Multiple sequence alignment - TraesCS1A01G364200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G364200 chr1A 100.000 6028 0 0 1 6028 544204976 544198949 0.000000e+00 11132.0
1 TraesCS1A01G364200 chr1A 87.500 120 9 6 2699 2813 544202210 544202092 3.790000e-27 134.0
2 TraesCS1A01G364200 chr1A 87.500 120 9 6 2767 2885 544202278 544202164 3.790000e-27 134.0
3 TraesCS1A01G364200 chr1A 91.667 48 1 3 2839 2885 544202279 544202234 5.040000e-06 63.9
4 TraesCS1A01G364200 chr1D 90.608 3588 205 47 430 3973 448433478 448429979 0.000000e+00 4638.0
5 TraesCS1A01G364200 chr1D 91.224 1732 88 23 4027 5710 448429979 448428264 0.000000e+00 2298.0
6 TraesCS1A01G364200 chr1D 86.667 120 11 4 2699 2813 448431172 448431053 1.760000e-25 128.0
7 TraesCS1A01G364200 chr1D 95.556 45 1 1 5807 5851 448425061 448425018 3.010000e-08 71.3
8 TraesCS1A01G364200 chr1B 92.171 2810 134 33 2478 5259 614332993 614330242 0.000000e+00 3892.0
9 TraesCS1A01G364200 chr1B 87.532 1540 99 30 433 1935 614334909 614333426 0.000000e+00 1694.0
10 TraesCS1A01G364200 chr1B 92.290 441 27 3 1994 2430 614333424 614332987 2.390000e-173 619.0
11 TraesCS1A01G364200 chr1B 83.406 458 38 9 5262 5692 614330072 614329626 2.040000e-104 390.0
12 TraesCS1A01G364200 chr1B 84.514 381 32 9 65 439 614335393 614335034 9.610000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G364200 chr1A 544198949 544204976 6027 True 2865.975 11132 91.66675 1 6028 4 chr1A.!!$R1 6027
1 TraesCS1A01G364200 chr1D 448425018 448433478 8460 True 1783.825 4638 91.01375 430 5851 4 chr1D.!!$R1 5421
2 TraesCS1A01G364200 chr1B 614329626 614335393 5767 True 1389.200 3892 87.98260 65 5692 5 chr1B.!!$R1 5627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.036765 TACATGGCCACCGAGACAAC 60.037 55.000 8.16 0.0 0.00 3.32 F
325 328 0.106967 TGTTGGCAGGTGTTGTGCTA 60.107 50.000 0.00 0.0 40.97 3.49 F
1958 2145 0.542467 TTGCCATGATTGGGTGCAGT 60.542 50.000 0.00 0.0 43.84 4.40 F
2291 2479 1.536418 TCACACCTCCCTCACCCTG 60.536 63.158 0.00 0.0 0.00 4.45 F
3577 3781 1.290203 ATGCGCACGTTTGATAGGAG 58.710 50.000 14.90 0.0 0.00 3.69 F
4432 4667 1.452953 TACGCCGGTATCCTCAGCAG 61.453 60.000 1.90 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1299 1452 1.369209 CTGCGCTCCAACACAAACG 60.369 57.895 9.73 0.0 0.00 3.60 R
2264 2452 0.765510 GGGAGGTGTGACTGACCTTT 59.234 55.000 0.00 0.0 44.28 3.11 R
3561 3765 0.924090 GAGCTCCTATCAAACGTGCG 59.076 55.000 0.87 0.0 0.00 5.34 R
4283 4518 1.342076 TGCGTCTCTTCCAGGGACTAT 60.342 52.381 2.36 0.0 36.02 2.12 R
4710 4945 0.038166 TCCTGGGGAAACTGATGCAC 59.962 55.000 0.00 0.0 0.00 4.57 R
5887 9446 0.314302 AACGAGGACAGTCGAAGGTG 59.686 55.000 0.00 0.0 42.85 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.540354 AGGTTCCCCTCCAGGATTT 57.460 52.632 0.00 0.00 35.62 2.17
19 20 1.773541 AGGTTCCCCTCCAGGATTTT 58.226 50.000 0.00 0.00 35.62 1.82
20 21 1.359130 AGGTTCCCCTCCAGGATTTTG 59.641 52.381 0.00 0.00 35.62 2.44
21 22 1.357761 GGTTCCCCTCCAGGATTTTGA 59.642 52.381 0.00 0.00 38.24 2.69
22 23 2.225267 GGTTCCCCTCCAGGATTTTGAA 60.225 50.000 0.00 0.00 38.24 2.69
23 24 2.826128 GTTCCCCTCCAGGATTTTGAAC 59.174 50.000 0.00 0.00 38.24 3.18
24 25 2.358258 TCCCCTCCAGGATTTTGAACT 58.642 47.619 0.00 0.00 38.24 3.01
25 26 2.308866 TCCCCTCCAGGATTTTGAACTC 59.691 50.000 0.00 0.00 38.24 3.01
26 27 2.621668 CCCCTCCAGGATTTTGAACTCC 60.622 54.545 0.00 0.00 38.24 3.85
27 28 2.310052 CCCTCCAGGATTTTGAACTCCT 59.690 50.000 0.00 0.00 42.75 3.69
28 29 3.523564 CCCTCCAGGATTTTGAACTCCTA 59.476 47.826 2.73 0.00 39.95 2.94
29 30 4.166919 CCCTCCAGGATTTTGAACTCCTAT 59.833 45.833 2.73 0.00 39.95 2.57
30 31 5.128919 CCTCCAGGATTTTGAACTCCTATG 58.871 45.833 2.73 0.00 39.95 2.23
31 32 5.339530 CCTCCAGGATTTTGAACTCCTATGT 60.340 44.000 2.73 0.00 39.95 2.29
32 33 5.500234 TCCAGGATTTTGAACTCCTATGTG 58.500 41.667 2.73 0.00 39.95 3.21
33 34 5.014123 TCCAGGATTTTGAACTCCTATGTGT 59.986 40.000 2.73 0.00 39.95 3.72
34 35 6.214615 TCCAGGATTTTGAACTCCTATGTGTA 59.785 38.462 2.73 0.00 39.95 2.90
35 36 6.884295 CCAGGATTTTGAACTCCTATGTGTAA 59.116 38.462 2.73 0.00 39.95 2.41
36 37 7.393234 CCAGGATTTTGAACTCCTATGTGTAAA 59.607 37.037 2.73 0.00 39.95 2.01
37 38 8.792633 CAGGATTTTGAACTCCTATGTGTAAAA 58.207 33.333 2.73 0.00 39.95 1.52
38 39 9.533831 AGGATTTTGAACTCCTATGTGTAAAAT 57.466 29.630 1.19 0.00 40.15 1.82
62 63 9.893305 AATAAATCAAAGAACTACAACCGAAAG 57.107 29.630 0.00 0.00 0.00 2.62
63 64 7.562454 AAATCAAAGAACTACAACCGAAAGA 57.438 32.000 0.00 0.00 0.00 2.52
72 73 2.277084 ACAACCGAAAGACGCCATATC 58.723 47.619 0.00 0.00 41.07 1.63
83 84 1.338337 ACGCCATATCCAACTCTCTCG 59.662 52.381 0.00 0.00 0.00 4.04
86 87 3.648009 GCCATATCCAACTCTCTCGAAG 58.352 50.000 0.00 0.00 0.00 3.79
90 91 6.341316 CCATATCCAACTCTCTCGAAGAAAA 58.659 40.000 0.00 0.00 34.09 2.29
91 92 6.818644 CCATATCCAACTCTCTCGAAGAAAAA 59.181 38.462 0.00 0.00 34.09 1.94
98 99 8.012241 CCAACTCTCTCGAAGAAAAAGTAAATG 58.988 37.037 0.00 0.00 34.09 2.32
99 100 7.123160 ACTCTCTCGAAGAAAAAGTAAATGC 57.877 36.000 0.00 0.00 34.09 3.56
138 139 0.036765 TACATGGCCACCGAGACAAC 60.037 55.000 8.16 0.00 0.00 3.32
139 140 1.302431 CATGGCCACCGAGACAACA 60.302 57.895 8.16 0.00 0.00 3.33
140 141 0.677731 CATGGCCACCGAGACAACAT 60.678 55.000 8.16 0.00 0.00 2.71
141 142 0.908910 ATGGCCACCGAGACAACATA 59.091 50.000 8.16 0.00 0.00 2.29
142 143 0.036765 TGGCCACCGAGACAACATAC 60.037 55.000 0.00 0.00 0.00 2.39
143 144 0.036765 GGCCACCGAGACAACATACA 60.037 55.000 0.00 0.00 0.00 2.29
144 145 1.406887 GGCCACCGAGACAACATACAT 60.407 52.381 0.00 0.00 0.00 2.29
145 146 2.159014 GGCCACCGAGACAACATACATA 60.159 50.000 0.00 0.00 0.00 2.29
146 147 2.864343 GCCACCGAGACAACATACATAC 59.136 50.000 0.00 0.00 0.00 2.39
147 148 3.677700 GCCACCGAGACAACATACATACA 60.678 47.826 0.00 0.00 0.00 2.29
148 149 3.863424 CCACCGAGACAACATACATACAC 59.137 47.826 0.00 0.00 0.00 2.90
149 150 3.863424 CACCGAGACAACATACATACACC 59.137 47.826 0.00 0.00 0.00 4.16
150 151 3.512329 ACCGAGACAACATACATACACCA 59.488 43.478 0.00 0.00 0.00 4.17
151 152 4.161565 ACCGAGACAACATACATACACCAT 59.838 41.667 0.00 0.00 0.00 3.55
152 153 5.361571 ACCGAGACAACATACATACACCATA 59.638 40.000 0.00 0.00 0.00 2.74
153 154 6.041637 ACCGAGACAACATACATACACCATAT 59.958 38.462 0.00 0.00 0.00 1.78
161 162 7.328404 ACATACATACACCATATGGGAATGA 57.672 36.000 27.01 16.78 41.15 2.57
164 165 6.959639 ACATACACCATATGGGAATGAAAC 57.040 37.500 27.01 0.00 41.15 2.78
226 229 9.935241 AACATTTGCATCTATATCGTCTAATCT 57.065 29.630 0.00 0.00 0.00 2.40
241 244 9.667107 ATCGTCTAATCTTTTGGAAGTCATAAA 57.333 29.630 0.00 0.00 34.41 1.40
260 263 9.649167 GTCATAAAACTAGTTAGCTTGTTCCTA 57.351 33.333 8.92 3.43 39.16 2.94
266 269 6.388278 ACTAGTTAGCTTGTTCCTAGAAACG 58.612 40.000 0.00 0.00 31.66 3.60
288 291 4.907010 CGTTTTATGCTTTAAGTTGCGTCA 59.093 37.500 0.00 0.00 0.00 4.35
323 326 1.066257 CTGTTGGCAGGTGTTGTGC 59.934 57.895 0.00 0.00 39.01 4.57
325 328 0.106967 TGTTGGCAGGTGTTGTGCTA 60.107 50.000 0.00 0.00 40.97 3.49
342 345 3.686241 GTGCTATGTTGCTCATCTGTTCA 59.314 43.478 0.00 0.00 37.91 3.18
343 346 3.686241 TGCTATGTTGCTCATCTGTTCAC 59.314 43.478 0.00 0.00 37.91 3.18
346 353 4.761235 ATGTTGCTCATCTGTTCACTTG 57.239 40.909 0.00 0.00 29.76 3.16
348 355 2.880890 GTTGCTCATCTGTTCACTTGGT 59.119 45.455 0.00 0.00 0.00 3.67
350 357 2.079925 GCTCATCTGTTCACTTGGTCC 58.920 52.381 0.00 0.00 0.00 4.46
353 360 1.056660 ATCTGTTCACTTGGTCCGGT 58.943 50.000 0.00 0.00 0.00 5.28
368 375 0.946221 CCGGTGATATCGCTGCCTTC 60.946 60.000 18.07 0.00 0.00 3.46
371 378 0.946221 GTGATATCGCTGCCTTCGGG 60.946 60.000 9.07 0.00 38.37 5.14
383 390 0.881796 CCTTCGGGCCTTCTGTTTTC 59.118 55.000 0.84 0.00 0.00 2.29
392 399 3.804325 GGCCTTCTGTTTTCTTTTTCTGC 59.196 43.478 0.00 0.00 0.00 4.26
416 423 6.350277 GCTAGTAGTCTGTATGAACCAGTTGT 60.350 42.308 0.00 0.00 0.00 3.32
417 424 6.420913 AGTAGTCTGTATGAACCAGTTGTT 57.579 37.500 0.00 0.00 40.81 2.83
420 427 6.619801 AGTCTGTATGAACCAGTTGTTTTC 57.380 37.500 0.00 0.00 37.29 2.29
423 430 5.763204 TCTGTATGAACCAGTTGTTTTCTCC 59.237 40.000 0.00 0.00 37.29 3.71
456 594 3.125316 CGTAGATGAAAACAAGAGGTGCC 59.875 47.826 0.00 0.00 0.00 5.01
457 595 3.228188 AGATGAAAACAAGAGGTGCCA 57.772 42.857 0.00 0.00 0.00 4.92
461 599 2.622942 TGAAAACAAGAGGTGCCATGAC 59.377 45.455 0.00 0.00 0.00 3.06
462 600 2.363306 AAACAAGAGGTGCCATGACA 57.637 45.000 0.00 0.00 0.00 3.58
467 605 3.244875 ACAAGAGGTGCCATGACATTACA 60.245 43.478 0.00 0.00 0.00 2.41
472 610 4.917385 AGGTGCCATGACATTACAAGTAA 58.083 39.130 0.00 0.00 0.00 2.24
475 613 3.687212 TGCCATGACATTACAAGTAACGG 59.313 43.478 0.00 0.00 0.00 4.44
502 640 0.742990 CTCCGCTCCGTGCCAAAATA 60.743 55.000 0.00 0.00 38.78 1.40
508 646 2.945668 GCTCCGTGCCAAAATATTCTCT 59.054 45.455 0.00 0.00 35.15 3.10
514 652 4.560035 CGTGCCAAAATATTCTCTTGCAAG 59.440 41.667 20.81 20.81 0.00 4.01
515 653 5.473039 GTGCCAAAATATTCTCTTGCAAGT 58.527 37.500 25.19 9.35 0.00 3.16
516 654 5.574443 GTGCCAAAATATTCTCTTGCAAGTC 59.426 40.000 25.19 0.00 0.00 3.01
517 655 5.105063 GCCAAAATATTCTCTTGCAAGTCC 58.895 41.667 25.19 0.00 0.00 3.85
525 663 9.692325 AATATTCTCTTGCAAGTCCTTATCTTT 57.308 29.630 25.19 7.62 0.00 2.52
654 795 1.339438 ACCACATCACACTCATCCAGC 60.339 52.381 0.00 0.00 0.00 4.85
655 796 1.339342 CCACATCACACTCATCCAGCA 60.339 52.381 0.00 0.00 0.00 4.41
664 805 3.571401 ACACTCATCCAGCAAGAAAAAGG 59.429 43.478 0.00 0.00 0.00 3.11
691 832 0.896923 TCATGTGGCCCATTTCTTGC 59.103 50.000 0.00 0.00 0.00 4.01
720 861 2.622942 TCAAAGTTCATTGTGAGCCACC 59.377 45.455 3.33 0.00 32.73 4.61
746 887 3.916184 GGTCTGAACCCAGGGGAA 58.084 61.111 11.37 0.00 39.93 3.97
747 888 2.160646 GGTCTGAACCCAGGGGAAA 58.839 57.895 11.37 0.00 39.93 3.13
774 915 4.705482 GGCATAAACCCAGCCCAT 57.295 55.556 0.00 0.00 42.58 4.00
775 916 2.126951 GGCATAAACCCAGCCCATG 58.873 57.895 0.00 0.00 42.58 3.66
841 982 4.281657 CCTCTCCCTTTTCCCCTATTTTG 58.718 47.826 0.00 0.00 0.00 2.44
863 1004 5.801380 TGCTCCGACTATTATTATTTCCCC 58.199 41.667 0.00 0.00 0.00 4.81
891 1032 3.075005 TCCTCGCTTTCTCCCCCG 61.075 66.667 0.00 0.00 0.00 5.73
907 1048 4.148230 CGTCACGGAAGGAACGAG 57.852 61.111 0.00 0.00 43.03 4.18
908 1049 1.443872 CGTCACGGAAGGAACGAGG 60.444 63.158 0.00 0.00 43.03 4.63
909 1050 1.737008 GTCACGGAAGGAACGAGGC 60.737 63.158 0.00 0.00 34.93 4.70
910 1051 2.204461 TCACGGAAGGAACGAGGCA 61.204 57.895 0.00 0.00 34.93 4.75
911 1052 1.738099 CACGGAAGGAACGAGGCAG 60.738 63.158 0.00 0.00 34.93 4.85
912 1053 2.125512 CGGAAGGAACGAGGCAGG 60.126 66.667 0.00 0.00 0.00 4.85
913 1054 2.436824 GGAAGGAACGAGGCAGGC 60.437 66.667 0.00 0.00 0.00 4.85
914 1055 2.347490 GAAGGAACGAGGCAGGCA 59.653 61.111 0.00 0.00 0.00 4.75
915 1056 1.743252 GAAGGAACGAGGCAGGCAG 60.743 63.158 0.00 0.00 0.00 4.85
916 1057 3.259633 AAGGAACGAGGCAGGCAGG 62.260 63.158 0.00 0.00 0.00 4.85
948 1089 3.680786 GAACCCCCGCAACAAGGC 61.681 66.667 0.00 0.00 0.00 4.35
1104 1245 2.355193 GCTCCTCCTGCTCCTCGTT 61.355 63.158 0.00 0.00 0.00 3.85
1248 1401 0.598562 CAGGGTCGGTCAGATATCCG 59.401 60.000 0.00 0.00 46.93 4.18
1268 1421 3.204467 TTCCTTGCCCCTTGGTCGG 62.204 63.158 0.00 0.00 0.00 4.79
1270 1423 2.434331 CTTGCCCCTTGGTCGGAA 59.566 61.111 0.00 0.00 0.00 4.30
1276 1429 1.295423 CCCTTGGTCGGAATCGTGT 59.705 57.895 0.00 0.00 37.69 4.49
1288 1441 4.693095 TCGGAATCGTGTGATTGATTTGAA 59.307 37.500 0.00 0.00 44.79 2.69
1299 1452 0.682855 TGATTTGAACGGATGGGGGC 60.683 55.000 0.00 0.00 0.00 5.80
1502 1668 4.523943 TCCCCTGTTTCTCATTGATTTGTG 59.476 41.667 0.00 0.00 0.00 3.33
1571 1738 3.034635 TCTTGGGTTCAGCCTAGAGATC 58.965 50.000 5.24 0.00 37.43 2.75
1575 1742 2.894765 GGGTTCAGCCTAGAGATCCTAC 59.105 54.545 0.00 0.00 37.43 3.18
1576 1743 3.437344 GGGTTCAGCCTAGAGATCCTACT 60.437 52.174 0.00 0.00 37.43 2.57
1577 1744 4.202588 GGGTTCAGCCTAGAGATCCTACTA 60.203 50.000 0.00 0.00 37.43 1.82
1579 1746 5.650703 GGTTCAGCCTAGAGATCCTACTATC 59.349 48.000 0.00 0.00 0.00 2.08
1580 1747 5.444744 TCAGCCTAGAGATCCTACTATCC 57.555 47.826 0.00 0.00 0.00 2.59
1581 1748 5.105130 TCAGCCTAGAGATCCTACTATCCT 58.895 45.833 0.00 0.00 0.00 3.24
1582 1749 6.273104 TCAGCCTAGAGATCCTACTATCCTA 58.727 44.000 0.00 0.00 0.00 2.94
1583 1750 6.385759 TCAGCCTAGAGATCCTACTATCCTAG 59.614 46.154 0.00 0.00 32.36 3.02
1584 1751 5.670361 AGCCTAGAGATCCTACTATCCTAGG 59.330 48.000 0.82 0.82 42.52 3.02
1585 1752 5.937111 CCTAGAGATCCTACTATCCTAGGC 58.063 50.000 2.96 0.00 38.56 3.93
1621 1792 9.935682 GTTAAGATTTGTACCACATACATCATG 57.064 33.333 0.00 0.00 43.46 3.07
1658 1829 6.785076 TGTGATTAATTCAGGGGTTTAGTCA 58.215 36.000 0.00 0.00 34.17 3.41
1669 1840 4.019231 AGGGGTTTAGTCAGACAAGGATTC 60.019 45.833 2.66 0.00 0.00 2.52
1670 1841 3.933332 GGGTTTAGTCAGACAAGGATTCG 59.067 47.826 2.66 0.00 0.00 3.34
1711 1882 3.332034 ACTGGTAATTGTTGGTAGTCGC 58.668 45.455 0.00 0.00 0.00 5.19
1720 1891 4.091939 GGTAGTCGCCCACCACCC 62.092 72.222 0.00 0.00 34.77 4.61
1733 1904 1.829222 CACCACCCGACCACTAGTAAT 59.171 52.381 0.00 0.00 0.00 1.89
1749 1920 7.389053 CCACTAGTAATATTCTCAAAGATGGCC 59.611 40.741 0.00 0.00 0.00 5.36
1802 1975 0.688487 TCCCCGGTGAATTCGAACTT 59.312 50.000 0.00 0.00 0.00 2.66
1860 2047 9.461312 TGCAATTAGTTAGAACTCATAATGGTT 57.539 29.630 0.00 0.00 40.37 3.67
1958 2145 0.542467 TTGCCATGATTGGGTGCAGT 60.542 50.000 0.00 0.00 43.84 4.40
1969 2156 2.187958 TGGGTGCAGTGTCTAGCTTAT 58.812 47.619 0.00 0.00 0.00 1.73
2096 2284 8.964476 ACTTTTACATGGATAATGAGTACAGG 57.036 34.615 0.00 0.00 38.72 4.00
2135 2323 4.124970 CTGTGATAAAGCATGAGCAGCTA 58.875 43.478 0.00 0.00 42.53 3.32
2174 2362 2.673833 GGAATTGAGATAGGGCGTACG 58.326 52.381 11.84 11.84 0.00 3.67
2204 2392 4.470602 AGTTCCCTCTTTTAACACCAAGG 58.529 43.478 0.00 0.00 0.00 3.61
2264 2452 7.004555 TGAGAACTCTTTCTATTGCTTGGTA 57.995 36.000 3.51 0.00 42.53 3.25
2270 2458 6.655425 ACTCTTTCTATTGCTTGGTAAAGGTC 59.345 38.462 0.00 0.00 33.68 3.85
2278 2466 2.548480 GCTTGGTAAAGGTCAGTCACAC 59.452 50.000 0.00 0.00 33.68 3.82
2291 2479 1.536418 TCACACCTCCCTCACCCTG 60.536 63.158 0.00 0.00 0.00 4.45
2319 2507 6.490534 GCCTCTTGCATAAACTATTCACTTC 58.509 40.000 0.00 0.00 40.77 3.01
2420 2609 4.586421 TGTTGGTTTTTGTATGGATGCAGA 59.414 37.500 0.00 0.00 0.00 4.26
2433 2622 6.690194 ATGGATGCAGAAATTTACTCACTC 57.310 37.500 0.00 0.00 0.00 3.51
2434 2623 5.809001 TGGATGCAGAAATTTACTCACTCT 58.191 37.500 0.00 0.00 0.00 3.24
2437 2626 6.818644 GGATGCAGAAATTTACTCACTCTACA 59.181 38.462 0.00 0.00 0.00 2.74
2482 2671 6.660949 CCTAATCATGAAGGGTTCAGTTTTCT 59.339 38.462 0.00 0.00 43.98 2.52
2485 2674 4.104738 TCATGAAGGGTTCAGTTTTCTCCT 59.895 41.667 0.00 0.00 43.98 3.69
2509 2701 7.201732 CCTGAAATAATATTTGCTCGTCCTGTT 60.202 37.037 2.58 0.00 0.00 3.16
2520 2713 3.576648 CTCGTCCTGTTTCACCTAGAAC 58.423 50.000 0.00 0.00 35.56 3.01
2563 2757 9.739276 AGTAATTACAGAATGAAGTTGATGGAA 57.261 29.630 17.65 0.00 39.69 3.53
2652 2848 4.476628 TCAGTGATGTGACTGCATACAT 57.523 40.909 10.13 10.13 42.74 2.29
2653 2849 5.596836 TCAGTGATGTGACTGCATACATA 57.403 39.130 10.28 2.61 42.74 2.29
2686 2882 8.518430 TCGCAATAATGTTATGCCCATTATAT 57.482 30.769 6.18 0.00 42.03 0.86
2687 2883 9.620259 TCGCAATAATGTTATGCCCATTATATA 57.380 29.630 6.18 0.00 42.03 0.86
2991 3189 8.480501 ACTTGAAATAATATTGAGCTGCCATTT 58.519 29.630 0.00 0.00 0.00 2.32
2992 3190 9.970395 CTTGAAATAATATTGAGCTGCCATTTA 57.030 29.630 0.00 0.00 0.00 1.40
3046 3246 3.851458 TGCTCCATATGCAGTCTGAAT 57.149 42.857 3.32 0.20 35.31 2.57
3066 3266 5.643348 TGAATGAGAATGACGTTGCTATTGT 59.357 36.000 0.00 0.00 0.00 2.71
3080 3280 8.395633 ACGTTGCTATTGTAAAATTACCTGATC 58.604 33.333 1.13 0.00 32.72 2.92
3134 3334 1.962822 TGCACTCTCTTGCGCCAAG 60.963 57.895 4.18 9.13 46.20 3.61
3221 3421 4.775236 AGATTGATACAAGGCCTTCTGTC 58.225 43.478 17.29 13.02 0.00 3.51
3238 3439 7.283354 GCCTTCTGTCTGGTATTTATTTAGCTT 59.717 37.037 0.00 0.00 0.00 3.74
3239 3440 9.832445 CCTTCTGTCTGGTATTTATTTAGCTTA 57.168 33.333 0.00 0.00 0.00 3.09
3276 3477 9.543783 AACTATCTTCTTTCAGTAACTCGTTTT 57.456 29.630 0.00 0.00 0.00 2.43
3288 3489 2.218603 ACTCGTTTTGTGGTGATGGTC 58.781 47.619 0.00 0.00 0.00 4.02
3344 3545 9.098355 GTTGAGTGAATGCTATTATGTGACTAA 57.902 33.333 0.00 0.00 0.00 2.24
3348 3549 9.102757 AGTGAATGCTATTATGTGACTAACTTG 57.897 33.333 0.00 0.00 0.00 3.16
3445 3646 9.890629 AATGCAACTACTATATCAGTTTTCAGA 57.109 29.630 0.00 0.00 38.80 3.27
3446 3647 8.932945 TGCAACTACTATATCAGTTTTCAGAG 57.067 34.615 0.00 0.00 38.80 3.35
3535 3739 8.050930 ACCCGAGGTTTTGTAATATTTCTGTAT 58.949 33.333 0.00 0.00 27.29 2.29
3561 3765 5.801350 TTGAGTTGTACTGAATGCTATGC 57.199 39.130 0.00 0.00 0.00 3.14
3577 3781 1.290203 ATGCGCACGTTTGATAGGAG 58.710 50.000 14.90 0.00 0.00 3.69
3627 3831 6.237901 TGGAAATGCTATGTGTACTGAGTTT 58.762 36.000 0.00 0.00 0.00 2.66
3696 3900 4.226384 ACCTGATATGTGCCACTCTGATA 58.774 43.478 0.00 0.00 0.00 2.15
3702 3906 7.512130 TGATATGTGCCACTCTGATAGAAATT 58.488 34.615 0.00 0.00 0.00 1.82
3731 3935 3.938963 TGGAACGAATAGAAAGTGCCATC 59.061 43.478 0.00 0.00 38.60 3.51
3743 3947 7.631717 AGAAAGTGCCATCTTATACCTTTTC 57.368 36.000 0.00 0.00 0.00 2.29
3746 3950 7.775053 AAGTGCCATCTTATACCTTTTCAAA 57.225 32.000 0.00 0.00 0.00 2.69
3752 3956 7.011389 GCCATCTTATACCTTTTCAAAATTGGC 59.989 37.037 0.00 0.00 36.05 4.52
4025 4233 2.892784 TGACGTTGTACACATGGACA 57.107 45.000 0.00 0.00 0.00 4.02
4026 4234 2.749776 TGACGTTGTACACATGGACAG 58.250 47.619 0.00 0.00 0.00 3.51
4048 4256 4.919754 AGAGTTTTGAAGATGCAATTTCGC 59.080 37.500 0.00 0.00 0.00 4.70
4055 4263 4.332543 TGAAGATGCAATTTCGCTCGTTAT 59.667 37.500 0.00 0.00 0.00 1.89
4056 4264 4.882671 AGATGCAATTTCGCTCGTTATT 57.117 36.364 0.00 0.00 0.00 1.40
4057 4265 5.235305 AGATGCAATTTCGCTCGTTATTT 57.765 34.783 0.00 0.00 0.00 1.40
4058 4266 5.266242 AGATGCAATTTCGCTCGTTATTTC 58.734 37.500 0.00 0.00 0.00 2.17
4059 4267 4.678509 TGCAATTTCGCTCGTTATTTCT 57.321 36.364 0.00 0.00 0.00 2.52
4060 4268 5.041951 TGCAATTTCGCTCGTTATTTCTT 57.958 34.783 0.00 0.00 0.00 2.52
4061 4269 6.171932 TGCAATTTCGCTCGTTATTTCTTA 57.828 33.333 0.00 0.00 0.00 2.10
4062 4270 6.781138 TGCAATTTCGCTCGTTATTTCTTAT 58.219 32.000 0.00 0.00 0.00 1.73
4063 4271 7.911343 TGCAATTTCGCTCGTTATTTCTTATA 58.089 30.769 0.00 0.00 0.00 0.98
4064 4272 8.556194 TGCAATTTCGCTCGTTATTTCTTATAT 58.444 29.630 0.00 0.00 0.00 0.86
4065 4273 8.831372 GCAATTTCGCTCGTTATTTCTTATATG 58.169 33.333 0.00 0.00 0.00 1.78
4216 4451 3.265791 GCACACTTTCTAGGGTCATCAG 58.734 50.000 0.00 0.00 35.24 2.90
4245 4480 7.186972 TGGAACGGGGTAGTTATATCATCTAT 58.813 38.462 0.00 0.00 34.00 1.98
4250 4485 6.583562 GGGGTAGTTATATCATCTATGTGGC 58.416 44.000 0.00 0.00 0.00 5.01
4315 4550 2.350522 AGAGACGCATGTGAAATCACC 58.649 47.619 14.43 0.00 45.88 4.02
4399 4634 8.641498 AGGGCATCTGGAATTATATTTGTAAG 57.359 34.615 0.00 0.00 0.00 2.34
4432 4667 1.452953 TACGCCGGTATCCTCAGCAG 61.453 60.000 1.90 0.00 0.00 4.24
4496 4731 5.552178 CCAAGAAGGTTAGTGCTTCTTACT 58.448 41.667 0.00 0.00 43.13 2.24
4552 4787 5.886960 ATGGATTGTAAGTTGTCTCTTGC 57.113 39.130 0.00 0.00 0.00 4.01
4576 4811 7.041107 GCTTGCTCCCATGATTAAAATACAAA 58.959 34.615 0.00 0.00 0.00 2.83
4708 4943 9.850628 TGAATGTCATTCTGATGAATCTTTTTC 57.149 29.630 22.89 0.00 43.58 2.29
4710 4945 6.845302 TGTCATTCTGATGAATCTTTTTCCG 58.155 36.000 0.00 0.00 43.58 4.30
4738 4973 0.401738 TTTCCCCAGGACTTGCAGAG 59.598 55.000 0.00 0.00 0.00 3.35
4907 5142 1.214367 TCGTTTGTCTGTCGAAAGGC 58.786 50.000 0.00 0.00 0.00 4.35
4977 5212 3.305403 GGCCTTTAAGCAGGACAAAGAAC 60.305 47.826 0.00 0.00 42.48 3.01
5037 5273 3.567397 CCCATGCAGTAGTAGTAGGACT 58.433 50.000 0.00 0.00 0.00 3.85
5114 5350 7.669427 ACTTACATGAAATTGAAAAGGCATGA 58.331 30.769 0.00 0.00 36.60 3.07
5123 5362 4.439305 TGAAAAGGCATGATTGTACAGC 57.561 40.909 0.00 0.00 0.00 4.40
5194 5433 2.026641 CTCCATTTAGCACATGGGTGG 58.973 52.381 0.00 0.00 45.38 4.61
5318 5729 1.349627 CCACGCTTTATGCTGCTCG 59.650 57.895 0.00 0.00 40.11 5.03
5329 5740 3.024782 GCTGCTCGTTCTGCTGCTG 62.025 63.158 0.00 0.00 46.79 4.41
5359 5770 9.990360 TGCATACGTAGGAAATAAATAAGATGA 57.010 29.630 12.12 0.00 0.00 2.92
5409 5846 4.331968 TCTCATGAATAAACCACACACCC 58.668 43.478 0.00 0.00 0.00 4.61
5420 5857 5.829062 AACCACACACCCTATACACTTAA 57.171 39.130 0.00 0.00 0.00 1.85
5422 5859 6.382919 ACCACACACCCTATACACTTAAAT 57.617 37.500 0.00 0.00 0.00 1.40
5428 5865 8.483758 ACACACCCTATACACTTAAATTCCTAG 58.516 37.037 0.00 0.00 0.00 3.02
5544 5984 5.207033 GGCAATGACTTCAAAATGCAAAAC 58.793 37.500 13.63 0.00 36.42 2.43
5557 5997 8.695284 TCAAAATGCAAAACGTTGATGTATAAC 58.305 29.630 15.02 1.84 36.83 1.89
5628 6068 3.853330 CAACGAGGGCGATGCACG 61.853 66.667 0.00 0.00 45.66 5.34
5638 6078 1.413767 GCGATGCACGTCGACATTCT 61.414 55.000 17.16 0.00 44.06 2.40
5641 6081 2.532973 CGATGCACGTCGACATTCTTTC 60.533 50.000 17.16 4.05 44.06 2.62
5660 6100 9.745880 ATTCTTTCTTGCATTGAAGCATATAAG 57.254 29.630 0.00 0.00 45.19 1.73
5695 6135 3.077359 GGTGAGATGAAGGTTTGACAGG 58.923 50.000 0.00 0.00 0.00 4.00
5697 6137 4.137543 GTGAGATGAAGGTTTGACAGGTT 58.862 43.478 0.00 0.00 0.00 3.50
5698 6138 4.023707 GTGAGATGAAGGTTTGACAGGTTG 60.024 45.833 0.00 0.00 0.00 3.77
5699 6139 2.887152 AGATGAAGGTTTGACAGGTTGC 59.113 45.455 0.00 0.00 0.00 4.17
5700 6140 2.435372 TGAAGGTTTGACAGGTTGCT 57.565 45.000 0.00 0.00 0.00 3.91
5701 6141 3.569194 TGAAGGTTTGACAGGTTGCTA 57.431 42.857 0.00 0.00 0.00 3.49
5702 6142 3.211045 TGAAGGTTTGACAGGTTGCTAC 58.789 45.455 0.00 0.00 0.00 3.58
5703 6143 2.271944 AGGTTTGACAGGTTGCTACC 57.728 50.000 9.54 9.54 45.39 3.18
5727 6241 7.285401 ACCTTTCTAGTTTCAAGCATGAAGAAA 59.715 33.333 13.13 13.13 45.82 2.52
5751 6265 9.669353 AAATGCAGCTATCAATAAGATTAAACG 57.331 29.630 0.00 0.00 38.19 3.60
5752 6266 7.786178 TGCAGCTATCAATAAGATTAAACGT 57.214 32.000 0.00 0.00 38.19 3.99
5753 6267 7.630026 TGCAGCTATCAATAAGATTAAACGTG 58.370 34.615 0.00 0.00 38.19 4.49
5754 6268 7.494298 TGCAGCTATCAATAAGATTAAACGTGA 59.506 33.333 0.00 0.00 38.19 4.35
5755 6269 8.335356 GCAGCTATCAATAAGATTAAACGTGAA 58.665 33.333 0.00 0.00 38.19 3.18
5767 6281 8.231304 AGATTAAACGTGAATTGCATTTTCAG 57.769 30.769 11.65 9.13 33.95 3.02
5778 6292 5.350504 TTGCATTTTCAGAAGGAAACCAA 57.649 34.783 0.00 0.00 44.89 3.67
5801 6315 1.623811 TGTAGAGCCTGTTTGGGACTC 59.376 52.381 0.00 0.00 36.00 3.36
5802 6316 0.895530 TAGAGCCTGTTTGGGACTCG 59.104 55.000 0.00 0.00 35.89 4.18
5803 6317 2.032681 AGCCTGTTTGGGACTCGC 59.967 61.111 0.00 0.00 36.00 5.03
5804 6318 2.281484 GCCTGTTTGGGACTCGCA 60.281 61.111 0.00 0.00 36.00 5.10
5805 6319 2.617274 GCCTGTTTGGGACTCGCAC 61.617 63.158 0.00 0.00 36.00 5.34
5811 9370 2.271800 GTTTGGGACTCGCACAGATAG 58.728 52.381 0.00 0.00 0.00 2.08
5842 9401 0.535102 AGCTTCTGACAACCAACGGG 60.535 55.000 0.00 0.00 41.29 5.28
5843 9402 0.534203 GCTTCTGACAACCAACGGGA 60.534 55.000 0.00 0.00 38.05 5.14
5845 9404 2.504367 CTTCTGACAACCAACGGGATT 58.496 47.619 0.00 0.00 38.05 3.01
5846 9405 1.890876 TCTGACAACCAACGGGATTG 58.109 50.000 0.00 0.00 38.05 2.67
5848 9407 2.158740 TCTGACAACCAACGGGATTGAA 60.159 45.455 0.00 0.00 41.23 2.69
5849 9408 2.226330 TGACAACCAACGGGATTGAAG 58.774 47.619 0.00 0.00 41.23 3.02
5850 9409 0.958822 ACAACCAACGGGATTGAAGC 59.041 50.000 0.00 0.00 41.23 3.86
5851 9410 1.247567 CAACCAACGGGATTGAAGCT 58.752 50.000 0.00 0.00 41.23 3.74
5852 9411 1.613437 CAACCAACGGGATTGAAGCTT 59.387 47.619 0.00 0.00 41.23 3.74
5853 9412 1.534729 ACCAACGGGATTGAAGCTTC 58.465 50.000 19.89 19.89 41.23 3.86
5854 9413 1.202879 ACCAACGGGATTGAAGCTTCA 60.203 47.619 25.16 25.16 41.23 3.02
5855 9414 2.751479 ACCAACGGGATTGAAGCTTCAA 60.751 45.455 36.74 36.74 43.59 2.69
5869 9428 6.507900 TGAAGCTTCAATAATACTCTCTCCG 58.492 40.000 26.61 0.00 33.55 4.63
5870 9429 6.096987 TGAAGCTTCAATAATACTCTCTCCGT 59.903 38.462 26.61 0.00 33.55 4.69
5871 9430 7.284716 TGAAGCTTCAATAATACTCTCTCCGTA 59.715 37.037 26.61 0.00 33.55 4.02
5872 9431 7.584122 AGCTTCAATAATACTCTCTCCGTAA 57.416 36.000 0.00 0.00 0.00 3.18
5873 9432 8.008513 AGCTTCAATAATACTCTCTCCGTAAA 57.991 34.615 0.00 0.00 0.00 2.01
5874 9433 7.921745 AGCTTCAATAATACTCTCTCCGTAAAC 59.078 37.037 0.00 0.00 0.00 2.01
5875 9434 7.921745 GCTTCAATAATACTCTCTCCGTAAACT 59.078 37.037 0.00 0.00 0.00 2.66
5886 9445 9.694137 ACTCTCTCCGTAAACTAATATTATTGC 57.306 33.333 0.00 0.00 0.00 3.56
5887 9446 9.141400 CTCTCTCCGTAAACTAATATTATTGCC 57.859 37.037 0.00 0.00 0.00 4.52
5888 9447 8.644216 TCTCTCCGTAAACTAATATTATTGCCA 58.356 33.333 0.00 0.00 0.00 4.92
5889 9448 8.597662 TCTCCGTAAACTAATATTATTGCCAC 57.402 34.615 0.00 0.00 0.00 5.01
5890 9449 7.658575 TCTCCGTAAACTAATATTATTGCCACC 59.341 37.037 0.00 0.00 0.00 4.61
5891 9450 7.511268 TCCGTAAACTAATATTATTGCCACCT 58.489 34.615 0.00 0.00 0.00 4.00
5892 9451 7.994334 TCCGTAAACTAATATTATTGCCACCTT 59.006 33.333 0.00 0.00 0.00 3.50
5893 9452 8.287503 CCGTAAACTAATATTATTGCCACCTTC 58.712 37.037 0.00 0.00 0.00 3.46
5894 9453 8.007716 CGTAAACTAATATTATTGCCACCTTCG 58.992 37.037 0.00 0.00 0.00 3.79
5895 9454 9.048446 GTAAACTAATATTATTGCCACCTTCGA 57.952 33.333 0.00 0.00 0.00 3.71
5896 9455 7.492352 AACTAATATTATTGCCACCTTCGAC 57.508 36.000 0.00 0.00 0.00 4.20
5897 9456 6.827727 ACTAATATTATTGCCACCTTCGACT 58.172 36.000 0.00 0.00 0.00 4.18
5898 9457 6.706270 ACTAATATTATTGCCACCTTCGACTG 59.294 38.462 0.00 0.00 0.00 3.51
5899 9458 2.851263 TTATTGCCACCTTCGACTGT 57.149 45.000 0.00 0.00 0.00 3.55
5900 9459 2.380084 TATTGCCACCTTCGACTGTC 57.620 50.000 0.00 0.00 0.00 3.51
5901 9460 0.321653 ATTGCCACCTTCGACTGTCC 60.322 55.000 1.55 0.00 0.00 4.02
5902 9461 1.407656 TTGCCACCTTCGACTGTCCT 61.408 55.000 1.55 0.00 0.00 3.85
5903 9462 1.079750 GCCACCTTCGACTGTCCTC 60.080 63.158 1.55 0.00 0.00 3.71
5904 9463 1.213013 CCACCTTCGACTGTCCTCG 59.787 63.158 1.55 0.00 34.83 4.63
5905 9464 1.524863 CCACCTTCGACTGTCCTCGT 61.525 60.000 1.55 0.00 35.10 4.18
5906 9465 0.314302 CACCTTCGACTGTCCTCGTT 59.686 55.000 1.55 0.00 35.10 3.85
5907 9466 1.538512 CACCTTCGACTGTCCTCGTTA 59.461 52.381 1.55 0.00 35.10 3.18
5908 9467 1.538950 ACCTTCGACTGTCCTCGTTAC 59.461 52.381 1.55 0.00 35.10 2.50
5909 9468 1.538512 CCTTCGACTGTCCTCGTTACA 59.461 52.381 1.55 0.00 35.10 2.41
5910 9469 2.163815 CCTTCGACTGTCCTCGTTACAT 59.836 50.000 1.55 0.00 35.10 2.29
5911 9470 3.376234 CCTTCGACTGTCCTCGTTACATA 59.624 47.826 1.55 0.00 35.10 2.29
5912 9471 4.036498 CCTTCGACTGTCCTCGTTACATAT 59.964 45.833 1.55 0.00 35.10 1.78
5913 9472 4.808077 TCGACTGTCCTCGTTACATATC 57.192 45.455 1.55 0.00 35.10 1.63
5914 9473 3.562973 TCGACTGTCCTCGTTACATATCC 59.437 47.826 1.55 0.00 35.10 2.59
5915 9474 3.314357 CGACTGTCCTCGTTACATATCCA 59.686 47.826 1.55 0.00 0.00 3.41
5916 9475 4.023107 CGACTGTCCTCGTTACATATCCAT 60.023 45.833 1.55 0.00 0.00 3.41
5917 9476 5.507482 CGACTGTCCTCGTTACATATCCATT 60.507 44.000 1.55 0.00 0.00 3.16
5918 9477 6.235231 ACTGTCCTCGTTACATATCCATTT 57.765 37.500 0.00 0.00 0.00 2.32
5919 9478 7.356089 ACTGTCCTCGTTACATATCCATTTA 57.644 36.000 0.00 0.00 0.00 1.40
5920 9479 7.208080 ACTGTCCTCGTTACATATCCATTTAC 58.792 38.462 0.00 0.00 0.00 2.01
5921 9480 7.114866 TGTCCTCGTTACATATCCATTTACA 57.885 36.000 0.00 0.00 0.00 2.41
5922 9481 6.982141 TGTCCTCGTTACATATCCATTTACAC 59.018 38.462 0.00 0.00 0.00 2.90
5923 9482 6.423001 GTCCTCGTTACATATCCATTTACACC 59.577 42.308 0.00 0.00 0.00 4.16
5924 9483 6.098552 TCCTCGTTACATATCCATTTACACCA 59.901 38.462 0.00 0.00 0.00 4.17
5925 9484 6.764085 CCTCGTTACATATCCATTTACACCAA 59.236 38.462 0.00 0.00 0.00 3.67
5926 9485 7.281324 CCTCGTTACATATCCATTTACACCAAA 59.719 37.037 0.00 0.00 0.00 3.28
5927 9486 8.203937 TCGTTACATATCCATTTACACCAAAG 57.796 34.615 0.00 0.00 0.00 2.77
5928 9487 7.825270 TCGTTACATATCCATTTACACCAAAGT 59.175 33.333 0.00 0.00 0.00 2.66
5929 9488 9.100554 CGTTACATATCCATTTACACCAAAGTA 57.899 33.333 0.00 0.00 0.00 2.24
5931 9490 9.961264 TTACATATCCATTTACACCAAAGTACA 57.039 29.630 0.00 0.00 0.00 2.90
5933 9492 8.902806 ACATATCCATTTACACCAAAGTACATG 58.097 33.333 0.00 0.00 33.86 3.21
5934 9493 6.773976 ATCCATTTACACCAAAGTACATGG 57.226 37.500 14.31 14.31 46.45 3.66
5944 9503 8.732746 ACACCAAAGTACATGGATTATAACTC 57.267 34.615 20.82 0.00 40.56 3.01
5945 9504 8.325787 ACACCAAAGTACATGGATTATAACTCA 58.674 33.333 20.82 0.00 40.56 3.41
5946 9505 9.342308 CACCAAAGTACATGGATTATAACTCAT 57.658 33.333 20.82 0.00 40.56 2.90
5947 9506 9.920946 ACCAAAGTACATGGATTATAACTCATT 57.079 29.630 20.82 0.00 40.56 2.57
5955 9514 9.561069 ACATGGATTATAACTCATTACAGAACC 57.439 33.333 0.00 0.00 0.00 3.62
5956 9515 8.712363 CATGGATTATAACTCATTACAGAACCG 58.288 37.037 0.00 0.00 0.00 4.44
5957 9516 7.214381 TGGATTATAACTCATTACAGAACCGG 58.786 38.462 0.00 0.00 0.00 5.28
5958 9517 7.070198 TGGATTATAACTCATTACAGAACCGGA 59.930 37.037 9.46 0.00 0.00 5.14
5959 9518 7.384387 GGATTATAACTCATTACAGAACCGGAC 59.616 40.741 9.46 0.99 0.00 4.79
5960 9519 5.670792 ATAACTCATTACAGAACCGGACA 57.329 39.130 9.46 0.00 0.00 4.02
5961 9520 3.314541 ACTCATTACAGAACCGGACAC 57.685 47.619 9.46 0.00 0.00 3.67
5962 9521 2.259618 CTCATTACAGAACCGGACACG 58.740 52.381 9.46 0.00 40.55 4.49
5963 9522 1.887854 TCATTACAGAACCGGACACGA 59.112 47.619 9.46 0.00 44.60 4.35
5964 9523 2.494471 TCATTACAGAACCGGACACGAT 59.506 45.455 9.46 0.00 44.60 3.73
5965 9524 2.642139 TTACAGAACCGGACACGATC 57.358 50.000 9.46 0.00 44.60 3.69
5966 9525 0.448990 TACAGAACCGGACACGATCG 59.551 55.000 14.88 14.88 44.60 3.69
5967 9526 1.239296 ACAGAACCGGACACGATCGA 61.239 55.000 24.34 0.00 44.60 3.59
5968 9527 0.523546 CAGAACCGGACACGATCGAG 60.524 60.000 24.34 17.42 44.60 4.04
5969 9528 0.959372 AGAACCGGACACGATCGAGT 60.959 55.000 24.34 21.13 44.60 4.18
5970 9529 0.729116 GAACCGGACACGATCGAGTA 59.271 55.000 24.34 0.00 44.60 2.59
5971 9530 0.449388 AACCGGACACGATCGAGTAC 59.551 55.000 24.34 20.22 44.60 2.73
5972 9531 1.354506 CCGGACACGATCGAGTACC 59.645 63.158 24.34 19.98 44.60 3.34
5973 9532 1.094073 CCGGACACGATCGAGTACCT 61.094 60.000 24.34 0.00 44.60 3.08
5974 9533 0.304098 CGGACACGATCGAGTACCTC 59.696 60.000 24.34 7.83 44.60 3.85
5975 9534 1.376543 GGACACGATCGAGTACCTCA 58.623 55.000 24.34 0.00 0.00 3.86
5976 9535 1.741706 GGACACGATCGAGTACCTCAA 59.258 52.381 24.34 0.00 0.00 3.02
5977 9536 2.163010 GGACACGATCGAGTACCTCAAA 59.837 50.000 24.34 0.00 0.00 2.69
5978 9537 3.181489 GGACACGATCGAGTACCTCAAAT 60.181 47.826 24.34 0.00 0.00 2.32
5979 9538 4.030134 ACACGATCGAGTACCTCAAATC 57.970 45.455 24.34 0.00 0.00 2.17
5980 9539 3.036633 CACGATCGAGTACCTCAAATCG 58.963 50.000 24.34 17.45 44.22 3.34
5981 9540 2.941064 ACGATCGAGTACCTCAAATCGA 59.059 45.455 24.34 15.02 46.90 3.59
5982 9541 3.376234 ACGATCGAGTACCTCAAATCGAA 59.624 43.478 24.34 5.18 46.09 3.71
5983 9542 3.969352 CGATCGAGTACCTCAAATCGAAG 59.031 47.826 10.26 1.92 46.09 3.79
5984 9543 3.777465 TCGAGTACCTCAAATCGAAGG 57.223 47.619 0.00 0.00 40.88 3.46
5985 9544 2.159282 TCGAGTACCTCAAATCGAAGGC 60.159 50.000 0.60 0.00 40.88 4.35
5986 9545 2.416836 CGAGTACCTCAAATCGAAGGCA 60.417 50.000 0.60 0.00 37.35 4.75
5987 9546 3.596214 GAGTACCTCAAATCGAAGGCAA 58.404 45.455 0.60 0.00 0.00 4.52
5988 9547 4.000988 GAGTACCTCAAATCGAAGGCAAA 58.999 43.478 0.60 0.00 0.00 3.68
5989 9548 4.589908 AGTACCTCAAATCGAAGGCAAAT 58.410 39.130 0.60 0.00 0.00 2.32
5990 9549 5.010282 AGTACCTCAAATCGAAGGCAAATT 58.990 37.500 0.60 0.00 0.00 1.82
5991 9550 4.871933 ACCTCAAATCGAAGGCAAATTT 57.128 36.364 0.60 0.00 0.00 1.82
5992 9551 5.975693 ACCTCAAATCGAAGGCAAATTTA 57.024 34.783 0.60 0.00 0.00 1.40
5993 9552 5.709966 ACCTCAAATCGAAGGCAAATTTAC 58.290 37.500 0.60 0.00 0.00 2.01
5994 9553 5.242838 ACCTCAAATCGAAGGCAAATTTACA 59.757 36.000 0.60 0.00 0.00 2.41
5995 9554 5.572896 CCTCAAATCGAAGGCAAATTTACAC 59.427 40.000 0.00 0.00 0.00 2.90
5996 9555 6.325919 TCAAATCGAAGGCAAATTTACACT 57.674 33.333 0.00 0.00 0.00 3.55
5997 9556 7.361713 CCTCAAATCGAAGGCAAATTTACACTA 60.362 37.037 0.00 0.00 0.00 2.74
5998 9557 7.877003 TCAAATCGAAGGCAAATTTACACTAA 58.123 30.769 0.00 0.00 0.00 2.24
5999 9558 8.353684 TCAAATCGAAGGCAAATTTACACTAAA 58.646 29.630 0.00 0.00 0.00 1.85
6000 9559 8.424731 CAAATCGAAGGCAAATTTACACTAAAC 58.575 33.333 0.00 0.00 0.00 2.01
6001 9560 5.681880 TCGAAGGCAAATTTACACTAAACG 58.318 37.500 0.00 0.00 0.00 3.60
6002 9561 5.466058 TCGAAGGCAAATTTACACTAAACGA 59.534 36.000 0.00 0.00 0.00 3.85
6003 9562 5.788531 CGAAGGCAAATTTACACTAAACGAG 59.211 40.000 0.00 0.00 0.00 4.18
6004 9563 5.043189 AGGCAAATTTACACTAAACGAGC 57.957 39.130 0.00 0.00 0.00 5.03
6005 9564 4.760204 AGGCAAATTTACACTAAACGAGCT 59.240 37.500 0.00 0.00 0.00 4.09
6006 9565 4.851558 GGCAAATTTACACTAAACGAGCTG 59.148 41.667 0.00 0.00 0.00 4.24
6007 9566 5.334569 GGCAAATTTACACTAAACGAGCTGA 60.335 40.000 0.00 0.00 0.00 4.26
6008 9567 6.140110 GCAAATTTACACTAAACGAGCTGAA 58.860 36.000 0.00 0.00 0.00 3.02
6009 9568 6.635239 GCAAATTTACACTAAACGAGCTGAAA 59.365 34.615 0.00 0.00 0.00 2.69
6010 9569 7.326063 GCAAATTTACACTAAACGAGCTGAAAT 59.674 33.333 0.00 0.00 0.00 2.17
6011 9570 8.840867 CAAATTTACACTAAACGAGCTGAAATC 58.159 33.333 0.00 0.00 0.00 2.17
6012 9571 7.667043 ATTTACACTAAACGAGCTGAAATCA 57.333 32.000 0.00 0.00 0.00 2.57
6013 9572 4.992381 ACACTAAACGAGCTGAAATCAC 57.008 40.909 0.00 0.00 0.00 3.06
6014 9573 4.377021 ACACTAAACGAGCTGAAATCACA 58.623 39.130 0.00 0.00 0.00 3.58
6015 9574 4.814234 ACACTAAACGAGCTGAAATCACAA 59.186 37.500 0.00 0.00 0.00 3.33
6016 9575 5.050091 ACACTAAACGAGCTGAAATCACAAG 60.050 40.000 0.00 0.00 0.00 3.16
6017 9576 5.177511 CACTAAACGAGCTGAAATCACAAGA 59.822 40.000 0.00 0.00 0.00 3.02
6018 9577 4.739046 AAACGAGCTGAAATCACAAGAG 57.261 40.909 0.00 0.00 0.00 2.85
6019 9578 2.693069 ACGAGCTGAAATCACAAGAGG 58.307 47.619 0.00 0.00 0.00 3.69
6020 9579 2.005451 CGAGCTGAAATCACAAGAGGG 58.995 52.381 0.00 0.00 0.00 4.30
6021 9580 2.354103 CGAGCTGAAATCACAAGAGGGA 60.354 50.000 0.00 0.00 0.00 4.20
6022 9581 3.679389 GAGCTGAAATCACAAGAGGGAA 58.321 45.455 0.00 0.00 0.00 3.97
6023 9582 4.074970 GAGCTGAAATCACAAGAGGGAAA 58.925 43.478 0.00 0.00 0.00 3.13
6024 9583 3.823304 AGCTGAAATCACAAGAGGGAAAC 59.177 43.478 0.00 0.00 0.00 2.78
6025 9584 3.569701 GCTGAAATCACAAGAGGGAAACA 59.430 43.478 0.00 0.00 0.00 2.83
6026 9585 4.219288 GCTGAAATCACAAGAGGGAAACAT 59.781 41.667 0.00 0.00 0.00 2.71
6027 9586 5.415701 GCTGAAATCACAAGAGGGAAACATA 59.584 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.826128 GTTCAAAATCCTGGAGGGGAAC 59.174 50.000 1.52 9.56 39.02 3.62
3 4 2.721906 AGTTCAAAATCCTGGAGGGGAA 59.278 45.455 1.52 0.89 39.02 3.97
4 5 2.308866 GAGTTCAAAATCCTGGAGGGGA 59.691 50.000 1.52 0.00 39.95 4.81
5 6 2.621668 GGAGTTCAAAATCCTGGAGGGG 60.622 54.545 1.52 0.00 39.93 4.79
6 7 2.728007 GGAGTTCAAAATCCTGGAGGG 58.272 52.381 1.52 0.00 39.93 4.30
36 37 9.893305 CTTTCGGTTGTAGTTCTTTGATTTATT 57.107 29.630 0.00 0.00 0.00 1.40
37 38 9.280174 TCTTTCGGTTGTAGTTCTTTGATTTAT 57.720 29.630 0.00 0.00 0.00 1.40
38 39 8.553696 GTCTTTCGGTTGTAGTTCTTTGATTTA 58.446 33.333 0.00 0.00 0.00 1.40
39 40 7.415229 GTCTTTCGGTTGTAGTTCTTTGATTT 58.585 34.615 0.00 0.00 0.00 2.17
40 41 6.292703 CGTCTTTCGGTTGTAGTTCTTTGATT 60.293 38.462 0.00 0.00 35.71 2.57
41 42 5.176958 CGTCTTTCGGTTGTAGTTCTTTGAT 59.823 40.000 0.00 0.00 35.71 2.57
42 43 4.505191 CGTCTTTCGGTTGTAGTTCTTTGA 59.495 41.667 0.00 0.00 35.71 2.69
43 44 4.758561 CGTCTTTCGGTTGTAGTTCTTTG 58.241 43.478 0.00 0.00 35.71 2.77
44 45 3.246936 GCGTCTTTCGGTTGTAGTTCTTT 59.753 43.478 0.00 0.00 40.26 2.52
45 46 2.798847 GCGTCTTTCGGTTGTAGTTCTT 59.201 45.455 0.00 0.00 40.26 2.52
46 47 2.401351 GCGTCTTTCGGTTGTAGTTCT 58.599 47.619 0.00 0.00 40.26 3.01
47 48 1.458445 GGCGTCTTTCGGTTGTAGTTC 59.542 52.381 0.00 0.00 40.26 3.01
48 49 1.202557 TGGCGTCTTTCGGTTGTAGTT 60.203 47.619 0.00 0.00 40.26 2.24
49 50 0.390124 TGGCGTCTTTCGGTTGTAGT 59.610 50.000 0.00 0.00 40.26 2.73
50 51 1.722011 ATGGCGTCTTTCGGTTGTAG 58.278 50.000 0.00 0.00 40.26 2.74
51 52 3.450578 GATATGGCGTCTTTCGGTTGTA 58.549 45.455 0.00 0.00 40.26 2.41
52 53 2.277084 GATATGGCGTCTTTCGGTTGT 58.723 47.619 0.00 0.00 40.26 3.32
53 54 1.597663 GGATATGGCGTCTTTCGGTTG 59.402 52.381 0.00 0.00 40.26 3.77
54 55 1.208535 TGGATATGGCGTCTTTCGGTT 59.791 47.619 0.00 0.00 40.26 4.44
55 56 0.828022 TGGATATGGCGTCTTTCGGT 59.172 50.000 0.00 0.00 40.26 4.69
56 57 1.597663 GTTGGATATGGCGTCTTTCGG 59.402 52.381 0.00 0.00 40.26 4.30
57 58 2.540101 GAGTTGGATATGGCGTCTTTCG 59.460 50.000 0.00 0.00 43.12 3.46
58 59 3.798202 AGAGTTGGATATGGCGTCTTTC 58.202 45.455 0.00 0.00 0.00 2.62
59 60 3.452627 AGAGAGTTGGATATGGCGTCTTT 59.547 43.478 0.00 0.00 0.00 2.52
60 61 3.034635 AGAGAGTTGGATATGGCGTCTT 58.965 45.455 0.00 0.00 0.00 3.01
61 62 2.625790 GAGAGAGTTGGATATGGCGTCT 59.374 50.000 0.00 0.00 0.00 4.18
62 63 2.605823 CGAGAGAGTTGGATATGGCGTC 60.606 54.545 0.00 0.00 0.00 5.19
63 64 1.338337 CGAGAGAGTTGGATATGGCGT 59.662 52.381 0.00 0.00 0.00 5.68
72 73 7.478520 TTTACTTTTTCTTCGAGAGAGTTGG 57.521 36.000 0.00 0.00 43.69 3.77
83 84 8.915654 CCATGTAACTGCATTTACTTTTTCTTC 58.084 33.333 22.74 0.00 33.73 2.87
86 87 9.855021 ATACCATGTAACTGCATTTACTTTTTC 57.145 29.630 22.74 1.76 33.73 2.29
90 91 8.752005 ATGATACCATGTAACTGCATTTACTT 57.248 30.769 22.74 16.00 33.73 2.24
138 139 8.514594 GTTTCATTCCCATATGGTGTATGTATG 58.485 37.037 20.46 12.97 34.77 2.39
139 140 8.448008 AGTTTCATTCCCATATGGTGTATGTAT 58.552 33.333 20.46 1.54 34.77 2.29
140 141 7.811282 AGTTTCATTCCCATATGGTGTATGTA 58.189 34.615 20.46 11.47 34.77 2.29
141 142 6.672593 AGTTTCATTCCCATATGGTGTATGT 58.327 36.000 20.46 3.76 34.77 2.29
142 143 7.000472 AGAGTTTCATTCCCATATGGTGTATG 59.000 38.462 20.46 18.19 34.77 2.39
143 144 7.154191 AGAGTTTCATTCCCATATGGTGTAT 57.846 36.000 20.46 8.44 34.77 2.29
144 145 6.575244 AGAGTTTCATTCCCATATGGTGTA 57.425 37.500 20.46 6.52 34.77 2.90
145 146 5.456921 AGAGTTTCATTCCCATATGGTGT 57.543 39.130 20.46 3.10 34.77 4.16
146 147 5.887598 TGAAGAGTTTCATTCCCATATGGTG 59.112 40.000 20.46 12.24 38.37 4.17
147 148 6.078456 TGAAGAGTTTCATTCCCATATGGT 57.922 37.500 20.46 0.00 38.37 3.55
148 149 7.286087 TCATTGAAGAGTTTCATTCCCATATGG 59.714 37.037 15.41 15.41 42.60 2.74
149 150 8.229253 TCATTGAAGAGTTTCATTCCCATATG 57.771 34.615 0.00 0.00 42.60 1.78
150 151 8.689972 GTTCATTGAAGAGTTTCATTCCCATAT 58.310 33.333 0.00 0.00 42.60 1.78
151 152 7.669304 TGTTCATTGAAGAGTTTCATTCCCATA 59.331 33.333 0.00 0.00 42.60 2.74
152 153 6.494491 TGTTCATTGAAGAGTTTCATTCCCAT 59.506 34.615 0.00 0.00 42.60 4.00
153 154 5.832595 TGTTCATTGAAGAGTTTCATTCCCA 59.167 36.000 0.00 0.00 42.60 4.37
161 162 8.849168 TGAATGTACATGTTCATTGAAGAGTTT 58.151 29.630 28.68 8.31 34.92 2.66
217 220 9.543018 GTTTTATGACTTCCAAAAGATTAGACG 57.457 33.333 0.00 0.00 36.30 4.18
226 229 9.569122 AGCTAACTAGTTTTATGACTTCCAAAA 57.431 29.630 14.49 0.00 0.00 2.44
241 244 6.867293 CGTTTCTAGGAACAAGCTAACTAGTT 59.133 38.462 14.35 13.68 34.31 2.24
249 252 6.567891 GCATAAAACGTTTCTAGGAACAAGCT 60.568 38.462 15.01 0.00 0.00 3.74
260 263 6.141685 CGCAACTTAAAGCATAAAACGTTTCT 59.858 34.615 15.01 3.96 0.00 2.52
266 269 6.927933 ATGACGCAACTTAAAGCATAAAAC 57.072 33.333 0.00 0.00 0.00 2.43
288 291 5.566627 GCCAACAGCAAAGTACCATTACAAT 60.567 40.000 0.00 0.00 42.97 2.71
323 326 5.163784 CCAAGTGAACAGATGAGCAACATAG 60.164 44.000 0.00 0.00 39.56 2.23
325 328 3.504906 CCAAGTGAACAGATGAGCAACAT 59.495 43.478 0.00 0.00 42.47 2.71
342 345 0.104304 GCGATATCACCGGACCAAGT 59.896 55.000 9.46 0.00 0.00 3.16
343 346 0.389391 AGCGATATCACCGGACCAAG 59.611 55.000 9.46 0.00 0.00 3.61
346 353 1.664965 GCAGCGATATCACCGGACC 60.665 63.158 9.46 0.00 0.00 4.46
348 355 1.399744 AAGGCAGCGATATCACCGGA 61.400 55.000 9.46 0.00 0.00 5.14
350 357 1.278172 CGAAGGCAGCGATATCACCG 61.278 60.000 3.12 0.00 0.00 4.94
368 375 3.068165 AGAAAAAGAAAACAGAAGGCCCG 59.932 43.478 0.00 0.00 0.00 6.13
371 378 4.686972 AGCAGAAAAAGAAAACAGAAGGC 58.313 39.130 0.00 0.00 0.00 4.35
376 383 8.279103 CAGACTACTAGCAGAAAAAGAAAACAG 58.721 37.037 0.00 0.00 0.00 3.16
377 384 7.769044 ACAGACTACTAGCAGAAAAAGAAAACA 59.231 33.333 0.00 0.00 0.00 2.83
378 385 8.144155 ACAGACTACTAGCAGAAAAAGAAAAC 57.856 34.615 0.00 0.00 0.00 2.43
383 390 8.865001 GTTCATACAGACTACTAGCAGAAAAAG 58.135 37.037 0.00 0.00 0.00 2.27
392 399 7.159322 ACAACTGGTTCATACAGACTACTAG 57.841 40.000 0.00 0.00 39.24 2.57
416 423 8.098286 TCATCTACGGTTTTCATTAGGAGAAAA 58.902 33.333 0.00 0.00 41.27 2.29
417 424 7.617225 TCATCTACGGTTTTCATTAGGAGAAA 58.383 34.615 0.00 0.00 33.48 2.52
420 427 7.843490 TTTCATCTACGGTTTTCATTAGGAG 57.157 36.000 0.00 0.00 0.00 3.69
423 430 9.329913 CTTGTTTTCATCTACGGTTTTCATTAG 57.670 33.333 0.00 0.00 0.00 1.73
433 440 3.125316 GCACCTCTTGTTTTCATCTACGG 59.875 47.826 0.00 0.00 0.00 4.02
475 613 1.062148 GCACGGAGCGGAGTTTTATTC 59.938 52.381 0.00 0.00 0.00 1.75
491 629 4.095410 TGCAAGAGAATATTTTGGCACG 57.905 40.909 0.00 0.00 0.00 5.34
502 640 7.887495 AGAAAAGATAAGGACTTGCAAGAGAAT 59.113 33.333 32.50 16.70 0.00 2.40
508 646 6.431234 GGAGAAGAAAAGATAAGGACTTGCAA 59.569 38.462 0.00 0.00 0.00 4.08
565 706 3.319122 TGGATGTGTGATGTATCCTCTCG 59.681 47.826 0.00 0.00 40.77 4.04
574 715 1.078214 CCCGCTGGATGTGTGATGT 60.078 57.895 0.00 0.00 0.00 3.06
575 716 1.091771 GTCCCGCTGGATGTGTGATG 61.092 60.000 0.00 0.00 44.28 3.07
576 717 1.221840 GTCCCGCTGGATGTGTGAT 59.778 57.895 0.00 0.00 44.28 3.06
577 718 2.662596 GTCCCGCTGGATGTGTGA 59.337 61.111 0.00 0.00 44.28 3.58
578 719 2.436646 GGTCCCGCTGGATGTGTG 60.437 66.667 0.00 0.00 44.28 3.82
579 720 2.300967 ATGGTCCCGCTGGATGTGT 61.301 57.895 0.00 0.00 44.28 3.72
580 721 1.820906 CATGGTCCCGCTGGATGTG 60.821 63.158 0.00 0.00 44.28 3.21
654 795 6.349944 CCACATGAATCTCCTCCTTTTTCTTG 60.350 42.308 0.00 0.00 0.00 3.02
655 796 5.713861 CCACATGAATCTCCTCCTTTTTCTT 59.286 40.000 0.00 0.00 0.00 2.52
664 805 0.548031 TGGGCCACATGAATCTCCTC 59.452 55.000 0.00 0.00 0.00 3.71
691 832 4.097741 TCACAATGAACTTTGAGTGGGTTG 59.902 41.667 7.29 0.00 0.00 3.77
720 861 1.140852 TGGGTTCAGACCTTGAGTGTG 59.859 52.381 0.00 0.00 45.75 3.82
774 915 0.031857 CGCAAGTTTTGTGATGGCCA 59.968 50.000 8.56 8.56 43.66 5.36
775 916 0.667184 CCGCAAGTTTTGTGATGGCC 60.667 55.000 0.00 0.00 43.66 5.36
776 917 1.284297 GCCGCAAGTTTTGTGATGGC 61.284 55.000 4.07 3.19 43.66 4.40
777 918 1.003262 CGCCGCAAGTTTTGTGATGG 61.003 55.000 4.07 0.00 43.66 3.51
778 919 0.040514 TCGCCGCAAGTTTTGTGATG 60.041 50.000 4.07 0.00 43.66 3.07
779 920 0.040425 GTCGCCGCAAGTTTTGTGAT 60.040 50.000 4.07 0.00 43.66 3.06
841 982 5.183969 GGGGGAAATAATAATAGTCGGAGC 58.816 45.833 0.00 0.00 0.00 4.70
861 1002 1.527370 CGAGGAGGCTAAAAGGGGG 59.473 63.158 0.00 0.00 0.00 5.40
863 1004 0.253327 AAGCGAGGAGGCTAAAAGGG 59.747 55.000 0.00 0.00 43.93 3.95
891 1032 1.737008 GCCTCGTTCCTTCCGTGAC 60.737 63.158 0.00 0.00 0.00 3.67
917 1058 3.732849 GTTCCCCTCCCCTGCCTG 61.733 72.222 0.00 0.00 0.00 4.85
975 1116 1.462035 GGATGGGATGGGATGGGTG 59.538 63.158 0.00 0.00 0.00 4.61
976 1117 1.780066 GGGATGGGATGGGATGGGT 60.780 63.158 0.00 0.00 0.00 4.51
978 1119 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
979 1120 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
980 1121 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
981 1122 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
982 1123 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
983 1124 0.040646 CATGGGATGGGATGGGATGG 59.959 60.000 0.00 0.00 0.00 3.51
984 1125 0.613853 GCATGGGATGGGATGGGATG 60.614 60.000 0.00 0.00 0.00 3.51
985 1126 1.778981 GCATGGGATGGGATGGGAT 59.221 57.895 0.00 0.00 0.00 3.85
986 1127 2.472463 GGCATGGGATGGGATGGGA 61.472 63.158 0.00 0.00 0.00 4.37
1104 1245 4.316823 AGGACGGAGAGGTGGGCA 62.317 66.667 0.00 0.00 0.00 5.36
1221 1368 2.681778 ACCGACCCTGAGCTGGAG 60.682 66.667 0.00 0.00 0.00 3.86
1248 1401 1.979155 GACCAAGGGGCAAGGAAGC 60.979 63.158 0.00 0.00 37.90 3.86
1268 1421 4.788100 CCGTTCAAATCAATCACACGATTC 59.212 41.667 0.00 0.00 39.96 2.52
1270 1423 4.000325 TCCGTTCAAATCAATCACACGAT 59.000 39.130 0.00 0.00 0.00 3.73
1276 1429 3.023119 CCCCATCCGTTCAAATCAATCA 58.977 45.455 0.00 0.00 0.00 2.57
1288 1441 3.961414 ACAAACGCCCCCATCCGT 61.961 61.111 0.00 0.00 39.70 4.69
1299 1452 1.369209 CTGCGCTCCAACACAAACG 60.369 57.895 9.73 0.00 0.00 3.60
1480 1637 4.281688 ACACAAATCAATGAGAAACAGGGG 59.718 41.667 0.00 0.00 0.00 4.79
1571 1738 4.703093 GTGCTTCTAGCCTAGGATAGTAGG 59.297 50.000 30.47 22.24 41.51 3.18
1575 1742 3.150767 ACGTGCTTCTAGCCTAGGATAG 58.849 50.000 25.40 25.40 41.51 2.08
1576 1743 3.225177 ACGTGCTTCTAGCCTAGGATA 57.775 47.619 14.75 10.37 41.51 2.59
1577 1744 2.074729 ACGTGCTTCTAGCCTAGGAT 57.925 50.000 14.75 9.51 41.51 3.24
1579 1746 3.380637 TCTTAACGTGCTTCTAGCCTAGG 59.619 47.826 3.67 3.67 41.51 3.02
1580 1747 4.634184 TCTTAACGTGCTTCTAGCCTAG 57.366 45.455 0.00 0.00 41.51 3.02
1581 1748 5.593679 AATCTTAACGTGCTTCTAGCCTA 57.406 39.130 0.00 0.00 41.51 3.93
1582 1749 4.473477 AATCTTAACGTGCTTCTAGCCT 57.527 40.909 0.00 0.00 41.51 4.58
1583 1750 4.392138 ACAAATCTTAACGTGCTTCTAGCC 59.608 41.667 0.00 0.00 41.51 3.93
1584 1751 5.532025 ACAAATCTTAACGTGCTTCTAGC 57.468 39.130 0.00 0.00 42.82 3.42
1585 1752 6.588756 TGGTACAAATCTTAACGTGCTTCTAG 59.411 38.462 0.00 0.00 31.92 2.43
1658 1829 1.398390 GCGAAATGCGAATCCTTGTCT 59.602 47.619 0.00 0.00 44.57 3.41
1670 1841 1.643832 GATGGGTCGAGCGAAATGC 59.356 57.895 8.77 0.00 46.98 3.56
1693 1864 2.011947 GGGCGACTACCAACAATTACC 58.988 52.381 0.00 0.00 0.00 2.85
1711 1882 2.605295 TAGTGGTCGGGTGGTGGG 60.605 66.667 0.00 0.00 0.00 4.61
1720 1891 9.186323 CATCTTTGAGAATATTACTAGTGGTCG 57.814 37.037 5.39 0.00 0.00 4.79
1733 1904 2.170397 TCTGCGGCCATCTTTGAGAATA 59.830 45.455 2.24 0.00 0.00 1.75
1817 1990 4.339872 TTGCAAAGCCTCAATTTCATGT 57.660 36.364 0.00 0.00 0.00 3.21
1818 1991 5.873179 AATTGCAAAGCCTCAATTTCATG 57.127 34.783 1.71 0.00 39.15 3.07
1819 1992 6.704310 ACTAATTGCAAAGCCTCAATTTCAT 58.296 32.000 1.71 0.00 41.50 2.57
1827 2014 6.149474 TGAGTTCTAACTAATTGCAAAGCCTC 59.851 38.462 1.71 4.94 39.88 4.70
1860 2047 9.890629 ATCAGTAATTAGTGATTAACTCTTGCA 57.109 29.630 24.24 1.92 42.17 4.08
1901 2088 1.716503 AGAAACAACCCATAGGCCCTT 59.283 47.619 0.00 0.00 36.11 3.95
1983 2170 5.469373 TGCATTTGAGAACATCACGATAC 57.531 39.130 0.00 0.00 37.77 2.24
1990 2177 3.490419 GCCATCCTGCATTTGAGAACATC 60.490 47.826 0.00 0.00 0.00 3.06
2096 2284 3.197766 TCACAGTGTTATCCCACTCCATC 59.802 47.826 0.00 0.00 43.70 3.51
2114 2302 2.995283 AGCTGCTCATGCTTTATCACA 58.005 42.857 0.00 0.00 37.52 3.58
2135 2323 3.937814 TCCGCTATTTTCATCACACTGT 58.062 40.909 0.00 0.00 0.00 3.55
2174 2362 7.255381 GGTGTTAAAAGAGGGAACTTCTTAACC 60.255 40.741 3.98 0.00 44.43 2.85
2204 2392 1.806542 CGCCATGCCAATATGTACTCC 59.193 52.381 0.00 0.00 0.00 3.85
2264 2452 0.765510 GGGAGGTGTGACTGACCTTT 59.234 55.000 0.00 0.00 44.28 3.11
2270 2458 1.674057 GGTGAGGGAGGTGTGACTG 59.326 63.158 0.00 0.00 0.00 3.51
2278 2466 3.406200 CAGGCAGGGTGAGGGAGG 61.406 72.222 0.00 0.00 0.00 4.30
2390 2579 9.820725 CATCCATACAAAAACCAACAATATCAT 57.179 29.630 0.00 0.00 0.00 2.45
2393 2582 7.619050 TGCATCCATACAAAAACCAACAATAT 58.381 30.769 0.00 0.00 0.00 1.28
2398 2587 5.132897 TCTGCATCCATACAAAAACCAAC 57.867 39.130 0.00 0.00 0.00 3.77
2411 2600 5.809001 AGAGTGAGTAAATTTCTGCATCCA 58.191 37.500 0.00 0.00 0.00 3.41
2482 2671 6.483307 CAGGACGAGCAAATATTATTTCAGGA 59.517 38.462 0.00 0.00 0.00 3.86
2485 2674 7.624360 AACAGGACGAGCAAATATTATTTCA 57.376 32.000 0.00 0.00 0.00 2.69
2497 2689 1.272490 CTAGGTGAAACAGGACGAGCA 59.728 52.381 0.00 0.00 39.98 4.26
2509 2701 4.530710 ACATTGCTACGTTCTAGGTGAA 57.469 40.909 0.00 0.00 0.00 3.18
2520 2713 2.386661 ACTCCAGGAACATTGCTACG 57.613 50.000 0.00 0.00 0.00 3.51
2563 2757 9.959721 ATAGAACATTTTAGATGTAACTGTGGT 57.040 29.630 0.00 0.00 0.00 4.16
2653 2849 8.405531 GGGCATAACATTATTGCGATAATATGT 58.594 33.333 17.17 11.81 36.53 2.29
2662 2858 9.882996 CTATATAATGGGCATAACATTATTGCG 57.117 33.333 13.77 2.67 44.73 4.85
2702 2898 6.844097 TTTTGGTTCAACCTTAGTTCAAGT 57.156 33.333 8.40 0.00 39.58 3.16
2773 2969 8.294954 TGTTTATTTGGTTCAACCTTAGTTCA 57.705 30.769 8.40 0.00 39.58 3.18
2837 3033 7.139392 GGTTCAACCTTAGTTCAAGTGATTTC 58.861 38.462 0.00 0.00 34.73 2.17
2840 3036 5.690865 TGGTTCAACCTTAGTTCAAGTGAT 58.309 37.500 8.40 0.00 39.58 3.06
2946 3144 7.026631 TCAAGTGACTAATGTTTTCTGGTTG 57.973 36.000 0.00 0.00 0.00 3.77
3018 3218 3.276857 CTGCATATGGAGCAACTCAAGT 58.723 45.455 11.59 0.00 42.17 3.16
3046 3246 7.428282 TTTTACAATAGCAACGTCATTCTCA 57.572 32.000 0.00 0.00 0.00 3.27
3056 3256 7.376072 GCGATCAGGTAATTTTACAATAGCAAC 59.624 37.037 3.12 0.00 35.37 4.17
3066 3266 6.827586 AAACAAGGCGATCAGGTAATTTTA 57.172 33.333 0.00 0.00 0.00 1.52
3080 3280 7.193595 CCAGGATAAACTAATTAAACAAGGCG 58.806 38.462 0.00 0.00 0.00 5.52
3116 3316 1.962822 CTTGGCGCAAGAGAGTGCA 60.963 57.895 10.83 0.00 46.43 4.57
3117 3317 1.669115 TCTTGGCGCAAGAGAGTGC 60.669 57.895 10.83 0.00 44.27 4.40
3134 3334 7.121272 TCGTACTCGAACAAATTTTCTTTGTC 58.879 34.615 4.02 0.00 43.34 3.18
3251 3452 8.979574 CAAAACGAGTTACTGAAAGAAGATAGT 58.020 33.333 0.00 0.00 37.43 2.12
3267 3468 2.616842 GACCATCACCACAAAACGAGTT 59.383 45.455 0.00 0.00 0.00 3.01
3276 3477 1.686355 AAAAAGCGACCATCACCACA 58.314 45.000 0.00 0.00 0.00 4.17
3344 3545 7.308589 GCTGATATTTCCTGTTGTAACACAAGT 60.309 37.037 0.00 0.00 39.00 3.16
3348 3549 5.648092 AGGCTGATATTTCCTGTTGTAACAC 59.352 40.000 0.00 0.00 34.70 3.32
3437 3638 6.729187 AGATACAAAGTTGTGCTCTGAAAAC 58.271 36.000 6.94 0.00 42.31 2.43
3439 3640 6.942532 AAGATACAAAGTTGTGCTCTGAAA 57.057 33.333 6.94 0.00 42.31 2.69
3441 3642 7.877612 TGATAAAGATACAAAGTTGTGCTCTGA 59.122 33.333 6.94 2.72 42.31 3.27
3442 3643 8.032952 TGATAAAGATACAAAGTTGTGCTCTG 57.967 34.615 6.94 0.00 42.31 3.35
3443 3644 8.621532 TTGATAAAGATACAAAGTTGTGCTCT 57.378 30.769 6.94 6.19 42.31 4.09
3535 3739 4.910195 AGCATTCAGTACAACTCAATGGA 58.090 39.130 5.92 0.00 0.00 3.41
3561 3765 0.924090 GAGCTCCTATCAAACGTGCG 59.076 55.000 0.87 0.00 0.00 5.34
3577 3781 5.607119 TCCGAGTTCTATTTGTTTTGAGC 57.393 39.130 0.00 0.00 0.00 4.26
3627 3831 9.925545 TGGGTACAGAAATATACTACTCAGTAA 57.074 33.333 0.00 0.00 40.61 2.24
3666 3870 3.070018 GGCACATATCAGGTCATACAGC 58.930 50.000 0.00 0.00 0.00 4.40
3696 3900 6.940298 TCTATTCGTTCCAACTTCCAATTTCT 59.060 34.615 0.00 0.00 0.00 2.52
3702 3906 5.468746 CACTTTCTATTCGTTCCAACTTCCA 59.531 40.000 0.00 0.00 0.00 3.53
3900 4105 9.958180 TGTTGATATTTTCCTCTATGAACTTGA 57.042 29.630 0.00 0.00 0.00 3.02
3944 4149 6.932400 CCTGTTCCAACATAGTGTTTACAGTA 59.068 38.462 18.21 0.25 38.77 2.74
3946 4151 5.181245 CCCTGTTCCAACATAGTGTTTACAG 59.819 44.000 15.46 15.46 38.77 2.74
3947 4152 5.067273 CCCTGTTCCAACATAGTGTTTACA 58.933 41.667 0.00 0.00 38.77 2.41
3948 4153 4.457949 CCCCTGTTCCAACATAGTGTTTAC 59.542 45.833 0.00 0.00 38.77 2.01
3949 4154 4.507691 CCCCCTGTTCCAACATAGTGTTTA 60.508 45.833 0.00 0.00 38.77 2.01
3950 4155 3.496331 CCCCTGTTCCAACATAGTGTTT 58.504 45.455 0.00 0.00 38.77 2.83
3975 4183 9.668497 GTAAGATATATCCAGAAAACATACCCC 57.332 37.037 9.18 0.00 0.00 4.95
3985 4193 9.516546 ACGTCATGTAGTAAGATATATCCAGAA 57.483 33.333 9.18 0.00 0.00 3.02
3986 4194 9.516546 AACGTCATGTAGTAAGATATATCCAGA 57.483 33.333 9.18 0.00 0.00 3.86
3987 4195 9.561270 CAACGTCATGTAGTAAGATATATCCAG 57.439 37.037 9.18 0.00 0.00 3.86
4025 4233 4.919754 GCGAAATTGCATCTTCAAAACTCT 59.080 37.500 8.52 0.00 34.15 3.24
4026 4234 4.919754 AGCGAAATTGCATCTTCAAAACTC 59.080 37.500 8.52 0.00 37.31 3.01
4176 4411 9.683069 AAGTGTGCAATAAAATTTCTCTAACAG 57.317 29.630 0.00 0.00 0.00 3.16
4216 4451 6.114767 TGATATAACTACCCCGTTCCAAAAC 58.885 40.000 0.00 0.00 0.00 2.43
4245 4480 4.038162 GTGTAAAATTACCAACAGGCCACA 59.962 41.667 5.01 0.00 32.72 4.17
4250 4485 7.513371 TTGTAGGTGTAAAATTACCAACAGG 57.487 36.000 0.00 0.00 39.46 4.00
4283 4518 1.342076 TGCGTCTCTTCCAGGGACTAT 60.342 52.381 2.36 0.00 36.02 2.12
4315 4550 1.229975 TGTCTTCATGGTGCAGCACG 61.230 55.000 22.79 14.28 34.83 5.34
4484 4719 5.449107 TCGACAAACTAGTAAGAAGCACT 57.551 39.130 0.00 0.00 0.00 4.40
4552 4787 9.434420 TTTTTGTATTTTAATCATGGGAGCAAG 57.566 29.630 0.00 0.00 0.00 4.01
4672 4907 5.034797 CAGAATGACATTCACACATCATGC 58.965 41.667 26.05 0.00 41.71 4.06
4708 4943 1.303236 TGGGGAAACTGATGCACGG 60.303 57.895 0.00 0.00 0.00 4.94
4710 4945 0.038166 TCCTGGGGAAACTGATGCAC 59.962 55.000 0.00 0.00 0.00 4.57
4738 4973 3.369756 TCGATTACTTTCATCCACGTTGC 59.630 43.478 0.00 0.00 0.00 4.17
5030 5265 3.003480 CAACAGCTTAAGCCAGTCCTAC 58.997 50.000 23.71 0.00 43.38 3.18
5037 5273 2.205022 AGCATCAACAGCTTAAGCCA 57.795 45.000 23.71 3.62 39.87 4.75
5095 5331 8.095792 TGTACAATCATGCCTTTTCAATTTCAT 58.904 29.630 0.00 0.00 0.00 2.57
5114 5350 1.165270 GGCCAAGAACGCTGTACAAT 58.835 50.000 0.00 0.00 0.00 2.71
5123 5362 2.184448 CATAATTTGCGGCCAAGAACG 58.816 47.619 2.24 0.00 31.52 3.95
5194 5433 5.803967 CAGCTGAGGAAAAATAACTGAATGC 59.196 40.000 8.42 0.00 0.00 3.56
5318 5729 2.250646 TGCACATCAGCAGCAGAAC 58.749 52.632 0.00 0.00 40.11 3.01
5359 5770 4.213482 GCTGAACTGACGGTCTGTTTATTT 59.787 41.667 26.99 10.89 38.41 1.40
5362 5773 2.547218 GGCTGAACTGACGGTCTGTTTA 60.547 50.000 26.99 22.96 38.41 2.01
5371 5808 2.483876 TGAGAAAAGGCTGAACTGACG 58.516 47.619 0.00 0.00 0.00 4.35
5420 5857 9.547279 ACTGGGAAAAATAATTGACTAGGAATT 57.453 29.630 0.00 1.08 0.00 2.17
5422 5859 8.390921 AGACTGGGAAAAATAATTGACTAGGAA 58.609 33.333 0.00 0.00 0.00 3.36
5428 5865 9.710900 ATTTCAAGACTGGGAAAAATAATTGAC 57.289 29.630 6.64 0.00 36.67 3.18
5515 5955 5.220265 GCATTTTGAAGTCATTGCCATAACG 60.220 40.000 0.00 0.00 0.00 3.18
5521 5961 5.207033 GTTTTGCATTTTGAAGTCATTGCC 58.793 37.500 0.00 0.00 0.00 4.52
5544 5984 6.844696 ACCATGCTTAGTTATACATCAACG 57.155 37.500 0.00 0.00 0.00 4.10
5628 6068 5.034554 TCAATGCAAGAAAGAATGTCGAC 57.965 39.130 9.11 9.11 0.00 4.20
5638 6078 9.577110 CTTTCTTATATGCTTCAATGCAAGAAA 57.423 29.630 11.18 11.18 46.61 2.52
5641 6081 9.745880 ATTCTTTCTTATATGCTTCAATGCAAG 57.254 29.630 0.00 0.00 46.61 4.01
5669 6109 7.252612 TGTCAAACCTTCATCTCACCTTATA 57.747 36.000 0.00 0.00 0.00 0.98
5670 6110 6.126863 TGTCAAACCTTCATCTCACCTTAT 57.873 37.500 0.00 0.00 0.00 1.73
5671 6111 5.513094 CCTGTCAAACCTTCATCTCACCTTA 60.513 44.000 0.00 0.00 0.00 2.69
5672 6112 4.392940 CTGTCAAACCTTCATCTCACCTT 58.607 43.478 0.00 0.00 0.00 3.50
5679 6119 2.887152 AGCAACCTGTCAAACCTTCATC 59.113 45.455 0.00 0.00 0.00 2.92
5695 6135 5.238650 TGCTTGAAACTAGAAAGGTAGCAAC 59.761 40.000 0.00 0.00 33.63 4.17
5697 6137 4.968259 TGCTTGAAACTAGAAAGGTAGCA 58.032 39.130 0.00 1.52 34.10 3.49
5698 6138 5.643777 TCATGCTTGAAACTAGAAAGGTAGC 59.356 40.000 0.00 0.00 0.00 3.58
5699 6139 7.604164 TCTTCATGCTTGAAACTAGAAAGGTAG 59.396 37.037 15.12 0.67 41.22 3.18
5700 6140 7.450074 TCTTCATGCTTGAAACTAGAAAGGTA 58.550 34.615 15.12 0.00 41.22 3.08
5701 6141 6.299141 TCTTCATGCTTGAAACTAGAAAGGT 58.701 36.000 15.12 0.00 41.22 3.50
5702 6142 6.808008 TCTTCATGCTTGAAACTAGAAAGG 57.192 37.500 15.12 2.20 41.22 3.11
5703 6143 9.125906 CATTTCTTCATGCTTGAAACTAGAAAG 57.874 33.333 21.76 14.62 41.22 2.62
5704 6144 7.596248 GCATTTCTTCATGCTTGAAACTAGAAA 59.404 33.333 20.55 20.55 45.35 2.52
5705 6145 7.086376 GCATTTCTTCATGCTTGAAACTAGAA 58.914 34.615 15.12 11.94 45.35 2.10
5707 6147 6.866179 GCATTTCTTCATGCTTGAAACTAG 57.134 37.500 15.12 4.86 45.35 2.57
5727 6241 8.285394 CACGTTTAATCTTATTGATAGCTGCAT 58.715 33.333 1.02 0.00 34.45 3.96
5741 6255 8.586570 TGAAAATGCAATTCACGTTTAATCTT 57.413 26.923 12.72 0.00 33.67 2.40
5747 6261 5.463061 CCTTCTGAAAATGCAATTCACGTTT 59.537 36.000 12.72 0.00 33.67 3.60
5748 6262 4.984161 CCTTCTGAAAATGCAATTCACGTT 59.016 37.500 12.72 0.00 33.67 3.99
5751 6265 6.073602 GGTTTCCTTCTGAAAATGCAATTCAC 60.074 38.462 12.72 0.55 44.30 3.18
5752 6266 5.990996 GGTTTCCTTCTGAAAATGCAATTCA 59.009 36.000 15.13 15.13 44.30 2.57
5753 6267 5.990996 TGGTTTCCTTCTGAAAATGCAATTC 59.009 36.000 8.29 8.29 44.30 2.17
5754 6268 5.927819 TGGTTTCCTTCTGAAAATGCAATT 58.072 33.333 0.00 0.00 44.30 2.32
5755 6269 5.549742 TGGTTTCCTTCTGAAAATGCAAT 57.450 34.783 0.00 0.00 44.30 3.56
5756 6270 5.350504 TTGGTTTCCTTCTGAAAATGCAA 57.649 34.783 0.00 0.00 44.30 4.08
5757 6271 5.549742 ATTGGTTTCCTTCTGAAAATGCA 57.450 34.783 0.00 0.00 44.30 3.96
5758 6272 7.099120 ACATATTGGTTTCCTTCTGAAAATGC 58.901 34.615 0.00 0.00 44.30 3.56
5759 6273 9.793252 CTACATATTGGTTTCCTTCTGAAAATG 57.207 33.333 0.00 0.00 44.30 2.32
5760 6274 9.753674 TCTACATATTGGTTTCCTTCTGAAAAT 57.246 29.630 0.00 0.00 44.30 1.82
5761 6275 9.231297 CTCTACATATTGGTTTCCTTCTGAAAA 57.769 33.333 0.00 0.00 44.30 2.29
5767 6281 5.529060 CAGGCTCTACATATTGGTTTCCTTC 59.471 44.000 0.00 0.00 0.00 3.46
5778 6292 4.040755 AGTCCCAAACAGGCTCTACATAT 58.959 43.478 0.00 0.00 35.39 1.78
5801 6315 3.510388 TCTTCACTTCCTATCTGTGCG 57.490 47.619 0.00 0.00 0.00 5.34
5802 6316 4.094146 GCTTTCTTCACTTCCTATCTGTGC 59.906 45.833 0.00 0.00 0.00 4.57
5803 6317 5.486526 AGCTTTCTTCACTTCCTATCTGTG 58.513 41.667 0.00 0.00 0.00 3.66
5804 6318 5.753721 AGCTTTCTTCACTTCCTATCTGT 57.246 39.130 0.00 0.00 0.00 3.41
5805 6319 6.660887 GAAGCTTTCTTCACTTCCTATCTG 57.339 41.667 0.00 0.00 46.14 2.90
5845 9404 6.096987 ACGGAGAGAGTATTATTGAAGCTTCA 59.903 38.462 25.16 25.16 34.92 3.02
5846 9405 6.508777 ACGGAGAGAGTATTATTGAAGCTTC 58.491 40.000 19.89 19.89 0.00 3.86
5848 9407 7.584122 TTACGGAGAGAGTATTATTGAAGCT 57.416 36.000 0.00 0.00 0.00 3.74
5849 9408 7.921745 AGTTTACGGAGAGAGTATTATTGAAGC 59.078 37.037 0.00 0.00 0.00 3.86
5860 9419 9.694137 GCAATAATATTAGTTTACGGAGAGAGT 57.306 33.333 1.02 0.00 0.00 3.24
5861 9420 9.141400 GGCAATAATATTAGTTTACGGAGAGAG 57.859 37.037 1.02 0.00 0.00 3.20
5862 9421 8.644216 TGGCAATAATATTAGTTTACGGAGAGA 58.356 33.333 1.02 0.00 0.00 3.10
5863 9422 8.709646 GTGGCAATAATATTAGTTTACGGAGAG 58.290 37.037 1.02 0.00 0.00 3.20
5864 9423 7.658575 GGTGGCAATAATATTAGTTTACGGAGA 59.341 37.037 1.02 0.00 0.00 3.71
5865 9424 7.660208 AGGTGGCAATAATATTAGTTTACGGAG 59.340 37.037 1.02 0.00 0.00 4.63
5866 9425 7.511268 AGGTGGCAATAATATTAGTTTACGGA 58.489 34.615 1.02 0.00 0.00 4.69
5867 9426 7.739498 AGGTGGCAATAATATTAGTTTACGG 57.261 36.000 1.02 0.00 0.00 4.02
5868 9427 8.007716 CGAAGGTGGCAATAATATTAGTTTACG 58.992 37.037 1.02 0.00 0.00 3.18
5869 9428 9.048446 TCGAAGGTGGCAATAATATTAGTTTAC 57.952 33.333 1.02 0.00 0.00 2.01
5870 9429 9.048446 GTCGAAGGTGGCAATAATATTAGTTTA 57.952 33.333 1.02 0.00 0.00 2.01
5871 9430 7.773690 AGTCGAAGGTGGCAATAATATTAGTTT 59.226 33.333 1.02 0.00 0.00 2.66
5872 9431 7.226720 CAGTCGAAGGTGGCAATAATATTAGTT 59.773 37.037 1.02 0.00 0.00 2.24
5873 9432 6.706270 CAGTCGAAGGTGGCAATAATATTAGT 59.294 38.462 1.02 0.00 0.00 2.24
5874 9433 6.706270 ACAGTCGAAGGTGGCAATAATATTAG 59.294 38.462 1.02 0.00 0.00 1.73
5875 9434 6.588204 ACAGTCGAAGGTGGCAATAATATTA 58.412 36.000 0.00 0.00 0.00 0.98
5876 9435 5.437060 ACAGTCGAAGGTGGCAATAATATT 58.563 37.500 0.00 0.00 0.00 1.28
5877 9436 5.036117 ACAGTCGAAGGTGGCAATAATAT 57.964 39.130 0.00 0.00 0.00 1.28
5878 9437 4.439057 GACAGTCGAAGGTGGCAATAATA 58.561 43.478 0.00 0.00 0.00 0.98
5879 9438 3.270877 GACAGTCGAAGGTGGCAATAAT 58.729 45.455 0.00 0.00 0.00 1.28
5880 9439 2.614481 GGACAGTCGAAGGTGGCAATAA 60.614 50.000 0.00 0.00 0.00 1.40
5881 9440 1.066430 GGACAGTCGAAGGTGGCAATA 60.066 52.381 0.00 0.00 0.00 1.90
5882 9441 0.321653 GGACAGTCGAAGGTGGCAAT 60.322 55.000 0.00 0.00 0.00 3.56
5883 9442 1.070786 GGACAGTCGAAGGTGGCAA 59.929 57.895 0.00 0.00 0.00 4.52
5884 9443 1.816863 GAGGACAGTCGAAGGTGGCA 61.817 60.000 0.00 0.00 0.00 4.92
5885 9444 1.079750 GAGGACAGTCGAAGGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
5886 9445 1.213013 CGAGGACAGTCGAAGGTGG 59.787 63.158 0.00 0.00 42.85 4.61
5887 9446 0.314302 AACGAGGACAGTCGAAGGTG 59.686 55.000 0.00 0.00 42.85 4.00
5888 9447 1.538950 GTAACGAGGACAGTCGAAGGT 59.461 52.381 0.00 0.00 42.85 3.50
5889 9448 1.538512 TGTAACGAGGACAGTCGAAGG 59.461 52.381 0.00 0.00 42.85 3.46
5890 9449 2.983402 TGTAACGAGGACAGTCGAAG 57.017 50.000 0.00 0.00 42.85 3.79
5891 9450 4.036027 GGATATGTAACGAGGACAGTCGAA 59.964 45.833 0.00 0.00 42.85 3.71
5892 9451 3.562973 GGATATGTAACGAGGACAGTCGA 59.437 47.826 0.00 0.00 42.85 4.20
5893 9452 3.314357 TGGATATGTAACGAGGACAGTCG 59.686 47.826 0.00 0.00 45.76 4.18
5894 9453 4.913335 TGGATATGTAACGAGGACAGTC 57.087 45.455 0.00 0.00 0.00 3.51
5895 9454 5.871396 AATGGATATGTAACGAGGACAGT 57.129 39.130 0.00 0.00 0.00 3.55
5896 9455 7.169308 GTGTAAATGGATATGTAACGAGGACAG 59.831 40.741 0.00 0.00 0.00 3.51
5897 9456 6.982141 GTGTAAATGGATATGTAACGAGGACA 59.018 38.462 0.00 0.00 0.00 4.02
5898 9457 6.423001 GGTGTAAATGGATATGTAACGAGGAC 59.577 42.308 0.00 0.00 0.00 3.85
5899 9458 6.098552 TGGTGTAAATGGATATGTAACGAGGA 59.901 38.462 0.00 0.00 0.00 3.71
5900 9459 6.285224 TGGTGTAAATGGATATGTAACGAGG 58.715 40.000 0.00 0.00 0.00 4.63
5901 9460 7.780008 TTGGTGTAAATGGATATGTAACGAG 57.220 36.000 0.00 0.00 0.00 4.18
5902 9461 7.825270 ACTTTGGTGTAAATGGATATGTAACGA 59.175 33.333 0.00 0.00 0.00 3.85
5903 9462 7.981142 ACTTTGGTGTAAATGGATATGTAACG 58.019 34.615 0.00 0.00 0.00 3.18
5905 9464 9.961264 TGTACTTTGGTGTAAATGGATATGTAA 57.039 29.630 0.00 0.00 0.00 2.41
5907 9466 8.902806 CATGTACTTTGGTGTAAATGGATATGT 58.097 33.333 0.00 0.00 35.54 2.29
5918 9477 9.826574 GAGTTATAATCCATGTACTTTGGTGTA 57.173 33.333 13.10 8.41 35.64 2.90
5919 9478 8.325787 TGAGTTATAATCCATGTACTTTGGTGT 58.674 33.333 13.10 6.93 35.64 4.16
5920 9479 8.731275 TGAGTTATAATCCATGTACTTTGGTG 57.269 34.615 13.10 0.00 35.64 4.17
5921 9480 9.920946 AATGAGTTATAATCCATGTACTTTGGT 57.079 29.630 13.10 1.21 35.64 3.67
5929 9488 9.561069 GGTTCTGTAATGAGTTATAATCCATGT 57.439 33.333 0.00 0.08 0.00 3.21
5930 9489 8.712363 CGGTTCTGTAATGAGTTATAATCCATG 58.288 37.037 4.10 0.00 0.00 3.66
5931 9490 7.878127 CCGGTTCTGTAATGAGTTATAATCCAT 59.122 37.037 0.00 0.00 0.00 3.41
5932 9491 7.070198 TCCGGTTCTGTAATGAGTTATAATCCA 59.930 37.037 0.00 0.00 0.00 3.41
5933 9492 7.384387 GTCCGGTTCTGTAATGAGTTATAATCC 59.616 40.741 0.00 0.00 0.00 3.01
5934 9493 7.924412 TGTCCGGTTCTGTAATGAGTTATAATC 59.076 37.037 0.00 0.00 0.00 1.75
5935 9494 7.709613 GTGTCCGGTTCTGTAATGAGTTATAAT 59.290 37.037 0.00 0.00 0.00 1.28
5936 9495 7.037438 GTGTCCGGTTCTGTAATGAGTTATAA 58.963 38.462 0.00 0.00 0.00 0.98
5937 9496 6.567050 GTGTCCGGTTCTGTAATGAGTTATA 58.433 40.000 0.00 0.00 0.00 0.98
5938 9497 5.416947 GTGTCCGGTTCTGTAATGAGTTAT 58.583 41.667 0.00 0.00 0.00 1.89
5939 9498 4.616604 CGTGTCCGGTTCTGTAATGAGTTA 60.617 45.833 0.00 0.00 0.00 2.24
5940 9499 3.660865 GTGTCCGGTTCTGTAATGAGTT 58.339 45.455 0.00 0.00 0.00 3.01
5941 9500 2.352421 CGTGTCCGGTTCTGTAATGAGT 60.352 50.000 0.00 0.00 0.00 3.41
5942 9501 2.094906 TCGTGTCCGGTTCTGTAATGAG 60.095 50.000 0.00 0.00 33.95 2.90
5943 9502 1.887854 TCGTGTCCGGTTCTGTAATGA 59.112 47.619 0.00 0.00 33.95 2.57
5944 9503 2.357327 TCGTGTCCGGTTCTGTAATG 57.643 50.000 0.00 0.00 33.95 1.90
5945 9504 2.479049 CGATCGTGTCCGGTTCTGTAAT 60.479 50.000 7.03 0.00 33.95 1.89
5946 9505 1.135603 CGATCGTGTCCGGTTCTGTAA 60.136 52.381 7.03 0.00 33.95 2.41
5947 9506 0.448990 CGATCGTGTCCGGTTCTGTA 59.551 55.000 7.03 0.00 33.95 2.74
5948 9507 1.211969 CGATCGTGTCCGGTTCTGT 59.788 57.895 7.03 0.00 33.95 3.41
5949 9508 0.523546 CTCGATCGTGTCCGGTTCTG 60.524 60.000 15.94 0.00 33.95 3.02
5950 9509 0.959372 ACTCGATCGTGTCCGGTTCT 60.959 55.000 16.56 0.00 33.95 3.01
5951 9510 0.729116 TACTCGATCGTGTCCGGTTC 59.271 55.000 24.53 0.00 33.95 3.62
5952 9511 0.449388 GTACTCGATCGTGTCCGGTT 59.551 55.000 24.53 3.74 33.95 4.44
5953 9512 1.372087 GGTACTCGATCGTGTCCGGT 61.372 60.000 24.53 12.27 33.95 5.28
5954 9513 1.094073 AGGTACTCGATCGTGTCCGG 61.094 60.000 24.53 0.00 33.95 5.14
5955 9514 2.391469 AGGTACTCGATCGTGTCCG 58.609 57.895 24.53 7.65 0.00 4.79
5968 9527 4.965119 ATTTGCCTTCGATTTGAGGTAC 57.035 40.909 2.94 0.00 0.00 3.34
5969 9528 5.975693 AAATTTGCCTTCGATTTGAGGTA 57.024 34.783 2.94 0.00 0.00 3.08
5970 9529 4.871933 AAATTTGCCTTCGATTTGAGGT 57.128 36.364 2.94 0.00 0.00 3.85
5971 9530 5.572896 GTGTAAATTTGCCTTCGATTTGAGG 59.427 40.000 0.00 0.00 0.00 3.86
5972 9531 6.381801 AGTGTAAATTTGCCTTCGATTTGAG 58.618 36.000 0.00 0.00 0.00 3.02
5973 9532 6.325919 AGTGTAAATTTGCCTTCGATTTGA 57.674 33.333 0.00 0.00 0.00 2.69
5974 9533 8.424731 GTTTAGTGTAAATTTGCCTTCGATTTG 58.575 33.333 0.00 0.00 0.00 2.32
5975 9534 7.325097 CGTTTAGTGTAAATTTGCCTTCGATTT 59.675 33.333 0.00 0.00 0.00 2.17
5976 9535 6.799925 CGTTTAGTGTAAATTTGCCTTCGATT 59.200 34.615 0.00 0.00 0.00 3.34
5977 9536 6.148150 TCGTTTAGTGTAAATTTGCCTTCGAT 59.852 34.615 0.00 0.00 0.00 3.59
5978 9537 5.466058 TCGTTTAGTGTAAATTTGCCTTCGA 59.534 36.000 0.00 7.69 0.00 3.71
5979 9538 5.681880 TCGTTTAGTGTAAATTTGCCTTCG 58.318 37.500 0.00 5.91 0.00 3.79
5980 9539 5.567915 GCTCGTTTAGTGTAAATTTGCCTTC 59.432 40.000 0.00 0.00 0.00 3.46
5981 9540 5.240844 AGCTCGTTTAGTGTAAATTTGCCTT 59.759 36.000 0.00 0.00 0.00 4.35
5982 9541 4.760204 AGCTCGTTTAGTGTAAATTTGCCT 59.240 37.500 0.00 2.07 0.00 4.75
5983 9542 4.851558 CAGCTCGTTTAGTGTAAATTTGCC 59.148 41.667 0.00 0.00 0.00 4.52
5984 9543 5.685841 TCAGCTCGTTTAGTGTAAATTTGC 58.314 37.500 0.00 0.00 0.00 3.68
5985 9544 8.728088 ATTTCAGCTCGTTTAGTGTAAATTTG 57.272 30.769 0.00 0.00 0.00 2.32
5986 9545 8.564574 TGATTTCAGCTCGTTTAGTGTAAATTT 58.435 29.630 0.00 0.00 0.00 1.82
5987 9546 8.015658 GTGATTTCAGCTCGTTTAGTGTAAATT 58.984 33.333 0.00 0.00 0.00 1.82
5988 9547 7.172532 TGTGATTTCAGCTCGTTTAGTGTAAAT 59.827 33.333 0.00 0.00 0.00 1.40
5989 9548 6.480651 TGTGATTTCAGCTCGTTTAGTGTAAA 59.519 34.615 0.00 0.00 0.00 2.01
5990 9549 5.986741 TGTGATTTCAGCTCGTTTAGTGTAA 59.013 36.000 0.00 0.00 0.00 2.41
5991 9550 5.534407 TGTGATTTCAGCTCGTTTAGTGTA 58.466 37.500 0.00 0.00 0.00 2.90
5992 9551 4.377021 TGTGATTTCAGCTCGTTTAGTGT 58.623 39.130 0.00 0.00 0.00 3.55
5993 9552 4.990543 TGTGATTTCAGCTCGTTTAGTG 57.009 40.909 0.00 0.00 0.00 2.74
5994 9553 5.297547 TCTTGTGATTTCAGCTCGTTTAGT 58.702 37.500 0.00 0.00 0.00 2.24
5995 9554 5.163913 CCTCTTGTGATTTCAGCTCGTTTAG 60.164 44.000 0.00 0.00 0.00 1.85
5996 9555 4.690748 CCTCTTGTGATTTCAGCTCGTTTA 59.309 41.667 0.00 0.00 0.00 2.01
5997 9556 3.499918 CCTCTTGTGATTTCAGCTCGTTT 59.500 43.478 0.00 0.00 0.00 3.60
5998 9557 3.070018 CCTCTTGTGATTTCAGCTCGTT 58.930 45.455 0.00 0.00 0.00 3.85
5999 9558 2.613977 CCCTCTTGTGATTTCAGCTCGT 60.614 50.000 0.00 0.00 0.00 4.18
6000 9559 2.005451 CCCTCTTGTGATTTCAGCTCG 58.995 52.381 0.00 0.00 0.00 5.03
6001 9560 3.340814 TCCCTCTTGTGATTTCAGCTC 57.659 47.619 0.00 0.00 0.00 4.09
6002 9561 3.795688 TTCCCTCTTGTGATTTCAGCT 57.204 42.857 0.00 0.00 0.00 4.24
6003 9562 3.569701 TGTTTCCCTCTTGTGATTTCAGC 59.430 43.478 0.00 0.00 0.00 4.26
6004 9563 5.972107 ATGTTTCCCTCTTGTGATTTCAG 57.028 39.130 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.