGG 60.363 66.667 25.28 2.24 38.57 5.40
146 147 4.329545 GGGGTGCGAGTGGAGCAA 62.330 66.667 0.00 0.00 46.97 3.91
147 148 2.045926 GGGTGCGAGTGGAGCAAT 60.046 61.111 0.00 0.00 46.97 3.56
148 149 2.401766 GGGTGCGAGTGGAGCAATG 61.402 63.158 0.00 0.00 46.97 2.82
149 150 1.375908 GGTGCGAGTGGAGCAATGA 60.376 57.895 0.00 0.00 46.97 2.57
150 151 1.364626 GGTGCGAGTGGAGCAATGAG 61.365 60.000 0.00 0.00 46.97 2.90
151 152 0.671781 GTGCGAGTGGAGCAATGAGT 60.672 55.000 0.00 0.00 46.97 3.41
152 153 0.035317 TGCGAGTGGAGCAATGAGTT 59.965 50.000 0.00 0.00 42.18 3.01
153 154 0.445436 GCGAGTGGAGCAATGAGTTG 59.555 55.000 0.00 0.00 38.39 3.16
154 155 1.941209 GCGAGTGGAGCAATGAGTTGA 60.941 52.381 0.00 0.00 37.53 3.18
155 156 2.416747 CGAGTGGAGCAATGAGTTGAA 58.583 47.619 0.00 0.00 37.53 2.69
156 157 2.414481 CGAGTGGAGCAATGAGTTGAAG 59.586 50.000 0.00 0.00 37.53 3.02
157 158 3.668447 GAGTGGAGCAATGAGTTGAAGA 58.332 45.455 0.00 0.00 37.53 2.87
158 159 3.672808 AGTGGAGCAATGAGTTGAAGAG 58.327 45.455 0.00 0.00 37.53 2.85
159 160 2.746362 GTGGAGCAATGAGTTGAAGAGG 59.254 50.000 0.00 0.00 37.53 3.69
160 161 2.290514 TGGAGCAATGAGTTGAAGAGGG 60.291 50.000 0.00 0.00 37.53 4.30
161 162 2.026822 GGAGCAATGAGTTGAAGAGGGA 60.027 50.000 0.00 0.00 37.53 4.20
162 163 3.560025 GGAGCAATGAGTTGAAGAGGGAA 60.560 47.826 0.00 0.00 37.53 3.97
163 164 4.074970 GAGCAATGAGTTGAAGAGGGAAA 58.925 43.478 0.00 0.00 37.53 3.13
164 165 4.473444 AGCAATGAGTTGAAGAGGGAAAA 58.527 39.130 0.00 0.00 37.53 2.29
165 166 4.522022 AGCAATGAGTTGAAGAGGGAAAAG 59.478 41.667 0.00 0.00 37.53 2.27
166 167 4.321527 GCAATGAGTTGAAGAGGGAAAAGG 60.322 45.833 0.00 0.00 37.53 3.11
167 168 3.508845 TGAGTTGAAGAGGGAAAAGGG 57.491 47.619 0.00 0.00 0.00 3.95
168 169 2.163509 GAGTTGAAGAGGGAAAAGGGC 58.836 52.381 0.00 0.00 0.00 5.19
169 170 0.881796 GTTGAAGAGGGAAAAGGGCG 59.118 55.000 0.00 0.00 0.00 6.13
170 171 0.893727 TTGAAGAGGGAAAAGGGCGC 60.894 55.000 0.00 0.00 0.00 6.53
171 172 1.303317 GAAGAGGGAAAAGGGCGCA 60.303 57.895 10.83 0.00 0.00 6.09
172 173 0.893727 GAAGAGGGAAAAGGGCGCAA 60.894 55.000 10.83 0.00 0.00 4.85
173 174 0.469144 AAGAGGGAAAAGGGCGCAAA 60.469 50.000 10.83 0.00 0.00 3.68
174 175 0.895559 AGAGGGAAAAGGGCGCAAAG 60.896 55.000 10.83 0.00 0.00 2.77
175 176 0.893727 GAGGGAAAAGGGCGCAAAGA 60.894 55.000 10.83 0.00 0.00 2.52
176 177 0.895559 AGGGAAAAGGGCGCAAAGAG 60.896 55.000 10.83 0.00 0.00 2.85
177 178 0.893727 GGGAAAAGGGCGCAAAGAGA 60.894 55.000 10.83 0.00 0.00 3.10
178 179 0.523519 GGAAAAGGGCGCAAAGAGAG 59.476 55.000 10.83 0.00 0.00 3.20
179 180 0.109551 GAAAAGGGCGCAAAGAGAGC 60.110 55.000 10.83 0.00 42.91 4.09
180 181 0.538287 AAAAGGGCGCAAAGAGAGCT 60.538 50.000 10.83 0.00 43.21 4.09
181 182 1.239968 AAAGGGCGCAAAGAGAGCTG 61.240 55.000 10.83 0.00 43.21 4.24
182 183 3.130160 GGGCGCAAAGAGAGCTGG 61.130 66.667 10.83 0.00 43.21 4.85
183 184 2.359230 GGCGCAAAGAGAGCTGGT 60.359 61.111 10.83 0.00 43.21 4.00
184 185 2.684843 GGCGCAAAGAGAGCTGGTG 61.685 63.158 10.83 0.00 43.21 4.17
185 186 2.684843 GCGCAAAGAGAGCTGGTGG 61.685 63.158 0.30 0.00 40.21 4.61
186 187 1.004560 CGCAAAGAGAGCTGGTGGA 60.005 57.895 0.00 0.00 0.00 4.02
187 188 1.294659 CGCAAAGAGAGCTGGTGGAC 61.295 60.000 0.00 0.00 0.00 4.02
188 189 1.294659 GCAAAGAGAGCTGGTGGACG 61.295 60.000 0.00 0.00 0.00 4.79
189 190 0.034059 CAAAGAGAGCTGGTGGACGT 59.966 55.000 0.00 0.00 0.00 4.34
190 191 0.034059 AAAGAGAGCTGGTGGACGTG 59.966 55.000 0.00 0.00 0.00 4.49
191 192 0.827925 AAGAGAGCTGGTGGACGTGA 60.828 55.000 0.00 0.00 0.00 4.35
192 193 1.080434 GAGAGCTGGTGGACGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
193 194 2.430921 GAGCTGGTGGACGTGACG 60.431 66.667 2.24 2.24 0.00 4.35
194 195 4.664677 AGCTGGTGGACGTGACGC 62.665 66.667 4.25 0.00 0.00 5.19
211 212 4.552365 CGGGCGGGCATGATCACT 62.552 66.667 0.00 0.00 0.00 3.41
212 213 2.903855 GGGCGGGCATGATCACTG 60.904 66.667 0.00 0.00 0.00 3.66
213 214 2.903855 GGCGGGCATGATCACTGG 60.904 66.667 0.00 0.00 0.00 4.00
214 215 3.589881 GCGGGCATGATCACTGGC 61.590 66.667 17.56 17.56 38.38 4.85
215 216 3.274586 CGGGCATGATCACTGGCG 61.275 66.667 18.50 13.02 39.90 5.69
216 217 2.903855 GGGCATGATCACTGGCGG 60.904 66.667 18.50 0.00 39.90 6.13
217 218 2.190313 GGCATGATCACTGGCGGA 59.810 61.111 0.00 0.00 0.00 5.54
218 219 1.890979 GGCATGATCACTGGCGGAG 60.891 63.158 0.00 0.00 0.00 4.63
219 220 1.153289 GCATGATCACTGGCGGAGT 60.153 57.895 0.00 0.00 34.02 3.85
220 221 0.745845 GCATGATCACTGGCGGAGTT 60.746 55.000 0.00 0.00 29.75 3.01
221 222 1.742761 CATGATCACTGGCGGAGTTT 58.257 50.000 0.00 0.00 29.75 2.66
222 223 2.905075 CATGATCACTGGCGGAGTTTA 58.095 47.619 0.00 0.00 29.75 2.01
223 224 2.672961 TGATCACTGGCGGAGTTTAG 57.327 50.000 0.00 0.00 29.75 1.85
224 225 1.899814 TGATCACTGGCGGAGTTTAGT 59.100 47.619 0.00 0.00 29.75 2.24
225 226 2.271800 GATCACTGGCGGAGTTTAGTG 58.728 52.381 0.00 0.00 41.34 2.74
226 227 0.320421 TCACTGGCGGAGTTTAGTGC 60.320 55.000 0.00 0.00 40.15 4.40
227 228 0.602638 CACTGGCGGAGTTTAGTGCA 60.603 55.000 0.00 0.00 34.78 4.57
228 229 0.107831 ACTGGCGGAGTTTAGTGCAA 59.892 50.000 0.00 0.00 0.00 4.08
229 230 0.798776 CTGGCGGAGTTTAGTGCAAG 59.201 55.000 0.00 0.00 0.00 4.01
230 231 1.234615 TGGCGGAGTTTAGTGCAAGC 61.235 55.000 0.00 0.00 0.00 4.01
231 232 1.234615 GGCGGAGTTTAGTGCAAGCA 61.235 55.000 0.00 0.00 0.00 3.91
232 233 0.591170 GCGGAGTTTAGTGCAAGCAA 59.409 50.000 0.00 0.00 0.00 3.91
233 234 1.001815 GCGGAGTTTAGTGCAAGCAAA 60.002 47.619 0.00 0.00 0.00 3.68
234 235 2.542824 GCGGAGTTTAGTGCAAGCAAAA 60.543 45.455 0.00 0.00 0.00 2.44
235 236 3.042887 CGGAGTTTAGTGCAAGCAAAAC 58.957 45.455 12.20 12.20 30.84 2.43
236 237 3.243068 CGGAGTTTAGTGCAAGCAAAACT 60.243 43.478 19.26 19.26 38.75 2.66
237 238 4.044426 GGAGTTTAGTGCAAGCAAAACTG 58.956 43.478 22.46 0.00 37.22 3.16
238 239 4.044426 GAGTTTAGTGCAAGCAAAACTGG 58.956 43.478 22.46 0.00 37.22 4.00
239 240 3.123050 GTTTAGTGCAAGCAAAACTGGG 58.877 45.455 12.64 0.00 0.00 4.45
240 241 0.673437 TAGTGCAAGCAAAACTGGGC 59.327 50.000 0.00 0.00 0.00 5.36
241 242 1.950630 GTGCAAGCAAAACTGGGCG 60.951 57.895 0.00 0.00 33.35 6.13
242 243 2.356194 GCAAGCAAAACTGGGCGG 60.356 61.111 0.00 0.00 34.54 6.13
243 244 2.339712 CAAGCAAAACTGGGCGGG 59.660 61.111 0.00 0.00 34.54 6.13
244 245 2.917227 AAGCAAAACTGGGCGGGG 60.917 61.111 0.00 0.00 34.54 5.73
245 246 4.994756 AGCAAAACTGGGCGGGGG 62.995 66.667 0.00 0.00 34.54 5.40
261 262 3.705289 GGCCCGCCCAATTTTGCT 61.705 61.111 0.00 0.00 0.00 3.91
262 263 2.434709 GCCCGCCCAATTTTGCTG 60.435 61.111 0.00 0.00 0.00 4.41
263 264 2.434709 CCCGCCCAATTTTGCTGC 60.435 61.111 0.00 0.00 0.00 5.25
264 265 2.343018 CCGCCCAATTTTGCTGCA 59.657 55.556 0.00 0.00 0.00 4.41
265 266 1.301558 CCGCCCAATTTTGCTGCAA 60.302 52.632 11.69 11.69 0.00 4.08
266 267 0.883814 CCGCCCAATTTTGCTGCAAA 60.884 50.000 22.84 22.84 0.00 3.68
267 268 0.235404 CGCCCAATTTTGCTGCAAAC 59.765 50.000 25.99 13.14 32.79 2.93
268 269 0.592637 GCCCAATTTTGCTGCAAACC 59.407 50.000 25.99 8.00 32.79 3.27
269 270 1.964552 CCCAATTTTGCTGCAAACCA 58.035 45.000 25.99 14.06 32.79 3.67
270 271 2.295885 CCCAATTTTGCTGCAAACCAA 58.704 42.857 25.99 13.34 32.79 3.67
271 272 2.885894 CCCAATTTTGCTGCAAACCAAT 59.114 40.909 25.99 14.99 32.79 3.16
272 273 3.304794 CCCAATTTTGCTGCAAACCAATG 60.305 43.478 25.99 19.81 32.79 2.82
273 274 3.304794 CCAATTTTGCTGCAAACCAATGG 60.305 43.478 25.99 23.68 32.79 3.16
274 275 1.964552 TTTTGCTGCAAACCAATGGG 58.035 45.000 25.99 0.00 41.29 4.00
275 276 0.534652 TTTGCTGCAAACCAATGGGC 60.535 50.000 22.84 0.00 37.90 5.36
276 277 2.046988 GCTGCAAACCAATGGGCC 60.047 61.111 3.55 0.00 37.90 5.80
277 278 2.586293 GCTGCAAACCAATGGGCCT 61.586 57.895 4.53 0.00 37.90 5.19
278 279 2.060370 CTGCAAACCAATGGGCCTT 58.940 52.632 4.53 0.00 37.90 4.35
279 280 0.397564 CTGCAAACCAATGGGCCTTT 59.602 50.000 4.53 0.76 37.90 3.11
280 281 1.622811 CTGCAAACCAATGGGCCTTTA 59.377 47.619 4.53 0.00 37.90 1.85
281 282 1.622811 TGCAAACCAATGGGCCTTTAG 59.377 47.619 4.53 0.00 37.90 1.85
282 283 1.066215 GCAAACCAATGGGCCTTTAGG 60.066 52.381 4.53 11.43 37.90 2.69
301 302 1.613836 GCAGAAATGGGCCATAGAGG 58.386 55.000 21.54 11.35 41.84 3.69
302 303 1.143684 GCAGAAATGGGCCATAGAGGA 59.856 52.381 21.54 0.00 41.22 3.71
303 304 2.423373 GCAGAAATGGGCCATAGAGGAA 60.423 50.000 21.54 0.00 41.22 3.36
304 305 3.902218 CAGAAATGGGCCATAGAGGAAA 58.098 45.455 21.54 0.00 41.22 3.13
305 306 4.280819 CAGAAATGGGCCATAGAGGAAAA 58.719 43.478 21.54 0.00 41.22 2.29
306 307 4.711355 CAGAAATGGGCCATAGAGGAAAAA 59.289 41.667 21.54 0.00 41.22 1.94
336 337 1.443828 TTTTTCAAACTGGCCCGCC 59.556 52.632 0.00 0.00 0.00 6.13
337 338 2.034048 TTTTTCAAACTGGCCCGCCC 62.034 55.000 0.00 0.00 34.56 6.13
338 339 3.740495 TTTCAAACTGGCCCGCCCA 62.740 57.895 0.00 0.00 42.79 5.36
345 346 4.424711 TGGCCCGCCCAGTCATTC 62.425 66.667 0.00 0.00 39.18 2.67
346 347 4.115199 GGCCCGCCCAGTCATTCT 62.115 66.667 0.00 0.00 0.00 2.40
347 348 2.825836 GCCCGCCCAGTCATTCTG 60.826 66.667 0.00 0.00 43.27 3.02
348 349 2.989639 CCCGCCCAGTCATTCTGA 59.010 61.111 0.00 0.00 46.27 3.27
349 350 1.528824 CCCGCCCAGTCATTCTGAT 59.471 57.895 0.00 0.00 46.27 2.90
350 351 0.816825 CCCGCCCAGTCATTCTGATG 60.817 60.000 0.00 0.00 46.27 3.07
351 352 0.107508 CCGCCCAGTCATTCTGATGT 60.108 55.000 0.00 0.00 46.27 3.06
352 353 1.138859 CCGCCCAGTCATTCTGATGTA 59.861 52.381 0.00 0.00 46.27 2.29
353 354 2.477825 CGCCCAGTCATTCTGATGTAG 58.522 52.381 0.00 0.00 46.27 2.74
354 355 2.216898 GCCCAGTCATTCTGATGTAGC 58.783 52.381 0.00 0.00 46.27 3.58
355 356 2.158842 GCCCAGTCATTCTGATGTAGCT 60.159 50.000 0.00 0.00 46.27 3.32
356 357 3.726607 CCCAGTCATTCTGATGTAGCTC 58.273 50.000 0.00 0.00 46.27 4.09
357 358 3.494048 CCCAGTCATTCTGATGTAGCTCC 60.494 52.174 0.00 0.00 46.27 4.70
358 359 3.379240 CAGTCATTCTGATGTAGCTCCG 58.621 50.000 0.00 0.00 46.27 4.63
359 360 2.131183 GTCATTCTGATGTAGCTCCGC 58.869 52.381 0.00 0.00 34.77 5.54
360 361 2.034878 TCATTCTGATGTAGCTCCGCT 58.965 47.619 0.00 0.00 35.96 5.52
361 362 3.004839 GTCATTCTGATGTAGCTCCGCTA 59.995 47.826 0.00 0.00 34.13 4.26
368 369 3.900892 TAGCTCCGCTACTGCCGC 61.901 66.667 0.00 0.00 40.44 6.53
370 371 4.899239 GCTCCGCTACTGCCGCAT 62.899 66.667 0.00 0.00 35.36 4.73
371 372 2.963854 CTCCGCTACTGCCGCATG 60.964 66.667 0.00 0.00 35.36 4.06
372 373 4.529219 TCCGCTACTGCCGCATGG 62.529 66.667 0.00 0.00 35.36 3.66
373 374 4.838152 CCGCTACTGCCGCATGGT 62.838 66.667 0.00 0.00 37.67 3.55
374 375 2.106131 CGCTACTGCCGCATGGTA 59.894 61.111 0.00 0.00 37.67 3.25
375 376 2.237751 CGCTACTGCCGCATGGTAC 61.238 63.158 0.00 0.00 37.67 3.34
376 377 2.237751 GCTACTGCCGCATGGTACG 61.238 63.158 0.00 0.00 37.67 3.67
382 383 3.125607 CCGCATGGTACGGCTAGA 58.874 61.111 0.00 0.00 44.90 2.43
383 384 1.299926 CCGCATGGTACGGCTAGAC 60.300 63.158 0.00 0.00 44.90 2.59
384 385 1.299926 CGCATGGTACGGCTAGACC 60.300 63.158 0.00 0.00 36.17 3.85
387 388 4.349682 TGGTACGGCTAGACCAGG 57.650 61.111 0.00 0.00 40.87 4.45
388 389 1.385368 TGGTACGGCTAGACCAGGT 59.615 57.895 0.00 0.00 40.87 4.00
389 390 0.968901 TGGTACGGCTAGACCAGGTG 60.969 60.000 0.00 0.00 40.87 4.00
390 391 1.141234 GTACGGCTAGACCAGGTGC 59.859 63.158 0.00 0.00 39.03 5.01
391 392 2.412323 TACGGCTAGACCAGGTGCG 61.412 63.158 0.00 0.00 39.03 5.34
393 394 4.082523 GGCTAGACCAGGTGCGCA 62.083 66.667 5.66 5.66 38.86 6.09
394 395 2.510238 GCTAGACCAGGTGCGCAG 60.510 66.667 12.22 0.12 0.00 5.18
409 410 3.171987 CAGCTAGTGCGGCAACTG 58.828 61.111 3.23 6.71 45.42 3.16
410 411 2.046892 AGCTAGTGCGGCAACTGG 60.047 61.111 3.23 7.84 45.42 4.00
411 412 2.358737 GCTAGTGCGGCAACTGGT 60.359 61.111 3.23 0.00 31.68 4.00
412 413 1.966451 GCTAGTGCGGCAACTGGTT 60.966 57.895 3.23 0.00 31.68 3.67
413 414 1.515521 GCTAGTGCGGCAACTGGTTT 61.516 55.000 3.23 0.00 31.68 3.27
414 415 0.951558 CTAGTGCGGCAACTGGTTTT 59.048 50.000 3.23 0.00 0.00 2.43
415 416 0.665835 TAGTGCGGCAACTGGTTTTG 59.334 50.000 3.23 0.00 0.00 2.44
416 417 1.140804 GTGCGGCAACTGGTTTTGT 59.859 52.632 3.23 0.00 0.00 2.83
417 418 0.869880 GTGCGGCAACTGGTTTTGTC 60.870 55.000 3.23 0.00 0.00 3.18
418 419 1.299850 GCGGCAACTGGTTTTGTCC 60.300 57.895 0.00 0.00 0.00 4.02
419 420 1.008995 CGGCAACTGGTTTTGTCCG 60.009 57.895 0.00 0.00 38.70 4.79
420 421 1.362355 GGCAACTGGTTTTGTCCGG 59.638 57.895 0.00 0.00 39.57 5.14
421 422 1.362355 GCAACTGGTTTTGTCCGGG 59.638 57.895 0.00 0.00 38.12 5.73
422 423 1.388837 GCAACTGGTTTTGTCCGGGT 61.389 55.000 0.00 0.00 38.12 5.28
423 424 0.666374 CAACTGGTTTTGTCCGGGTC 59.334 55.000 0.00 0.00 38.12 4.46
424 425 0.816421 AACTGGTTTTGTCCGGGTCG 60.816 55.000 0.00 0.00 38.12 4.79
436 437 1.817941 CGGGTCGGCCATTAACCAG 60.818 63.158 9.07 1.21 34.62 4.00
445 446 2.007608 GCCATTAACCAGTTCGACTCC 58.992 52.381 0.00 0.00 0.00 3.85
446 447 2.614481 GCCATTAACCAGTTCGACTCCA 60.614 50.000 0.00 0.00 0.00 3.86
484 485 4.835284 AACAACACAAAATGGGGAAAGT 57.165 36.364 0.00 0.00 0.00 2.66
493 494 2.052782 ATGGGGAAAGTTGCGGTATC 57.947 50.000 0.00 0.00 0.00 2.24
496 497 0.392060 GGGAAAGTTGCGGTATCGGT 60.392 55.000 0.00 0.00 36.79 4.69
517 518 5.465056 CGGTGTAAAATGTGGCAAGAATTTT 59.535 36.000 16.31 16.31 37.32 1.82
551 552 9.730705 ATGGGTAATATATGTCACAAAGATCAG 57.269 33.333 0.00 0.00 0.00 2.90
649 689 3.754965 AGTTGAGTATCCAGCTGCAAAA 58.245 40.909 8.66 0.00 0.00 2.44
650 690 4.144297 AGTTGAGTATCCAGCTGCAAAAA 58.856 39.130 8.66 0.00 0.00 1.94
672 713 2.204237 TGAATGCCAAGATCGTCGATG 58.796 47.619 13.54 0.00 0.00 3.84
673 714 0.940126 AATGCCAAGATCGTCGATGC 59.060 50.000 13.54 10.27 0.00 3.91
694 735 1.531149 ACAAAGTCAAACAGATCGCCG 59.469 47.619 0.00 0.00 0.00 6.46
712 753 4.491409 GGGAGAAGAAGCCCCGGC 62.491 72.222 0.00 0.00 38.45 6.13
745 790 0.249120 TACCAGCACGTGATTCAGGG 59.751 55.000 22.23 13.33 0.00 4.45
825 885 1.128692 CCGGATCTTGTTTCGTTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
1016 1132 3.515286 CATGGCGCTCCCTGCAAG 61.515 66.667 7.64 0.00 43.06 4.01
1378 1528 1.847737 TGGTACACTTTTGTCCCCACT 59.152 47.619 0.00 0.00 37.15 4.00
1382 1532 1.569072 ACACTTTTGTCCCCACTTCCT 59.431 47.619 0.00 0.00 0.00 3.36
1383 1533 2.230660 CACTTTTGTCCCCACTTCCTC 58.769 52.381 0.00 0.00 0.00 3.71
1390 1552 0.191064 TCCCCACTTCCTCTGTCACT 59.809 55.000 0.00 0.00 0.00 3.41
1613 2113 4.814294 CCTCGTACCGCCAGCACC 62.814 72.222 0.00 0.00 0.00 5.01
1855 2355 0.240411 GTACGTCGCTCTGGTTCTGT 59.760 55.000 0.00 0.00 0.00 3.41
1878 2378 9.212641 CTGTATCTGAACTGAAATTTTCTCTGA 57.787 33.333 10.33 9.02 0.00 3.27
1887 2388 4.024048 TGAAATTTTCTCTGACAGGCGAAC 60.024 41.667 10.33 0.00 0.00 3.95
1909 2421 7.360861 CGAACTCTGCTGGTGTTTATATTTTGA 60.361 37.037 4.94 0.00 32.64 2.69
2044 2612 9.077885 TCTTTGCAAATACTAGAATTTTCACCT 57.922 29.630 13.23 0.00 0.00 4.00
2077 2645 5.445673 GCTGAATGTGTCATCTTCTTCTTCG 60.446 44.000 0.00 0.00 35.07 3.79
2093 2668 1.399440 CTTCGTCATGTCAGCATTGGG 59.601 52.381 0.00 0.00 31.99 4.12
2177 2752 1.278637 CAACACCAAGAACGGCGTC 59.721 57.895 15.17 7.22 0.00 5.19
2234 2811 5.859205 ACCAATAGCCAAAATTCTCATCC 57.141 39.130 0.00 0.00 0.00 3.51
2262 2839 1.243342 AATGGCCGTGTGACATGGTG 61.243 55.000 23.62 1.31 42.15 4.17
2285 2873 6.019640 GTGACATTTTTGTGTGATGTTCTTGG 60.020 38.462 0.00 0.00 34.38 3.61
2288 2876 3.961477 TTTGTGTGATGTTCTTGGTCG 57.039 42.857 0.00 0.00 0.00 4.79
2406 3015 2.264794 CTCCAACCGGGGAACTCG 59.735 66.667 6.32 0.00 32.53 4.18
2461 3081 2.854777 CGTCTTGACTGAATCCGATGAC 59.145 50.000 0.00 0.00 0.00 3.06
2464 3084 0.525455 TGACTGAATCCGATGACGCG 60.525 55.000 3.53 3.53 38.29 6.01
2496 3138 4.908687 AGCAGAACGCCGTGCACA 62.909 61.111 18.64 0.00 44.04 4.57
2514 3156 3.316308 GCACATCTCTGAACTTGTTTGGT 59.684 43.478 0.00 0.00 0.00 3.67
2828 3487 2.089980 AGATGCTGCTGATTGGTGAAC 58.910 47.619 0.00 0.00 0.00 3.18
2955 3626 4.159135 AGCCAAGCATAATTTCCAAGACAG 59.841 41.667 0.00 0.00 0.00 3.51
2956 3627 4.678840 GCCAAGCATAATTTCCAAGACAGG 60.679 45.833 0.00 0.00 0.00 4.00
2989 3661 5.597806 TGATAATATCCACGAGTTGTCCAC 58.402 41.667 0.00 0.00 0.00 4.02
3025 3708 6.930068 AGGTAACACAACAGTATACTTCCT 57.070 37.500 1.56 0.00 41.41 3.36
3026 3709 6.698380 AGGTAACACAACAGTATACTTCCTG 58.302 40.000 1.56 3.55 41.41 3.86
3027 3710 5.350640 GGTAACACAACAGTATACTTCCTGC 59.649 44.000 1.56 0.00 31.76 4.85
3028 3711 4.617253 ACACAACAGTATACTTCCTGCA 57.383 40.909 1.56 0.00 31.76 4.41
3031 3714 4.572389 CACAACAGTATACTTCCTGCATCC 59.428 45.833 1.56 0.00 31.76 3.51
3032 3715 4.225042 ACAACAGTATACTTCCTGCATCCA 59.775 41.667 1.56 0.00 31.76 3.41
3034 3717 3.134804 ACAGTATACTTCCTGCATCCACC 59.865 47.826 1.56 0.00 31.76 4.61
3040 3723 3.624777 ACTTCCTGCATCCACCAATAAG 58.375 45.455 0.00 0.00 0.00 1.73
3042 3725 3.003394 TCCTGCATCCACCAATAAGTG 57.997 47.619 0.00 0.00 37.51 3.16
3046 3729 4.260985 CTGCATCCACCAATAAGTGTACA 58.739 43.478 0.00 0.00 35.93 2.90
3048 3731 5.260424 TGCATCCACCAATAAGTGTACATT 58.740 37.500 0.00 0.00 35.93 2.71
3060 3743 9.341899 CAATAAGTGTACATTTAGCTTTTGTCC 57.658 33.333 15.04 0.00 0.00 4.02
3061 3744 6.952773 AAGTGTACATTTAGCTTTTGTCCA 57.047 33.333 1.14 0.00 0.00 4.02
3062 3745 6.952773 AGTGTACATTTAGCTTTTGTCCAA 57.047 33.333 0.00 0.00 0.00 3.53
3063 3746 7.341445 AGTGTACATTTAGCTTTTGTCCAAA 57.659 32.000 0.00 0.00 0.00 3.28
3064 3747 7.425606 AGTGTACATTTAGCTTTTGTCCAAAG 58.574 34.615 0.00 0.00 44.44 2.77
3068 3751 9.738832 GTACATTTAGCTTTTGTCCAAAGTTAA 57.261 29.630 0.00 2.71 42.96 2.01
3076 3759 9.713713 AGCTTTTGTCCAAAGTTAAAGTTTTAA 57.286 25.926 0.00 0.00 43.62 1.52
3120 3803 5.404466 AAAAAGTAGCAGCATTTATGGCA 57.596 34.783 0.00 0.00 0.00 4.92
3121 3804 4.376340 AAAGTAGCAGCATTTATGGCAC 57.624 40.909 0.00 0.00 0.00 5.01
3129 3812 6.507023 AGCAGCATTTATGGCACTAAATTAC 58.493 36.000 0.00 7.53 30.68 1.89
3142 3825 9.914834 TGGCACTAAATTACTATAACTGGATTT 57.085 29.630 0.00 0.00 0.00 2.17
3195 3878 8.648097 CCAATTTGATGTCGTATATACTACTGC 58.352 37.037 16.06 9.81 0.00 4.40
3196 3879 9.411801 CAATTTGATGTCGTATATACTACTGCT 57.588 33.333 16.06 4.15 0.00 4.24
3197 3880 9.627395 AATTTGATGTCGTATATACTACTGCTC 57.373 33.333 16.06 11.32 0.00 4.26
3199 3882 7.981102 TGATGTCGTATATACTACTGCTCTT 57.019 36.000 16.06 0.00 0.00 2.85
3200 3883 8.392372 TGATGTCGTATATACTACTGCTCTTT 57.608 34.615 16.06 0.00 0.00 2.52
3202 3885 9.119329 GATGTCGTATATACTACTGCTCTTTTG 57.881 37.037 16.06 0.00 0.00 2.44
3203 3886 7.423199 TGTCGTATATACTACTGCTCTTTTGG 58.577 38.462 16.06 0.00 0.00 3.28
3204 3887 7.283807 TGTCGTATATACTACTGCTCTTTTGGA 59.716 37.037 16.06 0.00 0.00 3.53
3206 3889 9.511272 TCGTATATACTACTGCTCTTTTGGATA 57.489 33.333 11.05 0.00 0.00 2.59
3214 3897 9.740710 ACTACTGCTCTTTTGGATAAATTTAGT 57.259 29.630 3.94 0.00 0.00 2.24
3216 3899 8.635765 ACTGCTCTTTTGGATAAATTTAGTCA 57.364 30.769 3.94 2.12 0.00 3.41
3296 4365 3.461061 TCACTGAAGAACTCAACAGCAG 58.539 45.455 0.00 0.00 32.17 4.24
3298 4367 2.216046 CTGAAGAACTCAACAGCAGCA 58.784 47.619 0.00 0.00 32.17 4.41
3308 4377 0.684153 AACAGCAGCACAACCACCTT 60.684 50.000 0.00 0.00 0.00 3.50
3412 4485 1.002087 AGAGGTTAGACCAAAGCCACG 59.998 52.381 0.00 0.00 41.95 4.94
3443 4516 8.765517 AGATTCAGATTTGGGAGCAAATATTTT 58.234 29.630 0.00 0.00 35.18 1.82
3456 4529 8.929746 GGAGCAAATATTTTTCAGAAAAGAAGG 58.070 33.333 8.34 0.50 38.09 3.46
3516 4589 1.679153 GGAGGAAGACCAGATCGAGAC 59.321 57.143 0.00 0.00 38.94 3.36
3545 4624 0.663568 CAGCAGCAGCAGCAAGAAAC 60.664 55.000 12.92 0.00 45.49 2.78
3548 4627 1.698165 CAGCAGCAGCAAGAAACATG 58.302 50.000 3.17 0.00 45.49 3.21
3549 4628 0.601558 AGCAGCAGCAAGAAACATGG 59.398 50.000 3.17 0.00 45.49 3.66
3550 4629 1.012486 GCAGCAGCAAGAAACATGGC 61.012 55.000 0.00 0.00 41.58 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.914771 CTCCTTCTTCTCCATCTCCTCT 58.085 50.000 0.00 0.00 0.00 3.69
1 2 2.365293 GCTCCTTCTTCTCCATCTCCTC 59.635 54.545 0.00 0.00 0.00 3.71
3 4 2.114616 TGCTCCTTCTTCTCCATCTCC 58.885 52.381 0.00 0.00 0.00 3.71
5 6 3.324556 GCTATGCTCCTTCTTCTCCATCT 59.675 47.826 0.00 0.00 0.00 2.90
7 8 3.044156 TGCTATGCTCCTTCTTCTCCAT 58.956 45.455 0.00 0.00 0.00 3.41
8 9 2.470990 TGCTATGCTCCTTCTTCTCCA 58.529 47.619 0.00 0.00 0.00 3.86
9 10 3.767902 ATGCTATGCTCCTTCTTCTCC 57.232 47.619 0.00 0.00 0.00 3.71
11 12 3.969976 TGGTATGCTATGCTCCTTCTTCT 59.030 43.478 0.00 0.00 0.00 2.85
13 14 4.596643 AGATGGTATGCTATGCTCCTTCTT 59.403 41.667 0.00 0.00 31.66 2.52
14 15 4.020396 CAGATGGTATGCTATGCTCCTTCT 60.020 45.833 0.00 0.00 33.65 2.85
15 16 4.252073 CAGATGGTATGCTATGCTCCTTC 58.748 47.826 0.00 0.00 0.00 3.46
16 17 3.008813 CCAGATGGTATGCTATGCTCCTT 59.991 47.826 0.00 0.00 0.00 3.36
17 18 2.570752 CCAGATGGTATGCTATGCTCCT 59.429 50.000 0.00 0.00 0.00 3.69
18 19 2.568956 TCCAGATGGTATGCTATGCTCC 59.431 50.000 0.00 0.00 36.34 4.70
19 20 3.594134 GTCCAGATGGTATGCTATGCTC 58.406 50.000 0.00 0.00 36.34 4.26
20 21 2.028658 CGTCCAGATGGTATGCTATGCT 60.029 50.000 0.00 0.00 36.34 3.79
21 22 2.029020 TCGTCCAGATGGTATGCTATGC 60.029 50.000 0.00 0.00 36.34 3.14
22 23 3.942130 TCGTCCAGATGGTATGCTATG 57.058 47.619 0.00 0.00 36.34 2.23
33 34 3.550431 CGGGGCCATCGTCCAGAT 61.550 66.667 4.39 0.00 41.01 2.90
35 36 4.096003 AACGGGGCCATCGTCCAG 62.096 66.667 20.88 4.92 40.18 3.86
36 37 4.402528 CAACGGGGCCATCGTCCA 62.403 66.667 20.88 0.00 40.18 4.02
37 38 4.090588 TCAACGGGGCCATCGTCC 62.091 66.667 20.88 4.41 40.18 4.79
38 39 2.818274 GTCAACGGGGCCATCGTC 60.818 66.667 20.88 7.80 40.18 4.20
39 40 3.310860 GAGTCAACGGGGCCATCGT 62.311 63.158 16.14 16.14 43.14 3.73
40 41 2.511600 GAGTCAACGGGGCCATCG 60.512 66.667 14.89 14.89 0.00 3.84
41 42 2.124695 GGAGTCAACGGGGCCATC 60.125 66.667 4.39 0.00 0.00 3.51
42 43 2.610859 AGGAGTCAACGGGGCCAT 60.611 61.111 4.39 0.00 0.00 4.40
43 44 3.319198 GAGGAGTCAACGGGGCCA 61.319 66.667 4.39 0.00 0.00 5.36
44 45 4.097361 GGAGGAGTCAACGGGGCC 62.097 72.222 0.00 0.00 0.00 5.80
45 46 3.316573 CTGGAGGAGTCAACGGGGC 62.317 68.421 0.00 0.00 0.00 5.80
46 47 2.982130 CTGGAGGAGTCAACGGGG 59.018 66.667 0.00 0.00 0.00 5.73
47 48 2.266055 GCTGGAGGAGTCAACGGG 59.734 66.667 0.00 0.00 0.00 5.28
48 49 2.125912 CGCTGGAGGAGTCAACGG 60.126 66.667 0.00 0.00 0.00 4.44
49 50 1.153939 CTCGCTGGAGGAGTCAACG 60.154 63.158 0.00 0.00 36.61 4.10
50 51 0.389166 CACTCGCTGGAGGAGTCAAC 60.389 60.000 0.00 0.00 42.63 3.18
51 52 1.967535 CACTCGCTGGAGGAGTCAA 59.032 57.895 0.00 0.00 42.63 3.18
52 53 2.640302 GCACTCGCTGGAGGAGTCA 61.640 63.158 0.00 0.00 42.63 3.41
53 54 2.183046 GCACTCGCTGGAGGAGTC 59.817 66.667 0.00 0.00 42.63 3.36
63 64 1.664965 AAGTCAACGGAGCACTCGC 60.665 57.895 0.00 0.00 38.99 5.03
64 65 0.318699 TCAAGTCAACGGAGCACTCG 60.319 55.000 0.00 0.00 0.00 4.18
65 66 1.996191 GATCAAGTCAACGGAGCACTC 59.004 52.381 0.00 0.00 0.00 3.51
66 67 1.620819 AGATCAAGTCAACGGAGCACT 59.379 47.619 0.00 0.00 0.00 4.40
67 68 1.996191 GAGATCAAGTCAACGGAGCAC 59.004 52.381 0.00 0.00 0.00 4.40
68 69 1.066858 GGAGATCAAGTCAACGGAGCA 60.067 52.381 0.00 0.00 0.00 4.26
69 70 1.205893 AGGAGATCAAGTCAACGGAGC 59.794 52.381 0.00 0.00 0.00 4.70
70 71 3.257393 CAAGGAGATCAAGTCAACGGAG 58.743 50.000 0.00 0.00 0.00 4.63
71 72 2.028112 CCAAGGAGATCAAGTCAACGGA 60.028 50.000 0.00 0.00 0.00 4.69
72 73 2.289694 ACCAAGGAGATCAAGTCAACGG 60.290 50.000 0.00 0.00 0.00 4.44
73 74 3.045601 ACCAAGGAGATCAAGTCAACG 57.954 47.619 0.00 0.00 0.00 4.10
74 75 3.057946 GCAACCAAGGAGATCAAGTCAAC 60.058 47.826 0.00 0.00 0.00 3.18
75 76 3.149196 GCAACCAAGGAGATCAAGTCAA 58.851 45.455 0.00 0.00 0.00 3.18
76 77 2.106338 TGCAACCAAGGAGATCAAGTCA 59.894 45.455 0.00 0.00 0.00 3.41
77 78 2.783135 TGCAACCAAGGAGATCAAGTC 58.217 47.619 0.00 0.00 0.00 3.01
78 79 2.957402 TGCAACCAAGGAGATCAAGT 57.043 45.000 0.00 0.00 0.00 3.16
79 80 4.202141 TGTTTTGCAACCAAGGAGATCAAG 60.202 41.667 0.00 0.00 31.52 3.02
80 81 3.703556 TGTTTTGCAACCAAGGAGATCAA 59.296 39.130 0.00 0.00 31.52 2.57
81 82 3.068024 GTGTTTTGCAACCAAGGAGATCA 59.932 43.478 0.00 0.00 31.52 2.92
82 83 3.552890 GGTGTTTTGCAACCAAGGAGATC 60.553 47.826 0.00 0.00 31.52 2.75
83 84 2.365293 GGTGTTTTGCAACCAAGGAGAT 59.635 45.455 0.00 0.00 31.52 2.75
84 85 1.754226 GGTGTTTTGCAACCAAGGAGA 59.246 47.619 0.00 0.00 31.52 3.71
85 86 1.480137 TGGTGTTTTGCAACCAAGGAG 59.520 47.619 5.49 0.00 32.70 3.69
86 87 1.561643 TGGTGTTTTGCAACCAAGGA 58.438 45.000 5.49 0.00 32.70 3.36
87 88 2.482864 GATGGTGTTTTGCAACCAAGG 58.517 47.619 11.86 0.00 33.97 3.61
88 89 2.126467 CGATGGTGTTTTGCAACCAAG 58.874 47.619 11.86 6.01 33.97 3.61
89 90 1.478510 ACGATGGTGTTTTGCAACCAA 59.521 42.857 11.86 0.00 33.97 3.67
90 91 1.107114 ACGATGGTGTTTTGCAACCA 58.893 45.000 10.33 10.33 32.70 3.67
91 92 1.066303 TCACGATGGTGTTTTGCAACC 59.934 47.619 7.79 0.00 44.68 3.77
92 93 2.483583 TCACGATGGTGTTTTGCAAC 57.516 45.000 7.79 0.00 44.68 4.17
93 94 3.443037 CTTTCACGATGGTGTTTTGCAA 58.557 40.909 7.79 0.00 44.68 4.08
94 95 2.223688 CCTTTCACGATGGTGTTTTGCA 60.224 45.455 7.79 0.00 44.68 4.08
95 96 2.034053 TCCTTTCACGATGGTGTTTTGC 59.966 45.455 7.79 0.00 44.68 3.68
96 97 3.980646 TCCTTTCACGATGGTGTTTTG 57.019 42.857 7.79 0.00 44.68 2.44
97 98 4.642885 TCTTTCCTTTCACGATGGTGTTTT 59.357 37.500 7.79 0.00 44.68 2.43
98 99 4.204012 TCTTTCCTTTCACGATGGTGTTT 58.796 39.130 7.79 0.00 44.68 2.83
99 100 3.815809 TCTTTCCTTTCACGATGGTGTT 58.184 40.909 7.79 0.00 44.68 3.32
100 101 3.485463 TCTTTCCTTTCACGATGGTGT 57.515 42.857 7.79 0.00 44.68 4.16
101 102 4.787598 CTTTCTTTCCTTTCACGATGGTG 58.212 43.478 0.67 0.67 45.78 4.17
102 103 3.253432 GCTTTCTTTCCTTTCACGATGGT 59.747 43.478 0.00 0.00 0.00 3.55
103 104 3.366374 GGCTTTCTTTCCTTTCACGATGG 60.366 47.826 0.00 0.00 0.00 3.51
104 105 3.366374 GGGCTTTCTTTCCTTTCACGATG 60.366 47.826 0.00 0.00 0.00 3.84
105 106 2.820197 GGGCTTTCTTTCCTTTCACGAT 59.180 45.455 0.00 0.00 0.00 3.73
106 107 2.227194 GGGCTTTCTTTCCTTTCACGA 58.773 47.619 0.00 0.00 0.00 4.35
107 108 1.069227 CGGGCTTTCTTTCCTTTCACG 60.069 52.381 0.00 0.00 0.00 4.35
108 109 1.269723 CCGGGCTTTCTTTCCTTTCAC 59.730 52.381 0.00 0.00 0.00 3.18
109 110 1.616159 CCGGGCTTTCTTTCCTTTCA 58.384 50.000 0.00 0.00 0.00 2.69
110 111 0.888619 CCCGGGCTTTCTTTCCTTTC 59.111 55.000 8.08 0.00 0.00 2.62
111 112 0.541998 CCCCGGGCTTTCTTTCCTTT 60.542 55.000 17.73 0.00 0.00 3.11
112 113 1.076727 CCCCGGGCTTTCTTTCCTT 59.923 57.895 17.73 0.00 0.00 3.36
113 114 2.763902 CCCCGGGCTTTCTTTCCT 59.236 61.111 17.73 0.00 0.00 3.36
114 115 2.362503 CCCCCGGGCTTTCTTTCC 60.363 66.667 17.73 0.00 0.00 3.13
129 130 3.628646 ATTGCTCCACTCGCACCCC 62.629 63.158 0.00 0.00 37.07 4.95
130 131 2.045926 ATTGCTCCACTCGCACCC 60.046 61.111 0.00 0.00 37.07 4.61
131 132 1.364626 CTCATTGCTCCACTCGCACC 61.365 60.000 0.00 0.00 37.07 5.01
132 133 0.671781 ACTCATTGCTCCACTCGCAC 60.672 55.000 0.00 0.00 37.07 5.34
133 134 0.035317 AACTCATTGCTCCACTCGCA 59.965 50.000 0.00 0.00 35.22 5.10
134 135 0.445436 CAACTCATTGCTCCACTCGC 59.555 55.000 0.00 0.00 0.00 5.03
135 136 2.084610 TCAACTCATTGCTCCACTCG 57.915 50.000 0.00 0.00 35.63 4.18
136 137 3.668447 TCTTCAACTCATTGCTCCACTC 58.332 45.455 0.00 0.00 35.63 3.51
137 138 3.558746 CCTCTTCAACTCATTGCTCCACT 60.559 47.826 0.00 0.00 35.63 4.00
138 139 2.746362 CCTCTTCAACTCATTGCTCCAC 59.254 50.000 0.00 0.00 35.63 4.02
139 140 2.290514 CCCTCTTCAACTCATTGCTCCA 60.291 50.000 0.00 0.00 35.63 3.86
140 141 2.026822 TCCCTCTTCAACTCATTGCTCC 60.027 50.000 0.00 0.00 35.63 4.70
141 142 3.340814 TCCCTCTTCAACTCATTGCTC 57.659 47.619 0.00 0.00 35.63 4.26
142 143 3.795688 TTCCCTCTTCAACTCATTGCT 57.204 42.857 0.00 0.00 35.63 3.91
143 144 4.321527 CCTTTTCCCTCTTCAACTCATTGC 60.322 45.833 0.00 0.00 35.63 3.56
144 145 4.219288 CCCTTTTCCCTCTTCAACTCATTG 59.781 45.833 0.00 0.00 37.14 2.82
145 146 4.411013 CCCTTTTCCCTCTTCAACTCATT 58.589 43.478 0.00 0.00 0.00 2.57
146 147 3.815757 GCCCTTTTCCCTCTTCAACTCAT 60.816 47.826 0.00 0.00 0.00 2.90
147 148 2.489073 GCCCTTTTCCCTCTTCAACTCA 60.489 50.000 0.00 0.00 0.00 3.41
148 149 2.163509 GCCCTTTTCCCTCTTCAACTC 58.836 52.381 0.00 0.00 0.00 3.01
149 150 1.545651 CGCCCTTTTCCCTCTTCAACT 60.546 52.381 0.00 0.00 0.00 3.16
150 151 0.881796 CGCCCTTTTCCCTCTTCAAC 59.118 55.000 0.00 0.00 0.00 3.18
151 152 0.893727 GCGCCCTTTTCCCTCTTCAA 60.894 55.000 0.00 0.00 0.00 2.69
152 153 1.303317 GCGCCCTTTTCCCTCTTCA 60.303 57.895 0.00 0.00 0.00 3.02
153 154 0.893727 TTGCGCCCTTTTCCCTCTTC 60.894 55.000 4.18 0.00 0.00 2.87
154 155 0.469144 TTTGCGCCCTTTTCCCTCTT 60.469 50.000 4.18 0.00 0.00 2.85
155 156 0.895559 CTTTGCGCCCTTTTCCCTCT 60.896 55.000 4.18 0.00 0.00 3.69
156 157 0.893727 TCTTTGCGCCCTTTTCCCTC 60.894 55.000 4.18 0.00 0.00 4.30
157 158 0.895559 CTCTTTGCGCCCTTTTCCCT 60.896 55.000 4.18 0.00 0.00 4.20
158 159 0.893727 TCTCTTTGCGCCCTTTTCCC 60.894 55.000 4.18 0.00 0.00 3.97
159 160 0.523519 CTCTCTTTGCGCCCTTTTCC 59.476 55.000 4.18 0.00 0.00 3.13
160 161 0.109551 GCTCTCTTTGCGCCCTTTTC 60.110 55.000 4.18 0.00 0.00 2.29
161 162 0.538287 AGCTCTCTTTGCGCCCTTTT 60.538 50.000 4.18 0.00 35.28 2.27
162 163 1.073897 AGCTCTCTTTGCGCCCTTT 59.926 52.632 4.18 0.00 35.28 3.11
163 164 1.673665 CAGCTCTCTTTGCGCCCTT 60.674 57.895 4.18 0.00 35.28 3.95
164 165 2.046507 CAGCTCTCTTTGCGCCCT 60.047 61.111 4.18 0.00 35.28 5.19
165 166 3.130160 CCAGCTCTCTTTGCGCCC 61.130 66.667 4.18 0.00 35.28 6.13
166 167 2.359230 ACCAGCTCTCTTTGCGCC 60.359 61.111 4.18 0.00 35.28 6.53
167 168 2.684843 CCACCAGCTCTCTTTGCGC 61.685 63.158 0.00 0.00 35.28 6.09
168 169 1.004560 TCCACCAGCTCTCTTTGCG 60.005 57.895 0.00 0.00 35.28 4.85
169 170 1.294659 CGTCCACCAGCTCTCTTTGC 61.295 60.000 0.00 0.00 0.00 3.68
170 171 0.034059 ACGTCCACCAGCTCTCTTTG 59.966 55.000 0.00 0.00 0.00 2.77
171 172 0.034059 CACGTCCACCAGCTCTCTTT 59.966 55.000 0.00 0.00 0.00 2.52
172 173 0.827925 TCACGTCCACCAGCTCTCTT 60.828 55.000 0.00 0.00 0.00 2.85
173 174 1.228583 TCACGTCCACCAGCTCTCT 60.229 57.895 0.00 0.00 0.00 3.10
174 175 1.080434 GTCACGTCCACCAGCTCTC 60.080 63.158 0.00 0.00 0.00 3.20
175 176 2.920645 CGTCACGTCCACCAGCTCT 61.921 63.158 0.00 0.00 0.00 4.09
176 177 2.430921 CGTCACGTCCACCAGCTC 60.431 66.667 0.00 0.00 0.00 4.09
177 178 4.664677 GCGTCACGTCCACCAGCT 62.665 66.667 0.00 0.00 0.00 4.24
194 195 4.552365 AGTGATCATGCCCGCCCG 62.552 66.667 0.00 0.00 0.00 6.13
195 196 2.903855 CAGTGATCATGCCCGCCC 60.904 66.667 0.00 0.00 0.00 6.13
196 197 2.903855 CCAGTGATCATGCCCGCC 60.904 66.667 0.00 0.00 0.00 6.13
197 198 3.589881 GCCAGTGATCATGCCCGC 61.590 66.667 0.00 0.00 0.00 6.13
198 199 3.274586 CGCCAGTGATCATGCCCG 61.275 66.667 0.00 0.00 0.00 6.13
199 200 2.903855 CCGCCAGTGATCATGCCC 60.904 66.667 0.00 0.00 0.00 5.36
200 201 1.890979 CTCCGCCAGTGATCATGCC 60.891 63.158 0.00 0.00 0.00 4.40
201 202 0.745845 AACTCCGCCAGTGATCATGC 60.746 55.000 0.00 1.52 34.56 4.06
202 203 1.742761 AAACTCCGCCAGTGATCATG 58.257 50.000 0.00 0.00 34.56 3.07
203 204 2.501723 ACTAAACTCCGCCAGTGATCAT 59.498 45.455 0.00 0.00 34.56 2.45
204 205 1.899814 ACTAAACTCCGCCAGTGATCA 59.100 47.619 0.00 0.00 34.56 2.92
205 206 2.271800 CACTAAACTCCGCCAGTGATC 58.728 52.381 0.00 0.00 40.67 2.92
206 207 1.676014 GCACTAAACTCCGCCAGTGAT 60.676 52.381 4.83 0.00 40.67 3.06
207 208 0.320421 GCACTAAACTCCGCCAGTGA 60.320 55.000 4.83 0.00 40.67 3.41
208 209 0.602638 TGCACTAAACTCCGCCAGTG 60.603 55.000 0.00 0.00 41.06 3.66
209 210 0.107831 TTGCACTAAACTCCGCCAGT 59.892 50.000 0.00 0.00 36.64 4.00
210 211 0.798776 CTTGCACTAAACTCCGCCAG 59.201 55.000 0.00 0.00 0.00 4.85
211 212 1.234615 GCTTGCACTAAACTCCGCCA 61.235 55.000 0.00 0.00 0.00 5.69
212 213 1.234615 TGCTTGCACTAAACTCCGCC 61.235 55.000 0.00 0.00 0.00 6.13
213 214 0.591170 TTGCTTGCACTAAACTCCGC 59.409 50.000 0.00 0.00 0.00 5.54
214 215 3.042887 GTTTTGCTTGCACTAAACTCCG 58.957 45.455 12.80 0.00 34.03 4.63
215 216 4.044426 CAGTTTTGCTTGCACTAAACTCC 58.956 43.478 17.38 0.00 41.52 3.85
216 217 4.044426 CCAGTTTTGCTTGCACTAAACTC 58.956 43.478 17.38 0.00 41.52 3.01
217 218 3.181476 CCCAGTTTTGCTTGCACTAAACT 60.181 43.478 15.51 15.51 43.30 2.66
218 219 3.123050 CCCAGTTTTGCTTGCACTAAAC 58.877 45.455 12.38 12.38 36.10 2.01
219 220 2.482839 GCCCAGTTTTGCTTGCACTAAA 60.483 45.455 0.00 0.00 0.00 1.85
220 221 1.068434 GCCCAGTTTTGCTTGCACTAA 59.932 47.619 0.00 0.00 0.00 2.24
221 222 0.673437 GCCCAGTTTTGCTTGCACTA 59.327 50.000 0.00 0.00 0.00 2.74
222 223 1.442987 GCCCAGTTTTGCTTGCACT 59.557 52.632 0.00 0.00 0.00 4.40
223 224 1.950630 CGCCCAGTTTTGCTTGCAC 60.951 57.895 0.00 0.00 0.00 4.57
224 225 2.416678 CGCCCAGTTTTGCTTGCA 59.583 55.556 0.00 0.00 0.00 4.08
225 226 2.356194 CCGCCCAGTTTTGCTTGC 60.356 61.111 0.00 0.00 0.00 4.01
226 227 2.339712 CCCGCCCAGTTTTGCTTG 59.660 61.111 0.00 0.00 0.00 4.01
227 228 2.917227 CCCCGCCCAGTTTTGCTT 60.917 61.111 0.00 0.00 0.00 3.91
228 229 4.994756 CCCCCGCCCAGTTTTGCT 62.995 66.667 0.00 0.00 0.00 3.91
244 245 3.705289 AGCAAAATTGGGCGGGCC 61.705 61.111 14.65 14.65 34.54 5.80
245 246 2.434709 CAGCAAAATTGGGCGGGC 60.435 61.111 0.00 0.00 34.54 6.13
246 247 2.434709 GCAGCAAAATTGGGCGGG 60.435 61.111 4.43 0.00 34.54 6.13
247 248 0.883814 TTTGCAGCAAAATTGGGCGG 60.884 50.000 18.52 0.00 29.89 6.13
248 249 0.235404 GTTTGCAGCAAAATTGGGCG 59.765 50.000 22.26 0.00 35.03 6.13
249 250 0.592637 GGTTTGCAGCAAAATTGGGC 59.407 50.000 22.26 8.61 35.03 5.36
250 251 1.964552 TGGTTTGCAGCAAAATTGGG 58.035 45.000 22.26 0.00 35.03 4.12
251 252 3.304794 CCATTGGTTTGCAGCAAAATTGG 60.305 43.478 22.26 19.69 43.52 3.16
252 253 3.304794 CCCATTGGTTTGCAGCAAAATTG 60.305 43.478 22.26 15.47 43.52 2.32
253 254 2.885894 CCCATTGGTTTGCAGCAAAATT 59.114 40.909 22.26 4.87 43.52 1.82
254 255 2.506444 CCCATTGGTTTGCAGCAAAAT 58.494 42.857 22.26 9.77 43.52 1.82
255 256 1.964552 CCCATTGGTTTGCAGCAAAA 58.035 45.000 22.26 7.68 43.52 2.44
256 257 0.534652 GCCCATTGGTTTGCAGCAAA 60.535 50.000 16.93 16.93 43.52 3.68
257 258 1.071128 GCCCATTGGTTTGCAGCAA 59.929 52.632 2.83 2.83 44.40 3.91
258 259 2.742403 GCCCATTGGTTTGCAGCA 59.258 55.556 1.20 0.00 0.00 4.41
259 260 2.046988 GGCCCATTGGTTTGCAGC 60.047 61.111 1.20 0.00 0.00 5.25
260 261 0.397564 AAAGGCCCATTGGTTTGCAG 59.602 50.000 0.00 0.00 0.00 4.41
261 262 1.622811 CTAAAGGCCCATTGGTTTGCA 59.377 47.619 0.00 0.00 0.00 4.08
262 263 1.066215 CCTAAAGGCCCATTGGTTTGC 60.066 52.381 0.00 0.00 0.00 3.68
275 276 1.114627 GGCCCATTTCTGCCTAAAGG 58.885 55.000 0.00 0.00 44.46 3.11
282 283 1.143684 TCCTCTATGGCCCATTTCTGC 59.856 52.381 0.00 0.00 35.26 4.26
283 284 3.582998 TTCCTCTATGGCCCATTTCTG 57.417 47.619 0.00 0.00 35.26 3.02
284 285 4.608170 TTTTCCTCTATGGCCCATTTCT 57.392 40.909 0.00 0.00 35.26 2.52
318 319 1.443828 GGCGGGCCAGTTTGAAAAA 59.556 52.632 4.39 0.00 35.81 1.94
319 320 2.503382 GGGCGGGCCAGTTTGAAAA 61.503 57.895 16.76 0.00 37.98 2.29
320 321 2.915137 GGGCGGGCCAGTTTGAAA 60.915 61.111 16.76 0.00 37.98 2.69
321 322 4.211330 TGGGCGGGCCAGTTTGAA 62.211 61.111 20.63 0.00 37.98 2.69
322 323 4.659172 CTGGGCGGGCCAGTTTGA 62.659 66.667 35.27 9.03 37.98 2.69
323 324 4.974721 ACTGGGCGGGCCAGTTTG 62.975 66.667 40.94 24.54 44.89 2.93
324 325 4.660938 GACTGGGCGGGCCAGTTT 62.661 66.667 44.20 29.96 46.81 2.66
327 328 4.431131 AATGACTGGGCGGGCCAG 62.431 66.667 39.67 39.67 40.72 4.85
328 329 4.424711 GAATGACTGGGCGGGCCA 62.425 66.667 22.99 22.99 37.98 5.36
329 330 4.115199 AGAATGACTGGGCGGGCC 62.115 66.667 14.65 14.65 0.00 5.80
330 331 2.825836 CAGAATGACTGGGCGGGC 60.826 66.667 0.00 0.00 42.39 6.13
331 332 2.989639 TCAGAATGACTGGGCGGG 59.010 61.111 0.00 0.00 42.56 6.13
354 355 2.963854 CATGCGGCAGTAGCGGAG 60.964 66.667 9.25 0.00 43.11 4.63
355 356 4.529219 CCATGCGGCAGTAGCGGA 62.529 66.667 9.25 0.00 43.11 5.54
356 357 3.439513 TACCATGCGGCAGTAGCGG 62.440 63.158 9.25 6.25 43.41 5.52
357 358 2.106131 TACCATGCGGCAGTAGCG 59.894 61.111 9.25 0.00 43.41 4.26
358 359 2.237751 CGTACCATGCGGCAGTAGC 61.238 63.158 9.25 1.34 41.10 3.58
359 360 1.591594 CCGTACCATGCGGCAGTAG 60.592 63.158 9.25 1.80 42.82 2.57
360 361 2.497293 CCGTACCATGCGGCAGTA 59.503 61.111 9.25 3.25 42.82 2.74
366 367 1.299926 GGTCTAGCCGTACCATGCG 60.300 63.158 0.00 0.00 35.73 4.73
367 368 0.249489 CTGGTCTAGCCGTACCATGC 60.249 60.000 1.73 0.00 44.56 4.06
368 369 0.389391 CCTGGTCTAGCCGTACCATG 59.611 60.000 1.73 0.00 44.56 3.66
369 370 0.032416 ACCTGGTCTAGCCGTACCAT 60.032 55.000 1.73 0.00 44.56 3.55
370 371 0.968901 CACCTGGTCTAGCCGTACCA 60.969 60.000 0.00 1.42 43.47 3.25
371 372 1.814527 CACCTGGTCTAGCCGTACC 59.185 63.158 0.00 0.00 41.21 3.34
372 373 1.141234 GCACCTGGTCTAGCCGTAC 59.859 63.158 0.00 0.00 41.21 3.67
373 374 2.412323 CGCACCTGGTCTAGCCGTA 61.412 63.158 0.00 0.00 41.21 4.02
374 375 3.760035 CGCACCTGGTCTAGCCGT 61.760 66.667 0.00 0.00 41.21 5.68
376 377 4.082523 TGCGCACCTGGTCTAGCC 62.083 66.667 5.66 3.31 37.90 3.93
377 378 2.510238 CTGCGCACCTGGTCTAGC 60.510 66.667 5.66 3.42 0.00 3.42
378 379 1.667154 TAGCTGCGCACCTGGTCTAG 61.667 60.000 15.49 0.00 0.00 2.43
379 380 1.667154 CTAGCTGCGCACCTGGTCTA 61.667 60.000 15.49 6.86 0.00 2.59
380 381 2.997315 TAGCTGCGCACCTGGTCT 60.997 61.111 15.49 6.10 0.00 3.85
381 382 2.510238 CTAGCTGCGCACCTGGTC 60.510 66.667 15.49 0.00 0.00 4.02
382 383 3.314331 ACTAGCTGCGCACCTGGT 61.314 61.111 15.20 15.20 0.00 4.00
383 384 2.816958 CACTAGCTGCGCACCTGG 60.817 66.667 15.49 14.65 0.00 4.45
384 385 3.494336 GCACTAGCTGCGCACCTG 61.494 66.667 15.49 2.85 35.72 4.00
392 393 2.393768 CCAGTTGCCGCACTAGCTG 61.394 63.158 0.00 0.00 39.10 4.24
393 394 2.046892 CCAGTTGCCGCACTAGCT 60.047 61.111 0.00 0.00 39.10 3.32
394 395 1.515521 AAACCAGTTGCCGCACTAGC 61.516 55.000 0.00 0.00 37.42 3.42
395 396 0.951558 AAAACCAGTTGCCGCACTAG 59.048 50.000 0.00 0.00 0.00 2.57
396 397 0.665835 CAAAACCAGTTGCCGCACTA 59.334 50.000 0.00 0.00 0.00 2.74
397 398 1.319614 ACAAAACCAGTTGCCGCACT 61.320 50.000 0.00 0.00 31.29 4.40
398 399 0.869880 GACAAAACCAGTTGCCGCAC 60.870 55.000 0.00 0.00 31.29 5.34
399 400 1.435515 GACAAAACCAGTTGCCGCA 59.564 52.632 0.00 0.00 31.29 5.69
400 401 1.299850 GGACAAAACCAGTTGCCGC 60.300 57.895 0.00 0.00 31.29 6.53
401 402 1.008995 CGGACAAAACCAGTTGCCG 60.009 57.895 0.00 0.00 39.76 5.69
402 403 1.362355 CCGGACAAAACCAGTTGCC 59.638 57.895 0.00 0.00 31.29 4.52
403 404 1.362355 CCCGGACAAAACCAGTTGC 59.638 57.895 0.73 0.00 31.29 4.17
404 405 0.666374 GACCCGGACAAAACCAGTTG 59.334 55.000 0.73 0.00 34.52 3.16
405 406 0.816421 CGACCCGGACAAAACCAGTT 60.816 55.000 0.73 0.00 0.00 3.16
406 407 1.227734 CGACCCGGACAAAACCAGT 60.228 57.895 0.73 0.00 0.00 4.00
407 408 3.650369 CGACCCGGACAAAACCAG 58.350 61.111 0.73 0.00 0.00 4.00
418 419 1.817941 CTGGTTAATGGCCGACCCG 60.818 63.158 12.99 5.09 35.87 5.28
419 420 0.323087 AACTGGTTAATGGCCGACCC 60.323 55.000 12.99 3.00 33.59 4.46
420 421 1.092348 GAACTGGTTAATGGCCGACC 58.908 55.000 0.00 4.25 0.00 4.79
421 422 0.725117 CGAACTGGTTAATGGCCGAC 59.275 55.000 0.00 0.00 0.00 4.79
422 423 0.609151 TCGAACTGGTTAATGGCCGA 59.391 50.000 0.00 0.00 0.00 5.54
423 424 0.725117 GTCGAACTGGTTAATGGCCG 59.275 55.000 0.00 0.00 0.00 6.13
424 425 2.007608 GAGTCGAACTGGTTAATGGCC 58.992 52.381 0.00 0.00 0.00 5.36
425 426 2.007608 GGAGTCGAACTGGTTAATGGC 58.992 52.381 0.00 0.00 0.00 4.40
426 427 3.328382 TGGAGTCGAACTGGTTAATGG 57.672 47.619 0.00 0.00 0.00 3.16
427 428 5.682943 TTTTGGAGTCGAACTGGTTAATG 57.317 39.130 0.00 0.00 0.00 1.90
451 452 4.506886 TTGTGTTGTTTTCGACCTGTTT 57.493 36.364 0.00 0.00 33.46 2.83
456 457 3.553917 CCCATTTTGTGTTGTTTTCGACC 59.446 43.478 0.00 0.00 33.46 4.79
457 458 3.553917 CCCCATTTTGTGTTGTTTTCGAC 59.446 43.478 0.00 0.00 34.91 4.20
484 485 3.125487 CACATTTTACACCGATACCGCAA 59.875 43.478 0.00 0.00 0.00 4.85
493 494 3.634568 TTCTTGCCACATTTTACACCG 57.365 42.857 0.00 0.00 0.00 4.94
597 598 3.281158 TGATCCACGAATCATGCAATGT 58.719 40.909 0.00 0.00 46.80 2.71
649 689 3.270027 TCGACGATCTTGGCATTCATTT 58.730 40.909 0.00 0.00 0.00 2.32
650 690 2.905075 TCGACGATCTTGGCATTCATT 58.095 42.857 0.00 0.00 0.00 2.57
651 691 2.602257 TCGACGATCTTGGCATTCAT 57.398 45.000 0.00 0.00 0.00 2.57
672 713 2.310577 GCGATCTGTTTGACTTTGTGC 58.689 47.619 0.00 0.00 0.00 4.57
673 714 2.662791 CGGCGATCTGTTTGACTTTGTG 60.663 50.000 0.00 0.00 0.00 3.33
712 753 1.402456 GCTGGTACACTACACGGTCAG 60.402 57.143 0.00 0.00 0.00 3.51
719 760 1.320507 TCACGTGCTGGTACACTACA 58.679 50.000 11.67 0.00 38.45 2.74
720 761 2.649331 ATCACGTGCTGGTACACTAC 57.351 50.000 11.67 0.00 38.45 2.73
721 762 2.559231 TGAATCACGTGCTGGTACACTA 59.441 45.455 11.67 0.00 38.45 2.74
722 763 1.343142 TGAATCACGTGCTGGTACACT 59.657 47.619 11.67 0.00 38.45 3.55
723 764 1.726791 CTGAATCACGTGCTGGTACAC 59.273 52.381 11.67 0.00 37.19 2.90
788 838 3.917760 GATCTGCGGGAGGGGTCG 61.918 72.222 0.00 0.00 0.00 4.79
1166 1285 3.531207 CGGAGATGGCTCTGGCGA 61.531 66.667 0.00 0.00 42.66 5.54
1366 1515 1.850345 ACAGAGGAAGTGGGGACAAAA 59.150 47.619 0.00 0.00 46.06 2.44
1370 1519 0.321996 GTGACAGAGGAAGTGGGGAC 59.678 60.000 0.00 0.00 0.00 4.46
1373 1523 1.001406 GACAGTGACAGAGGAAGTGGG 59.999 57.143 0.00 0.00 0.00 4.61
1374 1524 1.688735 TGACAGTGACAGAGGAAGTGG 59.311 52.381 0.00 0.00 0.00 4.00
1376 1526 2.363680 CTGTGACAGTGACAGAGGAAGT 59.636 50.000 14.59 0.00 43.04 3.01
1378 1528 2.388735 ACTGTGACAGTGACAGAGGAA 58.611 47.619 25.11 0.00 43.63 3.36
1382 1532 3.288092 AGTGTACTGTGACAGTGACAGA 58.712 45.455 27.18 4.68 45.01 3.41
1383 1533 3.316588 AGAGTGTACTGTGACAGTGACAG 59.683 47.826 27.18 17.75 45.01 3.51
1390 1552 6.403309 CGAATTAGCTAGAGTGTACTGTGACA 60.403 42.308 0.00 0.00 0.00 3.58
1576 2076 1.372997 GCAGTTCTCGTCCTCGCAA 60.373 57.895 0.00 0.00 36.96 4.85
1842 2342 3.119316 AGTTCAGATACAGAACCAGAGCG 60.119 47.826 0.00 0.00 44.91 5.03
1845 2345 6.419484 TTTCAGTTCAGATACAGAACCAGA 57.581 37.500 0.00 0.00 44.91 3.86
1855 2355 9.212641 CTGTCAGAGAAAATTTCAGTTCAGATA 57.787 33.333 8.55 0.00 0.00 1.98
1878 2378 2.345244 CCAGCAGAGTTCGCCTGT 59.655 61.111 0.00 0.00 34.29 4.00
1887 2388 7.094634 ACACTCAAAATATAAACACCAGCAGAG 60.095 37.037 0.00 0.00 0.00 3.35
1909 2421 1.202758 TCGCCACCTGAAAATGACACT 60.203 47.619 0.00 0.00 0.00 3.55
2042 2610 7.798596 ATGACACATTCAGCTTAAGATTAGG 57.201 36.000 6.67 0.00 37.77 2.69
2077 2645 1.669999 GCCCCCAATGCTGACATGAC 61.670 60.000 0.00 0.00 36.36 3.06
2093 2668 4.344865 TGGTTCTCGCCCAAGCCC 62.345 66.667 0.00 0.00 34.57 5.19
2177 2752 1.226323 CTCGTAGGTCTTGACGCGG 60.226 63.158 12.47 0.00 38.93 6.46
2234 2811 1.234615 ACACGGCCATTCTTGGTTCG 61.235 55.000 2.24 7.83 45.57 3.95
2262 2839 6.042143 ACCAAGAACATCACACAAAAATGTC 58.958 36.000 0.00 0.00 32.63 3.06
2271 2859 2.479837 TGACGACCAAGAACATCACAC 58.520 47.619 0.00 0.00 0.00 3.82
2288 2876 2.456119 CGCAGCCGTCCTGAATGAC 61.456 63.158 4.68 0.00 44.64 3.06
2447 3067 0.108804 AACGCGTCATCGGATTCAGT 60.109 50.000 14.44 0.00 37.56 3.41
2461 3081 2.027073 TGCTAGGCAGTGAAACGCG 61.027 57.895 3.53 3.53 45.86 6.01
2496 3138 6.207417 CCACAATACCAAACAAGTTCAGAGAT 59.793 38.462 0.00 0.00 0.00 2.75
2514 3156 0.687920 TCCCGTTCTGCACCACAATA 59.312 50.000 0.00 0.00 0.00 1.90
2828 3487 8.043710 ACTACAAGATCAAATTCTAGGAACAGG 58.956 37.037 0.00 0.00 0.00 4.00
2955 3626 8.771920 TCGTGGATATTATCATATTGTTGTCC 57.228 34.615 6.04 0.00 0.00 4.02
2956 3627 9.424319 ACTCGTGGATATTATCATATTGTTGTC 57.576 33.333 6.04 0.00 0.00 3.18
3025 3708 4.293662 TGTACACTTATTGGTGGATGCA 57.706 40.909 0.00 0.00 41.09 3.96
3026 3709 5.835113 AATGTACACTTATTGGTGGATGC 57.165 39.130 0.00 0.00 41.09 3.91
3027 3710 7.283127 AGCTAAATGTACACTTATTGGTGGATG 59.717 37.037 0.00 0.00 41.09 3.51
3028 3711 7.346471 AGCTAAATGTACACTTATTGGTGGAT 58.654 34.615 0.00 0.00 41.09 3.41
3031 3714 9.128107 CAAAAGCTAAATGTACACTTATTGGTG 57.872 33.333 0.00 0.00 42.34 4.17
3032 3715 8.856103 ACAAAAGCTAAATGTACACTTATTGGT 58.144 29.630 0.00 0.00 0.00 3.67
3034 3717 9.341899 GGACAAAAGCTAAATGTACACTTATTG 57.658 33.333 0.00 2.23 0.00 1.90
3040 3723 7.623268 CTTTGGACAAAAGCTAAATGTACAC 57.377 36.000 10.07 1.43 37.62 2.90
3103 3786 5.499139 TTTAGTGCCATAAATGCTGCTAC 57.501 39.130 0.00 0.00 0.00 3.58
3104 3787 6.713762 AATTTAGTGCCATAAATGCTGCTA 57.286 33.333 0.00 0.00 35.91 3.49
3133 3816 9.665719 AAACTACATTTCAAAACAAATCCAGTT 57.334 25.926 0.00 0.00 32.82 3.16
3190 3873 9.733556 TGACTAAATTTATCCAAAAGAGCAGTA 57.266 29.630 0.00 0.00 0.00 2.74
3192 3875 9.912634 TTTGACTAAATTTATCCAAAAGAGCAG 57.087 29.630 16.34 0.44 0.00 4.24
3308 4377 1.300620 CTCCGTGTCACTTTCCGCA 60.301 57.895 0.65 0.00 0.00 5.69
3412 4485 2.686915 CTCCCAAATCTGAATCTGGTGC 59.313 50.000 3.34 0.00 0.00 5.01
3443 4516 6.429385 GCTCTGAATTCTCCTTCTTTTCTGAA 59.571 38.462 7.05 0.00 0.00 3.02
3456 4529 2.288458 GCATCTGCAGCTCTGAATTCTC 59.712 50.000 9.47 0.00 41.59 2.87
3489 4562 2.977808 TCTGGTCTTCCTCCTTCAAGT 58.022 47.619 0.00 0.00 34.23 3.16
3516 4589 2.007549 CTGCTGCTGCTCAATCTCG 58.992 57.895 17.00 0.00 40.48 4.04
3541 4620 2.373735 CGACATCATCGCCATGTTTC 57.626 50.000 0.00 0.00 45.52 2.78
3728 4813 2.861006 GCGAACTCCTTGGCGTTC 59.139 61.111 11.31 11.31 36.92 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.