Multiple sequence alignment - TraesCS1A01G363500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G363500 chr1A 100.000 3167 0 0 1 3167 543966669 543969835 0.000000e+00 5849.0
1 TraesCS1A01G363500 chr1A 98.552 1312 15 2 1529 2839 544031548 544032856 0.000000e+00 2314.0
2 TraesCS1A01G363500 chr1A 91.386 267 5 7 627 875 544036864 544037130 1.810000e-92 350.0
3 TraesCS1A01G363500 chr1B 88.270 1023 99 6 1143 2165 329205200 329206201 0.000000e+00 1205.0
4 TraesCS1A01G363500 chr1B 81.749 526 62 20 626 1119 457030430 457029907 2.940000e-110 409.0
5 TraesCS1A01G363500 chr1B 81.731 520 41 12 4 501 613341309 613341796 4.960000e-103 385.0
6 TraesCS1A01G363500 chr1B 83.729 295 20 7 626 892 329204676 329204970 1.460000e-63 254.0
7 TraesCS1A01G363500 chr1B 81.176 340 39 15 2842 3167 534977685 534977357 1.890000e-62 250.0
8 TraesCS1A01G363500 chr1B 94.203 138 8 0 1105 1242 457029888 457029751 8.900000e-51 211.0
9 TraesCS1A01G363500 chr1B 92.857 112 7 1 516 626 613341857 613341968 9.090000e-36 161.0
10 TraesCS1A01G363500 chr1B 81.564 179 16 11 738 900 280695677 280695500 7.130000e-27 132.0
11 TraesCS1A01G363500 chr2B 88.270 1006 97 6 1160 2165 757821565 757822549 0.000000e+00 1184.0
12 TraesCS1A01G363500 chr2B 87.537 1027 103 9 1140 2165 757687958 757688960 0.000000e+00 1164.0
13 TraesCS1A01G363500 chr2B 84.173 278 15 7 627 875 757830259 757830536 3.160000e-60 243.0
14 TraesCS1A01G363500 chr2B 82.095 296 22 10 627 892 757687435 757687729 1.140000e-54 224.0
15 TraesCS1A01G363500 chr2B 78.623 276 32 9 627 875 463353585 463353860 1.180000e-34 158.0
16 TraesCS1A01G363500 chr3A 95.448 681 23 7 2159 2834 661625879 661625202 0.000000e+00 1079.0
17 TraesCS1A01G363500 chr4D 95.259 675 27 5 2162 2834 417905496 417906167 0.000000e+00 1064.0
18 TraesCS1A01G363500 chr4D 95.259 675 25 6 2162 2834 496810861 496811530 0.000000e+00 1062.0
19 TraesCS1A01G363500 chr4D 89.538 411 29 6 1756 2165 175184864 175185261 2.820000e-140 508.0
20 TraesCS1A01G363500 chr3D 95.252 674 25 5 2163 2834 376771501 376770833 0.000000e+00 1061.0
21 TraesCS1A01G363500 chr3D 89.673 397 38 1 1769 2165 274635390 274634997 1.310000e-138 503.0
22 TraesCS1A01G363500 chr3D 89.421 397 39 1 1769 2165 274423356 274422963 6.100000e-137 497.0
23 TraesCS1A01G363500 chr3D 91.071 168 2 1 738 892 274424195 274424028 6.880000e-52 215.0
24 TraesCS1A01G363500 chr3D 91.071 168 2 1 738 892 274636229 274636062 6.880000e-52 215.0
25 TraesCS1A01G363500 chr3D 87.640 178 7 3 738 900 294054847 294054670 3.220000e-45 193.0
26 TraesCS1A01G363500 chr3D 87.079 178 8 3 738 900 294056325 294056148 1.500000e-43 187.0
27 TraesCS1A01G363500 chr3D 86.517 178 9 3 738 900 294057803 294057626 6.980000e-42 182.0
28 TraesCS1A01G363500 chr5A 95.238 672 27 5 2165 2834 590438452 590437784 0.000000e+00 1059.0
29 TraesCS1A01G363500 chr5A 95.104 674 27 5 2164 2834 619747393 619748063 0.000000e+00 1057.0
30 TraesCS1A01G363500 chr5A 86.628 344 35 7 2835 3167 634146218 634146561 1.390000e-98 370.0
31 TraesCS1A01G363500 chr5A 75.637 353 49 20 2832 3167 650471284 650471616 1.180000e-29 141.0
32 TraesCS1A01G363500 chr2D 95.231 671 26 5 2165 2833 8438720 8438054 0.000000e+00 1057.0
33 TraesCS1A01G363500 chr6D 95.111 675 24 7 2163 2834 453748439 453747771 0.000000e+00 1055.0
34 TraesCS1A01G363500 chr6D 81.973 294 25 9 627 892 287239614 287239907 1.140000e-54 224.0
35 TraesCS1A01G363500 chr6D 81.633 294 26 7 627 892 79089520 79089813 5.320000e-53 219.0
36 TraesCS1A01G363500 chr6D 96.639 119 2 2 784 900 294097164 294097046 2.490000e-46 196.0
37 TraesCS1A01G363500 chr6D 75.645 349 47 17 2835 3167 26612581 26612255 4.260000e-29 139.0
38 TraesCS1A01G363500 chr4A 90.333 300 15 2 861 1146 740364902 740365201 6.410000e-102 381.0
39 TraesCS1A01G363500 chr4A 90.000 300 16 2 861 1146 740284115 740284414 2.980000e-100 375.0
40 TraesCS1A01G363500 chr4A 90.000 300 16 3 861 1146 740318824 740319123 2.980000e-100 375.0
41 TraesCS1A01G363500 chr7A 87.135 342 33 7 2837 3167 553225194 553225535 8.290000e-101 377.0
42 TraesCS1A01G363500 chr7A 81.765 340 46 7 2834 3164 117617048 117617380 1.450000e-68 270.0
43 TraesCS1A01G363500 chr7D 81.006 537 47 23 627 1119 510375076 510375601 2.980000e-100 375.0
44 TraesCS1A01G363500 chr7D 94.262 122 7 0 1112 1233 510375627 510375748 1.500000e-43 187.0
45 TraesCS1A01G363500 chr7D 79.121 182 22 4 621 786 342403701 342403520 9.290000e-21 111.0
46 TraesCS1A01G363500 chr6B 86.919 344 34 7 2835 3167 612769857 612769514 2.980000e-100 375.0
47 TraesCS1A01G363500 chr6B 88.312 77 8 1 2835 2911 273772345 273772270 1.210000e-14 91.6
48 TraesCS1A01G363500 chr1D 84.078 358 21 12 1 323 447914710 447915066 2.370000e-81 313.0
49 TraesCS1A01G363500 chr1D 88.393 112 11 2 516 626 447915453 447915563 1.980000e-27 134.0
50 TraesCS1A01G363500 chr1D 72.687 227 52 8 1277 1502 144369000 144369217 2.040000e-07 67.6
51 TraesCS1A01G363500 chr3B 82.799 343 34 9 2836 3167 244220276 244219948 1.860000e-72 283.0
52 TraesCS1A01G363500 chr5B 78.261 345 35 17 2835 3167 583459322 583459006 5.390000e-43 185.0
53 TraesCS1A01G363500 chr2A 76.558 337 52 12 2835 3167 768522786 768523099 3.270000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G363500 chr1A 543966669 543969835 3166 False 5849.0 5849 100.0000 1 3167 1 chr1A.!!$F1 3166
1 TraesCS1A01G363500 chr1A 544031548 544032856 1308 False 2314.0 2314 98.5520 1529 2839 1 chr1A.!!$F2 1310
2 TraesCS1A01G363500 chr1B 329204676 329206201 1525 False 729.5 1205 85.9995 626 2165 2 chr1B.!!$F1 1539
3 TraesCS1A01G363500 chr1B 457029751 457030430 679 True 310.0 409 87.9760 626 1242 2 chr1B.!!$R3 616
4 TraesCS1A01G363500 chr1B 613341309 613341968 659 False 273.0 385 87.2940 4 626 2 chr1B.!!$F2 622
5 TraesCS1A01G363500 chr2B 757821565 757822549 984 False 1184.0 1184 88.2700 1160 2165 1 chr2B.!!$F2 1005
6 TraesCS1A01G363500 chr2B 757687435 757688960 1525 False 694.0 1164 84.8160 627 2165 2 chr2B.!!$F4 1538
7 TraesCS1A01G363500 chr3A 661625202 661625879 677 True 1079.0 1079 95.4480 2159 2834 1 chr3A.!!$R1 675
8 TraesCS1A01G363500 chr4D 417905496 417906167 671 False 1064.0 1064 95.2590 2162 2834 1 chr4D.!!$F2 672
9 TraesCS1A01G363500 chr4D 496810861 496811530 669 False 1062.0 1062 95.2590 2162 2834 1 chr4D.!!$F3 672
10 TraesCS1A01G363500 chr3D 376770833 376771501 668 True 1061.0 1061 95.2520 2163 2834 1 chr3D.!!$R1 671
11 TraesCS1A01G363500 chr3D 274634997 274636229 1232 True 359.0 503 90.3720 738 2165 2 chr3D.!!$R3 1427
12 TraesCS1A01G363500 chr3D 274422963 274424195 1232 True 356.0 497 90.2460 738 2165 2 chr3D.!!$R2 1427
13 TraesCS1A01G363500 chr5A 590437784 590438452 668 True 1059.0 1059 95.2380 2165 2834 1 chr5A.!!$R1 669
14 TraesCS1A01G363500 chr5A 619747393 619748063 670 False 1057.0 1057 95.1040 2164 2834 1 chr5A.!!$F1 670
15 TraesCS1A01G363500 chr2D 8438054 8438720 666 True 1057.0 1057 95.2310 2165 2833 1 chr2D.!!$R1 668
16 TraesCS1A01G363500 chr6D 453747771 453748439 668 True 1055.0 1055 95.1110 2163 2834 1 chr6D.!!$R3 671
17 TraesCS1A01G363500 chr7D 510375076 510375748 672 False 281.0 375 87.6340 627 1233 2 chr7D.!!$F1 606
18 TraesCS1A01G363500 chr1D 447914710 447915563 853 False 223.5 313 86.2355 1 626 2 chr1D.!!$F2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 739 0.318699 TCTGTTCACGTTCTGAGGCG 60.319 55.0 0.00 2.91 0.00 5.52 F
1245 1697 0.108377 ATGCGCCAACGACTACATCA 60.108 50.0 4.18 0.00 43.93 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1785 1.226660 GCTGTTGTTGTTGCTGCGT 60.227 52.632 0.00 0.00 0.00 5.24 R
2882 3372 0.033109 ATGCTTAAGTCAAGGGCCCC 60.033 55.000 21.43 1.95 34.56 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 35 1.184970 AAAAAGTGGGCGGGTGATGG 61.185 55.000 0.00 0.00 0.00 3.51
32 42 2.203209 GCGGGTGATGGATGGGAC 60.203 66.667 0.00 0.00 0.00 4.46
69 79 6.935741 TGTTAACACTAGCAACAGAAATGT 57.064 33.333 3.59 0.00 0.00 2.71
174 194 1.687123 AGCTGTCGTTGTGGTAGAACT 59.313 47.619 0.00 0.00 0.00 3.01
175 195 1.792949 GCTGTCGTTGTGGTAGAACTG 59.207 52.381 0.00 0.00 0.00 3.16
176 196 2.545113 GCTGTCGTTGTGGTAGAACTGA 60.545 50.000 0.00 0.00 0.00 3.41
177 197 3.861131 GCTGTCGTTGTGGTAGAACTGAT 60.861 47.826 0.00 0.00 0.00 2.90
201 221 4.166725 TGATTATTGGCAGTTGGATCCTCT 59.833 41.667 14.23 8.69 0.00 3.69
210 230 1.002069 TTGGATCCTCTTGGGCACAT 58.998 50.000 14.23 0.00 34.39 3.21
262 302 7.611855 AGATACTCGGAGAACAAAATGGATTTT 59.388 33.333 12.86 0.00 36.83 1.82
282 322 2.517959 TGGAACCAAGGAATTGCTCAG 58.482 47.619 0.00 0.00 0.00 3.35
291 331 3.825328 AGGAATTGCTCAGACACAACTT 58.175 40.909 0.00 0.00 0.00 2.66
293 333 4.037208 AGGAATTGCTCAGACACAACTTTG 59.963 41.667 0.00 0.00 0.00 2.77
297 337 6.639632 ATTGCTCAGACACAACTTTGTATT 57.360 33.333 0.00 0.00 39.91 1.89
304 344 6.375736 TCAGACACAACTTTGTATTCCAACAA 59.624 34.615 0.00 0.00 39.91 2.83
305 345 7.068103 TCAGACACAACTTTGTATTCCAACAAT 59.932 33.333 0.00 0.00 39.91 2.71
306 346 7.706179 CAGACACAACTTTGTATTCCAACAATT 59.294 33.333 0.00 0.00 39.91 2.32
307 347 8.908903 AGACACAACTTTGTATTCCAACAATTA 58.091 29.630 0.00 0.00 39.91 1.40
308 348 9.691362 GACACAACTTTGTATTCCAACAATTAT 57.309 29.630 0.00 0.00 39.91 1.28
309 349 9.474920 ACACAACTTTGTATTCCAACAATTATG 57.525 29.630 0.00 0.00 39.91 1.90
310 350 9.474920 CACAACTTTGTATTCCAACAATTATGT 57.525 29.630 0.00 0.00 39.66 2.29
325 365 6.953843 ACAATTATGTTTTTCTTTTTGCGGG 58.046 32.000 0.00 0.00 35.91 6.13
335 375 7.414814 TTTTCTTTTTGCGGGAACAATTATC 57.585 32.000 0.00 0.00 0.00 1.75
354 394 7.886629 ATTATCTTATTCTTTCTTGCCTGCA 57.113 32.000 0.00 0.00 0.00 4.41
371 411 2.591715 ATGGCGCCTACCAATCGC 60.592 61.111 29.70 0.00 44.65 4.58
375 415 3.234390 CGCCTACCAATCGCATCG 58.766 61.111 0.00 0.00 0.00 3.84
388 429 3.079960 TCGCATCGTATTCTCCTGTTC 57.920 47.619 0.00 0.00 0.00 3.18
415 456 3.719268 TGCACTTACCACAGAATCCAT 57.281 42.857 0.00 0.00 0.00 3.41
416 457 4.835284 TGCACTTACCACAGAATCCATA 57.165 40.909 0.00 0.00 0.00 2.74
417 458 4.513442 TGCACTTACCACAGAATCCATAC 58.487 43.478 0.00 0.00 0.00 2.39
418 459 4.225042 TGCACTTACCACAGAATCCATACT 59.775 41.667 0.00 0.00 0.00 2.12
419 460 5.423931 TGCACTTACCACAGAATCCATACTA 59.576 40.000 0.00 0.00 0.00 1.82
420 461 5.753921 GCACTTACCACAGAATCCATACTAC 59.246 44.000 0.00 0.00 0.00 2.73
431 472 8.062536 ACAGAATCCATACTACTACCTTCTCTT 58.937 37.037 0.00 0.00 0.00 2.85
454 495 7.769044 TCTTCTCCTCCGACCTTTTAATAAATG 59.231 37.037 0.00 0.00 0.00 2.32
473 517 9.547279 AATAAATGTAGGAATCCCTCAAAAGTT 57.453 29.630 0.00 0.00 43.14 2.66
490 534 6.038492 TCAAAAGTTAAAACTAGGAACCCACG 59.962 38.462 0.00 0.00 38.57 4.94
504 728 2.022129 CCACGCCGTCTCTGTTCAC 61.022 63.158 0.00 0.00 0.00 3.18
505 729 2.050351 ACGCCGTCTCTGTTCACG 60.050 61.111 0.00 0.00 35.72 4.35
506 730 2.050351 CGCCGTCTCTGTTCACGT 60.050 61.111 0.00 0.00 34.06 4.49
507 731 1.660575 CGCCGTCTCTGTTCACGTT 60.661 57.895 0.00 0.00 34.06 3.99
508 732 1.606350 CGCCGTCTCTGTTCACGTTC 61.606 60.000 0.00 0.00 34.06 3.95
511 735 1.001706 CCGTCTCTGTTCACGTTCTGA 60.002 52.381 0.00 0.00 34.06 3.27
512 736 2.311462 CGTCTCTGTTCACGTTCTGAG 58.689 52.381 10.56 10.56 0.00 3.35
514 738 1.000163 TCTCTGTTCACGTTCTGAGGC 60.000 52.381 14.30 0.00 32.90 4.70
515 739 0.318699 TCTGTTCACGTTCTGAGGCG 60.319 55.000 0.00 2.91 0.00 5.52
516 740 0.318699 CTGTTCACGTTCTGAGGCGA 60.319 55.000 9.94 0.00 0.00 5.54
518 742 1.006571 TTCACGTTCTGAGGCGACC 60.007 57.895 9.94 0.00 0.00 4.79
520 744 2.600769 ACGTTCTGAGGCGACCCT 60.601 61.111 9.94 0.00 46.74 4.34
552 823 8.313944 ACCCCTTAAAACTTAACTTTTCACAT 57.686 30.769 0.00 0.00 0.00 3.21
573 844 9.046296 TCACATTCTGAGAAGTTAAAACTCTTC 57.954 33.333 0.00 0.00 38.57 2.87
574 845 8.286097 CACATTCTGAGAAGTTAAAACTCTTCC 58.714 37.037 0.00 0.00 40.34 3.46
602 873 3.497332 AGCCCTTCTCCCAAAACTTAAC 58.503 45.455 0.00 0.00 0.00 2.01
635 906 8.419076 AATTTTGTTGTTTCTTTGTTAGCGAT 57.581 26.923 0.00 0.00 0.00 4.58
663 934 1.305297 TCTCGTCATGGGCTGGACT 60.305 57.895 0.00 0.00 31.88 3.85
670 941 0.825010 CATGGGCTGGACTATTGGGC 60.825 60.000 0.00 0.00 0.00 5.36
675 946 4.089239 TGGACTATTGGGCGCGCA 62.089 61.111 34.42 24.55 0.00 6.09
724 1005 5.176774 CAGCGACTACAAATACAAGTGAACA 59.823 40.000 0.00 0.00 0.00 3.18
916 1241 3.695830 TCCTTAGCCACGAAATTCTGT 57.304 42.857 0.00 0.00 0.00 3.41
979 1316 2.906691 ATTTCCTGGATCAGAGAGCG 57.093 50.000 0.00 0.00 32.44 5.03
999 1336 0.684535 TCGATCCAGCCTGTTCAACA 59.315 50.000 0.00 0.00 0.00 3.33
1069 1406 3.314331 CGGAGGACCACCAGCAGT 61.314 66.667 8.82 0.00 38.94 4.40
1081 1418 1.673477 CAGCAGTGCTACCTCACCA 59.327 57.895 19.26 0.00 36.40 4.17
1245 1697 0.108377 ATGCGCCAACGACTACATCA 60.108 50.000 4.18 0.00 43.93 3.07
1261 1713 2.154462 CATCAACCCCAACTGTGTCTC 58.846 52.381 0.00 0.00 0.00 3.36
1285 1737 0.865769 GGACGACAACGCATCTGTTT 59.134 50.000 0.00 0.00 43.96 2.83
1305 1757 1.078497 TGATGCATCCGTGGTGGTC 60.078 57.895 23.67 0.00 39.52 4.02
1333 1785 1.833630 AGAGATCGGCATCAACCTTCA 59.166 47.619 0.00 0.00 0.00 3.02
1356 1808 1.134753 CAGCAACAACAACAGCAGGAA 59.865 47.619 0.00 0.00 0.00 3.36
1400 1852 2.376808 ATTGAGAACAGAGACGCCAG 57.623 50.000 0.00 0.00 0.00 4.85
1443 1895 1.266718 GCCACATGTTCGACACAATGT 59.733 47.619 0.00 1.19 39.50 2.71
1444 1896 2.917714 GCCACATGTTCGACACAATGTG 60.918 50.000 12.40 12.40 40.72 3.21
1452 1904 1.654220 GACACAATGTGCAAGCCGT 59.346 52.632 14.01 0.00 36.98 5.68
1502 1954 2.912025 CCCCGCAACACCAGCTTT 60.912 61.111 0.00 0.00 0.00 3.51
2194 2677 0.676736 GGATGTCGCCTAGAAGGGAG 59.323 60.000 0.00 0.00 35.37 4.30
2195 2678 0.676736 GATGTCGCCTAGAAGGGAGG 59.323 60.000 0.00 0.00 35.37 4.30
2196 2679 0.760945 ATGTCGCCTAGAAGGGAGGG 60.761 60.000 0.00 0.00 35.37 4.30
2579 3068 1.074319 CACACAATGCAAGATGCCGC 61.074 55.000 0.00 0.00 44.23 6.53
2835 3325 0.331954 AGGAACGAGCTCTAGGGTCA 59.668 55.000 12.85 0.00 42.06 4.02
2836 3326 0.741915 GGAACGAGCTCTAGGGTCAG 59.258 60.000 12.85 0.00 42.06 3.51
2839 3329 2.494530 CGAGCTCTAGGGTCAGGGC 61.495 68.421 12.85 0.00 42.76 5.19
2840 3330 2.041405 AGCTCTAGGGTCAGGGCC 60.041 66.667 0.00 0.00 43.53 5.80
2841 3331 3.541713 GCTCTAGGGTCAGGGCCG 61.542 72.222 0.00 0.00 35.90 6.13
2842 3332 2.840102 CTCTAGGGTCAGGGCCGG 60.840 72.222 0.00 0.00 0.00 6.13
2843 3333 3.680196 TCTAGGGTCAGGGCCGGT 61.680 66.667 1.90 0.00 0.00 5.28
2844 3334 3.155167 CTAGGGTCAGGGCCGGTC 61.155 72.222 1.90 0.00 0.00 4.79
2845 3335 4.791069 TAGGGTCAGGGCCGGTCC 62.791 72.222 20.43 20.43 0.00 4.46
2852 3342 2.041265 AGGGCCGGTCCTGAGATT 59.959 61.111 31.20 0.00 35.47 2.40
2853 3343 1.616628 AGGGCCGGTCCTGAGATTT 60.617 57.895 31.20 0.00 35.47 2.17
2854 3344 1.153147 GGGCCGGTCCTGAGATTTC 60.153 63.158 20.78 0.00 34.39 2.17
2855 3345 1.521681 GGCCGGTCCTGAGATTTCG 60.522 63.158 1.90 0.00 0.00 3.46
2856 3346 1.521681 GCCGGTCCTGAGATTTCGG 60.522 63.158 1.90 0.00 36.58 4.30
2861 3351 2.193248 CCTGAGATTTCGGGGGCC 59.807 66.667 3.02 0.00 44.82 5.80
2862 3352 2.193248 CTGAGATTTCGGGGGCCC 59.807 66.667 15.76 15.76 0.00 5.80
2876 3366 2.360225 GCCCGGGGCGAAACTAAA 60.360 61.111 24.63 0.00 39.62 1.85
2877 3367 1.972752 GCCCGGGGCGAAACTAAAA 60.973 57.895 24.63 0.00 39.62 1.52
2878 3368 1.878070 CCCGGGGCGAAACTAAAAC 59.122 57.895 14.71 0.00 0.00 2.43
2879 3369 1.588824 CCCGGGGCGAAACTAAAACC 61.589 60.000 14.71 0.00 0.00 3.27
2880 3370 1.588824 CCGGGGCGAAACTAAAACCC 61.589 60.000 0.00 0.00 40.05 4.11
2881 3371 0.890090 CGGGGCGAAACTAAAACCCA 60.890 55.000 0.00 0.00 42.76 4.51
2882 3372 0.885879 GGGGCGAAACTAAAACCCAG 59.114 55.000 0.00 0.00 42.76 4.45
2883 3373 0.885879 GGGCGAAACTAAAACCCAGG 59.114 55.000 0.00 0.00 40.52 4.45
2884 3374 0.885879 GGCGAAACTAAAACCCAGGG 59.114 55.000 2.85 2.85 0.00 4.45
2885 3375 0.885879 GCGAAACTAAAACCCAGGGG 59.114 55.000 11.37 6.87 42.03 4.79
2886 3376 0.885879 CGAAACTAAAACCCAGGGGC 59.114 55.000 11.37 0.00 39.32 5.80
2887 3377 1.263356 GAAACTAAAACCCAGGGGCC 58.737 55.000 11.37 0.00 39.32 5.80
2888 3378 0.178915 AAACTAAAACCCAGGGGCCC 60.179 55.000 17.12 17.12 39.32 5.80
2889 3379 1.077901 AACTAAAACCCAGGGGCCCT 61.078 55.000 22.67 22.67 39.32 5.19
2890 3380 1.077901 ACTAAAACCCAGGGGCCCTT 61.078 55.000 26.34 12.72 39.32 3.95
2891 3381 0.614697 CTAAAACCCAGGGGCCCTTG 60.615 60.000 26.87 26.87 39.32 3.61
2892 3382 1.074895 TAAAACCCAGGGGCCCTTGA 61.075 55.000 34.48 11.24 39.32 3.02
2893 3383 2.673027 AAAACCCAGGGGCCCTTGAC 62.673 60.000 34.48 11.98 39.32 3.18
2894 3384 4.617595 ACCCAGGGGCCCTTGACT 62.618 66.667 34.48 16.00 39.32 3.41
2895 3385 3.268032 CCCAGGGGCCCTTGACTT 61.268 66.667 34.48 0.00 0.00 3.01
2896 3386 1.928567 CCCAGGGGCCCTTGACTTA 60.929 63.158 34.48 0.00 0.00 2.24
2897 3387 1.506028 CCCAGGGGCCCTTGACTTAA 61.506 60.000 34.48 0.00 0.00 1.85
2898 3388 0.034089 CCAGGGGCCCTTGACTTAAG 60.034 60.000 34.48 13.22 36.11 1.85
2899 3389 0.681243 CAGGGGCCCTTGACTTAAGC 60.681 60.000 29.70 3.26 34.96 3.09
2900 3390 1.140134 AGGGGCCCTTGACTTAAGCA 61.140 55.000 22.67 0.00 34.96 3.91
2901 3391 0.033109 GGGGCCCTTGACTTAAGCAT 60.033 55.000 24.38 0.00 34.96 3.79
2902 3392 1.393603 GGGCCCTTGACTTAAGCATC 58.606 55.000 17.04 0.00 34.96 3.91
2903 3393 1.017387 GGCCCTTGACTTAAGCATCG 58.983 55.000 1.29 0.00 34.96 3.84
2904 3394 1.406887 GGCCCTTGACTTAAGCATCGA 60.407 52.381 1.29 0.00 34.96 3.59
2905 3395 2.356135 GCCCTTGACTTAAGCATCGAA 58.644 47.619 1.29 0.00 34.96 3.71
2906 3396 2.747446 GCCCTTGACTTAAGCATCGAAA 59.253 45.455 1.29 0.00 34.96 3.46
2907 3397 3.378427 GCCCTTGACTTAAGCATCGAAAT 59.622 43.478 1.29 0.00 34.96 2.17
2908 3398 4.574828 GCCCTTGACTTAAGCATCGAAATA 59.425 41.667 1.29 0.00 34.96 1.40
2909 3399 5.065988 GCCCTTGACTTAAGCATCGAAATAA 59.934 40.000 1.29 0.00 34.96 1.40
2910 3400 6.238759 GCCCTTGACTTAAGCATCGAAATAAT 60.239 38.462 1.29 0.00 34.96 1.28
2911 3401 7.134815 CCCTTGACTTAAGCATCGAAATAATG 58.865 38.462 1.29 0.00 34.96 1.90
2912 3402 7.201732 CCCTTGACTTAAGCATCGAAATAATGT 60.202 37.037 1.29 0.00 34.96 2.71
2913 3403 7.641411 CCTTGACTTAAGCATCGAAATAATGTG 59.359 37.037 1.29 0.00 34.96 3.21
2914 3404 6.486248 TGACTTAAGCATCGAAATAATGTGC 58.514 36.000 1.29 0.00 36.11 4.57
2915 3405 5.501715 ACTTAAGCATCGAAATAATGTGCG 58.498 37.500 1.29 0.00 40.54 5.34
2916 3406 5.293324 ACTTAAGCATCGAAATAATGTGCGA 59.707 36.000 1.29 0.00 40.54 5.10
2917 3407 4.818534 AAGCATCGAAATAATGTGCGAT 57.181 36.364 0.00 0.00 43.45 4.58
2922 3412 5.749596 ATCGAAATAATGTGCGATGGAAA 57.250 34.783 0.00 0.00 41.38 3.13
2923 3413 5.553290 TCGAAATAATGTGCGATGGAAAA 57.447 34.783 0.00 0.00 0.00 2.29
2924 3414 5.944013 TCGAAATAATGTGCGATGGAAAAA 58.056 33.333 0.00 0.00 0.00 1.94
2946 3436 7.609760 AAAATAGACAAAGATGTACGATGCA 57.390 32.000 0.00 0.00 40.74 3.96
2947 3437 7.609760 AAATAGACAAAGATGTACGATGCAA 57.390 32.000 0.00 0.00 40.74 4.08
2948 3438 6.834959 ATAGACAAAGATGTACGATGCAAG 57.165 37.500 0.00 0.00 40.74 4.01
2949 3439 3.935203 AGACAAAGATGTACGATGCAAGG 59.065 43.478 0.00 0.00 40.74 3.61
2950 3440 2.420022 ACAAAGATGTACGATGCAAGGC 59.580 45.455 0.00 0.00 38.24 4.35
2951 3441 1.668419 AAGATGTACGATGCAAGGCC 58.332 50.000 0.00 0.00 0.00 5.19
2952 3442 0.541392 AGATGTACGATGCAAGGCCA 59.459 50.000 5.01 0.00 0.00 5.36
2953 3443 1.141657 AGATGTACGATGCAAGGCCAT 59.858 47.619 5.01 0.00 0.00 4.40
2954 3444 1.265095 GATGTACGATGCAAGGCCATG 59.735 52.381 5.01 3.85 0.00 3.66
2955 3445 0.035534 TGTACGATGCAAGGCCATGT 60.036 50.000 10.15 0.00 0.00 3.21
2956 3446 1.094785 GTACGATGCAAGGCCATGTT 58.905 50.000 10.15 0.00 0.00 2.71
2957 3447 1.472480 GTACGATGCAAGGCCATGTTT 59.528 47.619 10.15 0.00 0.00 2.83
2958 3448 1.832883 ACGATGCAAGGCCATGTTTA 58.167 45.000 10.15 0.00 0.00 2.01
2959 3449 1.745087 ACGATGCAAGGCCATGTTTAG 59.255 47.619 10.15 2.28 0.00 1.85
2960 3450 1.745087 CGATGCAAGGCCATGTTTAGT 59.255 47.619 10.15 0.00 0.00 2.24
2961 3451 2.478370 CGATGCAAGGCCATGTTTAGTG 60.478 50.000 10.15 0.00 0.00 2.74
2962 3452 1.993956 TGCAAGGCCATGTTTAGTGT 58.006 45.000 10.15 0.00 0.00 3.55
2963 3453 1.885887 TGCAAGGCCATGTTTAGTGTC 59.114 47.619 10.15 0.00 0.00 3.67
2964 3454 1.885887 GCAAGGCCATGTTTAGTGTCA 59.114 47.619 10.15 0.00 0.00 3.58
2965 3455 2.493278 GCAAGGCCATGTTTAGTGTCAT 59.507 45.455 10.15 0.00 0.00 3.06
2966 3456 3.674138 GCAAGGCCATGTTTAGTGTCATG 60.674 47.826 10.15 0.00 40.46 3.07
2967 3457 2.094675 AGGCCATGTTTAGTGTCATGC 58.905 47.619 5.01 0.00 39.74 4.06
2968 3458 2.094675 GGCCATGTTTAGTGTCATGCT 58.905 47.619 0.00 0.00 39.74 3.79
2969 3459 2.493278 GGCCATGTTTAGTGTCATGCTT 59.507 45.455 0.00 0.00 39.74 3.91
2970 3460 3.504863 GCCATGTTTAGTGTCATGCTTG 58.495 45.455 0.00 0.00 39.74 4.01
2971 3461 3.191162 GCCATGTTTAGTGTCATGCTTGA 59.809 43.478 0.00 0.00 39.74 3.02
2972 3462 4.321156 GCCATGTTTAGTGTCATGCTTGAA 60.321 41.667 3.51 0.00 39.74 2.69
2973 3463 5.156355 CCATGTTTAGTGTCATGCTTGAAC 58.844 41.667 3.51 5.54 39.74 3.18
2974 3464 5.048504 CCATGTTTAGTGTCATGCTTGAACT 60.049 40.000 3.51 11.76 39.74 3.01
2975 3465 6.149308 CCATGTTTAGTGTCATGCTTGAACTA 59.851 38.462 3.51 10.91 39.74 2.24
2976 3466 6.539649 TGTTTAGTGTCATGCTTGAACTAC 57.460 37.500 16.74 11.58 32.48 2.73
2977 3467 6.052360 TGTTTAGTGTCATGCTTGAACTACA 58.948 36.000 16.74 14.16 32.48 2.74
2978 3468 6.540551 TGTTTAGTGTCATGCTTGAACTACAA 59.459 34.615 16.74 13.30 36.97 2.41
2979 3469 6.539649 TTAGTGTCATGCTTGAACTACAAC 57.460 37.500 16.74 6.49 34.56 3.32
2980 3470 4.708177 AGTGTCATGCTTGAACTACAACT 58.292 39.130 3.51 0.00 34.56 3.16
2981 3471 4.512944 AGTGTCATGCTTGAACTACAACTG 59.487 41.667 3.51 0.00 34.56 3.16
2982 3472 4.273480 GTGTCATGCTTGAACTACAACTGT 59.727 41.667 3.51 0.00 34.56 3.55
2983 3473 4.881273 TGTCATGCTTGAACTACAACTGTT 59.119 37.500 3.51 0.00 34.56 3.16
2984 3474 5.207768 GTCATGCTTGAACTACAACTGTTG 58.792 41.667 18.44 18.44 34.56 3.33
2985 3475 4.275689 TCATGCTTGAACTACAACTGTTGG 59.724 41.667 23.15 9.91 34.56 3.77
2986 3476 3.879998 TGCTTGAACTACAACTGTTGGA 58.120 40.909 23.15 15.10 34.56 3.53
3001 3491 9.787435 ACAACTGTTGGAGTACATTATTTTAGA 57.213 29.630 23.15 0.00 33.09 2.10
3029 3519 8.928448 ACTATAGCAAAATGATAGAAGACTCCA 58.072 33.333 0.00 0.00 0.00 3.86
3030 3520 9.202273 CTATAGCAAAATGATAGAAGACTCCAC 57.798 37.037 0.00 0.00 0.00 4.02
3031 3521 4.872691 AGCAAAATGATAGAAGACTCCACG 59.127 41.667 0.00 0.00 0.00 4.94
3032 3522 4.870426 GCAAAATGATAGAAGACTCCACGA 59.130 41.667 0.00 0.00 0.00 4.35
3033 3523 5.351465 GCAAAATGATAGAAGACTCCACGAA 59.649 40.000 0.00 0.00 0.00 3.85
3034 3524 6.037610 GCAAAATGATAGAAGACTCCACGAAT 59.962 38.462 0.00 0.00 0.00 3.34
3035 3525 7.224753 GCAAAATGATAGAAGACTCCACGAATA 59.775 37.037 0.00 0.00 0.00 1.75
3036 3526 8.759641 CAAAATGATAGAAGACTCCACGAATAG 58.240 37.037 0.00 0.00 0.00 1.73
3037 3527 7.589958 AATGATAGAAGACTCCACGAATAGT 57.410 36.000 0.00 0.00 0.00 2.12
3038 3528 6.621316 TGATAGAAGACTCCACGAATAGTC 57.379 41.667 0.00 0.00 42.02 2.59
3039 3529 5.531659 TGATAGAAGACTCCACGAATAGTCC 59.468 44.000 10.63 0.49 42.56 3.85
3040 3530 3.970842 AGAAGACTCCACGAATAGTCCT 58.029 45.455 10.63 0.96 42.56 3.85
3041 3531 5.113446 AGAAGACTCCACGAATAGTCCTA 57.887 43.478 10.63 0.00 42.56 2.94
3042 3532 5.507637 AGAAGACTCCACGAATAGTCCTAA 58.492 41.667 10.63 0.00 42.56 2.69
3043 3533 5.950549 AGAAGACTCCACGAATAGTCCTAAA 59.049 40.000 10.63 0.00 42.56 1.85
3044 3534 6.436532 AGAAGACTCCACGAATAGTCCTAAAA 59.563 38.462 10.63 0.00 42.56 1.52
3045 3535 6.600882 AGACTCCACGAATAGTCCTAAAAA 57.399 37.500 10.63 0.00 42.56 1.94
3068 3558 3.932545 TTTGCGTCCAAATTGCATAGT 57.067 38.095 0.00 0.00 38.60 2.12
3069 3559 3.932545 TTGCGTCCAAATTGCATAGTT 57.067 38.095 0.00 0.00 38.60 2.24
3070 3560 3.214697 TGCGTCCAAATTGCATAGTTG 57.785 42.857 0.00 0.00 32.86 3.16
3071 3561 2.094803 TGCGTCCAAATTGCATAGTTGG 60.095 45.455 16.80 16.80 42.70 3.77
3072 3562 2.163412 GCGTCCAAATTGCATAGTTGGA 59.837 45.455 19.74 19.74 46.66 3.53
3077 3567 5.964758 TCCAAATTGCATAGTTGGATTCAC 58.035 37.500 19.74 0.00 44.57 3.18
3078 3568 5.479724 TCCAAATTGCATAGTTGGATTCACA 59.520 36.000 19.74 4.65 44.57 3.58
3079 3569 6.154877 TCCAAATTGCATAGTTGGATTCACAT 59.845 34.615 19.74 0.00 44.57 3.21
3080 3570 6.819649 CCAAATTGCATAGTTGGATTCACATT 59.180 34.615 17.57 0.00 43.82 2.71
3081 3571 7.334921 CCAAATTGCATAGTTGGATTCACATTT 59.665 33.333 17.57 1.04 43.82 2.32
3082 3572 8.723311 CAAATTGCATAGTTGGATTCACATTTT 58.277 29.630 0.00 0.00 0.00 1.82
3083 3573 8.851541 AATTGCATAGTTGGATTCACATTTTT 57.148 26.923 0.00 0.00 0.00 1.94
3084 3574 7.655236 TTGCATAGTTGGATTCACATTTTTG 57.345 32.000 0.00 0.00 0.00 2.44
3085 3575 6.990798 TGCATAGTTGGATTCACATTTTTGA 58.009 32.000 0.00 0.00 0.00 2.69
3086 3576 7.092079 TGCATAGTTGGATTCACATTTTTGAG 58.908 34.615 0.00 0.00 0.00 3.02
3087 3577 7.092716 GCATAGTTGGATTCACATTTTTGAGT 58.907 34.615 0.00 0.00 0.00 3.41
3088 3578 7.599998 GCATAGTTGGATTCACATTTTTGAGTT 59.400 33.333 0.00 0.00 0.00 3.01
3089 3579 9.132521 CATAGTTGGATTCACATTTTTGAGTTC 57.867 33.333 0.00 0.00 0.00 3.01
3090 3580 7.352079 AGTTGGATTCACATTTTTGAGTTCT 57.648 32.000 0.00 0.00 0.00 3.01
3091 3581 8.463930 AGTTGGATTCACATTTTTGAGTTCTA 57.536 30.769 0.00 0.00 0.00 2.10
3092 3582 8.571336 AGTTGGATTCACATTTTTGAGTTCTAG 58.429 33.333 0.00 0.00 0.00 2.43
3093 3583 7.452880 TGGATTCACATTTTTGAGTTCTAGG 57.547 36.000 0.00 0.00 0.00 3.02
3094 3584 7.230747 TGGATTCACATTTTTGAGTTCTAGGA 58.769 34.615 0.00 0.00 0.00 2.94
3095 3585 7.723616 TGGATTCACATTTTTGAGTTCTAGGAA 59.276 33.333 0.00 0.00 0.00 3.36
3096 3586 8.743714 GGATTCACATTTTTGAGTTCTAGGAAT 58.256 33.333 0.00 0.00 0.00 3.01
3097 3587 9.565213 GATTCACATTTTTGAGTTCTAGGAATG 57.435 33.333 0.00 0.00 0.00 2.67
3098 3588 8.690203 TTCACATTTTTGAGTTCTAGGAATGA 57.310 30.769 0.00 0.00 0.00 2.57
3099 3589 8.099364 TCACATTTTTGAGTTCTAGGAATGAC 57.901 34.615 0.00 0.00 0.00 3.06
3100 3590 7.939039 TCACATTTTTGAGTTCTAGGAATGACT 59.061 33.333 0.00 0.00 0.00 3.41
3101 3591 9.219603 CACATTTTTGAGTTCTAGGAATGACTA 57.780 33.333 0.00 0.00 0.00 2.59
3102 3592 9.965902 ACATTTTTGAGTTCTAGGAATGACTAT 57.034 29.630 0.00 0.00 0.00 2.12
3156 3646 7.957615 AGATAGATGATCAAAATTCATACGCG 58.042 34.615 3.53 3.53 36.98 6.01
3157 3647 5.991328 AGATGATCAAAATTCATACGCGT 57.009 34.783 19.17 19.17 34.03 6.01
3158 3648 5.741425 AGATGATCAAAATTCATACGCGTG 58.259 37.500 24.59 6.12 34.03 5.34
3159 3649 5.523552 AGATGATCAAAATTCATACGCGTGA 59.476 36.000 24.59 8.98 34.03 4.35
3160 3650 5.733226 TGATCAAAATTCATACGCGTGAT 57.267 34.783 24.59 12.51 0.00 3.06
3161 3651 5.500825 TGATCAAAATTCATACGCGTGATG 58.499 37.500 24.59 19.95 0.00 3.07
3162 3652 4.937696 TCAAAATTCATACGCGTGATGT 57.062 36.364 24.59 2.74 0.00 3.06
3163 3653 4.646960 TCAAAATTCATACGCGTGATGTG 58.353 39.130 24.59 15.00 0.00 3.21
3164 3654 3.673746 AAATTCATACGCGTGATGTGG 57.326 42.857 24.59 4.66 0.00 4.17
3165 3655 2.595124 ATTCATACGCGTGATGTGGA 57.405 45.000 24.59 10.52 0.00 4.02
3166 3656 2.371910 TTCATACGCGTGATGTGGAA 57.628 45.000 24.59 12.75 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.606313 CCATCACCCGCCCACTTTT 60.606 57.895 0.00 0.00 0.00 2.27
32 42 2.811431 TGTTAACAGCTCAAACGGGATG 59.189 45.455 3.59 0.00 0.00 3.51
34 44 2.158871 AGTGTTAACAGCTCAAACGGGA 60.159 45.455 8.98 0.00 0.00 5.14
152 164 0.319555 TCTACCACAACGACAGCTGC 60.320 55.000 15.27 5.81 0.00 5.25
174 194 5.302568 GGATCCAACTGCCAATAATCAATCA 59.697 40.000 6.95 0.00 0.00 2.57
175 195 5.537674 AGGATCCAACTGCCAATAATCAATC 59.462 40.000 15.82 0.00 0.00 2.67
176 196 5.461327 AGGATCCAACTGCCAATAATCAAT 58.539 37.500 15.82 0.00 0.00 2.57
177 197 4.870636 AGGATCCAACTGCCAATAATCAA 58.129 39.130 15.82 0.00 0.00 2.57
201 221 1.673168 GGCAACAAAAATGTGCCCAA 58.327 45.000 2.41 0.00 39.57 4.12
210 230 3.791973 ATCAGTTCACGGCAACAAAAA 57.208 38.095 2.06 0.00 0.00 1.94
262 302 2.108075 TCTGAGCAATTCCTTGGTTCCA 59.892 45.455 0.00 0.00 42.91 3.53
282 322 9.691362 ATAATTGTTGGAATACAAAGTTGTGTC 57.309 29.630 6.94 4.44 41.58 3.67
297 337 8.119226 CGCAAAAAGAAAAACATAATTGTTGGA 58.881 29.630 0.00 0.00 45.30 3.53
304 344 6.763610 TGTTCCCGCAAAAAGAAAAACATAAT 59.236 30.769 0.00 0.00 0.00 1.28
305 345 6.106673 TGTTCCCGCAAAAAGAAAAACATAA 58.893 32.000 0.00 0.00 0.00 1.90
306 346 5.661458 TGTTCCCGCAAAAAGAAAAACATA 58.339 33.333 0.00 0.00 0.00 2.29
307 347 4.508662 TGTTCCCGCAAAAAGAAAAACAT 58.491 34.783 0.00 0.00 0.00 2.71
308 348 3.926616 TGTTCCCGCAAAAAGAAAAACA 58.073 36.364 0.00 0.00 0.00 2.83
309 349 4.930463 TTGTTCCCGCAAAAAGAAAAAC 57.070 36.364 0.00 0.00 0.00 2.43
310 350 7.713073 AGATAATTGTTCCCGCAAAAAGAAAAA 59.287 29.630 0.00 0.00 31.63 1.94
311 351 7.213678 AGATAATTGTTCCCGCAAAAAGAAAA 58.786 30.769 0.00 0.00 31.63 2.29
312 352 6.754193 AGATAATTGTTCCCGCAAAAAGAAA 58.246 32.000 0.00 0.00 31.63 2.52
313 353 6.339587 AGATAATTGTTCCCGCAAAAAGAA 57.660 33.333 0.00 0.00 31.63 2.52
314 354 5.975693 AGATAATTGTTCCCGCAAAAAGA 57.024 34.783 0.00 0.00 31.63 2.52
315 355 8.702163 AATAAGATAATTGTTCCCGCAAAAAG 57.298 30.769 0.00 0.00 31.63 2.27
316 356 8.527810 AGAATAAGATAATTGTTCCCGCAAAAA 58.472 29.630 0.00 0.00 31.63 1.94
317 357 8.062065 AGAATAAGATAATTGTTCCCGCAAAA 57.938 30.769 0.00 0.00 31.63 2.44
318 358 7.639113 AGAATAAGATAATTGTTCCCGCAAA 57.361 32.000 0.00 0.00 31.63 3.68
319 359 7.639113 AAGAATAAGATAATTGTTCCCGCAA 57.361 32.000 0.00 0.00 0.00 4.85
320 360 7.556275 AGAAAGAATAAGATAATTGTTCCCGCA 59.444 33.333 0.00 0.00 0.00 5.69
321 361 7.931275 AGAAAGAATAAGATAATTGTTCCCGC 58.069 34.615 0.00 0.00 0.00 6.13
322 362 9.722056 CAAGAAAGAATAAGATAATTGTTCCCG 57.278 33.333 0.00 0.00 0.00 5.14
323 363 9.521503 GCAAGAAAGAATAAGATAATTGTTCCC 57.478 33.333 0.00 0.00 0.00 3.97
324 364 9.521503 GGCAAGAAAGAATAAGATAATTGTTCC 57.478 33.333 0.00 0.00 0.00 3.62
335 375 4.679662 CCATGCAGGCAAGAAAGAATAAG 58.320 43.478 0.00 0.00 0.00 1.73
354 394 2.591715 GCGATTGGTAGGCGCCAT 60.592 61.111 31.54 13.37 44.55 4.40
371 411 2.128035 GCCGAACAGGAGAATACGATG 58.872 52.381 0.00 0.00 45.00 3.84
372 412 1.754803 TGCCGAACAGGAGAATACGAT 59.245 47.619 0.00 0.00 45.00 3.73
373 413 1.134367 CTGCCGAACAGGAGAATACGA 59.866 52.381 0.00 0.00 45.00 3.43
374 414 1.560923 CTGCCGAACAGGAGAATACG 58.439 55.000 0.00 0.00 45.00 3.06
415 456 5.163322 CGGAGGAGAAGAGAAGGTAGTAGTA 60.163 48.000 0.00 0.00 0.00 1.82
416 457 4.384427 CGGAGGAGAAGAGAAGGTAGTAGT 60.384 50.000 0.00 0.00 0.00 2.73
417 458 4.131596 CGGAGGAGAAGAGAAGGTAGTAG 58.868 52.174 0.00 0.00 0.00 2.57
418 459 3.779183 TCGGAGGAGAAGAGAAGGTAGTA 59.221 47.826 0.00 0.00 0.00 1.82
419 460 2.577105 TCGGAGGAGAAGAGAAGGTAGT 59.423 50.000 0.00 0.00 0.00 2.73
420 461 2.946990 GTCGGAGGAGAAGAGAAGGTAG 59.053 54.545 0.00 0.00 0.00 3.18
431 472 6.954232 ACATTTATTAAAAGGTCGGAGGAGA 58.046 36.000 0.00 0.00 34.68 3.71
454 495 8.405418 AGTTTTAACTTTTGAGGGATTCCTAC 57.595 34.615 0.00 0.00 38.85 3.18
471 512 2.485426 GGCGTGGGTTCCTAGTTTTAAC 59.515 50.000 0.00 0.00 0.00 2.01
472 513 2.781923 GGCGTGGGTTCCTAGTTTTAA 58.218 47.619 0.00 0.00 0.00 1.52
473 517 1.338011 CGGCGTGGGTTCCTAGTTTTA 60.338 52.381 0.00 0.00 0.00 1.52
490 534 0.318784 AGAACGTGAACAGAGACGGC 60.319 55.000 0.00 0.00 39.94 5.68
504 728 2.154798 TTGAGGGTCGCCTCAGAACG 62.155 60.000 11.05 0.00 45.83 3.95
505 729 0.034896 TTTGAGGGTCGCCTCAGAAC 59.965 55.000 11.05 0.00 45.83 3.01
506 730 0.984230 ATTTGAGGGTCGCCTCAGAA 59.016 50.000 11.05 9.38 45.83 3.02
507 731 0.250234 CATTTGAGGGTCGCCTCAGA 59.750 55.000 11.05 8.06 45.83 3.27
508 732 0.250234 TCATTTGAGGGTCGCCTCAG 59.750 55.000 11.05 2.16 45.83 3.35
511 735 1.299976 GGTCATTTGAGGGTCGCCT 59.700 57.895 0.00 0.00 0.00 5.52
512 736 1.749258 GGGTCATTTGAGGGTCGCC 60.749 63.158 0.00 0.00 0.00 5.54
514 738 0.328258 AAGGGGTCATTTGAGGGTCG 59.672 55.000 0.00 0.00 0.00 4.79
515 739 3.732048 TTAAGGGGTCATTTGAGGGTC 57.268 47.619 0.00 0.00 0.00 4.46
516 740 4.140782 AGTTTTAAGGGGTCATTTGAGGGT 60.141 41.667 0.00 0.00 0.00 4.34
518 742 7.232737 AGTTAAGTTTTAAGGGGTCATTTGAGG 59.767 37.037 0.00 0.00 0.00 3.86
520 744 8.541899 AAGTTAAGTTTTAAGGGGTCATTTGA 57.458 30.769 0.00 0.00 0.00 2.69
552 823 5.465724 GCGGAAGAGTTTTAACTTCTCAGAA 59.534 40.000 0.00 0.00 39.88 3.02
559 830 3.816994 AGGTGCGGAAGAGTTTTAACTT 58.183 40.909 0.00 0.00 39.88 2.66
573 844 2.501610 GAGAAGGGCTAGGTGCGG 59.498 66.667 0.00 0.00 44.05 5.69
574 845 2.501610 GGAGAAGGGCTAGGTGCG 59.498 66.667 0.00 0.00 44.05 5.34
602 873 7.714813 ACAAAGAAACAACAAAATTATGGGAGG 59.285 33.333 0.00 0.00 0.00 4.30
663 934 1.240641 CCCAATATGCGCGCCCAATA 61.241 55.000 30.77 20.05 0.00 1.90
670 941 3.663176 CCAGGCCCAATATGCGCG 61.663 66.667 0.00 0.00 0.00 6.86
675 946 2.199535 GCAGCCCAGGCCCAATAT 59.800 61.111 4.70 0.00 43.17 1.28
724 1005 3.880168 AATCCTAGTAGTCCGTAGCCT 57.120 47.619 0.00 0.00 0.00 4.58
916 1241 7.189079 AGAAGTTGGGGAAATTTTTGTACAA 57.811 32.000 3.59 3.59 0.00 2.41
979 1316 1.079503 GTTGAACAGGCTGGATCGAC 58.920 55.000 20.34 20.34 0.00 4.20
1069 1406 2.066340 CCCACTTGGTGAGGTAGCA 58.934 57.895 0.00 0.00 35.23 3.49
1081 1418 4.021925 GCTCTGGTCCGCCCACTT 62.022 66.667 0.00 0.00 38.72 3.16
1245 1697 0.474184 CCAGAGACACAGTTGGGGTT 59.526 55.000 0.00 0.00 0.00 4.11
1285 1737 1.221566 CCACCACGGATGCATCAGA 59.778 57.895 29.91 0.00 36.56 3.27
1333 1785 1.226660 GCTGTTGTTGTTGCTGCGT 60.227 52.632 0.00 0.00 0.00 5.24
1356 1808 4.880537 CGCGGCGCATCCTCTTCT 62.881 66.667 32.61 0.00 0.00 2.85
1486 1938 2.336088 CAAAGCTGGTGTTGCGGG 59.664 61.111 0.00 0.00 35.28 6.13
1502 1954 1.542328 CGTTGATGGTGACCTTGGACA 60.542 52.381 2.11 0.00 0.00 4.02
2579 3068 1.497161 AGGGTCCCTTAGTGGAATCG 58.503 55.000 3.85 0.00 35.80 3.34
2835 3325 1.616628 AAATCTCAGGACCGGCCCT 60.617 57.895 2.07 2.07 37.37 5.19
2836 3326 1.153147 GAAATCTCAGGACCGGCCC 60.153 63.158 0.00 0.00 37.37 5.80
2839 3329 1.144057 CCCGAAATCTCAGGACCGG 59.856 63.158 0.00 0.00 34.41 5.28
2840 3330 1.144057 CCCCGAAATCTCAGGACCG 59.856 63.158 0.00 0.00 0.00 4.79
2841 3331 1.527370 CCCCCGAAATCTCAGGACC 59.473 63.158 0.00 0.00 0.00 4.46
2842 3332 1.153147 GCCCCCGAAATCTCAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
2843 3333 2.375345 GGCCCCCGAAATCTCAGGA 61.375 63.158 0.00 0.00 0.00 3.86
2844 3334 2.193248 GGCCCCCGAAATCTCAGG 59.807 66.667 0.00 0.00 0.00 3.86
2845 3335 2.193248 GGGCCCCCGAAATCTCAG 59.807 66.667 12.23 0.00 0.00 3.35
2859 3349 1.972752 TTTTAGTTTCGCCCCGGGC 60.973 57.895 19.64 19.64 46.75 6.13
2860 3350 1.588824 GGTTTTAGTTTCGCCCCGGG 61.589 60.000 15.80 15.80 0.00 5.73
2861 3351 1.588824 GGGTTTTAGTTTCGCCCCGG 61.589 60.000 0.00 0.00 33.40 5.73
2862 3352 0.890090 TGGGTTTTAGTTTCGCCCCG 60.890 55.000 0.00 0.00 38.57 5.73
2863 3353 0.885879 CTGGGTTTTAGTTTCGCCCC 59.114 55.000 0.00 0.00 38.57 5.80
2864 3354 0.885879 CCTGGGTTTTAGTTTCGCCC 59.114 55.000 0.00 0.00 39.73 6.13
2865 3355 0.885879 CCCTGGGTTTTAGTTTCGCC 59.114 55.000 3.97 0.00 0.00 5.54
2866 3356 0.885879 CCCCTGGGTTTTAGTTTCGC 59.114 55.000 12.71 0.00 0.00 4.70
2867 3357 0.885879 GCCCCTGGGTTTTAGTTTCG 59.114 55.000 12.71 0.00 37.65 3.46
2868 3358 1.263356 GGCCCCTGGGTTTTAGTTTC 58.737 55.000 12.71 0.00 37.65 2.78
2869 3359 0.178915 GGGCCCCTGGGTTTTAGTTT 60.179 55.000 12.23 0.00 37.65 2.66
2870 3360 1.077901 AGGGCCCCTGGGTTTTAGTT 61.078 55.000 21.43 0.00 37.65 2.24
2871 3361 1.077901 AAGGGCCCCTGGGTTTTAGT 61.078 55.000 21.43 0.00 37.65 2.24
2872 3362 0.614697 CAAGGGCCCCTGGGTTTTAG 60.615 60.000 21.43 0.00 37.65 1.85
2873 3363 1.074895 TCAAGGGCCCCTGGGTTTTA 61.075 55.000 21.43 0.00 37.65 1.52
2874 3364 2.204034 CAAGGGCCCCTGGGTTTT 59.796 61.111 21.43 0.00 37.65 2.43
2875 3365 2.785389 TCAAGGGCCCCTGGGTTT 60.785 61.111 21.43 0.83 37.65 3.27
2876 3366 3.590574 GTCAAGGGCCCCTGGGTT 61.591 66.667 21.43 1.77 37.65 4.11
2877 3367 2.723334 TAAGTCAAGGGCCCCTGGGT 62.723 60.000 21.43 7.39 37.65 4.51
2878 3368 1.506028 TTAAGTCAAGGGCCCCTGGG 61.506 60.000 21.43 5.50 32.13 4.45
2879 3369 0.034089 CTTAAGTCAAGGGCCCCTGG 60.034 60.000 21.43 0.00 32.13 4.45
2880 3370 0.681243 GCTTAAGTCAAGGGCCCCTG 60.681 60.000 21.43 17.96 34.56 4.45
2881 3371 1.140134 TGCTTAAGTCAAGGGCCCCT 61.140 55.000 21.43 0.58 34.56 4.79
2882 3372 0.033109 ATGCTTAAGTCAAGGGCCCC 60.033 55.000 21.43 1.95 34.56 5.80
2883 3373 1.393603 GATGCTTAAGTCAAGGGCCC 58.606 55.000 16.46 16.46 34.56 5.80
2884 3374 1.017387 CGATGCTTAAGTCAAGGGCC 58.983 55.000 4.02 0.00 34.56 5.80
2885 3375 2.024176 TCGATGCTTAAGTCAAGGGC 57.976 50.000 4.02 0.00 34.56 5.19
2886 3376 6.677781 TTATTTCGATGCTTAAGTCAAGGG 57.322 37.500 4.02 0.00 34.56 3.95
2887 3377 7.641411 CACATTATTTCGATGCTTAAGTCAAGG 59.359 37.037 4.02 0.47 34.56 3.61
2888 3378 7.164826 GCACATTATTTCGATGCTTAAGTCAAG 59.835 37.037 4.02 2.72 37.31 3.02
2889 3379 6.966632 GCACATTATTTCGATGCTTAAGTCAA 59.033 34.615 4.02 0.00 33.44 3.18
2890 3380 6.486248 GCACATTATTTCGATGCTTAAGTCA 58.514 36.000 4.02 3.28 33.44 3.41
2891 3381 5.617187 CGCACATTATTTCGATGCTTAAGTC 59.383 40.000 4.02 0.00 34.06 3.01
2892 3382 5.293324 TCGCACATTATTTCGATGCTTAAGT 59.707 36.000 4.02 0.00 34.06 2.24
2893 3383 5.737353 TCGCACATTATTTCGATGCTTAAG 58.263 37.500 0.00 0.00 34.06 1.85
2894 3384 5.726729 TCGCACATTATTTCGATGCTTAA 57.273 34.783 3.69 0.00 34.06 1.85
2895 3385 5.922739 ATCGCACATTATTTCGATGCTTA 57.077 34.783 3.69 0.00 39.78 3.09
2896 3386 4.818534 ATCGCACATTATTTCGATGCTT 57.181 36.364 3.69 0.00 39.78 3.91
2900 3390 5.749596 TTTCCATCGCACATTATTTCGAT 57.250 34.783 0.00 0.00 41.66 3.59
2901 3391 5.553290 TTTTCCATCGCACATTATTTCGA 57.447 34.783 0.00 0.00 35.34 3.71
2921 3411 8.039603 TGCATCGTACATCTTTGTCTATTTTT 57.960 30.769 0.00 0.00 37.28 1.94
2922 3412 7.609760 TGCATCGTACATCTTTGTCTATTTT 57.390 32.000 0.00 0.00 37.28 1.82
2923 3413 7.201644 CCTTGCATCGTACATCTTTGTCTATTT 60.202 37.037 0.00 0.00 37.28 1.40
2924 3414 6.258727 CCTTGCATCGTACATCTTTGTCTATT 59.741 38.462 0.00 0.00 37.28 1.73
2925 3415 5.755375 CCTTGCATCGTACATCTTTGTCTAT 59.245 40.000 0.00 0.00 37.28 1.98
2926 3416 5.109210 CCTTGCATCGTACATCTTTGTCTA 58.891 41.667 0.00 0.00 37.28 2.59
2927 3417 3.935203 CCTTGCATCGTACATCTTTGTCT 59.065 43.478 0.00 0.00 37.28 3.41
2928 3418 3.485877 GCCTTGCATCGTACATCTTTGTC 60.486 47.826 0.00 0.00 37.28 3.18
2929 3419 2.420022 GCCTTGCATCGTACATCTTTGT 59.580 45.455 0.00 0.00 39.98 2.83
2930 3420 2.223340 GGCCTTGCATCGTACATCTTTG 60.223 50.000 0.00 0.00 0.00 2.77
2931 3421 2.017049 GGCCTTGCATCGTACATCTTT 58.983 47.619 0.00 0.00 0.00 2.52
2932 3422 1.065491 TGGCCTTGCATCGTACATCTT 60.065 47.619 3.32 0.00 0.00 2.40
2933 3423 0.541392 TGGCCTTGCATCGTACATCT 59.459 50.000 3.32 0.00 0.00 2.90
2934 3424 1.265095 CATGGCCTTGCATCGTACATC 59.735 52.381 3.32 0.00 0.00 3.06
2935 3425 1.311859 CATGGCCTTGCATCGTACAT 58.688 50.000 3.32 0.00 0.00 2.29
2936 3426 0.035534 ACATGGCCTTGCATCGTACA 60.036 50.000 18.17 0.00 0.00 2.90
2937 3427 1.094785 AACATGGCCTTGCATCGTAC 58.905 50.000 18.17 0.00 0.00 3.67
2938 3428 1.832883 AAACATGGCCTTGCATCGTA 58.167 45.000 18.17 0.00 0.00 3.43
2939 3429 1.745087 CTAAACATGGCCTTGCATCGT 59.255 47.619 18.17 2.53 0.00 3.73
2940 3430 1.745087 ACTAAACATGGCCTTGCATCG 59.255 47.619 18.17 7.61 0.00 3.84
2941 3431 2.493278 ACACTAAACATGGCCTTGCATC 59.507 45.455 18.17 0.00 0.00 3.91
2942 3432 2.493278 GACACTAAACATGGCCTTGCAT 59.507 45.455 18.17 9.85 0.00 3.96
2943 3433 1.885887 GACACTAAACATGGCCTTGCA 59.114 47.619 18.17 3.58 0.00 4.08
2944 3434 1.885887 TGACACTAAACATGGCCTTGC 59.114 47.619 18.17 0.56 0.00 4.01
2945 3435 3.674138 GCATGACACTAAACATGGCCTTG 60.674 47.826 16.76 16.76 42.53 3.61
2946 3436 2.493278 GCATGACACTAAACATGGCCTT 59.507 45.455 3.32 0.00 42.53 4.35
2947 3437 2.094675 GCATGACACTAAACATGGCCT 58.905 47.619 3.32 0.00 42.53 5.19
2948 3438 2.094675 AGCATGACACTAAACATGGCC 58.905 47.619 0.00 0.00 42.53 5.36
2949 3439 3.191162 TCAAGCATGACACTAAACATGGC 59.809 43.478 0.00 0.00 42.53 4.40
2950 3440 5.048504 AGTTCAAGCATGACACTAAACATGG 60.049 40.000 0.00 0.00 42.53 3.66
2951 3441 6.005583 AGTTCAAGCATGACACTAAACATG 57.994 37.500 0.00 0.00 44.32 3.21
2952 3442 6.710295 TGTAGTTCAAGCATGACACTAAACAT 59.290 34.615 12.39 0.00 34.24 2.71
2953 3443 6.052360 TGTAGTTCAAGCATGACACTAAACA 58.948 36.000 12.39 9.12 34.24 2.83
2954 3444 6.539649 TGTAGTTCAAGCATGACACTAAAC 57.460 37.500 12.39 7.41 34.24 2.01
2955 3445 6.765989 AGTTGTAGTTCAAGCATGACACTAAA 59.234 34.615 12.39 7.41 36.66 1.85
2956 3446 6.202762 CAGTTGTAGTTCAAGCATGACACTAA 59.797 38.462 12.39 2.56 36.66 2.24
2957 3447 5.696270 CAGTTGTAGTTCAAGCATGACACTA 59.304 40.000 0.00 0.99 36.66 2.74
2958 3448 4.512944 CAGTTGTAGTTCAAGCATGACACT 59.487 41.667 0.00 10.22 36.66 3.55
2959 3449 4.273480 ACAGTTGTAGTTCAAGCATGACAC 59.727 41.667 0.00 0.00 36.66 3.67
2960 3450 4.450976 ACAGTTGTAGTTCAAGCATGACA 58.549 39.130 0.00 0.00 36.66 3.58
2961 3451 5.207768 CAACAGTTGTAGTTCAAGCATGAC 58.792 41.667 4.99 0.00 36.66 3.06
2962 3452 4.275689 CCAACAGTTGTAGTTCAAGCATGA 59.724 41.667 12.42 0.00 36.66 3.07
2963 3453 4.275689 TCCAACAGTTGTAGTTCAAGCATG 59.724 41.667 12.42 0.00 36.66 4.06
2964 3454 4.460263 TCCAACAGTTGTAGTTCAAGCAT 58.540 39.130 12.42 0.00 36.66 3.79
2965 3455 3.876914 CTCCAACAGTTGTAGTTCAAGCA 59.123 43.478 12.42 0.00 36.66 3.91
2966 3456 3.877508 ACTCCAACAGTTGTAGTTCAAGC 59.122 43.478 12.42 0.00 36.66 4.01
2967 3457 6.046593 TGTACTCCAACAGTTGTAGTTCAAG 58.953 40.000 15.99 3.17 36.43 3.02
2968 3458 5.979993 TGTACTCCAACAGTTGTAGTTCAA 58.020 37.500 15.99 0.00 36.43 2.69
2969 3459 5.601583 TGTACTCCAACAGTTGTAGTTCA 57.398 39.130 15.99 14.09 36.43 3.18
2970 3460 8.773404 ATAATGTACTCCAACAGTTGTAGTTC 57.227 34.615 15.99 11.82 36.43 3.01
2971 3461 9.569122 AAATAATGTACTCCAACAGTTGTAGTT 57.431 29.630 15.99 2.06 36.43 2.24
2972 3462 9.569122 AAAATAATGTACTCCAACAGTTGTAGT 57.431 29.630 15.22 15.22 36.43 2.73
2975 3465 9.787435 TCTAAAATAATGTACTCCAACAGTTGT 57.213 29.630 12.42 0.00 36.43 3.32
3003 3493 8.928448 TGGAGTCTTCTATCATTTTGCTATAGT 58.072 33.333 0.84 0.00 0.00 2.12
3004 3494 9.202273 GTGGAGTCTTCTATCATTTTGCTATAG 57.798 37.037 0.00 0.00 0.00 1.31
3005 3495 7.867909 CGTGGAGTCTTCTATCATTTTGCTATA 59.132 37.037 0.00 0.00 0.00 1.31
3006 3496 6.703607 CGTGGAGTCTTCTATCATTTTGCTAT 59.296 38.462 0.00 0.00 0.00 2.97
3007 3497 6.042777 CGTGGAGTCTTCTATCATTTTGCTA 58.957 40.000 0.00 0.00 0.00 3.49
3008 3498 4.872691 CGTGGAGTCTTCTATCATTTTGCT 59.127 41.667 0.00 0.00 0.00 3.91
3009 3499 4.870426 TCGTGGAGTCTTCTATCATTTTGC 59.130 41.667 0.00 0.00 0.00 3.68
3010 3500 6.968131 TTCGTGGAGTCTTCTATCATTTTG 57.032 37.500 0.00 0.00 0.00 2.44
3011 3501 8.478877 ACTATTCGTGGAGTCTTCTATCATTTT 58.521 33.333 0.00 0.00 0.00 1.82
3012 3502 8.012957 ACTATTCGTGGAGTCTTCTATCATTT 57.987 34.615 0.00 0.00 0.00 2.32
3013 3503 7.255660 GGACTATTCGTGGAGTCTTCTATCATT 60.256 40.741 11.29 0.00 0.00 2.57
3014 3504 6.207810 GGACTATTCGTGGAGTCTTCTATCAT 59.792 42.308 11.29 0.00 0.00 2.45
3015 3505 5.531659 GGACTATTCGTGGAGTCTTCTATCA 59.468 44.000 11.29 0.00 0.00 2.15
3016 3506 5.766174 AGGACTATTCGTGGAGTCTTCTATC 59.234 44.000 11.29 0.00 0.00 2.08
3017 3507 5.697067 AGGACTATTCGTGGAGTCTTCTAT 58.303 41.667 11.29 0.00 0.00 1.98
3018 3508 5.113446 AGGACTATTCGTGGAGTCTTCTA 57.887 43.478 11.29 0.00 0.00 2.10
3019 3509 3.970842 AGGACTATTCGTGGAGTCTTCT 58.029 45.455 11.29 1.85 0.00 2.85
3020 3510 5.831702 TTAGGACTATTCGTGGAGTCTTC 57.168 43.478 11.29 0.07 0.00 2.87
3021 3511 6.600882 TTTTAGGACTATTCGTGGAGTCTT 57.399 37.500 11.29 7.78 0.00 3.01
3022 3512 6.600882 TTTTTAGGACTATTCGTGGAGTCT 57.399 37.500 11.29 3.54 0.00 3.24
3043 3533 4.889832 TGCAATTTGGACGCAAATTTTT 57.110 31.818 10.02 0.00 41.27 1.94
3044 3534 5.700373 ACTATGCAATTTGGACGCAAATTTT 59.300 32.000 10.02 3.57 41.27 1.82
3045 3535 5.237048 ACTATGCAATTTGGACGCAAATTT 58.763 33.333 10.02 0.00 41.27 1.82
3046 3536 4.819769 ACTATGCAATTTGGACGCAAATT 58.180 34.783 7.63 7.63 43.21 1.82
3047 3537 4.454728 ACTATGCAATTTGGACGCAAAT 57.545 36.364 0.00 0.00 39.48 2.32
3048 3538 3.932545 ACTATGCAATTTGGACGCAAA 57.067 38.095 0.00 0.00 39.48 3.68
3049 3539 3.573598 CAACTATGCAATTTGGACGCAA 58.426 40.909 0.00 0.00 39.48 4.85
3050 3540 2.094803 CCAACTATGCAATTTGGACGCA 60.095 45.455 15.86 0.00 42.17 5.24
3051 3541 2.163412 TCCAACTATGCAATTTGGACGC 59.837 45.455 18.39 0.00 43.13 5.19
3055 3545 5.722263 TGTGAATCCAACTATGCAATTTGG 58.278 37.500 15.09 15.09 41.12 3.28
3056 3546 7.837202 AATGTGAATCCAACTATGCAATTTG 57.163 32.000 0.00 0.00 0.00 2.32
3057 3547 8.851541 AAAATGTGAATCCAACTATGCAATTT 57.148 26.923 0.00 0.00 0.00 1.82
3058 3548 8.723311 CAAAAATGTGAATCCAACTATGCAATT 58.277 29.630 0.00 0.00 0.00 2.32
3059 3549 8.095792 TCAAAAATGTGAATCCAACTATGCAAT 58.904 29.630 0.00 0.00 0.00 3.56
3060 3550 7.440198 TCAAAAATGTGAATCCAACTATGCAA 58.560 30.769 0.00 0.00 0.00 4.08
3061 3551 6.990798 TCAAAAATGTGAATCCAACTATGCA 58.009 32.000 0.00 0.00 0.00 3.96
3062 3552 7.092716 ACTCAAAAATGTGAATCCAACTATGC 58.907 34.615 0.00 0.00 0.00 3.14
3063 3553 9.132521 GAACTCAAAAATGTGAATCCAACTATG 57.867 33.333 0.00 0.00 0.00 2.23
3064 3554 9.082313 AGAACTCAAAAATGTGAATCCAACTAT 57.918 29.630 0.00 0.00 0.00 2.12
3065 3555 8.463930 AGAACTCAAAAATGTGAATCCAACTA 57.536 30.769 0.00 0.00 0.00 2.24
3066 3556 7.352079 AGAACTCAAAAATGTGAATCCAACT 57.648 32.000 0.00 0.00 0.00 3.16
3067 3557 7.809806 CCTAGAACTCAAAAATGTGAATCCAAC 59.190 37.037 0.00 0.00 0.00 3.77
3068 3558 7.723616 TCCTAGAACTCAAAAATGTGAATCCAA 59.276 33.333 0.00 0.00 0.00 3.53
3069 3559 7.230747 TCCTAGAACTCAAAAATGTGAATCCA 58.769 34.615 0.00 0.00 0.00 3.41
3070 3560 7.687941 TCCTAGAACTCAAAAATGTGAATCC 57.312 36.000 0.00 0.00 0.00 3.01
3071 3561 9.565213 CATTCCTAGAACTCAAAAATGTGAATC 57.435 33.333 0.00 0.00 0.00 2.52
3072 3562 9.300681 TCATTCCTAGAACTCAAAAATGTGAAT 57.699 29.630 0.00 0.00 0.00 2.57
3073 3563 8.567948 GTCATTCCTAGAACTCAAAAATGTGAA 58.432 33.333 0.00 0.00 0.00 3.18
3074 3564 7.939039 AGTCATTCCTAGAACTCAAAAATGTGA 59.061 33.333 0.00 0.00 0.00 3.58
3075 3565 8.103948 AGTCATTCCTAGAACTCAAAAATGTG 57.896 34.615 0.00 0.00 0.00 3.21
3076 3566 9.965902 ATAGTCATTCCTAGAACTCAAAAATGT 57.034 29.630 0.00 0.00 0.00 2.71
3130 3620 9.076596 CGCGTATGAATTTTGATCATCTATCTA 57.923 33.333 0.00 0.00 38.44 1.98
3131 3621 7.600375 ACGCGTATGAATTTTGATCATCTATCT 59.400 33.333 11.67 0.00 38.44 1.98
3132 3622 7.685712 CACGCGTATGAATTTTGATCATCTATC 59.314 37.037 13.44 0.00 38.44 2.08
3133 3623 7.384932 TCACGCGTATGAATTTTGATCATCTAT 59.615 33.333 13.44 0.00 38.44 1.98
3134 3624 6.699642 TCACGCGTATGAATTTTGATCATCTA 59.300 34.615 13.44 0.00 38.44 1.98
3135 3625 5.523552 TCACGCGTATGAATTTTGATCATCT 59.476 36.000 13.44 0.00 38.44 2.90
3136 3626 5.737353 TCACGCGTATGAATTTTGATCATC 58.263 37.500 13.44 0.00 38.44 2.92
3137 3627 5.733226 TCACGCGTATGAATTTTGATCAT 57.267 34.783 13.44 0.00 40.49 2.45
3138 3628 5.064579 ACATCACGCGTATGAATTTTGATCA 59.935 36.000 25.20 0.00 30.82 2.92
3139 3629 5.393452 CACATCACGCGTATGAATTTTGATC 59.607 40.000 25.20 0.00 30.82 2.92
3140 3630 5.265477 CACATCACGCGTATGAATTTTGAT 58.735 37.500 25.20 14.04 30.82 2.57
3141 3631 4.436718 CCACATCACGCGTATGAATTTTGA 60.437 41.667 25.20 12.59 30.82 2.69
3142 3632 3.785521 CCACATCACGCGTATGAATTTTG 59.214 43.478 25.20 16.25 30.82 2.44
3143 3633 3.687212 TCCACATCACGCGTATGAATTTT 59.313 39.130 25.20 8.46 30.82 1.82
3144 3634 3.266636 TCCACATCACGCGTATGAATTT 58.733 40.909 25.20 8.73 30.82 1.82
3145 3635 2.899976 TCCACATCACGCGTATGAATT 58.100 42.857 25.20 6.65 30.82 2.17
3146 3636 2.595124 TCCACATCACGCGTATGAAT 57.405 45.000 25.20 11.24 30.82 2.57
3147 3637 2.371910 TTCCACATCACGCGTATGAA 57.628 45.000 25.20 14.43 30.82 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.