Multiple sequence alignment - TraesCS1A01G364800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G364800 chr1A 100.000 4472 0 0 1 4472 544388416 544392887 0.000000e+00 8259.0
1 TraesCS1A01G364800 chr1A 96.581 117 4 0 2844 2960 376145834 376145950 1.270000e-45 195.0
2 TraesCS1A01G364800 chr1A 96.703 91 3 0 294 384 551465799 551465709 7.750000e-33 152.0
3 TraesCS1A01G364800 chr1A 81.437 167 29 2 1839 2004 544487895 544488060 7.800000e-28 135.0
4 TraesCS1A01G364800 chr1A 91.954 87 5 2 1083 1168 544487077 544487162 2.180000e-23 121.0
5 TraesCS1A01G364800 chr1A 100.000 31 0 0 3077 3107 502805192 502805162 1.740000e-04 58.4
6 TraesCS1A01G364800 chr1B 88.226 2497 140 70 379 2812 614499311 614501716 0.000000e+00 2841.0
7 TraesCS1A01G364800 chr1B 84.424 886 72 21 3605 4472 614502271 614503108 0.000000e+00 811.0
8 TraesCS1A01G364800 chr1B 86.376 734 67 11 3742 4472 614507495 614508198 0.000000e+00 771.0
9 TraesCS1A01G364800 chr1B 85.566 769 55 31 2985 3740 614506660 614507385 0.000000e+00 754.0
10 TraesCS1A01G364800 chr1B 86.257 553 39 17 2989 3538 614501728 614502246 2.330000e-157 566.0
11 TraesCS1A01G364800 chr1B 93.431 137 9 0 2640 2776 614505636 614505772 2.110000e-48 204.0
12 TraesCS1A01G364800 chr1B 89.630 135 11 2 168 302 614499127 614499258 7.690000e-38 169.0
13 TraesCS1A01G364800 chr1B 94.000 100 4 2 293 390 686756519 686756420 2.790000e-32 150.0
14 TraesCS1A01G364800 chr1B 90.654 107 8 2 281 386 503353001 503352896 1.680000e-29 141.0
15 TraesCS1A01G364800 chr1B 78.140 215 45 2 1839 2052 614943484 614943697 7.800000e-28 135.0
16 TraesCS1A01G364800 chr1B 92.857 84 5 1 1085 1168 614942675 614942757 2.180000e-23 121.0
17 TraesCS1A01G364800 chr1B 94.737 38 0 1 3077 3112 547523424 547523387 1.740000e-04 58.4
18 TraesCS1A01G364800 chr1D 89.437 2272 109 43 585 2814 448786373 448788555 0.000000e+00 2745.0
19 TraesCS1A01G364800 chr1D 85.724 1548 122 45 2962 4472 448788554 448790039 0.000000e+00 1543.0
20 TraesCS1A01G364800 chr1D 89.866 1194 53 27 585 1747 448754235 448755391 0.000000e+00 1472.0
21 TraesCS1A01G364800 chr1D 92.748 524 36 2 3951 4472 448792352 448792875 0.000000e+00 756.0
22 TraesCS1A01G364800 chr1D 94.828 290 13 2 4185 4472 448755389 448755678 6.820000e-123 451.0
23 TraesCS1A01G364800 chr1D 78.241 216 45 2 1838 2052 449282698 449282912 2.170000e-28 137.0
24 TraesCS1A01G364800 chr1D 94.048 84 4 1 1085 1168 449281872 449281954 4.700000e-25 126.0
25 TraesCS1A01G364800 chr1D 100.000 31 0 0 3077 3107 407160379 407160349 1.740000e-04 58.4
26 TraesCS1A01G364800 chr3D 97.414 116 2 1 2850 2965 433565992 433566106 3.530000e-46 196.0
27 TraesCS1A01G364800 chr3D 90.385 52 4 1 4211 4261 532172001 532172052 2.890000e-07 67.6
28 TraesCS1A01G364800 chr4A 97.321 112 3 0 2849 2960 528813883 528813994 1.640000e-44 191.0
29 TraesCS1A01G364800 chr4A 93.496 123 7 1 2850 2972 281354303 281354424 9.880000e-42 182.0
30 TraesCS1A01G364800 chr4A 95.238 42 2 0 1965 2006 538840138 538840097 2.890000e-07 67.6
31 TraesCS1A01G364800 chr5D 98.148 108 2 0 2853 2960 424123549 424123656 5.910000e-44 189.0
32 TraesCS1A01G364800 chr5D 92.913 127 7 2 2840 2965 560426070 560426195 2.750000e-42 183.0
33 TraesCS1A01G364800 chr5A 89.404 151 10 6 2849 2995 69844898 69844750 7.640000e-43 185.0
34 TraesCS1A01G364800 chr6D 92.366 131 6 4 2832 2959 468641022 468640893 2.750000e-42 183.0
35 TraesCS1A01G364800 chr7D 91.603 131 7 4 2832 2959 414289181 414289310 1.280000e-40 178.0
36 TraesCS1A01G364800 chr7D 89.091 55 5 1 4211 4264 46993653 46993599 2.890000e-07 67.6
37 TraesCS1A01G364800 chr7D 94.444 36 2 0 1966 2001 513312802 513312837 6.250000e-04 56.5
38 TraesCS1A01G364800 chr7D 86.275 51 7 0 1966 2016 515220643 515220593 6.250000e-04 56.5
39 TraesCS1A01G364800 chr7D 86.275 51 7 0 1966 2016 515236849 515236799 6.250000e-04 56.5
40 TraesCS1A01G364800 chr4D 94.495 109 4 2 280 387 478669028 478668921 2.770000e-37 167.0
41 TraesCS1A01G364800 chr5B 97.778 90 2 0 289 378 600647492 600647581 5.990000e-34 156.0
42 TraesCS1A01G364800 chr2A 97.753 89 2 0 292 380 196345032 196345120 2.150000e-33 154.0
43 TraesCS1A01G364800 chr7A 95.699 93 4 0 293 385 705090326 705090234 2.790000e-32 150.0
44 TraesCS1A01G364800 chr7A 90.385 52 4 1 4211 4261 200512562 200512511 2.890000e-07 67.6
45 TraesCS1A01G364800 chr3B 92.233 103 8 0 284 386 549759058 549759160 3.600000e-31 147.0
46 TraesCS1A01G364800 chr2D 93.000 100 7 0 289 388 270480956 270480857 3.600000e-31 147.0
47 TraesCS1A01G364800 chr2D 84.507 71 9 2 4220 4289 207252557 207252488 8.030000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G364800 chr1A 544388416 544392887 4471 False 8259.000000 8259 100.000000 1 4472 1 chr1A.!!$F2 4471
1 TraesCS1A01G364800 chr1B 614499127 614508198 9071 False 873.714286 2841 87.701429 168 4472 7 chr1B.!!$F1 4304
2 TraesCS1A01G364800 chr1D 448786373 448792875 6502 False 1681.333333 2745 89.303000 585 4472 3 chr1D.!!$F2 3887
3 TraesCS1A01G364800 chr1D 448754235 448755678 1443 False 961.500000 1472 92.347000 585 4472 2 chr1D.!!$F1 3887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.307760 CGGCATTTCGGTTGATAGGC 59.692 55.0 0.00 0.00 33.02 3.93 F
1399 1456 0.108804 GCTCAAGCTGCTGGTACGTA 60.109 55.0 1.35 0.00 38.21 3.57 F
1788 1857 0.248134 CGACGACCTGAATCTCGGTC 60.248 60.0 10.75 10.75 44.88 4.79 F
2402 2529 0.039798 ACGCTTCATTTGCAGCACAG 60.040 50.0 0.00 0.00 33.92 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 1838 0.248134 GACCGAGATTCAGGTCGTCG 60.248 60.0 13.25 0.82 46.08 5.12 R
2267 2375 0.393077 ATTCTTCGTATCCCGGCCTG 59.607 55.0 0.00 0.00 37.11 4.85 R
2943 3076 0.744414 TACGTACTCCCTCCGTTCCG 60.744 60.0 0.00 0.00 36.12 4.30 R
3825 3989 1.455383 CCACCCTTGCGCAAAGAAGT 61.455 55.0 25.01 15.27 38.24 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.032952 AGGTGCGTAAAATACTTAGTTTAACC 57.967 34.615 0.00 2.43 30.36 2.85
36 37 7.119699 AGGTGCGTAAAATACTTAGTTTAACCC 59.880 37.037 0.00 0.00 30.45 4.11
37 38 7.094848 GGTGCGTAAAATACTTAGTTTAACCCA 60.095 37.037 0.00 0.00 29.11 4.51
38 39 8.288913 GTGCGTAAAATACTTAGTTTAACCCAA 58.711 33.333 0.00 0.00 29.11 4.12
39 40 8.505625 TGCGTAAAATACTTAGTTTAACCCAAG 58.494 33.333 0.00 5.76 29.11 3.61
40 41 8.720562 GCGTAAAATACTTAGTTTAACCCAAGA 58.279 33.333 12.17 0.38 29.11 3.02
46 47 9.730705 AATACTTAGTTTAACCCAAGACTTACC 57.269 33.333 12.17 0.00 0.00 2.85
47 48 6.537355 ACTTAGTTTAACCCAAGACTTACCC 58.463 40.000 12.17 0.00 0.00 3.69
48 49 4.377762 AGTTTAACCCAAGACTTACCCC 57.622 45.455 0.00 0.00 0.00 4.95
49 50 3.723154 AGTTTAACCCAAGACTTACCCCA 59.277 43.478 0.00 0.00 0.00 4.96
50 51 4.168479 AGTTTAACCCAAGACTTACCCCAA 59.832 41.667 0.00 0.00 0.00 4.12
51 52 2.971901 AACCCAAGACTTACCCCAAG 57.028 50.000 0.00 0.00 40.38 3.61
52 53 2.127651 ACCCAAGACTTACCCCAAGA 57.872 50.000 0.00 0.00 37.71 3.02
53 54 1.985895 ACCCAAGACTTACCCCAAGAG 59.014 52.381 0.00 0.00 37.71 2.85
54 55 1.340114 CCCAAGACTTACCCCAAGAGC 60.340 57.143 0.00 0.00 37.71 4.09
55 56 1.351017 CCAAGACTTACCCCAAGAGCA 59.649 52.381 0.00 0.00 37.71 4.26
56 57 2.224769 CCAAGACTTACCCCAAGAGCAA 60.225 50.000 0.00 0.00 37.71 3.91
57 58 2.814336 CAAGACTTACCCCAAGAGCAAC 59.186 50.000 0.00 0.00 37.71 4.17
58 59 2.054799 AGACTTACCCCAAGAGCAACA 58.945 47.619 0.00 0.00 37.71 3.33
59 60 2.441750 AGACTTACCCCAAGAGCAACAA 59.558 45.455 0.00 0.00 37.71 2.83
60 61 2.814336 GACTTACCCCAAGAGCAACAAG 59.186 50.000 0.00 0.00 37.71 3.16
61 62 2.174854 ACTTACCCCAAGAGCAACAAGT 59.825 45.455 0.00 0.00 37.71 3.16
62 63 2.270352 TACCCCAAGAGCAACAAGTG 57.730 50.000 0.00 0.00 0.00 3.16
63 64 0.468029 ACCCCAAGAGCAACAAGTGG 60.468 55.000 0.00 0.00 0.00 4.00
64 65 0.468029 CCCCAAGAGCAACAAGTGGT 60.468 55.000 0.00 0.00 41.89 4.16
65 66 1.402787 CCCAAGAGCAACAAGTGGTT 58.597 50.000 0.00 0.00 38.34 3.67
77 78 5.836024 AACAAGTGGTTGGATAGTTAGGA 57.164 39.130 0.00 0.00 38.60 2.94
78 79 5.422214 ACAAGTGGTTGGATAGTTAGGAG 57.578 43.478 0.00 0.00 38.07 3.69
79 80 4.225267 ACAAGTGGTTGGATAGTTAGGAGG 59.775 45.833 0.00 0.00 38.07 4.30
80 81 3.385115 AGTGGTTGGATAGTTAGGAGGG 58.615 50.000 0.00 0.00 0.00 4.30
81 82 3.113043 GTGGTTGGATAGTTAGGAGGGT 58.887 50.000 0.00 0.00 0.00 4.34
82 83 3.134262 GTGGTTGGATAGTTAGGAGGGTC 59.866 52.174 0.00 0.00 0.00 4.46
83 84 3.246203 TGGTTGGATAGTTAGGAGGGTCA 60.246 47.826 0.00 0.00 0.00 4.02
84 85 3.974642 GGTTGGATAGTTAGGAGGGTCAT 59.025 47.826 0.00 0.00 0.00 3.06
85 86 4.202367 GGTTGGATAGTTAGGAGGGTCATG 60.202 50.000 0.00 0.00 0.00 3.07
86 87 3.587498 TGGATAGTTAGGAGGGTCATGG 58.413 50.000 0.00 0.00 0.00 3.66
87 88 3.051341 TGGATAGTTAGGAGGGTCATGGT 60.051 47.826 0.00 0.00 0.00 3.55
88 89 4.171243 TGGATAGTTAGGAGGGTCATGGTA 59.829 45.833 0.00 0.00 0.00 3.25
89 90 5.162760 TGGATAGTTAGGAGGGTCATGGTAT 60.163 44.000 0.00 0.00 0.00 2.73
90 91 5.422650 GGATAGTTAGGAGGGTCATGGTATC 59.577 48.000 0.00 0.00 0.00 2.24
91 92 3.588569 AGTTAGGAGGGTCATGGTATCC 58.411 50.000 0.00 0.00 0.00 2.59
92 93 2.638363 GTTAGGAGGGTCATGGTATCCC 59.362 54.545 0.00 0.48 41.36 3.85
94 95 1.059913 GGAGGGTCATGGTATCCCAG 58.940 60.000 14.89 0.00 46.15 4.45
95 96 1.059913 GAGGGTCATGGTATCCCAGG 58.940 60.000 14.89 0.00 46.15 4.45
96 97 0.346932 AGGGTCATGGTATCCCAGGT 59.653 55.000 14.89 0.00 46.15 4.00
97 98 1.222567 GGGTCATGGTATCCCAGGTT 58.777 55.000 9.95 0.00 46.15 3.50
98 99 1.569072 GGGTCATGGTATCCCAGGTTT 59.431 52.381 9.95 0.00 46.15 3.27
99 100 2.654863 GGTCATGGTATCCCAGGTTTG 58.345 52.381 0.00 0.00 46.15 2.93
100 101 2.241176 GGTCATGGTATCCCAGGTTTGA 59.759 50.000 0.00 0.00 46.15 2.69
101 102 3.279434 GTCATGGTATCCCAGGTTTGAC 58.721 50.000 0.00 0.00 46.15 3.18
102 103 2.916269 TCATGGTATCCCAGGTTTGACA 59.084 45.455 0.00 0.00 46.15 3.58
103 104 2.871096 TGGTATCCCAGGTTTGACAC 57.129 50.000 0.00 0.00 35.17 3.67
104 105 2.058705 TGGTATCCCAGGTTTGACACA 58.941 47.619 0.00 0.00 35.17 3.72
105 106 2.647299 TGGTATCCCAGGTTTGACACAT 59.353 45.455 0.00 0.00 35.17 3.21
106 107 3.075283 TGGTATCCCAGGTTTGACACATT 59.925 43.478 0.00 0.00 35.17 2.71
107 108 3.694566 GGTATCCCAGGTTTGACACATTC 59.305 47.826 0.00 0.00 0.00 2.67
108 109 3.814504 ATCCCAGGTTTGACACATTCT 57.185 42.857 0.00 0.00 0.00 2.40
109 110 4.927267 ATCCCAGGTTTGACACATTCTA 57.073 40.909 0.00 0.00 0.00 2.10
110 111 4.286297 TCCCAGGTTTGACACATTCTAG 57.714 45.455 0.00 0.00 0.00 2.43
111 112 3.650942 TCCCAGGTTTGACACATTCTAGT 59.349 43.478 0.00 0.00 0.00 2.57
112 113 4.003648 CCCAGGTTTGACACATTCTAGTC 58.996 47.826 0.00 0.00 35.37 2.59
113 114 4.263068 CCCAGGTTTGACACATTCTAGTCT 60.263 45.833 0.00 0.00 35.81 3.24
114 115 4.932200 CCAGGTTTGACACATTCTAGTCTC 59.068 45.833 0.00 0.00 35.81 3.36
115 116 5.511373 CCAGGTTTGACACATTCTAGTCTCA 60.511 44.000 0.00 0.00 35.81 3.27
116 117 6.169094 CAGGTTTGACACATTCTAGTCTCAT 58.831 40.000 0.00 0.00 35.81 2.90
117 118 6.652481 CAGGTTTGACACATTCTAGTCTCATT 59.348 38.462 0.00 0.00 35.81 2.57
118 119 7.819415 CAGGTTTGACACATTCTAGTCTCATTA 59.181 37.037 0.00 0.00 35.81 1.90
119 120 8.375506 AGGTTTGACACATTCTAGTCTCATTAA 58.624 33.333 0.00 0.00 35.81 1.40
120 121 9.167311 GGTTTGACACATTCTAGTCTCATTAAT 57.833 33.333 0.00 0.00 35.81 1.40
121 122 9.979270 GTTTGACACATTCTAGTCTCATTAATG 57.021 33.333 9.29 9.29 35.81 1.90
122 123 9.725019 TTTGACACATTCTAGTCTCATTAATGT 57.275 29.630 14.97 0.00 40.44 2.71
126 127 8.899427 CACATTCTAGTCTCATTAATGTGGAT 57.101 34.615 14.97 7.71 46.95 3.41
127 128 9.334947 CACATTCTAGTCTCATTAATGTGGATT 57.665 33.333 14.97 12.75 46.95 3.01
135 136 9.775854 AGTCTCATTAATGTGGATTATTCTCTG 57.224 33.333 14.97 0.00 0.00 3.35
136 137 9.770097 GTCTCATTAATGTGGATTATTCTCTGA 57.230 33.333 14.97 0.00 0.00 3.27
144 145 9.690913 AATGTGGATTATTCTCTGAATGAAAGA 57.309 29.630 3.35 0.00 0.00 2.52
145 146 8.498054 TGTGGATTATTCTCTGAATGAAAGAC 57.502 34.615 3.35 0.00 0.00 3.01
146 147 7.278646 TGTGGATTATTCTCTGAATGAAAGACG 59.721 37.037 3.35 0.00 0.00 4.18
147 148 6.763135 TGGATTATTCTCTGAATGAAAGACGG 59.237 38.462 3.35 0.00 0.00 4.79
148 149 6.293135 GGATTATTCTCTGAATGAAAGACGGC 60.293 42.308 3.35 0.00 0.00 5.68
149 150 3.401033 TTCTCTGAATGAAAGACGGCA 57.599 42.857 0.00 0.00 0.00 5.69
150 151 3.616956 TCTCTGAATGAAAGACGGCAT 57.383 42.857 0.00 0.00 0.00 4.40
151 152 3.942829 TCTCTGAATGAAAGACGGCATT 58.057 40.909 0.00 0.00 37.43 3.56
152 153 4.326826 TCTCTGAATGAAAGACGGCATTT 58.673 39.130 0.00 0.00 35.05 2.32
153 154 4.393062 TCTCTGAATGAAAGACGGCATTTC 59.607 41.667 0.00 0.00 35.05 2.17
154 155 3.125146 TCTGAATGAAAGACGGCATTTCG 59.875 43.478 0.00 0.00 39.10 3.46
155 156 2.161410 TGAATGAAAGACGGCATTTCGG 59.839 45.455 0.00 0.00 39.10 4.30
156 157 1.821216 ATGAAAGACGGCATTTCGGT 58.179 45.000 0.00 0.00 39.10 4.69
157 158 1.600023 TGAAAGACGGCATTTCGGTT 58.400 45.000 0.00 0.00 39.10 4.44
158 159 1.265635 TGAAAGACGGCATTTCGGTTG 59.734 47.619 0.00 0.00 39.10 3.77
159 160 1.533731 GAAAGACGGCATTTCGGTTGA 59.466 47.619 0.00 0.00 0.00 3.18
160 161 1.821216 AAGACGGCATTTCGGTTGAT 58.179 45.000 0.00 0.00 0.00 2.57
161 162 2.684001 AGACGGCATTTCGGTTGATA 57.316 45.000 0.00 0.00 0.00 2.15
162 163 2.550978 AGACGGCATTTCGGTTGATAG 58.449 47.619 0.00 0.00 0.00 2.08
163 164 1.597663 GACGGCATTTCGGTTGATAGG 59.402 52.381 0.00 0.00 0.00 2.57
164 165 0.307760 CGGCATTTCGGTTGATAGGC 59.692 55.000 0.00 0.00 33.02 3.93
165 166 1.388547 GGCATTTCGGTTGATAGGCA 58.611 50.000 0.00 0.00 35.05 4.75
166 167 1.334869 GGCATTTCGGTTGATAGGCAG 59.665 52.381 0.00 0.00 35.05 4.85
167 168 2.288666 GCATTTCGGTTGATAGGCAGA 58.711 47.619 0.00 0.00 33.82 4.26
168 169 2.032178 GCATTTCGGTTGATAGGCAGAC 59.968 50.000 0.00 0.00 33.82 3.51
169 170 3.270027 CATTTCGGTTGATAGGCAGACA 58.730 45.455 0.00 0.00 0.00 3.41
170 171 2.380084 TTCGGTTGATAGGCAGACAC 57.620 50.000 0.00 0.00 0.00 3.67
171 172 1.262417 TCGGTTGATAGGCAGACACA 58.738 50.000 0.00 0.00 0.00 3.72
172 173 1.621317 TCGGTTGATAGGCAGACACAA 59.379 47.619 0.00 0.00 0.00 3.33
173 174 1.732259 CGGTTGATAGGCAGACACAAC 59.268 52.381 0.00 0.00 39.67 3.32
174 175 2.612972 CGGTTGATAGGCAGACACAACT 60.613 50.000 0.00 0.00 40.08 3.16
175 176 3.003480 GGTTGATAGGCAGACACAACTC 58.997 50.000 0.00 0.00 40.08 3.01
176 177 3.307059 GGTTGATAGGCAGACACAACTCT 60.307 47.826 0.00 0.00 40.08 3.24
177 178 3.599730 TGATAGGCAGACACAACTCTG 57.400 47.619 0.00 0.00 40.73 3.35
193 194 5.012458 ACAACTCTGACCAGATCTTCATCAA 59.988 40.000 0.00 0.00 36.76 2.57
197 198 6.822676 ACTCTGACCAGATCTTCATCAATTTC 59.177 38.462 0.00 0.00 36.76 2.17
198 199 6.955364 TCTGACCAGATCTTCATCAATTTCT 58.045 36.000 0.00 0.00 31.41 2.52
202 203 9.170734 TGACCAGATCTTCATCAATTTCTAAAG 57.829 33.333 0.00 0.00 0.00 1.85
277 278 1.231958 TTACCAAAGCGCAACTCCGG 61.232 55.000 11.47 0.00 0.00 5.14
286 287 1.021390 CGCAACTCCGGCTCAATCTT 61.021 55.000 0.00 0.00 0.00 2.40
289 290 2.352960 GCAACTCCGGCTCAATCTTAAG 59.647 50.000 0.00 0.00 0.00 1.85
302 303 6.548251 GCTCAATCTTAAGTAGTACTCCCTCT 59.452 42.308 2.58 0.00 0.00 3.69
305 306 8.554870 TCAATCTTAAGTAGTACTCCCTCTGTA 58.445 37.037 2.58 0.00 0.00 2.74
306 307 9.186837 CAATCTTAAGTAGTACTCCCTCTGTAA 57.813 37.037 2.58 0.00 0.00 2.41
307 308 9.765295 AATCTTAAGTAGTACTCCCTCTGTAAA 57.235 33.333 2.58 0.00 0.00 2.01
308 309 9.939424 ATCTTAAGTAGTACTCCCTCTGTAAAT 57.061 33.333 2.58 0.00 0.00 1.40
309 310 9.765295 TCTTAAGTAGTACTCCCTCTGTAAATT 57.235 33.333 2.58 0.00 0.00 1.82
372 373 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
373 374 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
374 375 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
375 376 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
383 384 8.728337 ATTAGTTTACGGAGGGAGTATTTTTC 57.272 34.615 0.00 0.00 0.00 2.29
392 393 7.068962 ACGGAGGGAGTATTTTTCAAAGAAAAA 59.931 33.333 16.95 16.95 32.75 1.94
452 453 2.280186 GGCATTCCCGACGCTAGG 60.280 66.667 0.00 0.00 0.00 3.02
471 472 1.528129 GGAGGAGCAACTTTGACCTG 58.472 55.000 11.20 0.00 36.91 4.00
474 475 0.954452 GGAGCAACTTTGACCTGGTG 59.046 55.000 2.82 0.00 0.00 4.17
478 479 3.626930 AGCAACTTTGACCTGGTGTTTA 58.373 40.909 2.82 0.00 0.00 2.01
479 480 4.215109 AGCAACTTTGACCTGGTGTTTAT 58.785 39.130 2.82 0.00 0.00 1.40
480 481 4.278419 AGCAACTTTGACCTGGTGTTTATC 59.722 41.667 2.82 0.00 0.00 1.75
497 498 9.983804 GGTGTTTATCATAGTACTTAAAACAGC 57.016 33.333 21.11 21.11 42.69 4.40
602 608 3.074412 CAATGGCTCGTTATACCATCCC 58.926 50.000 0.00 0.00 43.40 3.85
695 721 5.039333 GCATTTTGATCAAGACATGGCTAC 58.961 41.667 0.00 0.00 0.00 3.58
758 784 2.029020 GCAACTCAAATGAACCCCCTTC 60.029 50.000 0.00 0.00 0.00 3.46
765 791 2.671963 GAACCCCCTTCGCCACAC 60.672 66.667 0.00 0.00 0.00 3.82
839 865 2.650778 GAAAAAGCGGGCCAGGTG 59.349 61.111 8.77 0.00 0.00 4.00
1005 1050 2.596553 TATTCGGCGCGGGAATGGTT 62.597 55.000 26.21 10.74 35.78 3.67
1014 1059 4.833989 GGAATGGTTCCCGGGGCC 62.834 72.222 23.50 23.21 44.30 5.80
1173 1218 4.108902 ACGCAGGTGACGCATATG 57.891 55.556 0.00 0.00 0.00 1.78
1197 1242 3.056250 ACACGCTCTCTGACAGATTGATT 60.056 43.478 5.42 0.00 0.00 2.57
1198 1243 3.306434 CACGCTCTCTGACAGATTGATTG 59.694 47.826 5.42 0.00 0.00 2.67
1199 1244 3.056250 ACGCTCTCTGACAGATTGATTGT 60.056 43.478 5.42 0.22 0.00 2.71
1200 1245 3.931468 CGCTCTCTGACAGATTGATTGTT 59.069 43.478 5.42 0.00 0.00 2.83
1203 1248 5.871524 GCTCTCTGACAGATTGATTGTTACA 59.128 40.000 5.42 0.00 0.00 2.41
1253 1309 2.802667 CGCGCTCTGTTTCGATGGG 61.803 63.158 5.56 0.00 0.00 4.00
1399 1456 0.108804 GCTCAAGCTGCTGGTACGTA 60.109 55.000 1.35 0.00 38.21 3.57
1403 1460 0.388134 AAGCTGCTGGTACGTACGTG 60.388 55.000 30.25 14.77 0.00 4.49
1404 1461 2.442188 GCTGCTGGTACGTACGTGC 61.442 63.158 30.25 27.93 0.00 5.34
1405 1462 2.126773 TGCTGGTACGTACGTGCG 60.127 61.111 30.25 24.57 37.94 5.34
1421 1478 1.227853 GCGTTCCCCTGTGAACAGT 60.228 57.895 9.49 0.00 43.84 3.55
1431 1488 1.295792 TGTGAACAGTTTCGCAGTCC 58.704 50.000 0.00 0.00 45.35 3.85
1435 1492 1.264288 GAACAGTTTCGCAGTCCCTTG 59.736 52.381 0.00 0.00 0.00 3.61
1461 1521 1.044725 CGTGCGTTTCTTGATGTTGC 58.955 50.000 0.00 0.00 0.00 4.17
1465 1525 0.729140 CGTTTCTTGATGTTGCCGGC 60.729 55.000 22.73 22.73 0.00 6.13
1676 1739 2.284684 CGTCACTAGTAGCTACCAGTCG 59.715 54.545 20.31 17.54 0.00 4.18
1704 1773 1.722034 TCACCTGCCTCTCAACTCTT 58.278 50.000 0.00 0.00 0.00 2.85
1706 1775 2.828520 TCACCTGCCTCTCAACTCTTAG 59.171 50.000 0.00 0.00 0.00 2.18
1769 1838 3.927501 CTCCTCCGAGGGTGAGTC 58.072 66.667 14.76 0.00 35.59 3.36
1773 1842 2.745100 TCCGAGGGTGAGTCGACG 60.745 66.667 10.46 0.00 39.92 5.12
1774 1843 2.745100 CCGAGGGTGAGTCGACGA 60.745 66.667 10.46 0.00 39.92 4.20
1776 1845 2.876219 GAGGGTGAGTCGACGACC 59.124 66.667 23.76 24.19 32.18 4.79
1777 1846 1.674980 GAGGGTGAGTCGACGACCT 60.675 63.158 28.29 23.74 32.18 3.85
1778 1847 1.924320 GAGGGTGAGTCGACGACCTG 61.924 65.000 28.29 0.00 32.18 4.00
1783 1852 1.469308 GTGAGTCGACGACCTGAATCT 59.531 52.381 23.76 3.76 32.18 2.40
1785 1854 0.727970 AGTCGACGACCTGAATCTCG 59.272 55.000 23.76 0.00 32.18 4.04
1788 1857 0.248134 CGACGACCTGAATCTCGGTC 60.248 60.000 10.75 10.75 44.88 4.79
1790 1859 1.473278 GACGACCTGAATCTCGGTCTT 59.527 52.381 16.12 9.70 45.88 3.01
1791 1860 1.202582 ACGACCTGAATCTCGGTCTTG 59.797 52.381 16.12 7.67 45.88 3.02
1792 1861 1.472878 CGACCTGAATCTCGGTCTTGA 59.527 52.381 16.12 0.00 45.88 3.02
1809 1895 1.519898 GAACCGGCGGCGAGATTAA 60.520 57.895 34.49 0.00 0.00 1.40
1833 1919 2.299582 TGATGGTTTTGGGATGCTGTTG 59.700 45.455 0.00 0.00 0.00 3.33
1868 1957 1.984570 CTTCGAGGAGTGCAGGGGA 60.985 63.158 0.00 0.00 0.00 4.81
2019 2108 2.599281 TCAACGACTCCTCCCGCA 60.599 61.111 0.00 0.00 0.00 5.69
2066 2155 0.597568 CGGGTACGTTGTCACCAGTA 59.402 55.000 7.50 0.00 36.48 2.74
2077 2166 1.202582 GTCACCAGTATCGAGTGTGCT 59.797 52.381 0.00 0.00 33.21 4.40
2092 2181 3.198635 AGTGTGCTCTGTATGGCTGTATT 59.801 43.478 0.00 0.00 0.00 1.89
2121 2213 1.304217 TCCCCGTCAGAGTCAGACC 60.304 63.158 9.82 0.00 32.41 3.85
2124 2216 2.626780 CCGTCAGAGTCAGACCGCA 61.627 63.158 9.82 0.00 32.41 5.69
2143 2235 1.014352 AACGCCTTAACATCATCCGC 58.986 50.000 0.00 0.00 0.00 5.54
2187 2281 2.406357 GCGTTGCTTGCATTTCTTCTTC 59.594 45.455 0.00 0.00 0.00 2.87
2212 2306 9.664332 TCTTCTTCTGAAAGATAAGATCAAAGG 57.336 33.333 0.00 0.00 46.36 3.11
2213 2307 9.447157 CTTCTTCTGAAAGATAAGATCAAAGGT 57.553 33.333 0.00 0.00 46.36 3.50
2267 2375 2.872245 TGACAAAATAGATAGCAGCCGC 59.128 45.455 0.00 0.00 38.99 6.53
2268 2376 2.872245 GACAAAATAGATAGCAGCCGCA 59.128 45.455 0.00 0.00 42.27 5.69
2269 2377 2.874701 ACAAAATAGATAGCAGCCGCAG 59.125 45.455 0.00 0.00 42.27 5.18
2317 2425 1.511850 TGGATGTGAACTTGACAGCG 58.488 50.000 0.00 0.00 30.25 5.18
2319 2427 2.143122 GGATGTGAACTTGACAGCGAA 58.857 47.619 0.00 0.00 30.25 4.70
2323 2442 2.286950 TGTGAACTTGACAGCGAAATGC 60.287 45.455 0.00 0.00 46.98 3.56
2356 2478 5.877012 CCTACATTGCTGCCGATAATTAGAT 59.123 40.000 0.00 0.00 0.00 1.98
2402 2529 0.039798 ACGCTTCATTTGCAGCACAG 60.040 50.000 0.00 0.00 33.92 3.66
2414 2541 3.588955 TGCAGCACAGAGTTACATAGTG 58.411 45.455 0.00 0.00 0.00 2.74
2418 2545 4.800993 CAGCACAGAGTTACATAGTGTAGC 59.199 45.833 0.00 0.00 33.92 3.58
2441 2568 5.562307 GCAGCATGATTGATTGATCTACACC 60.562 44.000 0.00 0.00 39.69 4.16
2461 2588 1.135972 CAGTGTGGTCGCTTTGTATGC 60.136 52.381 0.00 0.00 31.46 3.14
2557 2684 3.480470 GCCACGGTATCAGGTACTACTA 58.520 50.000 0.00 0.00 36.02 1.82
2559 2686 3.817647 CCACGGTATCAGGTACTACTACC 59.182 52.174 0.00 0.00 42.84 3.18
2562 2689 3.817647 CGGTATCAGGTACTACTACCACC 59.182 52.174 11.98 0.26 44.75 4.61
2595 2722 5.464030 TCTTTACTACTCACTGAACCCAC 57.536 43.478 0.00 0.00 0.00 4.61
2596 2723 5.145564 TCTTTACTACTCACTGAACCCACT 58.854 41.667 0.00 0.00 0.00 4.00
2597 2724 4.866508 TTACTACTCACTGAACCCACTG 57.133 45.455 0.00 0.00 0.00 3.66
2598 2725 2.958818 ACTACTCACTGAACCCACTGA 58.041 47.619 0.00 0.00 0.00 3.41
2599 2726 3.305720 ACTACTCACTGAACCCACTGAA 58.694 45.455 0.00 0.00 0.00 3.02
2600 2727 2.622064 ACTCACTGAACCCACTGAAC 57.378 50.000 0.00 0.00 0.00 3.18
2601 2728 1.141053 ACTCACTGAACCCACTGAACC 59.859 52.381 0.00 0.00 0.00 3.62
2602 2729 0.472471 TCACTGAACCCACTGAACCC 59.528 55.000 0.00 0.00 0.00 4.11
2603 2730 0.182537 CACTGAACCCACTGAACCCA 59.817 55.000 0.00 0.00 0.00 4.51
2706 2833 2.701780 CCACGGACAGGGTCGAGAG 61.702 68.421 0.00 0.00 32.65 3.20
2746 2873 0.106268 TGCTCACCAACACCACCAAT 60.106 50.000 0.00 0.00 0.00 3.16
2776 2903 3.071602 GGATCAAGAGCTGGCAGGTAATA 59.928 47.826 20.63 6.09 0.00 0.98
2777 2904 4.444876 GGATCAAGAGCTGGCAGGTAATAA 60.445 45.833 20.63 6.49 0.00 1.40
2779 2906 5.116084 TCAAGAGCTGGCAGGTAATAATT 57.884 39.130 20.63 6.94 0.00 1.40
2780 2907 5.509498 TCAAGAGCTGGCAGGTAATAATTT 58.491 37.500 20.63 4.90 0.00 1.82
2781 2908 6.658849 TCAAGAGCTGGCAGGTAATAATTTA 58.341 36.000 20.63 0.00 0.00 1.40
2782 2909 7.116075 TCAAGAGCTGGCAGGTAATAATTTAA 58.884 34.615 20.63 0.00 0.00 1.52
2783 2910 6.944234 AGAGCTGGCAGGTAATAATTTAAC 57.056 37.500 20.63 2.82 0.00 2.01
2784 2911 6.423182 AGAGCTGGCAGGTAATAATTTAACA 58.577 36.000 20.63 0.00 0.00 2.41
2822 2955 9.379791 AGTTTTGTTATAGAAATACTTCCTCCG 57.620 33.333 0.00 0.00 31.28 4.63
2823 2956 9.159364 GTTTTGTTATAGAAATACTTCCTCCGT 57.841 33.333 0.00 0.00 31.28 4.69
2824 2957 9.729281 TTTTGTTATAGAAATACTTCCTCCGTT 57.271 29.630 0.00 0.00 31.28 4.44
2825 2958 8.937634 TTGTTATAGAAATACTTCCTCCGTTC 57.062 34.615 0.00 0.00 31.28 3.95
2826 2959 7.495055 TGTTATAGAAATACTTCCTCCGTTCC 58.505 38.462 0.00 0.00 31.28 3.62
2827 2960 7.124599 TGTTATAGAAATACTTCCTCCGTTCCA 59.875 37.037 0.00 0.00 31.28 3.53
2828 2961 4.903045 AGAAATACTTCCTCCGTTCCAA 57.097 40.909 0.00 0.00 31.28 3.53
2829 2962 5.237236 AGAAATACTTCCTCCGTTCCAAA 57.763 39.130 0.00 0.00 31.28 3.28
2830 2963 5.816682 AGAAATACTTCCTCCGTTCCAAAT 58.183 37.500 0.00 0.00 31.28 2.32
2831 2964 6.246163 AGAAATACTTCCTCCGTTCCAAATT 58.754 36.000 0.00 0.00 31.28 1.82
2832 2965 5.897377 AATACTTCCTCCGTTCCAAATTG 57.103 39.130 0.00 0.00 0.00 2.32
2833 2966 1.886542 ACTTCCTCCGTTCCAAATTGC 59.113 47.619 0.00 0.00 0.00 3.56
2834 2967 2.162681 CTTCCTCCGTTCCAAATTGCT 58.837 47.619 0.00 0.00 0.00 3.91
2835 2968 1.821216 TCCTCCGTTCCAAATTGCTC 58.179 50.000 0.00 0.00 0.00 4.26
2836 2969 1.073125 TCCTCCGTTCCAAATTGCTCA 59.927 47.619 0.00 0.00 0.00 4.26
2837 2970 2.094675 CCTCCGTTCCAAATTGCTCAT 58.905 47.619 0.00 0.00 0.00 2.90
2838 2971 2.098117 CCTCCGTTCCAAATTGCTCATC 59.902 50.000 0.00 0.00 0.00 2.92
2839 2972 1.737236 TCCGTTCCAAATTGCTCATCG 59.263 47.619 0.00 0.00 0.00 3.84
2840 2973 1.538276 CGTTCCAAATTGCTCATCGC 58.462 50.000 0.00 0.00 39.77 4.58
2849 2982 3.859278 TGCTCATCGCAGAAATGGA 57.141 47.368 0.00 0.00 45.47 3.41
2850 2983 2.336945 TGCTCATCGCAGAAATGGAT 57.663 45.000 0.00 0.00 45.47 3.41
2851 2984 3.473923 TGCTCATCGCAGAAATGGATA 57.526 42.857 0.00 0.00 45.47 2.59
2852 2985 4.011966 TGCTCATCGCAGAAATGGATAT 57.988 40.909 0.00 0.00 45.47 1.63
2853 2986 5.151297 TGCTCATCGCAGAAATGGATATA 57.849 39.130 0.00 0.00 45.47 0.86
2854 2987 4.931601 TGCTCATCGCAGAAATGGATATAC 59.068 41.667 0.00 0.00 45.47 1.47
2855 2988 5.174395 GCTCATCGCAGAAATGGATATACT 58.826 41.667 0.00 0.00 43.58 2.12
2856 2989 5.290643 GCTCATCGCAGAAATGGATATACTC 59.709 44.000 0.00 0.00 43.58 2.59
2857 2990 5.724328 TCATCGCAGAAATGGATATACTCC 58.276 41.667 0.00 0.00 43.58 3.85
2858 2991 4.537135 TCGCAGAAATGGATATACTCCC 57.463 45.455 0.00 0.00 44.23 4.30
2859 2992 4.160329 TCGCAGAAATGGATATACTCCCT 58.840 43.478 0.00 0.00 44.23 4.20
2860 2993 4.220821 TCGCAGAAATGGATATACTCCCTC 59.779 45.833 0.00 0.00 44.23 4.30
2861 2994 4.221703 CGCAGAAATGGATATACTCCCTCT 59.778 45.833 0.00 0.00 44.23 3.69
2862 2995 5.486526 GCAGAAATGGATATACTCCCTCTG 58.513 45.833 13.56 13.56 44.23 3.35
2863 2996 5.012561 GCAGAAATGGATATACTCCCTCTGT 59.987 44.000 16.12 0.00 44.23 3.41
2864 2997 6.465035 GCAGAAATGGATATACTCCCTCTGTT 60.465 42.308 16.12 0.00 44.23 3.16
2865 2998 7.158021 CAGAAATGGATATACTCCCTCTGTTC 58.842 42.308 0.00 0.00 44.23 3.18
2866 2999 6.271159 AGAAATGGATATACTCCCTCTGTTCC 59.729 42.308 0.00 0.00 44.23 3.62
2867 3000 4.552883 TGGATATACTCCCTCTGTTCCA 57.447 45.455 0.00 0.00 44.23 3.53
2868 3001 4.890988 TGGATATACTCCCTCTGTTCCAA 58.109 43.478 0.00 0.00 44.23 3.53
2869 3002 5.285401 TGGATATACTCCCTCTGTTCCAAA 58.715 41.667 0.00 0.00 44.23 3.28
2870 3003 5.911178 TGGATATACTCCCTCTGTTCCAAAT 59.089 40.000 0.00 0.00 44.23 2.32
2871 3004 6.389869 TGGATATACTCCCTCTGTTCCAAATT 59.610 38.462 0.00 0.00 44.23 1.82
2872 3005 7.570982 TGGATATACTCCCTCTGTTCCAAATTA 59.429 37.037 0.00 0.00 44.23 1.40
2873 3006 7.878644 GGATATACTCCCTCTGTTCCAAATTAC 59.121 40.741 0.00 0.00 38.19 1.89
2874 3007 6.893020 ATACTCCCTCTGTTCCAAATTACT 57.107 37.500 0.00 0.00 0.00 2.24
2875 3008 5.167303 ACTCCCTCTGTTCCAAATTACTC 57.833 43.478 0.00 0.00 0.00 2.59
2876 3009 4.184629 CTCCCTCTGTTCCAAATTACTCG 58.815 47.826 0.00 0.00 0.00 4.18
2877 3010 3.581332 TCCCTCTGTTCCAAATTACTCGT 59.419 43.478 0.00 0.00 0.00 4.18
2878 3011 3.933332 CCCTCTGTTCCAAATTACTCGTC 59.067 47.826 0.00 0.00 0.00 4.20
2879 3012 3.612860 CCTCTGTTCCAAATTACTCGTCG 59.387 47.826 0.00 0.00 0.00 5.12
2880 3013 2.991190 TCTGTTCCAAATTACTCGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2881 3014 2.734606 CTGTTCCAAATTACTCGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2882 3015 2.734606 TGTTCCAAATTACTCGTCGCAG 59.265 45.455 0.00 0.00 0.00 5.18
2883 3016 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2884 3017 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2885 3018 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2886 3019 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2887 3020 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2888 3021 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2889 3022 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2890 3023 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2891 3024 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2892 3025 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2893 3026 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2894 3027 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2895 3028 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2896 3029 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2897 3030 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2898 3031 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
2899 3032 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
2900 3033 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
2901 3034 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2902 3035 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2903 3036 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2904 3037 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2905 3038 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2930 3063 9.730705 AAATACATCTTGATACATCCATACCTG 57.269 33.333 0.00 0.00 0.00 4.00
2931 3064 6.753913 ACATCTTGATACATCCATACCTGT 57.246 37.500 0.00 0.00 0.00 4.00
2932 3065 6.528321 ACATCTTGATACATCCATACCTGTG 58.472 40.000 0.00 0.00 0.00 3.66
2933 3066 6.327365 ACATCTTGATACATCCATACCTGTGA 59.673 38.462 0.00 0.00 0.00 3.58
2934 3067 6.161855 TCTTGATACATCCATACCTGTGAC 57.838 41.667 0.00 0.00 0.00 3.67
2935 3068 5.660864 TCTTGATACATCCATACCTGTGACA 59.339 40.000 0.00 0.00 0.00 3.58
2936 3069 5.948742 TGATACATCCATACCTGTGACAA 57.051 39.130 0.00 0.00 0.00 3.18
2937 3070 5.917462 TGATACATCCATACCTGTGACAAG 58.083 41.667 0.00 0.00 0.00 3.16
2938 3071 5.425217 TGATACATCCATACCTGTGACAAGT 59.575 40.000 0.00 0.00 0.00 3.16
2939 3072 6.609616 TGATACATCCATACCTGTGACAAGTA 59.390 38.462 0.00 0.00 0.00 2.24
2940 3073 5.755409 ACATCCATACCTGTGACAAGTAA 57.245 39.130 0.00 0.00 0.00 2.24
2941 3074 6.313519 ACATCCATACCTGTGACAAGTAAT 57.686 37.500 0.00 0.00 0.00 1.89
2942 3075 6.721318 ACATCCATACCTGTGACAAGTAATT 58.279 36.000 0.00 0.00 0.00 1.40
2943 3076 6.823689 ACATCCATACCTGTGACAAGTAATTC 59.176 38.462 0.00 0.00 0.00 2.17
2944 3077 5.416083 TCCATACCTGTGACAAGTAATTCG 58.584 41.667 0.00 0.00 0.00 3.34
2945 3078 4.570772 CCATACCTGTGACAAGTAATTCGG 59.429 45.833 0.00 0.00 0.00 4.30
2946 3079 5.416083 CATACCTGTGACAAGTAATTCGGA 58.584 41.667 0.00 0.00 0.00 4.55
2947 3080 4.345859 ACCTGTGACAAGTAATTCGGAA 57.654 40.909 0.00 0.00 0.00 4.30
2948 3081 4.062991 ACCTGTGACAAGTAATTCGGAAC 58.937 43.478 0.00 0.00 0.00 3.62
3004 3137 2.159254 ACATGTGCAACCAACTTGTGTC 60.159 45.455 0.00 0.00 34.36 3.67
3019 3152 0.814010 GTGTCGTGTTGCTTCAGGGT 60.814 55.000 0.00 0.00 0.00 4.34
3139 3272 4.752879 TGCGCGAACCAGGTAGGC 62.753 66.667 12.10 0.00 43.14 3.93
3149 3282 2.347490 AGGTAGGCCTGCAACGTG 59.653 61.111 23.21 0.00 45.05 4.49
3150 3283 3.431725 GGTAGGCCTGCAACGTGC 61.432 66.667 23.21 0.00 45.29 5.34
3151 3284 3.431725 GTAGGCCTGCAACGTGCC 61.432 66.667 17.99 5.74 44.23 5.01
3157 3290 3.883462 CTGCAACGTGCCGGATTA 58.117 55.556 5.05 0.00 44.23 1.75
3158 3291 1.423845 CTGCAACGTGCCGGATTAC 59.576 57.895 5.05 0.00 44.23 1.89
3159 3292 1.004320 TGCAACGTGCCGGATTACT 60.004 52.632 5.05 0.00 44.23 2.24
3160 3293 1.295357 TGCAACGTGCCGGATTACTG 61.295 55.000 5.05 0.00 44.23 2.74
3161 3294 1.423845 CAACGTGCCGGATTACTGC 59.576 57.895 5.05 0.00 0.00 4.40
3162 3295 1.004320 AACGTGCCGGATTACTGCA 60.004 52.632 5.05 0.00 0.00 4.41
3163 3296 0.392461 AACGTGCCGGATTACTGCAT 60.392 50.000 5.05 0.00 37.34 3.96
3164 3297 0.392461 ACGTGCCGGATTACTGCATT 60.392 50.000 5.05 0.00 37.34 3.56
3165 3298 0.732571 CGTGCCGGATTACTGCATTT 59.267 50.000 5.05 0.00 37.34 2.32
3166 3299 1.132262 CGTGCCGGATTACTGCATTTT 59.868 47.619 5.05 0.00 37.34 1.82
3167 3300 2.415357 CGTGCCGGATTACTGCATTTTT 60.415 45.455 5.05 0.00 37.34 1.94
3168 3301 3.181505 CGTGCCGGATTACTGCATTTTTA 60.182 43.478 5.05 0.00 37.34 1.52
3169 3302 4.102649 GTGCCGGATTACTGCATTTTTAC 58.897 43.478 5.05 0.00 37.34 2.01
3184 3317 5.550981 CATTTTTACCGTCTCTGAATCGTG 58.449 41.667 0.00 0.00 0.00 4.35
3188 3326 1.068472 ACCGTCTCTGAATCGTGTGAC 60.068 52.381 0.00 0.00 0.00 3.67
3192 3330 1.000717 TCTCTGAATCGTGTGACGCAA 60.001 47.619 0.00 0.00 42.21 4.85
3195 3333 0.865111 TGAATCGTGTGACGCAAAGG 59.135 50.000 0.00 0.00 42.21 3.11
3196 3334 0.165944 GAATCGTGTGACGCAAAGGG 59.834 55.000 0.00 0.00 42.21 3.95
3197 3335 1.852067 AATCGTGTGACGCAAAGGGC 61.852 55.000 0.00 0.00 42.21 5.19
3211 3349 2.487762 CAAAGGGCTGAAGCGTGAATTA 59.512 45.455 0.00 0.00 43.26 1.40
3215 3353 2.415491 GGGCTGAAGCGTGAATTAAACC 60.415 50.000 0.00 0.00 43.26 3.27
3220 3358 3.880490 TGAAGCGTGAATTAAACCTGTGT 59.120 39.130 0.00 0.00 0.00 3.72
3221 3359 3.896648 AGCGTGAATTAAACCTGTGTG 57.103 42.857 0.00 0.00 0.00 3.82
3222 3360 3.211045 AGCGTGAATTAAACCTGTGTGT 58.789 40.909 0.00 0.00 0.00 3.72
3223 3361 3.250040 AGCGTGAATTAAACCTGTGTGTC 59.750 43.478 0.00 0.00 0.00 3.67
3538 3680 2.931325 TGCCGGTGTTTTCGACATATAC 59.069 45.455 1.90 0.00 41.10 1.47
3539 3681 3.192466 GCCGGTGTTTTCGACATATACT 58.808 45.455 1.90 0.00 41.10 2.12
3540 3682 4.142204 TGCCGGTGTTTTCGACATATACTA 60.142 41.667 1.90 0.00 41.10 1.82
3541 3683 4.443394 GCCGGTGTTTTCGACATATACTAG 59.557 45.833 1.90 0.00 41.10 2.57
3542 3684 4.443394 CCGGTGTTTTCGACATATACTAGC 59.557 45.833 0.00 0.00 41.10 3.42
3545 3694 6.074994 CGGTGTTTTCGACATATACTAGCTTC 60.075 42.308 0.00 0.00 41.10 3.86
3551 3700 7.997773 TTCGACATATACTAGCTTCCTACAT 57.002 36.000 0.00 0.00 0.00 2.29
3572 3721 7.255491 ACATAGTGCATGTGACATGAATTAG 57.745 36.000 28.21 14.40 46.41 1.73
3573 3722 7.049754 ACATAGTGCATGTGACATGAATTAGA 58.950 34.615 28.21 8.49 46.41 2.10
3574 3723 7.718314 ACATAGTGCATGTGACATGAATTAGAT 59.282 33.333 28.21 9.01 46.41 1.98
3576 3725 9.955102 ATAGTGCATGTGACATGAATTAGATAT 57.045 29.630 28.21 12.19 0.00 1.63
3580 3729 9.947433 TGCATGTGACATGAATTAGATATATCA 57.053 29.630 28.21 9.31 0.00 2.15
3678 3828 5.004061 CACTAATTGATTTGTTGCTCGCATG 59.996 40.000 0.00 0.00 0.00 4.06
3692 3842 1.360192 GCATGGAGGCGGTAATTGC 59.640 57.895 0.00 0.00 0.00 3.56
3706 3856 4.260784 CGGTAATTGCCTTAGAGATGTTGC 60.261 45.833 11.07 0.00 0.00 4.17
3710 3860 4.778213 TTGCCTTAGAGATGTTGCCTAT 57.222 40.909 0.00 0.00 0.00 2.57
3782 3946 8.296713 ACATGTCACAAACAAGTTTATATCACC 58.703 33.333 0.00 0.00 42.37 4.02
3805 3969 4.959596 ATGATGCTGTGAGTGTCATTTC 57.040 40.909 0.00 0.00 0.00 2.17
3819 3983 2.034053 GTCATTTCGGTGCTTTTCCACA 59.966 45.455 0.00 0.00 37.46 4.17
3825 3989 6.576662 TTTCGGTGCTTTTCCACAATATAA 57.423 33.333 0.00 0.00 37.46 0.98
3828 3992 5.708230 TCGGTGCTTTTCCACAATATAACTT 59.292 36.000 0.00 0.00 37.46 2.66
3834 3998 7.598493 TGCTTTTCCACAATATAACTTCTTTGC 59.402 33.333 0.00 0.00 0.00 3.68
3837 4001 4.697828 TCCACAATATAACTTCTTTGCGCA 59.302 37.500 5.66 5.66 0.00 6.09
3839 4003 5.512788 CCACAATATAACTTCTTTGCGCAAG 59.487 40.000 23.68 14.23 43.44 4.01
3857 4021 4.210331 GCAAGGGTGGAGATTTACATGAT 58.790 43.478 0.00 0.00 0.00 2.45
3858 4022 4.276926 GCAAGGGTGGAGATTTACATGATC 59.723 45.833 0.00 0.00 0.00 2.92
3861 4025 3.817647 GGGTGGAGATTTACATGATCTGC 59.182 47.826 0.00 3.45 40.94 4.26
3883 4047 8.363390 TCTGCAAATTTTAATATCAACACACCA 58.637 29.630 0.00 0.00 0.00 4.17
3890 4054 8.635877 TTTTAATATCAACACACCACACAAAC 57.364 30.769 0.00 0.00 0.00 2.93
3896 4060 4.459337 TCAACACACCACACAAACAATACA 59.541 37.500 0.00 0.00 0.00 2.29
3897 4061 5.126222 TCAACACACCACACAAACAATACAT 59.874 36.000 0.00 0.00 0.00 2.29
3906 4070 6.016693 CCACACAAACAATACATGAGTAACCA 60.017 38.462 0.00 0.00 33.13 3.67
3910 4074 7.378461 CACAAACAATACATGAGTAACCAACAC 59.622 37.037 0.00 0.00 33.13 3.32
3911 4075 7.284489 ACAAACAATACATGAGTAACCAACACT 59.716 33.333 0.00 0.00 33.13 3.55
3918 4082 6.173339 ACATGAGTAACCAACACTATTGAGG 58.827 40.000 0.00 0.00 0.00 3.86
3941 9244 9.310449 GAGGTTATCATACTCCTTATAAGTGGA 57.690 37.037 11.50 2.78 0.00 4.02
3992 9295 4.074970 CTGATACTTTGTGGTGGCTTTCT 58.925 43.478 0.00 0.00 0.00 2.52
4013 9316 7.452880 TTCTAGTGGTCCAATTTCAGATTTG 57.547 36.000 0.00 0.00 0.00 2.32
4022 9325 5.036737 CCAATTTCAGATTTGGCGTACATC 58.963 41.667 0.00 0.00 36.28 3.06
4045 9348 3.322541 TGCCAAGCATCCCATCATAAATG 59.677 43.478 0.00 0.00 31.71 2.32
4087 9390 5.619981 GCAACAGTTAAGCATAAGGAACCAG 60.620 44.000 0.00 0.00 0.00 4.00
4089 9392 4.009675 CAGTTAAGCATAAGGAACCAGCA 58.990 43.478 0.00 0.00 0.00 4.41
4096 9399 6.796785 AGCATAAGGAACCAGCATTATTTT 57.203 33.333 0.00 0.00 0.00 1.82
4119 9422 6.690194 TGTTAGTTTTAACGGGTTGCTTTA 57.310 33.333 0.00 0.00 41.68 1.85
4160 9463 7.065803 CCAACTTAATCGTCATCAACATTAGGT 59.934 37.037 0.00 0.00 30.22 3.08
4195 9498 6.349611 GCAGAATACTTGTCCACAATGTGAAT 60.350 38.462 15.91 0.00 35.23 2.57
4208 9511 5.119588 CACAATGTGAATCTTGATTTGGCAC 59.880 40.000 7.78 2.85 35.23 5.01
4294 9599 7.482654 TCTTCATAGCTATATTGTGTTGCAC 57.517 36.000 5.77 0.00 34.56 4.57
4302 9607 1.838913 ATTGTGTTGCACTTTGTCGC 58.161 45.000 0.00 0.00 35.11 5.19
4394 9699 6.753744 GGACTGATGTTAGGAAAATTGCAATC 59.246 38.462 13.38 0.55 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.506437 GGTTAAACTAAGTATTTTACGCACCTT 58.494 33.333 0.00 0.00 0.00 3.50
11 12 7.094848 TGGGTTAAACTAAGTATTTTACGCACC 60.095 37.037 0.00 0.00 36.92 5.01
12 13 7.805700 TGGGTTAAACTAAGTATTTTACGCAC 58.194 34.615 0.00 0.00 36.92 5.34
13 14 7.976135 TGGGTTAAACTAAGTATTTTACGCA 57.024 32.000 0.00 3.29 38.42 5.24
14 15 8.720562 TCTTGGGTTAAACTAAGTATTTTACGC 58.279 33.333 15.36 0.00 34.19 4.42
20 21 9.730705 GGTAAGTCTTGGGTTAAACTAAGTATT 57.269 33.333 15.36 13.13 0.00 1.89
21 22 8.324306 GGGTAAGTCTTGGGTTAAACTAAGTAT 58.676 37.037 15.36 6.64 0.00 2.12
22 23 7.256655 GGGGTAAGTCTTGGGTTAAACTAAGTA 60.257 40.741 15.36 0.00 0.00 2.24
23 24 6.466326 GGGGTAAGTCTTGGGTTAAACTAAGT 60.466 42.308 15.36 0.59 0.00 2.24
24 25 5.942236 GGGGTAAGTCTTGGGTTAAACTAAG 59.058 44.000 10.21 10.21 0.00 2.18
25 26 5.372066 TGGGGTAAGTCTTGGGTTAAACTAA 59.628 40.000 0.00 0.00 0.00 2.24
26 27 4.912744 TGGGGTAAGTCTTGGGTTAAACTA 59.087 41.667 0.00 0.00 0.00 2.24
27 28 3.723154 TGGGGTAAGTCTTGGGTTAAACT 59.277 43.478 0.00 0.00 0.00 2.66
28 29 4.103013 TGGGGTAAGTCTTGGGTTAAAC 57.897 45.455 0.00 0.00 0.00 2.01
29 30 4.416179 TCTTGGGGTAAGTCTTGGGTTAAA 59.584 41.667 0.00 0.00 37.65 1.52
30 31 3.982052 TCTTGGGGTAAGTCTTGGGTTAA 59.018 43.478 0.00 0.00 37.65 2.01
31 32 3.585732 CTCTTGGGGTAAGTCTTGGGTTA 59.414 47.826 0.00 0.00 37.65 2.85
32 33 2.375509 CTCTTGGGGTAAGTCTTGGGTT 59.624 50.000 0.00 0.00 37.65 4.11
33 34 1.985895 CTCTTGGGGTAAGTCTTGGGT 59.014 52.381 0.00 0.00 37.65 4.51
34 35 1.340114 GCTCTTGGGGTAAGTCTTGGG 60.340 57.143 0.00 0.00 37.65 4.12
35 36 1.351017 TGCTCTTGGGGTAAGTCTTGG 59.649 52.381 0.00 0.00 37.65 3.61
36 37 2.814336 GTTGCTCTTGGGGTAAGTCTTG 59.186 50.000 0.00 0.00 37.65 3.02
37 38 2.441750 TGTTGCTCTTGGGGTAAGTCTT 59.558 45.455 0.00 0.00 37.65 3.01
38 39 2.054799 TGTTGCTCTTGGGGTAAGTCT 58.945 47.619 0.00 0.00 37.65 3.24
39 40 2.561478 TGTTGCTCTTGGGGTAAGTC 57.439 50.000 0.00 0.00 37.65 3.01
40 41 2.174854 ACTTGTTGCTCTTGGGGTAAGT 59.825 45.455 0.00 0.00 37.65 2.24
41 42 2.554032 CACTTGTTGCTCTTGGGGTAAG 59.446 50.000 0.00 0.00 37.76 2.34
42 43 2.582052 CACTTGTTGCTCTTGGGGTAA 58.418 47.619 0.00 0.00 0.00 2.85
43 44 1.202879 CCACTTGTTGCTCTTGGGGTA 60.203 52.381 0.00 0.00 0.00 3.69
44 45 0.468029 CCACTTGTTGCTCTTGGGGT 60.468 55.000 0.00 0.00 0.00 4.95
45 46 0.468029 ACCACTTGTTGCTCTTGGGG 60.468 55.000 0.00 0.00 0.00 4.96
46 47 1.402787 AACCACTTGTTGCTCTTGGG 58.597 50.000 0.00 0.00 35.31 4.12
55 56 5.280521 CCTCCTAACTATCCAACCACTTGTT 60.281 44.000 0.00 0.00 37.80 2.83
56 57 4.225267 CCTCCTAACTATCCAACCACTTGT 59.775 45.833 0.00 0.00 0.00 3.16
57 58 4.384208 CCCTCCTAACTATCCAACCACTTG 60.384 50.000 0.00 0.00 0.00 3.16
58 59 3.780850 CCCTCCTAACTATCCAACCACTT 59.219 47.826 0.00 0.00 0.00 3.16
59 60 3.246387 ACCCTCCTAACTATCCAACCACT 60.246 47.826 0.00 0.00 0.00 4.00
60 61 3.113043 ACCCTCCTAACTATCCAACCAC 58.887 50.000 0.00 0.00 0.00 4.16
61 62 3.246203 TGACCCTCCTAACTATCCAACCA 60.246 47.826 0.00 0.00 0.00 3.67
62 63 3.381335 TGACCCTCCTAACTATCCAACC 58.619 50.000 0.00 0.00 0.00 3.77
63 64 4.202367 CCATGACCCTCCTAACTATCCAAC 60.202 50.000 0.00 0.00 0.00 3.77
64 65 3.973973 CCATGACCCTCCTAACTATCCAA 59.026 47.826 0.00 0.00 0.00 3.53
65 66 3.051341 ACCATGACCCTCCTAACTATCCA 60.051 47.826 0.00 0.00 0.00 3.41
66 67 3.588569 ACCATGACCCTCCTAACTATCC 58.411 50.000 0.00 0.00 0.00 2.59
67 68 5.422650 GGATACCATGACCCTCCTAACTATC 59.577 48.000 0.00 0.00 0.00 2.08
68 69 5.342866 GGATACCATGACCCTCCTAACTAT 58.657 45.833 0.00 0.00 0.00 2.12
69 70 4.748701 GGATACCATGACCCTCCTAACTA 58.251 47.826 0.00 0.00 0.00 2.24
70 71 3.588569 GGATACCATGACCCTCCTAACT 58.411 50.000 0.00 0.00 0.00 2.24
86 87 4.589908 AGAATGTGTCAAACCTGGGATAC 58.410 43.478 0.00 0.00 0.00 2.24
87 88 4.927267 AGAATGTGTCAAACCTGGGATA 57.073 40.909 0.00 0.00 0.00 2.59
88 89 3.814504 AGAATGTGTCAAACCTGGGAT 57.185 42.857 0.00 0.00 0.00 3.85
89 90 3.650942 ACTAGAATGTGTCAAACCTGGGA 59.349 43.478 0.00 0.00 0.00 4.37
90 91 4.003648 GACTAGAATGTGTCAAACCTGGG 58.996 47.826 0.00 0.00 33.75 4.45
91 92 4.899502 AGACTAGAATGTGTCAAACCTGG 58.100 43.478 0.00 0.00 35.81 4.45
92 93 5.541845 TGAGACTAGAATGTGTCAAACCTG 58.458 41.667 0.00 0.00 37.31 4.00
93 94 5.808366 TGAGACTAGAATGTGTCAAACCT 57.192 39.130 0.00 0.00 37.31 3.50
94 95 8.547967 TTAATGAGACTAGAATGTGTCAAACC 57.452 34.615 0.00 0.00 42.19 3.27
95 96 9.979270 CATTAATGAGACTAGAATGTGTCAAAC 57.021 33.333 10.04 0.00 42.19 2.93
96 97 9.725019 ACATTAATGAGACTAGAATGTGTCAAA 57.275 29.630 22.16 0.00 42.19 2.69
97 98 9.154847 CACATTAATGAGACTAGAATGTGTCAA 57.845 33.333 22.16 0.00 46.29 3.18
98 99 8.707938 CACATTAATGAGACTAGAATGTGTCA 57.292 34.615 22.16 3.43 46.29 3.58
109 110 9.775854 CAGAGAATAATCCACATTAATGAGACT 57.224 33.333 22.16 10.30 0.00 3.24
110 111 9.770097 TCAGAGAATAATCCACATTAATGAGAC 57.230 33.333 22.16 6.18 0.00 3.36
118 119 9.690913 TCTTTCATTCAGAGAATAATCCACATT 57.309 29.630 0.00 0.00 0.00 2.71
119 120 9.118300 GTCTTTCATTCAGAGAATAATCCACAT 57.882 33.333 0.00 0.00 0.00 3.21
120 121 7.278646 CGTCTTTCATTCAGAGAATAATCCACA 59.721 37.037 0.00 0.00 0.00 4.17
121 122 7.254590 CCGTCTTTCATTCAGAGAATAATCCAC 60.255 40.741 0.00 0.00 0.00 4.02
122 123 6.763135 CCGTCTTTCATTCAGAGAATAATCCA 59.237 38.462 0.00 0.00 0.00 3.41
123 124 6.293135 GCCGTCTTTCATTCAGAGAATAATCC 60.293 42.308 0.00 0.00 0.00 3.01
124 125 6.258727 TGCCGTCTTTCATTCAGAGAATAATC 59.741 38.462 0.00 0.00 0.00 1.75
125 126 6.115446 TGCCGTCTTTCATTCAGAGAATAAT 58.885 36.000 0.00 0.00 0.00 1.28
126 127 5.487433 TGCCGTCTTTCATTCAGAGAATAA 58.513 37.500 0.00 0.00 0.00 1.40
127 128 5.084818 TGCCGTCTTTCATTCAGAGAATA 57.915 39.130 0.00 0.00 0.00 1.75
128 129 3.942829 TGCCGTCTTTCATTCAGAGAAT 58.057 40.909 0.00 0.00 0.00 2.40
129 130 3.401033 TGCCGTCTTTCATTCAGAGAA 57.599 42.857 0.00 0.00 0.00 2.87
130 131 3.616956 ATGCCGTCTTTCATTCAGAGA 57.383 42.857 0.00 0.00 0.00 3.10
131 132 4.656041 GAAATGCCGTCTTTCATTCAGAG 58.344 43.478 0.00 0.00 33.70 3.35
132 133 3.125146 CGAAATGCCGTCTTTCATTCAGA 59.875 43.478 0.00 0.00 33.20 3.27
133 134 3.419915 CGAAATGCCGTCTTTCATTCAG 58.580 45.455 0.00 0.00 33.20 3.02
134 135 2.161410 CCGAAATGCCGTCTTTCATTCA 59.839 45.455 0.00 0.00 33.20 2.57
135 136 2.161609 ACCGAAATGCCGTCTTTCATTC 59.838 45.455 0.00 0.00 33.20 2.67
136 137 2.159382 ACCGAAATGCCGTCTTTCATT 58.841 42.857 0.00 0.00 33.20 2.57
137 138 1.821216 ACCGAAATGCCGTCTTTCAT 58.179 45.000 0.00 0.00 33.20 2.57
138 139 1.265635 CAACCGAAATGCCGTCTTTCA 59.734 47.619 0.00 0.00 33.20 2.69
139 140 1.533731 TCAACCGAAATGCCGTCTTTC 59.466 47.619 0.00 0.00 0.00 2.62
140 141 1.600023 TCAACCGAAATGCCGTCTTT 58.400 45.000 0.00 0.00 0.00 2.52
141 142 1.821216 ATCAACCGAAATGCCGTCTT 58.179 45.000 0.00 0.00 0.00 3.01
142 143 2.550978 CTATCAACCGAAATGCCGTCT 58.449 47.619 0.00 0.00 0.00 4.18
143 144 1.597663 CCTATCAACCGAAATGCCGTC 59.402 52.381 0.00 0.00 0.00 4.79
144 145 1.663695 CCTATCAACCGAAATGCCGT 58.336 50.000 0.00 0.00 0.00 5.68
145 146 0.307760 GCCTATCAACCGAAATGCCG 59.692 55.000 0.00 0.00 0.00 5.69
146 147 1.334869 CTGCCTATCAACCGAAATGCC 59.665 52.381 0.00 0.00 0.00 4.40
147 148 2.032178 GTCTGCCTATCAACCGAAATGC 59.968 50.000 0.00 0.00 0.00 3.56
148 149 3.063997 GTGTCTGCCTATCAACCGAAATG 59.936 47.826 0.00 0.00 0.00 2.32
149 150 3.270877 GTGTCTGCCTATCAACCGAAAT 58.729 45.455 0.00 0.00 0.00 2.17
150 151 2.037902 TGTGTCTGCCTATCAACCGAAA 59.962 45.455 0.00 0.00 0.00 3.46
151 152 1.621317 TGTGTCTGCCTATCAACCGAA 59.379 47.619 0.00 0.00 0.00 4.30
152 153 1.262417 TGTGTCTGCCTATCAACCGA 58.738 50.000 0.00 0.00 0.00 4.69
153 154 1.732259 GTTGTGTCTGCCTATCAACCG 59.268 52.381 0.00 0.00 34.31 4.44
154 155 3.003480 GAGTTGTGTCTGCCTATCAACC 58.997 50.000 0.00 0.00 39.05 3.77
155 156 3.681897 CAGAGTTGTGTCTGCCTATCAAC 59.318 47.826 0.00 0.00 37.74 3.18
156 157 3.578282 TCAGAGTTGTGTCTGCCTATCAA 59.422 43.478 0.00 0.00 43.28 2.57
157 158 3.056536 GTCAGAGTTGTGTCTGCCTATCA 60.057 47.826 0.00 0.00 43.28 2.15
158 159 3.516615 GTCAGAGTTGTGTCTGCCTATC 58.483 50.000 0.00 0.00 43.28 2.08
159 160 2.234908 GGTCAGAGTTGTGTCTGCCTAT 59.765 50.000 0.00 0.00 43.28 2.57
160 161 1.618837 GGTCAGAGTTGTGTCTGCCTA 59.381 52.381 0.00 0.00 43.28 3.93
161 162 0.394565 GGTCAGAGTTGTGTCTGCCT 59.605 55.000 0.00 0.00 43.28 4.75
162 163 0.106708 TGGTCAGAGTTGTGTCTGCC 59.893 55.000 0.00 2.54 43.28 4.85
163 164 1.069204 TCTGGTCAGAGTTGTGTCTGC 59.931 52.381 0.00 0.00 43.28 4.26
164 165 3.257873 AGATCTGGTCAGAGTTGTGTCTG 59.742 47.826 6.81 0.00 44.71 3.51
165 166 3.505386 AGATCTGGTCAGAGTTGTGTCT 58.495 45.455 6.81 1.09 41.33 3.41
166 167 3.951775 AGATCTGGTCAGAGTTGTGTC 57.048 47.619 6.81 0.00 41.33 3.67
167 168 3.643320 TGAAGATCTGGTCAGAGTTGTGT 59.357 43.478 0.00 0.00 41.33 3.72
168 169 4.263018 TGAAGATCTGGTCAGAGTTGTG 57.737 45.455 0.00 0.00 41.33 3.33
169 170 4.529769 TGATGAAGATCTGGTCAGAGTTGT 59.470 41.667 0.00 0.00 41.33 3.32
170 171 5.082251 TGATGAAGATCTGGTCAGAGTTG 57.918 43.478 0.00 0.00 41.33 3.16
171 172 5.752036 TTGATGAAGATCTGGTCAGAGTT 57.248 39.130 0.00 3.01 41.33 3.01
172 173 5.954153 ATTGATGAAGATCTGGTCAGAGT 57.046 39.130 0.00 0.00 41.33 3.24
173 174 7.049133 AGAAATTGATGAAGATCTGGTCAGAG 58.951 38.462 0.00 0.00 41.33 3.35
174 175 6.955364 AGAAATTGATGAAGATCTGGTCAGA 58.045 36.000 0.00 2.93 42.37 3.27
175 176 8.728337 TTAGAAATTGATGAAGATCTGGTCAG 57.272 34.615 0.00 0.00 0.00 3.51
176 177 9.170734 CTTTAGAAATTGATGAAGATCTGGTCA 57.829 33.333 0.00 0.00 0.00 4.02
177 178 9.388506 TCTTTAGAAATTGATGAAGATCTGGTC 57.611 33.333 0.00 0.00 0.00 4.02
223 224 7.670140 TCACTCACGGAATAATCCTCATATACT 59.330 37.037 0.00 0.00 44.17 2.12
224 225 7.755822 GTCACTCACGGAATAATCCTCATATAC 59.244 40.741 0.00 0.00 44.17 1.47
225 226 7.093902 GGTCACTCACGGAATAATCCTCATATA 60.094 40.741 0.00 0.00 44.17 0.86
226 227 6.295349 GGTCACTCACGGAATAATCCTCATAT 60.295 42.308 0.00 0.00 44.17 1.78
241 242 2.132762 GTAACAACAGGGTCACTCACG 58.867 52.381 0.00 0.00 0.00 4.35
277 278 6.548251 AGAGGGAGTACTACTTAAGATTGAGC 59.452 42.308 10.09 0.00 0.00 4.26
347 348 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
348 349 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
349 350 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
350 351 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
351 352 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
357 358 9.822185 GAAAAATACTCCCTCCGTAAACTAATA 57.178 33.333 0.00 0.00 0.00 0.98
358 359 8.323567 TGAAAAATACTCCCTCCGTAAACTAAT 58.676 33.333 0.00 0.00 0.00 1.73
359 360 7.678837 TGAAAAATACTCCCTCCGTAAACTAA 58.321 34.615 0.00 0.00 0.00 2.24
360 361 7.243604 TGAAAAATACTCCCTCCGTAAACTA 57.756 36.000 0.00 0.00 0.00 2.24
361 362 6.117975 TGAAAAATACTCCCTCCGTAAACT 57.882 37.500 0.00 0.00 0.00 2.66
362 363 6.806388 TTGAAAAATACTCCCTCCGTAAAC 57.194 37.500 0.00 0.00 0.00 2.01
363 364 7.225725 TCTTTGAAAAATACTCCCTCCGTAAA 58.774 34.615 0.00 0.00 0.00 2.01
364 365 6.771573 TCTTTGAAAAATACTCCCTCCGTAA 58.228 36.000 0.00 0.00 0.00 3.18
365 366 6.363167 TCTTTGAAAAATACTCCCTCCGTA 57.637 37.500 0.00 0.00 0.00 4.02
366 367 5.237236 TCTTTGAAAAATACTCCCTCCGT 57.763 39.130 0.00 0.00 0.00 4.69
367 368 6.569179 TTTCTTTGAAAAATACTCCCTCCG 57.431 37.500 0.00 0.00 0.00 4.63
412 413 6.407979 GCCCTCTCTCACTGAAAGAATAATCT 60.408 42.308 0.00 0.00 37.43 2.40
415 416 4.532126 TGCCCTCTCTCACTGAAAGAATAA 59.468 41.667 0.00 0.00 37.43 1.40
424 425 3.776616 GGAATGCCCTCTCTCACTG 57.223 57.895 0.00 0.00 0.00 3.66
443 444 2.415608 TTGCTCCTCCCTAGCGTCG 61.416 63.158 0.00 0.00 43.11 5.12
445 446 0.905337 AAGTTGCTCCTCCCTAGCGT 60.905 55.000 0.00 0.00 43.11 5.07
447 448 1.279271 TCAAAGTTGCTCCTCCCTAGC 59.721 52.381 0.00 0.00 40.50 3.42
452 453 1.528129 CAGGTCAAAGTTGCTCCTCC 58.472 55.000 5.16 0.00 32.80 4.30
471 472 9.983804 GCTGTTTTAAGTACTATGATAAACACC 57.016 33.333 0.00 0.00 32.52 4.16
479 480 9.719355 TCATCTTTGCTGTTTTAAGTACTATGA 57.281 29.630 0.00 0.00 0.00 2.15
524 530 1.070975 CGCTGCATGAATCGTCTAAGC 60.071 52.381 0.00 0.00 0.00 3.09
602 608 4.887071 TGCTTTACTATGGGGCAAGTTATG 59.113 41.667 0.00 0.00 0.00 1.90
695 721 1.241744 CTGCGCTTTCGTTTGATTCG 58.758 50.000 9.73 0.00 38.14 3.34
853 879 2.730672 GCTTGCACGACACCTAGCG 61.731 63.158 0.00 0.00 0.00 4.26
980 1025 0.878523 TCCCGCGCCGAATAAATCAG 60.879 55.000 0.00 0.00 0.00 2.90
1173 1218 3.119814 TCAATCTGTCAGAGAGCGTGTAC 60.120 47.826 8.82 0.00 32.80 2.90
1197 1242 1.512522 CGGCGATCGACGTGTAACA 60.513 57.895 34.35 0.00 42.51 2.41
1198 1243 3.282740 CGGCGATCGACGTGTAAC 58.717 61.111 34.35 5.85 42.51 2.50
1253 1309 3.041940 CCACGAACGCCTGACCAC 61.042 66.667 0.00 0.00 0.00 4.16
1399 1456 3.096633 TTCACAGGGGAACGCACGT 62.097 57.895 0.00 0.00 46.88 4.49
1421 1478 1.872237 CGAGAACAAGGGACTGCGAAA 60.872 52.381 0.00 0.00 40.86 3.46
1431 1488 2.101209 AAACGCACGCGAGAACAAGG 62.101 55.000 19.66 0.00 42.83 3.61
1435 1492 0.718220 CAAGAAACGCACGCGAGAAC 60.718 55.000 19.66 6.51 42.83 3.01
1534 1594 4.433615 CGTAGATGTACAGCCACTTCATT 58.566 43.478 7.66 0.00 0.00 2.57
1704 1773 6.605471 AACCAAGATACATGTGTCACTCTA 57.395 37.500 22.66 0.00 0.00 2.43
1706 1775 5.122396 GGAAACCAAGATACATGTGTCACTC 59.878 44.000 22.66 10.03 0.00 3.51
1759 1828 1.674980 AGGTCGTCGACTCACCCTC 60.675 63.158 23.69 6.40 32.47 4.30
1769 1838 0.248134 GACCGAGATTCAGGTCGTCG 60.248 60.000 13.25 0.82 46.08 5.12
1774 1843 2.028020 GGTTCAAGACCGAGATTCAGGT 60.028 50.000 3.86 3.86 44.64 4.00
1788 1857 4.735132 TCTCGCCGCCGGTTCAAG 62.735 66.667 4.45 0.00 34.56 3.02
1790 1859 2.228389 TTAATCTCGCCGCCGGTTCA 62.228 55.000 4.45 0.00 34.56 3.18
1791 1860 0.878961 ATTAATCTCGCCGCCGGTTC 60.879 55.000 4.45 0.00 34.56 3.62
1792 1861 0.878961 GATTAATCTCGCCGCCGGTT 60.879 55.000 4.45 0.00 34.56 4.44
1809 1895 3.028850 CAGCATCCCAAAACCATCAGAT 58.971 45.455 0.00 0.00 0.00 2.90
1850 1939 1.954362 CTCCCCTGCACTCCTCGAAG 61.954 65.000 0.00 0.00 0.00 3.79
2019 2108 1.482593 GAGGTTGTCCGTGATCTGGAT 59.517 52.381 9.97 0.00 37.93 3.41
2077 2166 4.342378 GGTCAGAGAATACAGCCATACAGA 59.658 45.833 0.00 0.00 0.00 3.41
2092 2181 1.303615 GACGGGGAGAGGTCAGAGA 59.696 63.158 0.00 0.00 33.41 3.10
2121 2213 1.268032 GGATGATGTTAAGGCGTTGCG 60.268 52.381 0.97 0.00 0.00 4.85
2124 2216 1.014352 GCGGATGATGTTAAGGCGTT 58.986 50.000 0.00 0.00 0.00 4.84
2166 2260 2.056094 AGAAGAAATGCAAGCAACGC 57.944 45.000 0.00 0.00 0.00 4.84
2187 2281 9.447157 ACCTTTGATCTTATCTTTCAGAAGAAG 57.553 33.333 0.00 0.00 44.61 2.85
2205 2299 2.361610 CCAGCCGCCACCTTTGAT 60.362 61.111 0.00 0.00 0.00 2.57
2212 2306 3.670377 GGTTCAACCAGCCGCCAC 61.670 66.667 0.01 0.00 38.42 5.01
2213 2307 3.429372 AAGGTTCAACCAGCCGCCA 62.429 57.895 9.90 0.00 41.95 5.69
2267 2375 0.393077 ATTCTTCGTATCCCGGCCTG 59.607 55.000 0.00 0.00 37.11 4.85
2268 2376 2.005370 TATTCTTCGTATCCCGGCCT 57.995 50.000 0.00 0.00 37.11 5.19
2269 2377 2.825861 TTATTCTTCGTATCCCGGCC 57.174 50.000 0.00 0.00 37.11 6.13
2270 2378 3.678548 GTCATTATTCTTCGTATCCCGGC 59.321 47.826 0.00 0.00 37.11 6.13
2271 2379 3.918591 CGTCATTATTCTTCGTATCCCGG 59.081 47.826 0.00 0.00 37.11 5.73
2272 2380 4.543692 ACGTCATTATTCTTCGTATCCCG 58.456 43.478 0.00 0.00 33.04 5.14
2273 2381 7.935338 TTTACGTCATTATTCTTCGTATCCC 57.065 36.000 0.00 0.00 36.98 3.85
2274 2382 8.433126 CCATTTACGTCATTATTCTTCGTATCC 58.567 37.037 0.00 0.00 36.98 2.59
2296 2404 2.485426 CGCTGTCAAGTTCACATCCATT 59.515 45.455 0.00 0.00 0.00 3.16
2317 2425 2.695359 TGTAGGACCGAACTGCATTTC 58.305 47.619 6.72 6.72 0.00 2.17
2319 2427 3.350219 AATGTAGGACCGAACTGCATT 57.650 42.857 9.95 9.95 43.37 3.56
2323 2442 2.002586 CAGCAATGTAGGACCGAACTG 58.997 52.381 2.28 0.00 0.00 3.16
2402 2529 5.592054 TCATGCTGCTACACTATGTAACTC 58.408 41.667 0.00 0.00 31.67 3.01
2414 2541 5.943706 AGATCAATCAATCATGCTGCTAC 57.056 39.130 0.00 0.00 0.00 3.58
2418 2545 5.529800 TGGTGTAGATCAATCAATCATGCTG 59.470 40.000 0.00 0.00 0.00 4.41
2441 2568 1.135972 GCATACAAAGCGACCACACTG 60.136 52.381 0.00 0.00 0.00 3.66
2448 2575 1.331756 CCCTGATGCATACAAAGCGAC 59.668 52.381 0.00 0.00 33.85 5.19
2461 2588 2.202797 CGCAGTCGTCCCCTGATG 60.203 66.667 0.00 0.00 31.38 3.07
2557 2684 2.203153 GAGGTGTTGCACGGTGGT 60.203 61.111 10.60 0.00 34.83 4.16
2559 2686 1.263217 GTAAAGAGGTGTTGCACGGTG 59.737 52.381 3.15 3.15 34.83 4.94
2562 2689 3.650139 AGTAGTAAAGAGGTGTTGCACG 58.350 45.455 0.00 0.00 34.83 5.34
2624 2751 1.092345 TGCGTGTTAGTGCTGCACAA 61.092 50.000 31.90 20.92 36.74 3.33
2654 2781 2.202987 GCTCCCGATGCTGACCAG 60.203 66.667 0.00 0.00 0.00 4.00
2726 2853 0.751277 TTGGTGGTGTTGGTGAGCAG 60.751 55.000 0.00 0.00 0.00 4.24
2746 2873 2.892640 CTCTTGATCCGGACGCCA 59.107 61.111 6.12 1.93 0.00 5.69
2777 2904 9.705290 ACAAAACTGTTCTTGTCTTTGTTAAAT 57.295 25.926 12.25 0.00 34.27 1.40
2806 2939 6.363167 TTTGGAACGGAGGAAGTATTTCTA 57.637 37.500 0.00 0.00 33.68 2.10
2807 2940 4.903045 TTGGAACGGAGGAAGTATTTCT 57.097 40.909 0.00 0.00 33.68 2.52
2808 2941 6.322491 CAATTTGGAACGGAGGAAGTATTTC 58.678 40.000 0.00 0.00 0.00 2.17
2809 2942 5.336451 GCAATTTGGAACGGAGGAAGTATTT 60.336 40.000 0.00 0.00 0.00 1.40
2810 2943 4.157840 GCAATTTGGAACGGAGGAAGTATT 59.842 41.667 0.00 0.00 0.00 1.89
2811 2944 3.694566 GCAATTTGGAACGGAGGAAGTAT 59.305 43.478 0.00 0.00 0.00 2.12
2812 2945 3.078837 GCAATTTGGAACGGAGGAAGTA 58.921 45.455 0.00 0.00 0.00 2.24
2813 2946 1.886542 GCAATTTGGAACGGAGGAAGT 59.113 47.619 0.00 0.00 0.00 3.01
2814 2947 2.162408 GAGCAATTTGGAACGGAGGAAG 59.838 50.000 0.00 0.00 0.00 3.46
2815 2948 2.159382 GAGCAATTTGGAACGGAGGAA 58.841 47.619 0.00 0.00 0.00 3.36
2816 2949 1.073125 TGAGCAATTTGGAACGGAGGA 59.927 47.619 0.00 0.00 0.00 3.71
2817 2950 1.533625 TGAGCAATTTGGAACGGAGG 58.466 50.000 0.00 0.00 0.00 4.30
2818 2951 2.223112 CGATGAGCAATTTGGAACGGAG 60.223 50.000 0.00 0.00 0.00 4.63
2819 2952 1.737236 CGATGAGCAATTTGGAACGGA 59.263 47.619 0.00 0.00 0.00 4.69
2820 2953 2.178474 CGATGAGCAATTTGGAACGG 57.822 50.000 0.00 0.00 0.00 4.44
2833 2966 6.884096 GAGTATATCCATTTCTGCGATGAG 57.116 41.667 0.00 0.00 0.00 2.90
2842 2975 7.420214 TTGGAACAGAGGGAGTATATCCATTTC 60.420 40.741 0.00 0.00 43.85 2.17
2843 2976 6.389869 TTGGAACAGAGGGAGTATATCCATTT 59.610 38.462 0.00 0.00 43.85 2.32
2844 2977 5.911178 TTGGAACAGAGGGAGTATATCCATT 59.089 40.000 0.00 0.00 43.85 3.16
2846 2979 4.890988 TTGGAACAGAGGGAGTATATCCA 58.109 43.478 0.00 0.00 46.49 3.41
2847 2980 5.888982 TTTGGAACAGAGGGAGTATATCC 57.111 43.478 0.00 0.00 44.60 2.59
2848 2981 8.652290 AGTAATTTGGAACAGAGGGAGTATATC 58.348 37.037 0.00 0.00 42.39 1.63
2849 2982 8.568617 AGTAATTTGGAACAGAGGGAGTATAT 57.431 34.615 0.00 0.00 42.39 0.86
2850 2983 7.201884 CGAGTAATTTGGAACAGAGGGAGTATA 60.202 40.741 0.00 0.00 42.39 1.47
2851 2984 6.407074 CGAGTAATTTGGAACAGAGGGAGTAT 60.407 42.308 0.00 0.00 42.39 2.12
2852 2985 5.105473 CGAGTAATTTGGAACAGAGGGAGTA 60.105 44.000 0.00 0.00 42.39 2.59
2853 2986 4.322801 CGAGTAATTTGGAACAGAGGGAGT 60.323 45.833 0.00 0.00 42.39 3.85
2854 2987 4.184629 CGAGTAATTTGGAACAGAGGGAG 58.815 47.826 0.00 0.00 42.39 4.30
2855 2988 3.581332 ACGAGTAATTTGGAACAGAGGGA 59.419 43.478 0.00 0.00 42.39 4.20
2856 2989 3.933332 GACGAGTAATTTGGAACAGAGGG 59.067 47.826 0.00 0.00 42.39 4.30
2857 2990 3.612860 CGACGAGTAATTTGGAACAGAGG 59.387 47.826 0.00 0.00 42.39 3.69
2858 2991 3.060895 GCGACGAGTAATTTGGAACAGAG 59.939 47.826 0.00 0.00 42.39 3.35
2859 2992 2.991190 GCGACGAGTAATTTGGAACAGA 59.009 45.455 0.00 0.00 42.39 3.41
2860 2993 2.734606 TGCGACGAGTAATTTGGAACAG 59.265 45.455 0.00 0.00 42.39 3.16
2861 2994 2.734606 CTGCGACGAGTAATTTGGAACA 59.265 45.455 0.00 0.00 0.00 3.18
2862 2995 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2863 2996 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2864 2997 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2865 2998 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2866 2999 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2867 3000 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2868 3001 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2869 3002 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2870 3003 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2871 3004 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2872 3005 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2873 3006 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2874 3007 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2875 3008 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2876 3009 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2877 3010 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2878 3011 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2879 3012 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2904 3037 9.730705 CAGGTATGGATGTATCAAGATGTATTT 57.269 33.333 0.00 0.00 0.00 1.40
2905 3038 8.884323 ACAGGTATGGATGTATCAAGATGTATT 58.116 33.333 0.00 0.00 0.00 1.89
2906 3039 8.316946 CACAGGTATGGATGTATCAAGATGTAT 58.683 37.037 0.00 0.00 0.00 2.29
2907 3040 7.508977 TCACAGGTATGGATGTATCAAGATGTA 59.491 37.037 0.00 0.00 0.00 2.29
2908 3041 6.327365 TCACAGGTATGGATGTATCAAGATGT 59.673 38.462 0.00 0.00 0.00 3.06
2909 3042 6.648310 GTCACAGGTATGGATGTATCAAGATG 59.352 42.308 0.00 0.00 0.00 2.90
2910 3043 6.327365 TGTCACAGGTATGGATGTATCAAGAT 59.673 38.462 0.00 0.00 0.00 2.40
2911 3044 5.660864 TGTCACAGGTATGGATGTATCAAGA 59.339 40.000 0.00 0.00 0.00 3.02
2912 3045 5.917462 TGTCACAGGTATGGATGTATCAAG 58.083 41.667 0.00 0.00 0.00 3.02
2913 3046 5.948742 TGTCACAGGTATGGATGTATCAA 57.051 39.130 0.00 0.00 0.00 2.57
2914 3047 5.425217 ACTTGTCACAGGTATGGATGTATCA 59.575 40.000 0.00 0.00 0.00 2.15
2915 3048 5.918608 ACTTGTCACAGGTATGGATGTATC 58.081 41.667 0.00 0.00 0.00 2.24
2916 3049 5.957771 ACTTGTCACAGGTATGGATGTAT 57.042 39.130 0.00 0.00 0.00 2.29
2917 3050 6.860790 TTACTTGTCACAGGTATGGATGTA 57.139 37.500 0.00 0.00 0.00 2.29
2918 3051 5.755409 TTACTTGTCACAGGTATGGATGT 57.245 39.130 0.00 0.00 0.00 3.06
2919 3052 6.018751 CGAATTACTTGTCACAGGTATGGATG 60.019 42.308 0.00 0.00 0.00 3.51
2920 3053 6.049149 CGAATTACTTGTCACAGGTATGGAT 58.951 40.000 0.00 0.00 0.00 3.41
2921 3054 5.416083 CGAATTACTTGTCACAGGTATGGA 58.584 41.667 0.00 0.00 0.00 3.41
2922 3055 4.570772 CCGAATTACTTGTCACAGGTATGG 59.429 45.833 0.00 0.00 0.00 2.74
2923 3056 5.416083 TCCGAATTACTTGTCACAGGTATG 58.584 41.667 0.00 0.00 0.00 2.39
2924 3057 5.670792 TCCGAATTACTTGTCACAGGTAT 57.329 39.130 0.00 0.00 0.00 2.73
2925 3058 5.232463 GTTCCGAATTACTTGTCACAGGTA 58.768 41.667 0.00 0.00 0.00 3.08
2926 3059 4.062991 GTTCCGAATTACTTGTCACAGGT 58.937 43.478 0.00 0.00 0.00 4.00
2927 3060 3.122948 CGTTCCGAATTACTTGTCACAGG 59.877 47.826 0.00 0.00 0.00 4.00
2928 3061 3.122948 CCGTTCCGAATTACTTGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
2929 3062 3.061322 CCGTTCCGAATTACTTGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
2930 3063 3.319755 TCCGTTCCGAATTACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
2931 3064 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2932 3065 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2933 3066 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2934 3067 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2935 3068 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2936 3069 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2937 3070 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2938 3071 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2939 3072 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
2940 3073 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
2941 3074 1.308069 CGTACTCCCTCCGTTCCGAA 61.308 60.000 0.00 0.00 0.00 4.30
2942 3075 1.746615 CGTACTCCCTCCGTTCCGA 60.747 63.158 0.00 0.00 0.00 4.55
2943 3076 0.744414 TACGTACTCCCTCCGTTCCG 60.744 60.000 0.00 0.00 36.12 4.30
2944 3077 1.020437 CTACGTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 36.12 3.62
2945 3078 1.743996 ACTACGTACTCCCTCCGTTC 58.256 55.000 0.00 0.00 36.12 3.95
2946 3079 3.350219 TTACTACGTACTCCCTCCGTT 57.650 47.619 0.00 0.00 36.12 4.44
2947 3080 3.350219 TTTACTACGTACTCCCTCCGT 57.650 47.619 0.00 0.00 38.53 4.69
2948 3081 4.082787 TGTTTTTACTACGTACTCCCTCCG 60.083 45.833 0.00 0.00 0.00 4.63
2949 3082 5.047731 AGTGTTTTTACTACGTACTCCCTCC 60.048 44.000 0.00 0.00 0.00 4.30
2950 3083 6.018589 AGTGTTTTTACTACGTACTCCCTC 57.981 41.667 0.00 0.00 0.00 4.30
2951 3084 5.772169 AGAGTGTTTTTACTACGTACTCCCT 59.228 40.000 5.87 0.00 35.01 4.20
2952 3085 6.018589 AGAGTGTTTTTACTACGTACTCCC 57.981 41.667 5.87 0.00 35.01 4.30
2953 3086 6.580416 GTGAGAGTGTTTTTACTACGTACTCC 59.420 42.308 5.87 0.39 35.01 3.85
2954 3087 7.323177 CAGTGAGAGTGTTTTTACTACGTACTC 59.677 40.741 0.00 0.00 34.75 2.59
2955 3088 7.137426 CAGTGAGAGTGTTTTTACTACGTACT 58.863 38.462 0.00 0.00 0.00 2.73
2956 3089 6.129247 GCAGTGAGAGTGTTTTTACTACGTAC 60.129 42.308 0.00 0.00 0.00 3.67
2957 3090 5.916883 GCAGTGAGAGTGTTTTTACTACGTA 59.083 40.000 0.00 0.00 0.00 3.57
2958 3091 4.743644 GCAGTGAGAGTGTTTTTACTACGT 59.256 41.667 0.00 0.00 0.00 3.57
2959 3092 4.743151 TGCAGTGAGAGTGTTTTTACTACG 59.257 41.667 0.00 0.00 0.00 3.51
2960 3093 6.036735 TGTTGCAGTGAGAGTGTTTTTACTAC 59.963 38.462 0.00 0.00 0.00 2.73
3004 3137 2.260869 CCCACCCTGAAGCAACACG 61.261 63.158 0.00 0.00 0.00 4.49
3147 3280 2.939460 AAAATGCAGTAATCCGGCAC 57.061 45.000 0.00 0.00 40.83 5.01
3148 3281 3.129638 GGTAAAAATGCAGTAATCCGGCA 59.870 43.478 0.00 0.00 42.43 5.69
3149 3282 3.702330 GGTAAAAATGCAGTAATCCGGC 58.298 45.455 0.00 0.00 0.00 6.13
3150 3283 3.375922 ACGGTAAAAATGCAGTAATCCGG 59.624 43.478 18.44 0.00 39.73 5.14
3151 3284 4.331717 AGACGGTAAAAATGCAGTAATCCG 59.668 41.667 14.75 14.75 40.94 4.18
3152 3285 5.585047 AGAGACGGTAAAAATGCAGTAATCC 59.415 40.000 0.00 0.00 0.00 3.01
3153 3286 6.312918 TCAGAGACGGTAAAAATGCAGTAATC 59.687 38.462 0.00 0.00 0.00 1.75
3154 3287 6.170506 TCAGAGACGGTAAAAATGCAGTAAT 58.829 36.000 0.00 0.00 0.00 1.89
3155 3288 5.543714 TCAGAGACGGTAAAAATGCAGTAA 58.456 37.500 0.00 0.00 0.00 2.24
3156 3289 5.142061 TCAGAGACGGTAAAAATGCAGTA 57.858 39.130 0.00 0.00 0.00 2.74
3157 3290 4.002906 TCAGAGACGGTAAAAATGCAGT 57.997 40.909 0.00 0.00 0.00 4.40
3158 3291 5.551760 ATTCAGAGACGGTAAAAATGCAG 57.448 39.130 0.00 0.00 0.00 4.41
3159 3292 4.092821 CGATTCAGAGACGGTAAAAATGCA 59.907 41.667 0.00 0.00 0.00 3.96
3160 3293 4.092968 ACGATTCAGAGACGGTAAAAATGC 59.907 41.667 0.00 0.00 0.00 3.56
3161 3294 5.120208 ACACGATTCAGAGACGGTAAAAATG 59.880 40.000 0.00 0.00 0.00 2.32
3162 3295 5.120208 CACACGATTCAGAGACGGTAAAAAT 59.880 40.000 0.00 0.00 0.00 1.82
3163 3296 4.446385 CACACGATTCAGAGACGGTAAAAA 59.554 41.667 0.00 0.00 0.00 1.94
3164 3297 3.985279 CACACGATTCAGAGACGGTAAAA 59.015 43.478 0.00 0.00 0.00 1.52
3165 3298 3.253921 TCACACGATTCAGAGACGGTAAA 59.746 43.478 0.00 0.00 0.00 2.01
3166 3299 2.815503 TCACACGATTCAGAGACGGTAA 59.184 45.455 0.00 0.00 0.00 2.85
3167 3300 2.161012 GTCACACGATTCAGAGACGGTA 59.839 50.000 0.00 0.00 0.00 4.02
3168 3301 1.068472 GTCACACGATTCAGAGACGGT 60.068 52.381 0.00 0.00 0.00 4.83
3169 3302 1.618861 GTCACACGATTCAGAGACGG 58.381 55.000 0.00 0.00 0.00 4.79
3192 3330 2.489938 TAATTCACGCTTCAGCCCTT 57.510 45.000 0.00 0.00 37.91 3.95
3195 3333 2.488153 AGGTTTAATTCACGCTTCAGCC 59.512 45.455 0.00 0.00 37.91 4.85
3196 3334 3.058224 ACAGGTTTAATTCACGCTTCAGC 60.058 43.478 0.00 0.00 37.78 4.26
3197 3335 4.024048 ACACAGGTTTAATTCACGCTTCAG 60.024 41.667 0.00 0.00 0.00 3.02
3211 3349 1.525995 CGCCCAGACACACAGGTTT 60.526 57.895 0.00 0.00 0.00 3.27
3215 3353 3.349006 GCACGCCCAGACACACAG 61.349 66.667 0.00 0.00 0.00 3.66
3222 3360 3.535629 CTTGGTCTGCACGCCCAGA 62.536 63.158 1.83 1.83 39.42 3.86
3223 3361 3.052082 CTTGGTCTGCACGCCCAG 61.052 66.667 0.00 0.00 0.00 4.45
3423 3561 3.808656 GGGACGACGACTCCGACC 61.809 72.222 0.00 0.00 40.20 4.79
3489 3627 2.792749 CAAACAAACAGACGGTGGAAC 58.207 47.619 0.00 0.00 0.00 3.62
3595 3744 6.097554 TGTGAAAACAGAGCCCAGAATAAAAA 59.902 34.615 0.00 0.00 0.00 1.94
3596 3745 5.596361 TGTGAAAACAGAGCCCAGAATAAAA 59.404 36.000 0.00 0.00 0.00 1.52
3597 3746 5.136828 TGTGAAAACAGAGCCCAGAATAAA 58.863 37.500 0.00 0.00 0.00 1.40
3598 3747 4.724399 TGTGAAAACAGAGCCCAGAATAA 58.276 39.130 0.00 0.00 0.00 1.40
3599 3748 4.365514 TGTGAAAACAGAGCCCAGAATA 57.634 40.909 0.00 0.00 0.00 1.75
3600 3749 3.228188 TGTGAAAACAGAGCCCAGAAT 57.772 42.857 0.00 0.00 0.00 2.40
3601 3750 2.727123 TGTGAAAACAGAGCCCAGAA 57.273 45.000 0.00 0.00 0.00 3.02
3602 3751 2.727123 TTGTGAAAACAGAGCCCAGA 57.273 45.000 0.00 0.00 0.00 3.86
3603 3752 4.701651 TCATATTGTGAAAACAGAGCCCAG 59.298 41.667 0.00 0.00 32.78 4.45
3632 3781 5.007528 GTGTTGCCAAAAACATTTGCACTAT 59.992 36.000 0.00 0.00 41.81 2.12
3633 3782 4.331168 GTGTTGCCAAAAACATTTGCACTA 59.669 37.500 0.00 0.00 41.81 2.74
3660 3810 1.885233 TCCATGCGAGCAACAAATCAA 59.115 42.857 0.57 0.00 0.00 2.57
3687 3837 3.973425 AGGCAACATCTCTAAGGCAATT 58.027 40.909 0.00 0.00 41.41 2.32
3689 3839 4.164030 TGATAGGCAACATCTCTAAGGCAA 59.836 41.667 0.00 0.00 41.41 4.52
3692 3842 7.814264 AAAATGATAGGCAACATCTCTAAGG 57.186 36.000 0.00 0.00 41.41 2.69
3740 3891 6.070824 TGTGACATGTTATGAGACTACCACAT 60.071 38.462 0.00 0.00 0.00 3.21
3741 3892 5.245075 TGTGACATGTTATGAGACTACCACA 59.755 40.000 0.00 2.02 0.00 4.17
3742 3893 5.720202 TGTGACATGTTATGAGACTACCAC 58.280 41.667 0.00 0.00 0.00 4.16
3743 3894 5.993748 TGTGACATGTTATGAGACTACCA 57.006 39.130 0.00 0.00 0.00 3.25
3782 3946 4.696899 AATGACACTCACAGCATCATTG 57.303 40.909 0.00 0.00 38.31 2.82
3805 3969 5.560966 AGTTATATTGTGGAAAAGCACCG 57.439 39.130 0.00 0.00 0.00 4.94
3819 3983 4.705023 ACCCTTGCGCAAAGAAGTTATATT 59.295 37.500 25.01 0.00 38.24 1.28
3825 3989 1.455383 CCACCCTTGCGCAAAGAAGT 61.455 55.000 25.01 15.27 38.24 3.01
3828 3992 1.600636 CTCCACCCTTGCGCAAAGA 60.601 57.895 25.01 14.01 38.24 2.52
3834 3998 2.107950 TGTAAATCTCCACCCTTGCG 57.892 50.000 0.00 0.00 0.00 4.85
3837 4001 5.688807 CAGATCATGTAAATCTCCACCCTT 58.311 41.667 0.00 0.00 31.05 3.95
3839 4003 3.817647 GCAGATCATGTAAATCTCCACCC 59.182 47.826 0.00 0.00 31.05 4.61
3857 4021 8.363390 TGGTGTGTTGATATTAAAATTTGCAGA 58.637 29.630 0.00 0.00 0.00 4.26
3858 4022 8.434661 GTGGTGTGTTGATATTAAAATTTGCAG 58.565 33.333 0.00 0.00 0.00 4.41
3861 4025 9.254133 TGTGTGGTGTGTTGATATTAAAATTTG 57.746 29.630 0.00 0.00 0.00 2.32
3875 4039 5.126222 TCATGTATTGTTTGTGTGGTGTGTT 59.874 36.000 0.00 0.00 0.00 3.32
3883 4047 7.067615 TGTTGGTTACTCATGTATTGTTTGTGT 59.932 33.333 0.00 0.00 0.00 3.72
3890 4054 9.161629 TCAATAGTGTTGGTTACTCATGTATTG 57.838 33.333 0.00 0.00 0.00 1.90
3896 4060 6.374417 ACCTCAATAGTGTTGGTTACTCAT 57.626 37.500 0.00 0.00 31.82 2.90
3897 4061 5.818678 ACCTCAATAGTGTTGGTTACTCA 57.181 39.130 0.00 0.00 31.82 3.41
3906 4070 8.554490 AGGAGTATGATAACCTCAATAGTGTT 57.446 34.615 0.00 0.00 37.44 3.32
4022 9325 2.281539 TATGATGGGATGCTTGGCAG 57.718 50.000 0.00 0.00 43.65 4.85
4030 9333 5.599656 ACAAACCCTCATTTATGATGGGATG 59.400 40.000 22.93 21.26 44.04 3.51
4045 9348 2.858745 TGCAACTAGGAACAAACCCTC 58.141 47.619 0.00 0.00 35.30 4.30
4057 9360 6.371548 TCCTTATGCTTAACTGTTGCAACTAG 59.628 38.462 28.61 23.93 40.24 2.57
4087 9390 8.523523 ACCCGTTAAAACTAACAAAATAATGC 57.476 30.769 0.00 0.00 0.00 3.56
4089 9392 8.980610 GCAACCCGTTAAAACTAACAAAATAAT 58.019 29.630 0.00 0.00 0.00 1.28
4096 9399 5.579564 AAAGCAACCCGTTAAAACTAACA 57.420 34.783 0.00 0.00 0.00 2.41
4119 9422 9.418045 CGATTAAGTTGGGACATTTTTAATGTT 57.582 29.630 6.51 0.00 39.30 2.71
4160 9463 6.070481 TGGACAAGTATTCTGCCTAACATGTA 60.070 38.462 0.00 0.00 0.00 2.29
4294 9599 4.609336 GCTGAAACAAGTAGAGCGACAAAG 60.609 45.833 0.00 0.00 0.00 2.77
4302 9607 7.301054 CCAATAGTTTGCTGAAACAAGTAGAG 58.699 38.462 2.87 0.00 43.51 2.43
4370 9675 7.487189 CAGATTGCAATTTTCCTAACATCAGTC 59.513 37.037 14.33 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.