Multiple sequence alignment - TraesCS1A01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G362600 chr1A 100.000 3709 0 0 813 4521 543393515 543397223 0.000000e+00 6850.0
1 TraesCS1A01G362600 chr1A 87.860 972 92 18 3561 4521 449269867 449268911 0.000000e+00 1118.0
2 TraesCS1A01G362600 chr1A 97.722 439 10 0 3561 3999 543403416 543403854 0.000000e+00 756.0
3 TraesCS1A01G362600 chr1A 100.000 352 0 0 1 352 543392703 543393054 0.000000e+00 651.0
4 TraesCS1A01G362600 chr1A 96.800 125 4 0 1294 1418 405783264 405783388 4.580000e-50 209.0
5 TraesCS1A01G362600 chr1A 100.000 48 0 0 3237 3284 543395892 543395939 6.230000e-14 89.8
6 TraesCS1A01G362600 chr1A 100.000 48 0 0 3190 3237 543395939 543395986 6.230000e-14 89.8
7 TraesCS1A01G362600 chr7A 96.431 1233 35 4 1358 2590 222574964 222576187 0.000000e+00 2025.0
8 TraesCS1A01G362600 chr7A 92.635 964 65 6 3561 4521 722148483 722147523 0.000000e+00 1382.0
9 TraesCS1A01G362600 chr7A 96.552 522 18 0 4000 4521 119601160 119601681 0.000000e+00 865.0
10 TraesCS1A01G362600 chr7A 96.169 522 20 0 4000 4521 13167060 13166539 0.000000e+00 854.0
11 TraesCS1A01G362600 chr7A 96.169 522 20 0 4000 4521 229128420 229128941 0.000000e+00 854.0
12 TraesCS1A01G362600 chr7A 97.085 446 12 1 3555 3999 266812757 266813202 0.000000e+00 750.0
13 TraesCS1A01G362600 chr7A 94.057 488 27 2 813 1298 565440284 565439797 0.000000e+00 739.0
14 TraesCS1A01G362600 chr7A 96.199 342 12 1 2899 3240 565438864 565438524 3.950000e-155 558.0
15 TraesCS1A01G362600 chr7A 95.695 302 13 0 2588 2889 565439851 565439550 1.890000e-133 486.0
16 TraesCS1A01G362600 chr7A 91.000 300 22 2 2588 2887 533581554 533581848 2.530000e-107 399.0
17 TraesCS1A01G362600 chr7A 95.500 200 4 3 3362 3560 565437126 565436931 9.440000e-82 315.0
18 TraesCS1A01G362600 chr7A 98.347 121 2 0 3237 3357 565438574 565438454 3.540000e-51 213.0
19 TraesCS1A01G362600 chr7A 93.571 140 9 0 1154 1293 533581462 533581601 4.580000e-50 209.0
20 TraesCS1A01G362600 chr7A 86.243 189 19 5 170 352 299321255 299321442 9.920000e-47 198.0
21 TraesCS1A01G362600 chr7A 85.405 185 23 4 170 352 565440513 565440331 5.970000e-44 189.0
22 TraesCS1A01G362600 chr3B 95.867 1234 42 4 1358 2590 814642407 814643632 0.000000e+00 1988.0
23 TraesCS1A01G362600 chr4A 95.297 808 30 1 1791 2590 736227070 736227877 0.000000e+00 1275.0
24 TraesCS1A01G362600 chr4A 96.169 522 20 0 4000 4521 216901348 216900827 0.000000e+00 854.0
25 TraesCS1A01G362600 chr4A 97.732 441 10 0 3559 3999 117084439 117083999 0.000000e+00 760.0
26 TraesCS1A01G362600 chr1B 88.613 966 98 10 3561 4521 685147081 685146123 0.000000e+00 1164.0
27 TraesCS1A01G362600 chr1B 86.486 74 8 2 216 288 3863827 3863755 3.750000e-11 80.5
28 TraesCS1A01G362600 chr5A 84.615 975 126 21 3563 4521 689344161 689345127 0.000000e+00 948.0
29 TraesCS1A01G362600 chr5A 96.169 522 20 0 4000 4521 496593520 496594041 0.000000e+00 854.0
30 TraesCS1A01G362600 chr5A 96.667 450 15 0 3550 3999 135138602 135139051 0.000000e+00 749.0
31 TraesCS1A01G362600 chr5A 97.600 125 2 1 1294 1418 573836986 573837109 3.540000e-51 213.0
32 TraesCS1A01G362600 chr5A 89.313 131 13 1 166 296 659255815 659255944 3.620000e-36 163.0
33 TraesCS1A01G362600 chr5A 89.873 79 8 0 170 248 659255943 659256021 8.000000e-18 102.0
34 TraesCS1A01G362600 chr5A 92.647 68 5 0 997 1064 547793606 547793539 1.040000e-16 99.0
35 TraesCS1A01G362600 chr6A 95.010 481 24 0 813 1293 68976886 68977366 0.000000e+00 756.0
36 TraesCS1A01G362600 chr6A 95.280 339 15 1 2899 3237 68978298 68978635 1.850000e-148 536.0
37 TraesCS1A01G362600 chr6A 93.377 302 12 2 2588 2889 68977319 68977612 1.490000e-119 440.0
38 TraesCS1A01G362600 chr6A 95.500 200 4 3 3362 3560 68982477 68982672 9.440000e-82 315.0
39 TraesCS1A01G362600 chr6A 97.458 118 2 1 3237 3354 68978588 68978704 2.760000e-47 200.0
40 TraesCS1A01G362600 chr6A 91.089 101 9 0 252 352 68976739 68976839 2.190000e-28 137.0
41 TraesCS1A01G362600 chr6A 94.805 77 4 0 1342 1418 209835876 209835952 2.210000e-23 121.0
42 TraesCS1A01G362600 chr2A 97.727 440 9 1 3561 3999 180008964 180009403 0.000000e+00 756.0
43 TraesCS1A01G362600 chr2A 95.200 125 6 0 1294 1418 116006764 116006888 9.920000e-47 198.0
44 TraesCS1A01G362600 chr3A 96.468 453 14 2 3547 3999 693005769 693005319 0.000000e+00 747.0
45 TraesCS1A01G362600 chr7B 92.667 300 18 1 2588 2887 490681431 490681136 3.230000e-116 429.0
46 TraesCS1A01G362600 chr7B 91.463 164 14 0 2899 3062 490679887 490679724 4.550000e-55 226.0
47 TraesCS1A01G362600 chr7D 92.333 300 19 1 2588 2887 467162247 467161952 1.500000e-114 424.0
48 TraesCS1A01G362600 chr7D 90.244 164 14 1 2899 3062 467161308 467161147 3.540000e-51 213.0
49 TraesCS1A01G362600 chr7D 94.203 138 6 2 1163 1298 467162330 467162193 4.580000e-50 209.0
50 TraesCS1A01G362600 chr7D 95.312 128 4 2 170 296 19034284 19034158 7.670000e-48 202.0
51 TraesCS1A01G362600 chr7D 89.706 136 12 2 162 296 549644946 549645080 6.010000e-39 172.0
52 TraesCS1A01G362600 chr7D 94.444 36 2 0 1028 1063 59674087 59674052 6.320000e-04 56.5
53 TraesCS1A01G362600 chr6B 88.530 279 27 4 1484 1761 671931032 671931306 2.610000e-87 333.0
54 TraesCS1A01G362600 chr6B 87.037 270 28 5 1494 1761 641469317 641469581 9.510000e-77 298.0
55 TraesCS1A01G362600 chr6B 87.766 188 16 6 169 352 690475810 690475994 3.540000e-51 213.0
56 TraesCS1A01G362600 chr6B 92.188 128 7 3 170 296 681426925 681427050 1.290000e-40 178.0
57 TraesCS1A01G362600 chr6B 96.970 33 1 0 3415 3447 163549110 163549078 6.320000e-04 56.5
58 TraesCS1A01G362600 chr4D 88.530 279 27 3 1484 1761 507394883 507395157 2.610000e-87 333.0
59 TraesCS1A01G362600 chr4D 88.172 279 28 3 1484 1761 320586234 320586508 1.210000e-85 327.0
60 TraesCS1A01G362600 chr4D 98.374 123 2 0 1294 1416 64562805 64562927 2.740000e-52 217.0
61 TraesCS1A01G362600 chr4D 90.400 125 9 1 1294 1418 222201573 222201452 1.300000e-35 161.0
62 TraesCS1A01G362600 chr5D 87.943 282 29 3 1484 1764 458284451 458284174 1.210000e-85 327.0
63 TraesCS1A01G362600 chr5D 96.970 33 1 0 3415 3447 351474114 351474082 6.320000e-04 56.5
64 TraesCS1A01G362600 chr5D 100.000 29 0 0 1036 1064 220777907 220777879 2.000000e-03 54.7
65 TraesCS1A01G362600 chrUn 95.500 200 4 3 3362 3560 477587997 477587802 9.440000e-82 315.0
66 TraesCS1A01G362600 chrUn 94.898 196 8 2 3366 3560 297389972 297389778 5.680000e-79 305.0
67 TraesCS1A01G362600 chrUn 94.898 196 8 2 3366 3560 333895278 333895472 5.680000e-79 305.0
68 TraesCS1A01G362600 chrUn 93.548 124 5 2 3237 3357 297391409 297391286 9.990000e-42 182.0
69 TraesCS1A01G362600 chrUn 94.915 118 3 2 3237 3351 355898263 355898380 9.990000e-42 182.0
70 TraesCS1A01G362600 chrUn 97.727 88 2 0 3153 3240 297391446 297391359 7.830000e-33 152.0
71 TraesCS1A01G362600 chrUn 98.824 85 1 0 3153 3237 355898226 355898310 7.830000e-33 152.0
72 TraesCS1A01G362600 chr1D 94.118 170 10 0 1 170 447468118 447468287 4.490000e-65 259.0
73 TraesCS1A01G362600 chr2B 95.349 129 4 2 169 296 255855346 255855473 2.130000e-48 204.0
74 TraesCS1A01G362600 chr2B 96.000 125 5 0 1294 1418 476578690 476578814 2.130000e-48 204.0
75 TraesCS1A01G362600 chr2B 96.970 33 1 0 3415 3447 12200891 12200859 6.320000e-04 56.5
76 TraesCS1A01G362600 chr2B 96.970 33 1 0 3415 3447 12228950 12228918 6.320000e-04 56.5
77 TraesCS1A01G362600 chr4B 92.969 128 7 2 170 296 665158562 665158436 7.720000e-43 185.0
78 TraesCS1A01G362600 chr3D 91.603 131 11 0 1288 1418 424215808 424215938 9.990000e-42 182.0
79 TraesCS1A01G362600 chr3D 89.796 98 9 1 3464 3560 500223900 500223803 1.710000e-24 124.0
80 TraesCS1A01G362600 chr3D 87.097 93 9 3 3469 3560 568490992 568490902 8.000000e-18 102.0
81 TraesCS1A01G362600 chr5B 95.062 81 4 0 1338 1418 491055513 491055593 1.320000e-25 128.0
82 TraesCS1A01G362600 chr2D 87.097 93 9 3 3469 3560 598267200 598267110 8.000000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G362600 chr1A 543392703 543397223 4520 False 1920.150000 6850 100.0000 1 4521 4 chr1A.!!$F3 4520
1 TraesCS1A01G362600 chr1A 449268911 449269867 956 True 1118.000000 1118 87.8600 3561 4521 1 chr1A.!!$R1 960
2 TraesCS1A01G362600 chr7A 222574964 222576187 1223 False 2025.000000 2025 96.4310 1358 2590 1 chr7A.!!$F2 1232
3 TraesCS1A01G362600 chr7A 722147523 722148483 960 True 1382.000000 1382 92.6350 3561 4521 1 chr7A.!!$R2 960
4 TraesCS1A01G362600 chr7A 119601160 119601681 521 False 865.000000 865 96.5520 4000 4521 1 chr7A.!!$F1 521
5 TraesCS1A01G362600 chr7A 13166539 13167060 521 True 854.000000 854 96.1690 4000 4521 1 chr7A.!!$R1 521
6 TraesCS1A01G362600 chr7A 229128420 229128941 521 False 854.000000 854 96.1690 4000 4521 1 chr7A.!!$F3 521
7 TraesCS1A01G362600 chr7A 565436931 565440513 3582 True 416.666667 739 94.2005 170 3560 6 chr7A.!!$R3 3390
8 TraesCS1A01G362600 chr3B 814642407 814643632 1225 False 1988.000000 1988 95.8670 1358 2590 1 chr3B.!!$F1 1232
9 TraesCS1A01G362600 chr4A 736227070 736227877 807 False 1275.000000 1275 95.2970 1791 2590 1 chr4A.!!$F1 799
10 TraesCS1A01G362600 chr4A 216900827 216901348 521 True 854.000000 854 96.1690 4000 4521 1 chr4A.!!$R2 521
11 TraesCS1A01G362600 chr1B 685146123 685147081 958 True 1164.000000 1164 88.6130 3561 4521 1 chr1B.!!$R2 960
12 TraesCS1A01G362600 chr5A 689344161 689345127 966 False 948.000000 948 84.6150 3563 4521 1 chr5A.!!$F4 958
13 TraesCS1A01G362600 chr5A 496593520 496594041 521 False 854.000000 854 96.1690 4000 4521 1 chr5A.!!$F2 521
14 TraesCS1A01G362600 chr6A 68976739 68982672 5933 False 397.333333 756 94.6190 252 3560 6 chr6A.!!$F2 3308
15 TraesCS1A01G362600 chr7B 490679724 490681431 1707 True 327.500000 429 92.0650 2588 3062 2 chr7B.!!$R1 474
16 TraesCS1A01G362600 chr7D 467161147 467162330 1183 True 282.000000 424 92.2600 1163 3062 3 chr7D.!!$R3 1899
17 TraesCS1A01G362600 chrUn 297389778 297391446 1668 True 213.000000 305 95.3910 3153 3560 3 chrUn.!!$R2 407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.110486 AGAACCGTTGCCTCCATGTT 59.890 50.0 0.0 0.0 0.00 2.71 F
1335 1336 0.112995 TTCCTGCCCTGATTGCTTGT 59.887 50.0 0.0 0.0 0.00 3.16 F
2182 2185 0.034767 TTGCTGGCTCTGGATTCAGG 60.035 55.0 0.0 0.0 41.23 3.86 F
2916 4168 0.037160 TTGCAGGCAGAGCAGAATGA 59.963 50.0 0.0 0.0 43.75 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1347 0.036388 TCCTCATCCAAACACGGAGC 60.036 55.000 0.0 0.0 38.83 4.70 R
2897 2908 0.037160 TCATTCTGCTCTGCCTGCAA 59.963 50.000 0.0 0.0 40.13 4.08 R
3359 4614 1.064906 CAATCCTGGTGAGGCAGTGAT 60.065 52.381 0.0 0.0 39.57 3.06 R
4417 9524 0.869730 GAAACCTTAAGCGTGCGGAA 59.130 50.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.579410 ACCGCTTCCCATTGTAACTT 57.421 45.000 0.00 0.00 0.00 2.66
20 21 2.159382 ACCGCTTCCCATTGTAACTTG 58.841 47.619 0.00 0.00 0.00 3.16
21 22 2.159382 CCGCTTCCCATTGTAACTTGT 58.841 47.619 0.00 0.00 0.00 3.16
22 23 2.556622 CCGCTTCCCATTGTAACTTGTT 59.443 45.455 0.00 0.00 0.00 2.83
23 24 3.005367 CCGCTTCCCATTGTAACTTGTTT 59.995 43.478 0.00 0.00 0.00 2.83
24 25 3.980775 CGCTTCCCATTGTAACTTGTTTG 59.019 43.478 0.00 0.00 0.00 2.93
25 26 4.499019 CGCTTCCCATTGTAACTTGTTTGT 60.499 41.667 0.00 0.00 0.00 2.83
26 27 5.356426 GCTTCCCATTGTAACTTGTTTGTT 58.644 37.500 0.00 0.00 0.00 2.83
27 28 5.462068 GCTTCCCATTGTAACTTGTTTGTTC 59.538 40.000 0.00 0.00 0.00 3.18
28 29 6.531503 TTCCCATTGTAACTTGTTTGTTCA 57.468 33.333 0.00 0.00 0.00 3.18
29 30 6.723298 TCCCATTGTAACTTGTTTGTTCAT 57.277 33.333 0.00 0.00 0.00 2.57
30 31 6.511416 TCCCATTGTAACTTGTTTGTTCATG 58.489 36.000 0.00 0.00 0.00 3.07
31 32 5.177327 CCCATTGTAACTTGTTTGTTCATGC 59.823 40.000 0.00 0.00 0.00 4.06
32 33 5.984926 CCATTGTAACTTGTTTGTTCATGCT 59.015 36.000 0.00 0.00 0.00 3.79
33 34 6.074195 CCATTGTAACTTGTTTGTTCATGCTG 60.074 38.462 0.00 0.00 0.00 4.41
34 35 5.826601 TGTAACTTGTTTGTTCATGCTGA 57.173 34.783 0.00 0.00 0.00 4.26
35 36 6.389830 TGTAACTTGTTTGTTCATGCTGAT 57.610 33.333 0.00 0.00 0.00 2.90
36 37 7.503521 TGTAACTTGTTTGTTCATGCTGATA 57.496 32.000 0.00 0.00 0.00 2.15
37 38 7.359595 TGTAACTTGTTTGTTCATGCTGATAC 58.640 34.615 0.00 0.00 0.00 2.24
38 39 6.389830 AACTTGTTTGTTCATGCTGATACA 57.610 33.333 0.00 0.00 0.00 2.29
39 40 6.579666 ACTTGTTTGTTCATGCTGATACAT 57.420 33.333 0.00 0.00 0.00 2.29
40 41 6.615088 ACTTGTTTGTTCATGCTGATACATC 58.385 36.000 0.00 0.00 0.00 3.06
41 42 5.565592 TGTTTGTTCATGCTGATACATCC 57.434 39.130 0.00 0.00 0.00 3.51
42 43 4.094739 TGTTTGTTCATGCTGATACATCCG 59.905 41.667 0.00 0.00 0.00 4.18
43 44 3.817709 TGTTCATGCTGATACATCCGA 57.182 42.857 0.00 0.00 0.00 4.55
44 45 3.721035 TGTTCATGCTGATACATCCGAG 58.279 45.455 0.00 0.00 0.00 4.63
45 46 3.384467 TGTTCATGCTGATACATCCGAGA 59.616 43.478 0.00 0.00 0.00 4.04
46 47 3.650070 TCATGCTGATACATCCGAGAC 57.350 47.619 0.00 0.00 0.00 3.36
47 48 2.958355 TCATGCTGATACATCCGAGACA 59.042 45.455 0.00 0.00 0.00 3.41
48 49 3.575687 TCATGCTGATACATCCGAGACAT 59.424 43.478 0.00 0.00 0.00 3.06
49 50 3.375782 TGCTGATACATCCGAGACATG 57.624 47.619 0.00 0.00 0.00 3.21
50 51 2.695147 TGCTGATACATCCGAGACATGT 59.305 45.455 0.00 0.00 38.13 3.21
51 52 3.055591 GCTGATACATCCGAGACATGTG 58.944 50.000 1.15 0.00 35.95 3.21
52 53 3.055591 CTGATACATCCGAGACATGTGC 58.944 50.000 1.15 0.00 35.95 4.57
53 54 2.224042 TGATACATCCGAGACATGTGCC 60.224 50.000 1.15 0.00 35.95 5.01
54 55 1.190643 TACATCCGAGACATGTGCCA 58.809 50.000 1.15 0.00 35.95 4.92
55 56 0.543277 ACATCCGAGACATGTGCCAT 59.457 50.000 1.15 0.00 33.04 4.40
56 57 0.942252 CATCCGAGACATGTGCCATG 59.058 55.000 1.15 12.06 0.00 3.66
57 58 0.832626 ATCCGAGACATGTGCCATGA 59.167 50.000 18.41 0.00 0.00 3.07
58 59 0.612744 TCCGAGACATGTGCCATGAA 59.387 50.000 18.41 0.00 0.00 2.57
59 60 1.210234 TCCGAGACATGTGCCATGAAT 59.790 47.619 18.41 8.62 0.00 2.57
60 61 2.019249 CCGAGACATGTGCCATGAATT 58.981 47.619 18.41 6.43 0.00 2.17
61 62 2.424601 CCGAGACATGTGCCATGAATTT 59.575 45.455 18.41 0.35 0.00 1.82
62 63 3.119388 CCGAGACATGTGCCATGAATTTT 60.119 43.478 18.41 0.04 0.00 1.82
63 64 4.096231 CCGAGACATGTGCCATGAATTTTA 59.904 41.667 18.41 0.00 0.00 1.52
64 65 5.392919 CCGAGACATGTGCCATGAATTTTAA 60.393 40.000 18.41 0.00 0.00 1.52
65 66 6.092092 CGAGACATGTGCCATGAATTTTAAA 58.908 36.000 18.41 0.00 0.00 1.52
66 67 6.252015 CGAGACATGTGCCATGAATTTTAAAG 59.748 38.462 18.41 1.43 0.00 1.85
67 68 5.870978 AGACATGTGCCATGAATTTTAAAGC 59.129 36.000 18.41 0.00 0.00 3.51
68 69 5.549347 ACATGTGCCATGAATTTTAAAGCA 58.451 33.333 18.41 0.00 0.00 3.91
72 73 6.484818 GTGCCATGAATTTTAAAGCACATT 57.515 33.333 16.94 2.85 46.32 2.71
73 74 6.901265 GTGCCATGAATTTTAAAGCACATTT 58.099 32.000 16.94 0.00 46.32 2.32
74 75 6.797995 GTGCCATGAATTTTAAAGCACATTTG 59.202 34.615 16.94 6.89 46.32 2.32
75 76 6.485984 TGCCATGAATTTTAAAGCACATTTGT 59.514 30.769 0.00 0.00 32.01 2.83
86 87 2.320805 CACATTTGTGTTCTCTGCCG 57.679 50.000 2.48 0.00 40.96 5.69
87 88 0.593128 ACATTTGTGTTCTCTGCCGC 59.407 50.000 0.00 0.00 0.00 6.53
88 89 0.877071 CATTTGTGTTCTCTGCCGCT 59.123 50.000 0.00 0.00 0.00 5.52
89 90 1.267806 CATTTGTGTTCTCTGCCGCTT 59.732 47.619 0.00 0.00 0.00 4.68
90 91 2.248280 TTTGTGTTCTCTGCCGCTTA 57.752 45.000 0.00 0.00 0.00 3.09
91 92 2.248280 TTGTGTTCTCTGCCGCTTAA 57.752 45.000 0.00 0.00 0.00 1.85
92 93 2.248280 TGTGTTCTCTGCCGCTTAAA 57.752 45.000 0.00 0.00 0.00 1.52
93 94 2.778299 TGTGTTCTCTGCCGCTTAAAT 58.222 42.857 0.00 0.00 0.00 1.40
94 95 2.483877 TGTGTTCTCTGCCGCTTAAATG 59.516 45.455 0.00 0.00 0.00 2.32
95 96 2.742053 GTGTTCTCTGCCGCTTAAATGA 59.258 45.455 0.00 0.00 0.00 2.57
96 97 3.375299 GTGTTCTCTGCCGCTTAAATGAT 59.625 43.478 0.00 0.00 0.00 2.45
97 98 4.570772 GTGTTCTCTGCCGCTTAAATGATA 59.429 41.667 0.00 0.00 0.00 2.15
98 99 4.811024 TGTTCTCTGCCGCTTAAATGATAG 59.189 41.667 0.00 0.00 0.00 2.08
99 100 4.937201 TCTCTGCCGCTTAAATGATAGA 57.063 40.909 0.00 0.00 0.00 1.98
100 101 5.276461 TCTCTGCCGCTTAAATGATAGAA 57.724 39.130 0.00 0.00 0.00 2.10
101 102 5.670485 TCTCTGCCGCTTAAATGATAGAAA 58.330 37.500 0.00 0.00 0.00 2.52
102 103 6.112734 TCTCTGCCGCTTAAATGATAGAAAA 58.887 36.000 0.00 0.00 0.00 2.29
103 104 6.597672 TCTCTGCCGCTTAAATGATAGAAAAA 59.402 34.615 0.00 0.00 0.00 1.94
104 105 7.283127 TCTCTGCCGCTTAAATGATAGAAAAAT 59.717 33.333 0.00 0.00 0.00 1.82
105 106 7.195646 TCTGCCGCTTAAATGATAGAAAAATG 58.804 34.615 0.00 0.00 0.00 2.32
106 107 6.862209 TGCCGCTTAAATGATAGAAAAATGT 58.138 32.000 0.00 0.00 0.00 2.71
107 108 7.990917 TGCCGCTTAAATGATAGAAAAATGTA 58.009 30.769 0.00 0.00 0.00 2.29
108 109 8.462811 TGCCGCTTAAATGATAGAAAAATGTAA 58.537 29.630 0.00 0.00 0.00 2.41
109 110 8.958043 GCCGCTTAAATGATAGAAAAATGTAAG 58.042 33.333 0.00 0.00 0.00 2.34
130 131 8.098286 TGTAAGTGTATATGGTGGTATATTGGC 58.902 37.037 0.00 0.00 0.00 4.52
131 132 5.730550 AGTGTATATGGTGGTATATTGGCG 58.269 41.667 0.00 0.00 0.00 5.69
132 133 5.482526 AGTGTATATGGTGGTATATTGGCGA 59.517 40.000 0.00 0.00 0.00 5.54
133 134 6.156256 AGTGTATATGGTGGTATATTGGCGAT 59.844 38.462 0.00 0.00 0.00 4.58
134 135 7.343574 AGTGTATATGGTGGTATATTGGCGATA 59.656 37.037 0.00 0.00 0.00 2.92
135 136 8.148351 GTGTATATGGTGGTATATTGGCGATAT 58.852 37.037 11.86 11.86 35.19 1.63
136 137 8.364894 TGTATATGGTGGTATATTGGCGATATC 58.635 37.037 10.55 3.66 33.09 1.63
137 138 5.692115 ATGGTGGTATATTGGCGATATCA 57.308 39.130 10.55 3.40 33.09 2.15
138 139 5.692115 TGGTGGTATATTGGCGATATCAT 57.308 39.130 10.55 0.00 33.09 2.45
139 140 5.427378 TGGTGGTATATTGGCGATATCATG 58.573 41.667 10.55 0.00 33.09 3.07
140 141 5.188751 TGGTGGTATATTGGCGATATCATGA 59.811 40.000 10.55 0.00 33.09 3.07
141 142 5.755375 GGTGGTATATTGGCGATATCATGAG 59.245 44.000 10.55 0.00 33.09 2.90
142 143 6.341316 GTGGTATATTGGCGATATCATGAGT 58.659 40.000 10.55 0.00 33.09 3.41
143 144 6.256539 GTGGTATATTGGCGATATCATGAGTG 59.743 42.308 10.55 0.00 33.09 3.51
144 145 6.070824 TGGTATATTGGCGATATCATGAGTGT 60.071 38.462 10.55 0.00 33.09 3.55
145 146 6.818644 GGTATATTGGCGATATCATGAGTGTT 59.181 38.462 10.55 0.00 33.09 3.32
146 147 7.334421 GGTATATTGGCGATATCATGAGTGTTT 59.666 37.037 10.55 0.00 33.09 2.83
147 148 7.750229 ATATTGGCGATATCATGAGTGTTTT 57.250 32.000 0.09 0.00 0.00 2.43
148 149 5.484173 TTGGCGATATCATGAGTGTTTTC 57.516 39.130 0.09 0.00 0.00 2.29
149 150 3.555547 TGGCGATATCATGAGTGTTTTCG 59.444 43.478 0.09 2.19 34.07 3.46
150 151 3.555956 GGCGATATCATGAGTGTTTTCGT 59.444 43.478 0.09 0.00 33.72 3.85
151 152 4.034048 GGCGATATCATGAGTGTTTTCGTT 59.966 41.667 0.09 0.00 33.72 3.85
152 153 4.957967 GCGATATCATGAGTGTTTTCGTTG 59.042 41.667 0.09 0.00 33.72 4.10
153 154 4.957967 CGATATCATGAGTGTTTTCGTTGC 59.042 41.667 0.09 0.00 0.00 4.17
154 155 5.220472 CGATATCATGAGTGTTTTCGTTGCT 60.220 40.000 0.09 0.00 0.00 3.91
155 156 4.836125 ATCATGAGTGTTTTCGTTGCTT 57.164 36.364 0.09 0.00 0.00 3.91
156 157 4.630894 TCATGAGTGTTTTCGTTGCTTT 57.369 36.364 0.00 0.00 0.00 3.51
157 158 4.597079 TCATGAGTGTTTTCGTTGCTTTC 58.403 39.130 0.00 0.00 0.00 2.62
158 159 4.095632 TCATGAGTGTTTTCGTTGCTTTCA 59.904 37.500 0.00 0.00 0.00 2.69
159 160 4.630894 TGAGTGTTTTCGTTGCTTTCAT 57.369 36.364 0.00 0.00 0.00 2.57
160 161 4.350346 TGAGTGTTTTCGTTGCTTTCATG 58.650 39.130 0.00 0.00 0.00 3.07
161 162 3.115554 AGTGTTTTCGTTGCTTTCATGC 58.884 40.909 0.00 0.00 0.00 4.06
162 163 2.857152 GTGTTTTCGTTGCTTTCATGCA 59.143 40.909 0.00 0.00 41.65 3.96
163 164 3.490526 GTGTTTTCGTTGCTTTCATGCAT 59.509 39.130 0.00 0.00 42.96 3.96
164 165 4.679197 GTGTTTTCGTTGCTTTCATGCATA 59.321 37.500 0.00 0.00 42.96 3.14
165 166 4.679197 TGTTTTCGTTGCTTTCATGCATAC 59.321 37.500 0.00 0.00 42.96 2.39
166 167 4.495911 TTTCGTTGCTTTCATGCATACA 57.504 36.364 0.00 0.00 42.96 2.29
167 168 3.745332 TCGTTGCTTTCATGCATACAG 57.255 42.857 0.00 0.00 42.96 2.74
168 169 3.073678 TCGTTGCTTTCATGCATACAGT 58.926 40.909 0.00 0.00 42.96 3.55
185 186 9.845740 TGCATACAGTATTGAACATATAAACCT 57.154 29.630 0.00 0.00 0.00 3.50
196 197 8.561738 TGAACATATAAACCTTCAAGAACTCC 57.438 34.615 0.00 0.00 0.00 3.85
203 204 2.569404 ACCTTCAAGAACTCCTAGGCAG 59.431 50.000 2.96 5.30 0.00 4.85
205 206 3.261897 CCTTCAAGAACTCCTAGGCAGAA 59.738 47.826 2.96 0.00 0.00 3.02
207 208 2.567615 TCAAGAACTCCTAGGCAGAACC 59.432 50.000 2.96 0.00 39.61 3.62
208 209 1.187087 AGAACTCCTAGGCAGAACCG 58.813 55.000 2.96 0.00 46.52 4.44
209 210 0.896226 GAACTCCTAGGCAGAACCGT 59.104 55.000 2.96 0.00 46.52 4.83
210 211 1.275573 GAACTCCTAGGCAGAACCGTT 59.724 52.381 2.96 0.00 46.52 4.44
211 212 0.608640 ACTCCTAGGCAGAACCGTTG 59.391 55.000 2.96 0.00 46.52 4.10
218 219 1.675641 GCAGAACCGTTGCCTCCAT 60.676 57.895 0.00 0.00 35.54 3.41
221 222 0.110486 AGAACCGTTGCCTCCATGTT 59.890 50.000 0.00 0.00 0.00 2.71
222 223 0.240945 GAACCGTTGCCTCCATGTTG 59.759 55.000 0.00 0.00 0.00 3.33
224 225 1.973281 CCGTTGCCTCCATGTTGCT 60.973 57.895 0.00 0.00 0.00 3.91
225 226 1.503542 CGTTGCCTCCATGTTGCTC 59.496 57.895 0.00 0.00 0.00 4.26
227 228 1.675714 CGTTGCCTCCATGTTGCTCTA 60.676 52.381 0.00 0.00 0.00 2.43
228 229 2.648059 GTTGCCTCCATGTTGCTCTAT 58.352 47.619 0.00 0.00 0.00 1.98
231 232 4.502105 TGCCTCCATGTTGCTCTATAAA 57.498 40.909 0.00 0.00 0.00 1.40
232 233 4.199310 TGCCTCCATGTTGCTCTATAAAC 58.801 43.478 0.00 0.00 0.00 2.01
237 238 3.623060 CCATGTTGCTCTATAAACGCTGT 59.377 43.478 0.00 0.00 0.00 4.40
260 261 1.135803 CCACCGCCTGTAATTTTCGTG 60.136 52.381 0.00 0.00 0.00 4.35
265 266 0.450184 CCTGTAATTTTCGTGCCCCG 59.550 55.000 0.00 0.00 38.13 5.73
268 269 1.303398 TAATTTTCGTGCCCCGCCA 60.303 52.632 0.00 0.00 36.19 5.69
295 296 6.482308 GGGCATCTTAGTAATTTCACGTACAT 59.518 38.462 0.00 0.00 0.00 2.29
296 297 7.345192 GGCATCTTAGTAATTTCACGTACATG 58.655 38.462 0.00 0.00 0.00 3.21
339 340 2.464459 CGCTGCGATGGAGAAACCC 61.464 63.158 18.66 0.00 38.00 4.11
340 341 1.078143 GCTGCGATGGAGAAACCCT 60.078 57.895 0.00 0.00 38.00 4.34
927 928 2.769621 TCCCCTGATGCCGCATCT 60.770 61.111 28.94 0.03 41.06 2.90
955 956 1.690985 CCCCCAGTCCTCCTTCTCC 60.691 68.421 0.00 0.00 0.00 3.71
1026 1027 1.133637 TCGATCTGGAGAAGGAGAGGG 60.134 57.143 0.00 0.00 0.00 4.30
1066 1067 1.992277 GAGAAGGGGAGCAGCCTCA 60.992 63.158 0.00 0.00 40.87 3.86
1069 1070 2.811542 GAAGGGGAGCAGCCTCACAC 62.812 65.000 0.00 0.00 43.57 3.82
1086 1087 1.980765 ACACATCTTCAGCCCTCTCAA 59.019 47.619 0.00 0.00 0.00 3.02
1092 1093 0.254178 TTCAGCCCTCTCAATCAGGC 59.746 55.000 0.00 0.00 46.13 4.85
1112 1113 1.539388 CACGTGCCTCCTTTGCATTTA 59.461 47.619 0.82 0.00 41.46 1.40
1140 1141 7.096551 TGTTCTTAATTAGCCCATTTTTGCTC 58.903 34.615 0.00 0.00 39.00 4.26
1152 1153 5.166398 CCATTTTTGCTCTGATTCTTGGAC 58.834 41.667 0.00 0.00 0.00 4.02
1156 1157 0.723981 GCTCTGATTCTTGGACGTGC 59.276 55.000 0.00 0.00 0.00 5.34
1176 1177 2.549754 GCCGTCCAATATGAACATGAGG 59.450 50.000 0.00 0.00 0.00 3.86
1235 1236 6.015772 TGGCCCTTGAAACAACTAACTATTTC 60.016 38.462 0.00 0.00 0.00 2.17
1236 1237 6.015772 GGCCCTTGAAACAACTAACTATTTCA 60.016 38.462 0.00 0.00 38.85 2.69
1237 1238 7.084486 GCCCTTGAAACAACTAACTATTTCAG 58.916 38.462 0.00 0.00 40.93 3.02
1238 1239 7.593825 CCCTTGAAACAACTAACTATTTCAGG 58.406 38.462 0.00 0.00 40.93 3.86
1239 1240 7.447238 CCCTTGAAACAACTAACTATTTCAGGA 59.553 37.037 8.68 0.00 40.93 3.86
1240 1241 8.507249 CCTTGAAACAACTAACTATTTCAGGAG 58.493 37.037 8.68 1.36 40.93 3.69
1241 1242 7.979444 TGAAACAACTAACTATTTCAGGAGG 57.021 36.000 0.00 0.00 36.42 4.30
1242 1243 7.741785 TGAAACAACTAACTATTTCAGGAGGA 58.258 34.615 0.00 0.00 36.42 3.71
1243 1244 7.660208 TGAAACAACTAACTATTTCAGGAGGAC 59.340 37.037 0.00 0.00 36.42 3.85
1244 1245 6.681729 ACAACTAACTATTTCAGGAGGACA 57.318 37.500 0.00 0.00 0.00 4.02
1245 1246 7.259088 ACAACTAACTATTTCAGGAGGACAT 57.741 36.000 0.00 0.00 0.00 3.06
1246 1247 7.690256 ACAACTAACTATTTCAGGAGGACATT 58.310 34.615 0.00 0.00 0.00 2.71
1247 1248 7.824779 ACAACTAACTATTTCAGGAGGACATTC 59.175 37.037 0.00 0.00 0.00 2.67
1248 1249 7.496346 ACTAACTATTTCAGGAGGACATTCA 57.504 36.000 0.00 0.00 0.00 2.57
1249 1250 7.560368 ACTAACTATTTCAGGAGGACATTCAG 58.440 38.462 0.00 0.00 0.00 3.02
1250 1251 4.775236 ACTATTTCAGGAGGACATTCAGC 58.225 43.478 0.00 0.00 0.00 4.26
1251 1252 4.472833 ACTATTTCAGGAGGACATTCAGCT 59.527 41.667 0.00 0.00 0.00 4.24
1252 1253 3.340814 TTTCAGGAGGACATTCAGCTC 57.659 47.619 0.00 0.00 0.00 4.09
1253 1254 1.942776 TCAGGAGGACATTCAGCTCA 58.057 50.000 0.00 0.00 0.00 4.26
1254 1255 2.475155 TCAGGAGGACATTCAGCTCAT 58.525 47.619 0.00 0.00 0.00 2.90
1255 1256 2.169978 TCAGGAGGACATTCAGCTCATG 59.830 50.000 0.00 0.00 0.00 3.07
1256 1257 1.489649 AGGAGGACATTCAGCTCATGG 59.510 52.381 7.24 0.00 0.00 3.66
1257 1258 1.307097 GAGGACATTCAGCTCATGGC 58.693 55.000 7.24 3.88 42.19 4.40
1258 1259 0.622136 AGGACATTCAGCTCATGGCA 59.378 50.000 9.97 0.00 44.79 4.92
1259 1260 1.022735 GGACATTCAGCTCATGGCAG 58.977 55.000 9.97 1.41 44.79 4.85
1260 1261 1.407851 GGACATTCAGCTCATGGCAGA 60.408 52.381 9.97 3.60 44.79 4.26
1261 1262 2.573369 GACATTCAGCTCATGGCAGAT 58.427 47.619 3.66 0.00 44.79 2.90
1262 1263 3.495629 GGACATTCAGCTCATGGCAGATA 60.496 47.826 9.97 0.00 44.79 1.98
1263 1264 4.325119 GACATTCAGCTCATGGCAGATAT 58.675 43.478 3.66 1.73 44.79 1.63
1264 1265 5.485620 GACATTCAGCTCATGGCAGATATA 58.514 41.667 3.66 0.00 44.79 0.86
1265 1266 5.489249 ACATTCAGCTCATGGCAGATATAG 58.511 41.667 8.58 0.00 44.79 1.31
1266 1267 4.548451 TTCAGCTCATGGCAGATATAGG 57.452 45.455 8.58 0.00 44.79 2.57
1267 1268 3.782992 TCAGCTCATGGCAGATATAGGA 58.217 45.455 8.58 0.00 44.79 2.94
1268 1269 4.359996 TCAGCTCATGGCAGATATAGGAT 58.640 43.478 8.58 0.00 44.79 3.24
1269 1270 4.781621 TCAGCTCATGGCAGATATAGGATT 59.218 41.667 8.58 0.00 44.79 3.01
1270 1271 4.876679 CAGCTCATGGCAGATATAGGATTG 59.123 45.833 8.58 0.00 44.79 2.67
1271 1272 4.080469 AGCTCATGGCAGATATAGGATTGG 60.080 45.833 8.58 0.00 44.79 3.16
1272 1273 4.080695 GCTCATGGCAGATATAGGATTGGA 60.081 45.833 0.00 0.00 41.35 3.53
1273 1274 5.397672 GCTCATGGCAGATATAGGATTGGAT 60.398 44.000 0.00 0.00 41.35 3.41
1274 1275 5.997843 TCATGGCAGATATAGGATTGGATG 58.002 41.667 0.00 0.00 0.00 3.51
1275 1276 5.489997 TCATGGCAGATATAGGATTGGATGT 59.510 40.000 0.00 0.00 0.00 3.06
1276 1277 5.426689 TGGCAGATATAGGATTGGATGTC 57.573 43.478 0.00 0.00 0.00 3.06
1277 1278 5.096521 TGGCAGATATAGGATTGGATGTCT 58.903 41.667 0.00 0.00 0.00 3.41
1278 1279 6.263754 TGGCAGATATAGGATTGGATGTCTA 58.736 40.000 0.00 0.00 0.00 2.59
1279 1280 6.155221 TGGCAGATATAGGATTGGATGTCTAC 59.845 42.308 0.00 0.00 0.00 2.59
1280 1281 6.155221 GGCAGATATAGGATTGGATGTCTACA 59.845 42.308 0.00 0.00 0.00 2.74
1281 1282 7.264221 GCAGATATAGGATTGGATGTCTACAG 58.736 42.308 0.00 0.00 0.00 2.74
1282 1283 7.123397 GCAGATATAGGATTGGATGTCTACAGA 59.877 40.741 0.00 0.00 0.00 3.41
1283 1284 9.199645 CAGATATAGGATTGGATGTCTACAGAT 57.800 37.037 0.00 0.00 0.00 2.90
1284 1285 9.781425 AGATATAGGATTGGATGTCTACAGATT 57.219 33.333 0.00 0.00 0.00 2.40
1286 1287 9.781425 ATATAGGATTGGATGTCTACAGATTCT 57.219 33.333 0.00 0.00 0.00 2.40
1287 1288 6.418057 AGGATTGGATGTCTACAGATTCTC 57.582 41.667 0.00 0.00 0.00 2.87
1288 1289 5.901853 AGGATTGGATGTCTACAGATTCTCA 59.098 40.000 0.00 0.00 0.00 3.27
1289 1290 6.385176 AGGATTGGATGTCTACAGATTCTCAA 59.615 38.462 0.00 0.00 0.00 3.02
1290 1291 7.072202 AGGATTGGATGTCTACAGATTCTCAAT 59.928 37.037 0.00 0.00 0.00 2.57
1291 1292 7.718753 GGATTGGATGTCTACAGATTCTCAATT 59.281 37.037 0.00 0.00 0.00 2.32
1292 1293 7.854557 TTGGATGTCTACAGATTCTCAATTG 57.145 36.000 0.00 0.00 0.00 2.32
1293 1294 7.186570 TGGATGTCTACAGATTCTCAATTGA 57.813 36.000 8.12 8.12 0.00 2.57
1294 1295 7.270779 TGGATGTCTACAGATTCTCAATTGAG 58.729 38.462 26.56 26.56 43.36 3.02
1295 1296 6.705381 GGATGTCTACAGATTCTCAATTGAGG 59.295 42.308 30.33 18.42 42.30 3.86
1296 1297 6.611613 TGTCTACAGATTCTCAATTGAGGT 57.388 37.500 30.33 22.37 42.30 3.85
1297 1298 6.634805 TGTCTACAGATTCTCAATTGAGGTC 58.365 40.000 30.33 26.26 42.30 3.85
1298 1299 6.211384 TGTCTACAGATTCTCAATTGAGGTCA 59.789 38.462 30.33 17.59 42.30 4.02
1299 1300 6.756074 GTCTACAGATTCTCAATTGAGGTCAG 59.244 42.308 30.33 25.01 42.30 3.51
1300 1301 5.752036 ACAGATTCTCAATTGAGGTCAGA 57.248 39.130 30.33 12.23 42.30 3.27
1301 1302 6.310764 ACAGATTCTCAATTGAGGTCAGAT 57.689 37.500 30.33 17.91 42.30 2.90
1302 1303 6.347696 ACAGATTCTCAATTGAGGTCAGATC 58.652 40.000 30.33 23.10 42.30 2.75
1303 1304 5.759273 CAGATTCTCAATTGAGGTCAGATCC 59.241 44.000 30.33 13.73 42.30 3.36
1304 1305 4.494091 TTCTCAATTGAGGTCAGATCCC 57.506 45.455 30.33 0.00 42.30 3.85
1305 1306 2.432146 TCTCAATTGAGGTCAGATCCCG 59.568 50.000 30.33 6.15 42.30 5.14
1306 1307 2.169352 CTCAATTGAGGTCAGATCCCGT 59.831 50.000 25.14 0.00 38.48 5.28
1307 1308 2.571653 TCAATTGAGGTCAGATCCCGTT 59.428 45.455 3.38 0.00 0.00 4.44
1308 1309 3.009033 TCAATTGAGGTCAGATCCCGTTT 59.991 43.478 3.38 0.00 0.00 3.60
1309 1310 4.224147 TCAATTGAGGTCAGATCCCGTTTA 59.776 41.667 3.38 0.00 0.00 2.01
1310 1311 4.837093 ATTGAGGTCAGATCCCGTTTAA 57.163 40.909 0.00 0.00 0.00 1.52
1311 1312 3.604875 TGAGGTCAGATCCCGTTTAAC 57.395 47.619 0.00 0.00 0.00 2.01
1312 1313 2.235402 TGAGGTCAGATCCCGTTTAACC 59.765 50.000 0.00 0.00 0.00 2.85
1313 1314 1.558294 AGGTCAGATCCCGTTTAACCC 59.442 52.381 0.00 0.00 0.00 4.11
1314 1315 1.407851 GGTCAGATCCCGTTTAACCCC 60.408 57.143 0.00 0.00 0.00 4.95
1315 1316 0.913924 TCAGATCCCGTTTAACCCCC 59.086 55.000 0.00 0.00 0.00 5.40
1316 1317 0.916809 CAGATCCCGTTTAACCCCCT 59.083 55.000 0.00 0.00 0.00 4.79
1317 1318 1.283905 CAGATCCCGTTTAACCCCCTT 59.716 52.381 0.00 0.00 0.00 3.95
1318 1319 1.562942 AGATCCCGTTTAACCCCCTTC 59.437 52.381 0.00 0.00 0.00 3.46
1319 1320 0.627451 ATCCCGTTTAACCCCCTTCC 59.373 55.000 0.00 0.00 0.00 3.46
1320 1321 0.476219 TCCCGTTTAACCCCCTTCCT 60.476 55.000 0.00 0.00 0.00 3.36
1321 1322 0.323087 CCCGTTTAACCCCCTTCCTG 60.323 60.000 0.00 0.00 0.00 3.86
1322 1323 0.963856 CCGTTTAACCCCCTTCCTGC 60.964 60.000 0.00 0.00 0.00 4.85
1323 1324 0.963856 CGTTTAACCCCCTTCCTGCC 60.964 60.000 0.00 0.00 0.00 4.85
1324 1325 0.613853 GTTTAACCCCCTTCCTGCCC 60.614 60.000 0.00 0.00 0.00 5.36
1325 1326 0.778479 TTTAACCCCCTTCCTGCCCT 60.778 55.000 0.00 0.00 0.00 5.19
1326 1327 1.506028 TTAACCCCCTTCCTGCCCTG 61.506 60.000 0.00 0.00 0.00 4.45
1327 1328 2.424989 TAACCCCCTTCCTGCCCTGA 62.425 60.000 0.00 0.00 0.00 3.86
1328 1329 2.697644 CCCCCTTCCTGCCCTGAT 60.698 66.667 0.00 0.00 0.00 2.90
1329 1330 2.319762 CCCCCTTCCTGCCCTGATT 61.320 63.158 0.00 0.00 0.00 2.57
1330 1331 1.076485 CCCCTTCCTGCCCTGATTG 60.076 63.158 0.00 0.00 0.00 2.67
1331 1332 1.755783 CCCTTCCTGCCCTGATTGC 60.756 63.158 0.00 0.00 0.00 3.56
1332 1333 1.305623 CCTTCCTGCCCTGATTGCT 59.694 57.895 0.00 0.00 0.00 3.91
1333 1334 0.324091 CCTTCCTGCCCTGATTGCTT 60.324 55.000 0.00 0.00 0.00 3.91
1334 1335 0.815734 CTTCCTGCCCTGATTGCTTG 59.184 55.000 0.00 0.00 0.00 4.01
1335 1336 0.112995 TTCCTGCCCTGATTGCTTGT 59.887 50.000 0.00 0.00 0.00 3.16
1336 1337 0.609957 TCCTGCCCTGATTGCTTGTG 60.610 55.000 0.00 0.00 0.00 3.33
1337 1338 1.214589 CTGCCCTGATTGCTTGTGC 59.785 57.895 0.00 0.00 40.20 4.57
1338 1339 2.221906 CTGCCCTGATTGCTTGTGCC 62.222 60.000 0.00 0.00 38.71 5.01
1339 1340 2.277591 GCCCTGATTGCTTGTGCCA 61.278 57.895 0.00 0.00 38.71 4.92
1340 1341 1.610554 GCCCTGATTGCTTGTGCCAT 61.611 55.000 0.00 0.00 38.71 4.40
1341 1342 0.174845 CCCTGATTGCTTGTGCCATG 59.825 55.000 0.00 0.00 38.71 3.66
1342 1343 1.179152 CCTGATTGCTTGTGCCATGA 58.821 50.000 0.00 0.00 38.71 3.07
1343 1344 1.754803 CCTGATTGCTTGTGCCATGAT 59.245 47.619 0.00 0.00 38.71 2.45
1344 1345 2.167693 CCTGATTGCTTGTGCCATGATT 59.832 45.455 0.00 0.00 38.71 2.57
1345 1346 3.369052 CCTGATTGCTTGTGCCATGATTT 60.369 43.478 0.00 0.00 38.71 2.17
1346 1347 3.591023 TGATTGCTTGTGCCATGATTTG 58.409 40.909 0.00 0.00 38.71 2.32
1347 1348 1.798283 TTGCTTGTGCCATGATTTGC 58.202 45.000 0.00 0.00 38.71 3.68
1348 1349 0.970640 TGCTTGTGCCATGATTTGCT 59.029 45.000 0.00 0.00 38.71 3.91
1349 1350 1.067425 TGCTTGTGCCATGATTTGCTC 60.067 47.619 0.00 0.00 38.71 4.26
1350 1351 1.738030 GCTTGTGCCATGATTTGCTCC 60.738 52.381 0.00 0.00 0.00 4.70
1351 1352 0.527113 TTGTGCCATGATTTGCTCCG 59.473 50.000 0.00 0.00 0.00 4.63
1352 1353 0.608856 TGTGCCATGATTTGCTCCGT 60.609 50.000 0.00 0.00 0.00 4.69
1353 1354 0.179156 GTGCCATGATTTGCTCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
1354 1355 0.608856 TGCCATGATTTGCTCCGTGT 60.609 50.000 0.00 0.00 0.00 4.49
1355 1356 0.527565 GCCATGATTTGCTCCGTGTT 59.472 50.000 0.00 0.00 0.00 3.32
1356 1357 1.067635 GCCATGATTTGCTCCGTGTTT 60.068 47.619 0.00 0.00 0.00 2.83
1418 1419 0.179108 ACGCGCTCCTTATTGGACTC 60.179 55.000 5.73 0.00 40.56 3.36
1455 1456 3.055167 AGGTACATGTTGTGCAGCTCATA 60.055 43.478 2.30 0.00 34.53 2.15
1520 1521 3.226777 CTGGTTTTGGTATGTTGTCCCA 58.773 45.455 0.00 0.00 0.00 4.37
1521 1522 3.831911 CTGGTTTTGGTATGTTGTCCCAT 59.168 43.478 0.00 0.00 0.00 4.00
1522 1523 3.829601 TGGTTTTGGTATGTTGTCCCATC 59.170 43.478 0.00 0.00 0.00 3.51
1523 1524 3.119637 GGTTTTGGTATGTTGTCCCATCG 60.120 47.826 0.00 0.00 0.00 3.84
1524 1525 3.704800 TTTGGTATGTTGTCCCATCGA 57.295 42.857 0.00 0.00 0.00 3.59
1525 1526 3.924114 TTGGTATGTTGTCCCATCGAT 57.076 42.857 0.00 0.00 0.00 3.59
1526 1527 3.192541 TGGTATGTTGTCCCATCGATG 57.807 47.619 18.76 18.76 0.00 3.84
1527 1528 2.503765 TGGTATGTTGTCCCATCGATGT 59.496 45.455 23.27 5.45 0.00 3.06
1528 1529 2.872245 GGTATGTTGTCCCATCGATGTG 59.128 50.000 23.27 13.19 0.00 3.21
1529 1530 2.787473 ATGTTGTCCCATCGATGTGT 57.213 45.000 23.27 0.00 0.00 3.72
1530 1531 1.807139 TGTTGTCCCATCGATGTGTG 58.193 50.000 23.27 11.80 0.00 3.82
1531 1532 1.071542 TGTTGTCCCATCGATGTGTGT 59.928 47.619 23.27 0.00 0.00 3.72
1582 1583 5.290493 TGGTAGCTTTCTTCTTGTTCAGA 57.710 39.130 0.00 0.00 0.00 3.27
1595 1596 1.606668 TGTTCAGAAAATGGTCACGGC 59.393 47.619 0.00 0.00 0.00 5.68
1599 1600 1.398390 CAGAAAATGGTCACGGCTAGC 59.602 52.381 6.04 6.04 0.00 3.42
1620 1621 7.011576 GCTAGCTAGATTTCTTTGTTAGTTCCC 59.988 40.741 25.15 0.00 0.00 3.97
1626 1627 5.744666 TTTCTTTGTTAGTTCCCGTCAAG 57.255 39.130 0.00 0.00 0.00 3.02
1853 1855 2.043625 CTGCATTGTTGTGGGCAGT 58.956 52.632 0.00 0.00 46.47 4.40
1863 1865 3.278574 GTTGTGGGCAGTGCTTCATATA 58.721 45.455 16.11 2.97 0.00 0.86
1897 1900 2.282462 CAGTCTTGGGTGGGCCAC 60.282 66.667 28.69 28.69 36.17 5.01
1925 1928 3.775654 GCCTGGCCGTAGCTCTGT 61.776 66.667 7.66 0.00 39.73 3.41
2182 2185 0.034767 TTGCTGGCTCTGGATTCAGG 60.035 55.000 0.00 0.00 41.23 3.86
2199 2202 2.106338 TCAGGCTCAGGTTCATGTTGAA 59.894 45.455 0.00 0.00 33.32 2.69
2200 2203 2.886523 CAGGCTCAGGTTCATGTTGAAA 59.113 45.455 0.00 0.00 38.22 2.69
2211 2214 7.490725 CAGGTTCATGTTGAAATGTGTTGTAAA 59.509 33.333 0.00 0.00 38.22 2.01
2236 2239 3.595819 GTGCCAGCCTGGAACATC 58.404 61.111 17.57 0.00 45.81 3.06
2314 2317 3.378339 GTTCATATGCATTGCTTCTGCC 58.622 45.455 3.54 0.00 38.89 4.85
2407 2418 8.729805 TGTTTATTTTCTGTTTGGCTCAAATT 57.270 26.923 4.07 0.00 35.74 1.82
2408 2419 9.823647 TGTTTATTTTCTGTTTGGCTCAAATTA 57.176 25.926 4.07 0.00 35.74 1.40
2529 2540 8.744011 GTGTACAGTGTAGTCGAATATGAAATC 58.256 37.037 2.39 0.00 0.00 2.17
2551 2562 1.895131 GCCCTTCTTTTCATGCTTGGA 59.105 47.619 0.00 0.00 0.00 3.53
2602 2613 0.599558 TGTTTTCAGCTCATGGCAGC 59.400 50.000 8.58 3.83 44.79 5.25
2710 2721 7.175119 GCCCCTTAATAATTTGACTGATAGACC 59.825 40.741 0.00 0.00 0.00 3.85
2789 2800 3.584834 AGCCTTGTGTGTTTTGTTTGAC 58.415 40.909 0.00 0.00 0.00 3.18
2790 2801 3.006323 AGCCTTGTGTGTTTTGTTTGACA 59.994 39.130 0.00 0.00 0.00 3.58
2858 2869 3.430042 ACAAGGTCATTGATGCACTCT 57.570 42.857 3.86 0.00 41.83 3.24
2872 2883 3.141398 TGCACTCTTAGCAAAAGGTGAG 58.859 45.455 17.00 0.00 39.39 3.51
2889 2900 5.298347 AGGTGAGCTTTTGTACACTCTAAC 58.702 41.667 11.28 3.91 34.28 2.34
2891 2902 4.743644 GTGAGCTTTTGTACACTCTAACGT 59.256 41.667 11.28 0.00 0.00 3.99
2893 2904 5.813672 TGAGCTTTTGTACACTCTAACGTTT 59.186 36.000 5.91 0.00 0.00 3.60
2894 2905 6.019318 TGAGCTTTTGTACACTCTAACGTTTC 60.019 38.462 5.91 0.00 0.00 2.78
2895 2906 6.047231 AGCTTTTGTACACTCTAACGTTTCT 58.953 36.000 5.91 0.00 0.00 2.52
2896 2907 6.018994 AGCTTTTGTACACTCTAACGTTTCTG 60.019 38.462 5.91 0.00 0.00 3.02
2897 2908 6.238022 GCTTTTGTACACTCTAACGTTTCTGT 60.238 38.462 5.91 5.65 0.00 3.41
2916 4168 0.037160 TTGCAGGCAGAGCAGAATGA 59.963 50.000 0.00 0.00 43.75 2.57
2921 4173 2.093606 CAGGCAGAGCAGAATGAAGAGA 60.094 50.000 0.00 0.00 39.69 3.10
2986 4238 1.973515 TCCACAGCTGATGTTGAGTCT 59.026 47.619 23.35 0.00 41.41 3.24
3048 4300 3.584848 AGCCTCACTCACTAACTCCATTT 59.415 43.478 0.00 0.00 0.00 2.32
3052 4304 6.102663 CCTCACTCACTAACTCCATTTACTG 58.897 44.000 0.00 0.00 0.00 2.74
3102 4354 4.406456 TGGATTGCCAACAACAGAAGTAT 58.594 39.130 0.00 0.00 42.49 2.12
3104 4356 6.186957 TGGATTGCCAACAACAGAAGTATAT 58.813 36.000 0.00 0.00 42.49 0.86
3230 4482 8.786826 ATGTTCCTCGTGAATTAACTATTTGA 57.213 30.769 0.00 0.00 34.90 2.69
3231 4483 8.251750 TGTTCCTCGTGAATTAACTATTTGAG 57.748 34.615 0.00 0.00 34.90 3.02
3232 4484 7.876068 TGTTCCTCGTGAATTAACTATTTGAGT 59.124 33.333 0.00 0.00 36.00 3.41
3233 4485 8.718734 GTTCCTCGTGAATTAACTATTTGAGTT 58.281 33.333 0.00 0.00 42.36 3.01
3248 4500 9.247861 ACTATTTGAGTTGGCATTCTTTAATCT 57.752 29.630 0.00 0.00 33.13 2.40
3354 4609 8.789767 AGATGATGGTTCTTCTTCTCCTATTA 57.210 34.615 0.00 0.00 33.76 0.98
3357 4612 8.243961 TGATGGTTCTTCTTCTCCTATTAGAG 57.756 38.462 0.00 0.00 35.04 2.43
3358 4613 7.841729 TGATGGTTCTTCTTCTCCTATTAGAGT 59.158 37.037 0.00 0.00 35.28 3.24
3359 4614 9.357161 GATGGTTCTTCTTCTCCTATTAGAGTA 57.643 37.037 0.00 0.00 35.28 2.59
3374 8400 2.106566 AGAGTATCACTGCCTCACCAG 58.893 52.381 0.00 0.00 37.82 4.00
3422 8448 8.806146 GGTATAATGCCATCCATACTCATTTTT 58.194 33.333 8.48 0.00 32.67 1.94
3662 8694 7.808856 TGCTAAAATTGTATTAACCGGAAACAC 59.191 33.333 9.46 1.57 0.00 3.32
3672 8704 7.925043 ATTAACCGGAAACACAATACATGTA 57.075 32.000 9.46 8.27 41.46 2.29
3732 8766 6.045698 TCTACTTGACTAGCTCGTTAATCG 57.954 41.667 0.00 0.00 41.41 3.34
3764 8798 8.145122 GGTTATGTTTCCTAACCATGAACAAAA 58.855 33.333 7.24 0.00 44.95 2.44
3800 8834 9.865152 TTTGATTAATGGGATCACATCATTAGA 57.135 29.630 11.76 0.00 35.59 2.10
3876 8913 6.111768 AGTATGTTGCTATTGCTTTCTTCG 57.888 37.500 0.00 0.00 40.48 3.79
3982 9020 8.670135 CACAACGTAAATGGGTGATTATAAAGA 58.330 33.333 0.00 0.00 0.00 2.52
3983 9021 9.233649 ACAACGTAAATGGGTGATTATAAAGAA 57.766 29.630 0.00 0.00 0.00 2.52
3984 9022 9.716507 CAACGTAAATGGGTGATTATAAAGAAG 57.283 33.333 0.00 0.00 0.00 2.85
3985 9023 7.927048 ACGTAAATGGGTGATTATAAAGAAGC 58.073 34.615 0.00 0.00 0.00 3.86
3986 9024 7.773690 ACGTAAATGGGTGATTATAAAGAAGCT 59.226 33.333 0.00 0.00 0.00 3.74
3987 9025 8.283291 CGTAAATGGGTGATTATAAAGAAGCTC 58.717 37.037 0.00 0.00 0.00 4.09
3990 9028 8.910351 AATGGGTGATTATAAAGAAGCTCTAC 57.090 34.615 0.00 0.00 0.00 2.59
3991 9029 7.432148 TGGGTGATTATAAAGAAGCTCTACA 57.568 36.000 0.00 0.00 0.00 2.74
3992 9030 7.500992 TGGGTGATTATAAAGAAGCTCTACAG 58.499 38.462 0.00 0.00 0.00 2.74
3993 9031 6.931840 GGGTGATTATAAAGAAGCTCTACAGG 59.068 42.308 0.00 0.00 0.00 4.00
3994 9032 7.419172 GGGTGATTATAAAGAAGCTCTACAGGT 60.419 40.741 0.00 0.00 0.00 4.00
3997 9035 8.198109 TGATTATAAAGAAGCTCTACAGGTGTC 58.802 37.037 0.00 0.00 0.00 3.67
3998 9036 7.719871 TTATAAAGAAGCTCTACAGGTGTCT 57.280 36.000 0.00 0.00 0.00 3.41
4020 9061 8.494433 TGTCTGGTGATTATAAAGGAGCTTTAT 58.506 33.333 0.00 0.00 45.17 1.40
4200 9306 3.650139 GGAACGAGTAAAGAGACTTGCA 58.350 45.455 0.00 0.00 34.59 4.08
4207 9313 5.539048 GAGTAAAGAGACTTGCAGGTAACA 58.461 41.667 0.00 0.00 41.41 2.41
4250 9356 0.663688 CTGACGATCGAATCTCGGGT 59.336 55.000 24.34 0.00 40.88 5.28
4302 9409 3.802139 CGTATGTTGTTATGCGGTCTGAT 59.198 43.478 0.00 0.00 33.41 2.90
4342 9449 9.271921 TGTAGAATATGTAGGAGCCAATATGAT 57.728 33.333 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.159382 CAAGTTACAATGGGAAGCGGT 58.841 47.619 0.00 0.00 0.00 5.68
1 2 2.159382 ACAAGTTACAATGGGAAGCGG 58.841 47.619 0.00 0.00 0.00 5.52
2 3 3.915437 AACAAGTTACAATGGGAAGCG 57.085 42.857 0.00 0.00 0.00 4.68
3 4 4.944048 ACAAACAAGTTACAATGGGAAGC 58.056 39.130 0.00 0.00 0.00 3.86
4 5 6.568869 TGAACAAACAAGTTACAATGGGAAG 58.431 36.000 0.00 0.00 0.00 3.46
5 6 6.531503 TGAACAAACAAGTTACAATGGGAA 57.468 33.333 0.00 0.00 0.00 3.97
6 7 6.511416 CATGAACAAACAAGTTACAATGGGA 58.489 36.000 0.00 0.00 0.00 4.37
7 8 5.177327 GCATGAACAAACAAGTTACAATGGG 59.823 40.000 0.00 0.00 0.00 4.00
8 9 5.984926 AGCATGAACAAACAAGTTACAATGG 59.015 36.000 0.00 0.00 0.00 3.16
9 10 6.696583 TCAGCATGAACAAACAAGTTACAATG 59.303 34.615 0.00 0.00 45.97 2.82
10 11 6.804677 TCAGCATGAACAAACAAGTTACAAT 58.195 32.000 0.00 0.00 45.97 2.71
11 12 6.201226 TCAGCATGAACAAACAAGTTACAA 57.799 33.333 0.00 0.00 45.97 2.41
12 13 5.826601 TCAGCATGAACAAACAAGTTACA 57.173 34.783 0.00 0.00 45.97 2.41
26 27 8.883085 CACATGTCTCGGATGTATCAGCATGA 62.883 46.154 0.00 0.00 40.03 3.07
27 28 3.375782 TGTCTCGGATGTATCAGCATG 57.624 47.619 0.00 0.00 37.54 4.06
28 29 3.323115 ACATGTCTCGGATGTATCAGCAT 59.677 43.478 0.00 0.00 32.12 3.79
29 30 2.695147 ACATGTCTCGGATGTATCAGCA 59.305 45.455 0.00 0.00 32.12 4.41
30 31 3.055591 CACATGTCTCGGATGTATCAGC 58.944 50.000 0.00 0.00 32.64 4.26
31 32 3.055591 GCACATGTCTCGGATGTATCAG 58.944 50.000 0.00 0.00 32.64 2.90
32 33 2.224042 GGCACATGTCTCGGATGTATCA 60.224 50.000 0.00 0.00 32.64 2.15
33 34 2.224042 TGGCACATGTCTCGGATGTATC 60.224 50.000 0.00 0.00 32.64 2.24
34 35 1.762370 TGGCACATGTCTCGGATGTAT 59.238 47.619 0.00 0.00 32.64 2.29
35 36 1.190643 TGGCACATGTCTCGGATGTA 58.809 50.000 0.00 0.00 32.64 2.29
36 37 1.982430 TGGCACATGTCTCGGATGT 59.018 52.632 0.00 0.00 34.24 3.06
37 38 4.939399 TGGCACATGTCTCGGATG 57.061 55.556 0.00 0.00 0.00 3.51
49 50 6.484818 AATGTGCTTTAAAATTCATGGCAC 57.515 33.333 15.65 15.65 45.63 5.01
50 51 6.485984 ACAAATGTGCTTTAAAATTCATGGCA 59.514 30.769 0.00 0.00 0.00 4.92
51 52 6.797995 CACAAATGTGCTTTAAAATTCATGGC 59.202 34.615 0.00 0.00 39.39 4.40
54 55 9.328845 AGAACACAAATGTGCTTTAAAATTCAT 57.671 25.926 13.24 0.00 42.77 2.57
55 56 8.715191 AGAACACAAATGTGCTTTAAAATTCA 57.285 26.923 13.24 0.00 42.77 2.57
56 57 9.034544 AGAGAACACAAATGTGCTTTAAAATTC 57.965 29.630 13.24 7.18 45.66 2.17
57 58 8.819974 CAGAGAACACAAATGTGCTTTAAAATT 58.180 29.630 13.24 0.00 45.66 1.82
58 59 7.042523 GCAGAGAACACAAATGTGCTTTAAAAT 60.043 33.333 13.24 0.00 45.66 1.82
59 60 6.255453 GCAGAGAACACAAATGTGCTTTAAAA 59.745 34.615 13.24 0.00 45.66 1.52
60 61 5.748152 GCAGAGAACACAAATGTGCTTTAAA 59.252 36.000 13.24 0.00 45.66 1.52
61 62 5.280945 GCAGAGAACACAAATGTGCTTTAA 58.719 37.500 13.24 0.00 45.66 1.52
62 63 4.261572 GGCAGAGAACACAAATGTGCTTTA 60.262 41.667 13.24 0.00 45.66 1.85
63 64 3.491447 GGCAGAGAACACAAATGTGCTTT 60.491 43.478 13.24 1.52 45.66 3.51
64 65 2.035066 GGCAGAGAACACAAATGTGCTT 59.965 45.455 13.24 7.16 45.66 3.91
68 69 0.593128 GCGGCAGAGAACACAAATGT 59.407 50.000 0.00 0.00 42.46 2.71
69 70 0.877071 AGCGGCAGAGAACACAAATG 59.123 50.000 1.45 0.00 0.00 2.32
70 71 1.609208 AAGCGGCAGAGAACACAAAT 58.391 45.000 1.45 0.00 0.00 2.32
71 72 2.248280 TAAGCGGCAGAGAACACAAA 57.752 45.000 1.45 0.00 0.00 2.83
72 73 2.248280 TTAAGCGGCAGAGAACACAA 57.752 45.000 1.45 0.00 0.00 3.33
73 74 2.248280 TTTAAGCGGCAGAGAACACA 57.752 45.000 1.45 0.00 0.00 3.72
74 75 2.742053 TCATTTAAGCGGCAGAGAACAC 59.258 45.455 1.45 0.00 0.00 3.32
75 76 3.052455 TCATTTAAGCGGCAGAGAACA 57.948 42.857 1.45 0.00 0.00 3.18
76 77 5.050490 TCTATCATTTAAGCGGCAGAGAAC 58.950 41.667 1.45 0.00 0.00 3.01
77 78 5.276461 TCTATCATTTAAGCGGCAGAGAA 57.724 39.130 1.45 0.00 0.00 2.87
78 79 4.937201 TCTATCATTTAAGCGGCAGAGA 57.063 40.909 1.45 0.00 0.00 3.10
79 80 5.991328 TTTCTATCATTTAAGCGGCAGAG 57.009 39.130 1.45 0.00 0.00 3.35
80 81 6.751514 TTTTTCTATCATTTAAGCGGCAGA 57.248 33.333 1.45 0.00 0.00 4.26
81 82 6.974622 ACATTTTTCTATCATTTAAGCGGCAG 59.025 34.615 1.45 0.00 0.00 4.85
82 83 6.862209 ACATTTTTCTATCATTTAAGCGGCA 58.138 32.000 1.45 0.00 0.00 5.69
83 84 8.850454 TTACATTTTTCTATCATTTAAGCGGC 57.150 30.769 0.00 0.00 0.00 6.53
104 105 8.098286 GCCAATATACCACCATATACACTTACA 58.902 37.037 0.00 0.00 0.00 2.41
105 106 7.277098 CGCCAATATACCACCATATACACTTAC 59.723 40.741 0.00 0.00 0.00 2.34
106 107 7.178805 TCGCCAATATACCACCATATACACTTA 59.821 37.037 0.00 0.00 0.00 2.24
107 108 6.014070 TCGCCAATATACCACCATATACACTT 60.014 38.462 0.00 0.00 0.00 3.16
108 109 5.482526 TCGCCAATATACCACCATATACACT 59.517 40.000 0.00 0.00 0.00 3.55
109 110 5.726397 TCGCCAATATACCACCATATACAC 58.274 41.667 0.00 0.00 0.00 2.90
110 111 6.553953 ATCGCCAATATACCACCATATACA 57.446 37.500 0.00 0.00 0.00 2.29
111 112 8.364894 TGATATCGCCAATATACCACCATATAC 58.635 37.037 0.00 0.00 30.37 1.47
112 113 8.485578 TGATATCGCCAATATACCACCATATA 57.514 34.615 0.00 0.00 30.37 0.86
113 114 7.373617 TGATATCGCCAATATACCACCATAT 57.626 36.000 0.00 0.00 30.37 1.78
114 115 6.800072 TGATATCGCCAATATACCACCATA 57.200 37.500 0.00 0.00 30.37 2.74
115 116 5.692115 TGATATCGCCAATATACCACCAT 57.308 39.130 0.00 0.00 30.37 3.55
116 117 5.188751 TCATGATATCGCCAATATACCACCA 59.811 40.000 0.00 0.00 30.37 4.17
117 118 5.670485 TCATGATATCGCCAATATACCACC 58.330 41.667 0.00 0.00 30.37 4.61
118 119 6.256539 CACTCATGATATCGCCAATATACCAC 59.743 42.308 0.00 0.00 30.37 4.16
119 120 6.070824 ACACTCATGATATCGCCAATATACCA 60.071 38.462 0.00 0.00 30.37 3.25
120 121 6.341316 ACACTCATGATATCGCCAATATACC 58.659 40.000 0.00 0.00 30.37 2.73
121 122 7.834068 AACACTCATGATATCGCCAATATAC 57.166 36.000 0.00 0.00 30.37 1.47
122 123 8.846943 AAAACACTCATGATATCGCCAATATA 57.153 30.769 0.00 0.00 30.37 0.86
123 124 7.360353 CGAAAACACTCATGATATCGCCAATAT 60.360 37.037 0.00 0.00 33.03 1.28
124 125 6.073819 CGAAAACACTCATGATATCGCCAATA 60.074 38.462 0.00 0.00 0.00 1.90
125 126 5.277490 CGAAAACACTCATGATATCGCCAAT 60.277 40.000 0.00 0.00 0.00 3.16
126 127 4.033932 CGAAAACACTCATGATATCGCCAA 59.966 41.667 0.00 0.00 0.00 4.52
127 128 3.555547 CGAAAACACTCATGATATCGCCA 59.444 43.478 0.00 0.00 0.00 5.69
128 129 3.555956 ACGAAAACACTCATGATATCGCC 59.444 43.478 0.00 0.00 33.73 5.54
129 130 4.778842 ACGAAAACACTCATGATATCGC 57.221 40.909 0.00 0.00 33.73 4.58
130 131 4.957967 GCAACGAAAACACTCATGATATCG 59.042 41.667 0.00 3.41 35.29 2.92
131 132 6.111768 AGCAACGAAAACACTCATGATATC 57.888 37.500 0.00 0.00 0.00 1.63
132 133 6.500684 AAGCAACGAAAACACTCATGATAT 57.499 33.333 0.00 0.00 0.00 1.63
133 134 5.940192 AAGCAACGAAAACACTCATGATA 57.060 34.783 0.00 0.00 0.00 2.15
134 135 4.836125 AAGCAACGAAAACACTCATGAT 57.164 36.364 0.00 0.00 0.00 2.45
135 136 4.095632 TGAAAGCAACGAAAACACTCATGA 59.904 37.500 0.00 0.00 0.00 3.07
136 137 4.350346 TGAAAGCAACGAAAACACTCATG 58.650 39.130 0.00 0.00 0.00 3.07
137 138 4.630894 TGAAAGCAACGAAAACACTCAT 57.369 36.364 0.00 0.00 0.00 2.90
138 139 4.350346 CATGAAAGCAACGAAAACACTCA 58.650 39.130 0.00 0.00 0.00 3.41
139 140 3.180387 GCATGAAAGCAACGAAAACACTC 59.820 43.478 0.00 0.00 0.00 3.51
140 141 3.115554 GCATGAAAGCAACGAAAACACT 58.884 40.909 0.00 0.00 0.00 3.55
141 142 2.857152 TGCATGAAAGCAACGAAAACAC 59.143 40.909 0.00 0.00 42.46 3.32
142 143 3.156511 TGCATGAAAGCAACGAAAACA 57.843 38.095 0.00 0.00 42.46 2.83
152 153 6.554419 TGTTCAATACTGTATGCATGAAAGC 58.446 36.000 10.16 5.32 0.00 3.51
159 160 9.845740 AGGTTTATATGTTCAATACTGTATGCA 57.154 29.630 0.22 0.00 0.00 3.96
185 186 3.008049 GGTTCTGCCTAGGAGTTCTTGAA 59.992 47.826 14.75 2.49 0.00 2.69
187 188 2.675317 CGGTTCTGCCTAGGAGTTCTTG 60.675 54.545 14.75 0.00 34.25 3.02
203 204 0.240945 CAACATGGAGGCAACGGTTC 59.759 55.000 0.00 0.00 46.39 3.62
205 206 2.268076 GCAACATGGAGGCAACGGT 61.268 57.895 0.00 0.00 46.39 4.83
207 208 0.957395 AGAGCAACATGGAGGCAACG 60.957 55.000 0.00 0.00 46.39 4.10
208 209 2.113860 TAGAGCAACATGGAGGCAAC 57.886 50.000 0.00 0.00 0.00 4.17
209 210 4.502105 TTATAGAGCAACATGGAGGCAA 57.498 40.909 0.00 0.00 0.00 4.52
210 211 4.199310 GTTTATAGAGCAACATGGAGGCA 58.801 43.478 0.00 0.00 0.00 4.75
211 212 3.248602 CGTTTATAGAGCAACATGGAGGC 59.751 47.826 0.00 0.00 0.00 4.70
213 214 4.025396 CAGCGTTTATAGAGCAACATGGAG 60.025 45.833 0.00 0.00 0.00 3.86
214 215 3.871006 CAGCGTTTATAGAGCAACATGGA 59.129 43.478 0.00 0.00 0.00 3.41
218 219 3.120338 GCAACAGCGTTTATAGAGCAACA 60.120 43.478 0.00 0.00 0.00 3.33
221 222 2.006888 GGCAACAGCGTTTATAGAGCA 58.993 47.619 0.00 0.00 0.00 4.26
222 223 2.006888 TGGCAACAGCGTTTATAGAGC 58.993 47.619 0.00 0.00 46.17 4.09
237 238 1.271102 GAAAATTACAGGCGGTGGCAA 59.729 47.619 0.00 0.00 42.47 4.52
268 269 5.497474 ACGTGAAATTACTAAGATGCCCTT 58.503 37.500 0.00 0.00 38.87 3.95
295 296 4.021280 TGACTTTTATACCCTGTACGTGCA 60.021 41.667 6.10 6.10 0.00 4.57
296 297 4.328169 GTGACTTTTATACCCTGTACGTGC 59.672 45.833 0.00 0.00 0.00 5.34
306 307 1.669265 GCAGCGGGTGACTTTTATACC 59.331 52.381 12.03 0.00 0.00 2.73
1026 1027 2.914777 GATCGAGGCCACACTCCTGC 62.915 65.000 5.01 0.00 33.24 4.85
1066 1067 1.649321 TGAGAGGGCTGAAGATGTGT 58.351 50.000 0.00 0.00 0.00 3.72
1069 1070 3.468770 CTGATTGAGAGGGCTGAAGATG 58.531 50.000 0.00 0.00 0.00 2.90
1092 1093 0.314935 AAATGCAAAGGAGGCACGTG 59.685 50.000 12.28 12.28 45.23 4.49
1112 1113 8.729756 GCAAAAATGGGCTAATTAAGAACAAAT 58.270 29.630 0.00 0.00 0.00 2.32
1156 1157 3.141398 CCCTCATGTTCATATTGGACGG 58.859 50.000 0.00 0.00 0.00 4.79
1176 1177 3.494232 ACAACGTGCGCATAATTAAACC 58.506 40.909 15.91 0.00 0.00 3.27
1235 1236 2.562635 CATGAGCTGAATGTCCTCCTG 58.437 52.381 0.00 0.00 0.00 3.86
1236 1237 1.489649 CCATGAGCTGAATGTCCTCCT 59.510 52.381 0.00 0.00 0.00 3.69
1237 1238 1.964552 CCATGAGCTGAATGTCCTCC 58.035 55.000 0.00 0.00 0.00 4.30
1238 1239 1.307097 GCCATGAGCTGAATGTCCTC 58.693 55.000 0.00 0.00 38.99 3.71
1239 1240 0.622136 TGCCATGAGCTGAATGTCCT 59.378 50.000 0.00 0.00 44.23 3.85
1240 1241 1.022735 CTGCCATGAGCTGAATGTCC 58.977 55.000 0.00 0.00 42.76 4.02
1241 1242 2.034104 TCTGCCATGAGCTGAATGTC 57.966 50.000 11.45 0.00 45.40 3.06
1247 1248 4.757019 ATCCTATATCTGCCATGAGCTG 57.243 45.455 0.00 0.28 44.23 4.24
1248 1249 4.080469 CCAATCCTATATCTGCCATGAGCT 60.080 45.833 0.00 0.00 44.23 4.09
1249 1250 4.080695 TCCAATCCTATATCTGCCATGAGC 60.081 45.833 0.00 0.00 44.14 4.26
1250 1251 5.688814 TCCAATCCTATATCTGCCATGAG 57.311 43.478 0.00 0.00 0.00 2.90
1251 1252 5.489997 ACATCCAATCCTATATCTGCCATGA 59.510 40.000 0.00 0.00 0.00 3.07
1252 1253 5.752650 ACATCCAATCCTATATCTGCCATG 58.247 41.667 0.00 0.00 0.00 3.66
1253 1254 5.730207 AGACATCCAATCCTATATCTGCCAT 59.270 40.000 0.00 0.00 0.00 4.40
1254 1255 5.096521 AGACATCCAATCCTATATCTGCCA 58.903 41.667 0.00 0.00 0.00 4.92
1255 1256 5.690464 AGACATCCAATCCTATATCTGCC 57.310 43.478 0.00 0.00 0.00 4.85
1256 1257 7.123397 TCTGTAGACATCCAATCCTATATCTGC 59.877 40.741 0.00 0.00 0.00 4.26
1257 1258 8.586879 TCTGTAGACATCCAATCCTATATCTG 57.413 38.462 0.00 0.00 0.00 2.90
1258 1259 9.781425 AATCTGTAGACATCCAATCCTATATCT 57.219 33.333 0.00 0.00 0.00 1.98
1260 1261 9.781425 AGAATCTGTAGACATCCAATCCTATAT 57.219 33.333 0.00 0.00 0.00 0.86
1261 1262 9.249053 GAGAATCTGTAGACATCCAATCCTATA 57.751 37.037 0.00 0.00 0.00 1.31
1262 1263 7.732140 TGAGAATCTGTAGACATCCAATCCTAT 59.268 37.037 0.00 0.00 34.92 2.57
1263 1264 7.069344 TGAGAATCTGTAGACATCCAATCCTA 58.931 38.462 0.00 0.00 34.92 2.94
1264 1265 5.901853 TGAGAATCTGTAGACATCCAATCCT 59.098 40.000 0.00 0.00 34.92 3.24
1265 1266 6.166984 TGAGAATCTGTAGACATCCAATCC 57.833 41.667 0.00 0.00 34.92 3.01
1266 1267 8.557864 CAATTGAGAATCTGTAGACATCCAATC 58.442 37.037 0.00 0.00 34.92 2.67
1267 1268 8.270030 TCAATTGAGAATCTGTAGACATCCAAT 58.730 33.333 3.38 0.00 34.92 3.16
1268 1269 7.623630 TCAATTGAGAATCTGTAGACATCCAA 58.376 34.615 3.38 0.00 34.92 3.53
1269 1270 7.186570 TCAATTGAGAATCTGTAGACATCCA 57.813 36.000 3.38 0.00 34.92 3.41
1270 1271 6.705381 CCTCAATTGAGAATCTGTAGACATCC 59.295 42.308 32.49 0.00 44.74 3.51
1271 1272 7.271511 ACCTCAATTGAGAATCTGTAGACATC 58.728 38.462 32.49 0.00 44.74 3.06
1272 1273 7.093156 TGACCTCAATTGAGAATCTGTAGACAT 60.093 37.037 32.49 2.58 44.74 3.06
1273 1274 6.211384 TGACCTCAATTGAGAATCTGTAGACA 59.789 38.462 32.49 17.60 44.74 3.41
1274 1275 6.634805 TGACCTCAATTGAGAATCTGTAGAC 58.365 40.000 32.49 15.57 44.74 2.59
1275 1276 6.665248 TCTGACCTCAATTGAGAATCTGTAGA 59.335 38.462 32.49 22.55 44.74 2.59
1276 1277 6.871844 TCTGACCTCAATTGAGAATCTGTAG 58.128 40.000 32.49 21.12 44.74 2.74
1277 1278 6.857437 TCTGACCTCAATTGAGAATCTGTA 57.143 37.500 32.49 18.72 44.74 2.74
1278 1279 5.752036 TCTGACCTCAATTGAGAATCTGT 57.248 39.130 32.49 22.00 44.74 3.41
1279 1280 5.759273 GGATCTGACCTCAATTGAGAATCTG 59.241 44.000 32.49 27.81 44.74 2.90
1280 1281 5.163216 GGGATCTGACCTCAATTGAGAATCT 60.163 44.000 32.49 15.48 44.74 2.40
1281 1282 5.062528 GGGATCTGACCTCAATTGAGAATC 58.937 45.833 32.49 27.01 44.74 2.52
1282 1283 4.444022 CGGGATCTGACCTCAATTGAGAAT 60.444 45.833 32.49 21.38 44.74 2.40
1283 1284 3.118629 CGGGATCTGACCTCAATTGAGAA 60.119 47.826 32.49 18.02 44.74 2.87
1284 1285 2.432146 CGGGATCTGACCTCAATTGAGA 59.568 50.000 32.49 15.71 44.74 3.27
1285 1286 2.169352 ACGGGATCTGACCTCAATTGAG 59.831 50.000 25.75 25.75 41.71 3.02
1286 1287 2.187958 ACGGGATCTGACCTCAATTGA 58.812 47.619 8.12 8.12 0.00 2.57
1287 1288 2.698855 ACGGGATCTGACCTCAATTG 57.301 50.000 0.00 0.00 0.00 2.32
1288 1289 3.721087 AAACGGGATCTGACCTCAATT 57.279 42.857 0.00 0.00 0.00 2.32
1289 1290 4.514401 GTTAAACGGGATCTGACCTCAAT 58.486 43.478 0.00 0.00 0.00 2.57
1290 1291 3.307199 GGTTAAACGGGATCTGACCTCAA 60.307 47.826 0.00 0.00 0.00 3.02
1291 1292 2.235402 GGTTAAACGGGATCTGACCTCA 59.765 50.000 0.00 0.00 0.00 3.86
1292 1293 2.419713 GGGTTAAACGGGATCTGACCTC 60.420 54.545 0.00 0.00 0.00 3.85
1293 1294 1.558294 GGGTTAAACGGGATCTGACCT 59.442 52.381 0.00 0.00 0.00 3.85
1294 1295 1.407851 GGGGTTAAACGGGATCTGACC 60.408 57.143 0.00 0.00 0.00 4.02
1295 1296 1.407851 GGGGGTTAAACGGGATCTGAC 60.408 57.143 0.00 0.00 0.00 3.51
1296 1297 0.913924 GGGGGTTAAACGGGATCTGA 59.086 55.000 0.00 0.00 0.00 3.27
1297 1298 0.916809 AGGGGGTTAAACGGGATCTG 59.083 55.000 0.00 0.00 0.00 2.90
1298 1299 1.562942 GAAGGGGGTTAAACGGGATCT 59.437 52.381 0.00 0.00 0.00 2.75
1299 1300 1.409241 GGAAGGGGGTTAAACGGGATC 60.409 57.143 0.00 0.00 0.00 3.36
1300 1301 0.627451 GGAAGGGGGTTAAACGGGAT 59.373 55.000 0.00 0.00 0.00 3.85
1301 1302 0.476219 AGGAAGGGGGTTAAACGGGA 60.476 55.000 0.00 0.00 0.00 5.14
1302 1303 0.323087 CAGGAAGGGGGTTAAACGGG 60.323 60.000 0.00 0.00 0.00 5.28
1303 1304 0.963856 GCAGGAAGGGGGTTAAACGG 60.964 60.000 0.00 0.00 0.00 4.44
1304 1305 0.963856 GGCAGGAAGGGGGTTAAACG 60.964 60.000 0.00 0.00 0.00 3.60
1305 1306 0.613853 GGGCAGGAAGGGGGTTAAAC 60.614 60.000 0.00 0.00 0.00 2.01
1306 1307 0.778479 AGGGCAGGAAGGGGGTTAAA 60.778 55.000 0.00 0.00 0.00 1.52
1307 1308 1.151452 AGGGCAGGAAGGGGGTTAA 60.151 57.895 0.00 0.00 0.00 2.01
1308 1309 1.928567 CAGGGCAGGAAGGGGGTTA 60.929 63.158 0.00 0.00 0.00 2.85
1309 1310 3.268032 CAGGGCAGGAAGGGGGTT 61.268 66.667 0.00 0.00 0.00 4.11
1310 1311 3.603330 ATCAGGGCAGGAAGGGGGT 62.603 63.158 0.00 0.00 0.00 4.95
1311 1312 2.319762 AATCAGGGCAGGAAGGGGG 61.320 63.158 0.00 0.00 0.00 5.40
1312 1313 1.076485 CAATCAGGGCAGGAAGGGG 60.076 63.158 0.00 0.00 0.00 4.79
1313 1314 1.755783 GCAATCAGGGCAGGAAGGG 60.756 63.158 0.00 0.00 0.00 3.95
1314 1315 0.324091 AAGCAATCAGGGCAGGAAGG 60.324 55.000 0.00 0.00 0.00 3.46
1315 1316 0.815734 CAAGCAATCAGGGCAGGAAG 59.184 55.000 0.00 0.00 0.00 3.46
1316 1317 0.112995 ACAAGCAATCAGGGCAGGAA 59.887 50.000 0.00 0.00 0.00 3.36
1317 1318 0.609957 CACAAGCAATCAGGGCAGGA 60.610 55.000 0.00 0.00 0.00 3.86
1318 1319 1.888018 CACAAGCAATCAGGGCAGG 59.112 57.895 0.00 0.00 0.00 4.85
1319 1320 1.214589 GCACAAGCAATCAGGGCAG 59.785 57.895 0.00 0.00 41.58 4.85
1320 1321 2.277591 GGCACAAGCAATCAGGGCA 61.278 57.895 0.00 0.00 44.61 5.36
1321 1322 2.277591 TGGCACAAGCAATCAGGGC 61.278 57.895 0.00 0.00 44.61 5.19
1322 1323 4.100479 TGGCACAAGCAATCAGGG 57.900 55.556 0.00 0.00 44.61 4.45
1334 1335 0.179156 CACGGAGCAAATCATGGCAC 60.179 55.000 0.00 0.00 0.00 5.01
1335 1336 0.608856 ACACGGAGCAAATCATGGCA 60.609 50.000 0.00 0.00 0.00 4.92
1336 1337 0.527565 AACACGGAGCAAATCATGGC 59.472 50.000 0.00 0.00 0.00 4.40
1337 1338 2.598589 CAAACACGGAGCAAATCATGG 58.401 47.619 0.00 0.00 0.00 3.66
1338 1339 2.228582 TCCAAACACGGAGCAAATCATG 59.771 45.455 0.00 0.00 0.00 3.07
1339 1340 2.513753 TCCAAACACGGAGCAAATCAT 58.486 42.857 0.00 0.00 0.00 2.45
1340 1341 1.974265 TCCAAACACGGAGCAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
1341 1342 2.487762 TCATCCAAACACGGAGCAAATC 59.512 45.455 0.00 0.00 38.83 2.17
1342 1343 2.489329 CTCATCCAAACACGGAGCAAAT 59.511 45.455 0.00 0.00 38.83 2.32
1343 1344 1.879380 CTCATCCAAACACGGAGCAAA 59.121 47.619 0.00 0.00 38.83 3.68
1344 1345 1.522668 CTCATCCAAACACGGAGCAA 58.477 50.000 0.00 0.00 38.83 3.91
1345 1346 0.321564 CCTCATCCAAACACGGAGCA 60.322 55.000 0.00 0.00 38.83 4.26
1346 1347 0.036388 TCCTCATCCAAACACGGAGC 60.036 55.000 0.00 0.00 38.83 4.70
1347 1348 2.289694 ACTTCCTCATCCAAACACGGAG 60.290 50.000 0.00 0.00 38.83 4.63
1348 1349 1.697432 ACTTCCTCATCCAAACACGGA 59.303 47.619 0.00 0.00 40.07 4.69
1349 1350 2.185004 ACTTCCTCATCCAAACACGG 57.815 50.000 0.00 0.00 0.00 4.94
1350 1351 3.927142 GTCTACTTCCTCATCCAAACACG 59.073 47.826 0.00 0.00 0.00 4.49
1351 1352 4.254492 GGTCTACTTCCTCATCCAAACAC 58.746 47.826 0.00 0.00 0.00 3.32
1352 1353 3.907474 TGGTCTACTTCCTCATCCAAACA 59.093 43.478 0.00 0.00 0.00 2.83
1353 1354 4.508662 CTGGTCTACTTCCTCATCCAAAC 58.491 47.826 0.00 0.00 0.00 2.93
1354 1355 3.055094 GCTGGTCTACTTCCTCATCCAAA 60.055 47.826 0.00 0.00 0.00 3.28
1355 1356 2.501723 GCTGGTCTACTTCCTCATCCAA 59.498 50.000 0.00 0.00 0.00 3.53
1356 1357 2.111384 GCTGGTCTACTTCCTCATCCA 58.889 52.381 0.00 0.00 0.00 3.41
1432 1433 2.301583 TGAGCTGCACAACATGTACCTA 59.698 45.455 0.00 0.00 0.00 3.08
1520 1521 3.044235 ACACACATCACACACATCGAT 57.956 42.857 0.00 0.00 0.00 3.59
1521 1522 2.524569 ACACACATCACACACATCGA 57.475 45.000 0.00 0.00 0.00 3.59
1522 1523 3.120683 GGTAACACACATCACACACATCG 60.121 47.826 0.00 0.00 0.00 3.84
1523 1524 4.065088 AGGTAACACACATCACACACATC 58.935 43.478 0.00 0.00 41.41 3.06
1524 1525 4.085357 AGGTAACACACATCACACACAT 57.915 40.909 0.00 0.00 41.41 3.21
1525 1526 3.552132 AGGTAACACACATCACACACA 57.448 42.857 0.00 0.00 41.41 3.72
1526 1527 5.054477 ACTAAGGTAACACACATCACACAC 58.946 41.667 0.00 0.00 41.41 3.82
1527 1528 5.284861 ACTAAGGTAACACACATCACACA 57.715 39.130 0.00 0.00 41.41 3.72
1528 1529 5.756347 TCAACTAAGGTAACACACATCACAC 59.244 40.000 0.00 0.00 41.41 3.82
1529 1530 5.919755 TCAACTAAGGTAACACACATCACA 58.080 37.500 0.00 0.00 41.41 3.58
1530 1531 7.817962 AGTATCAACTAAGGTAACACACATCAC 59.182 37.037 0.00 0.00 33.75 3.06
1531 1532 7.817478 CAGTATCAACTAAGGTAACACACATCA 59.183 37.037 0.00 0.00 34.12 3.07
1582 1583 2.500098 TCTAGCTAGCCGTGACCATTTT 59.500 45.455 16.35 0.00 0.00 1.82
1595 1596 7.222999 CGGGAACTAACAAAGAAATCTAGCTAG 59.777 40.741 15.01 15.01 0.00 3.42
1599 1600 6.872020 TGACGGGAACTAACAAAGAAATCTAG 59.128 38.462 0.00 0.00 0.00 2.43
1620 1621 7.592938 AGCTAGAGATGAGAATATTCTTGACG 58.407 38.462 18.88 4.79 37.73 4.35
1626 1627 9.801873 GGAATGTAGCTAGAGATGAGAATATTC 57.198 37.037 7.41 7.41 0.00 1.75
1705 1707 2.489329 GCTACATCCAAAGCTTTGCTCA 59.511 45.455 29.93 17.52 38.25 4.26
1744 1746 7.655236 CATTGCATGGAAGACAACAAAAATA 57.345 32.000 5.69 0.00 34.27 1.40
1853 1855 9.762933 AAGCAAAAAGAAGTTTTATATGAAGCA 57.237 25.926 0.00 0.00 37.32 3.91
1863 1865 6.591448 CCAAGACTGAAGCAAAAAGAAGTTTT 59.409 34.615 0.00 0.00 40.16 2.43
1925 1928 0.536460 GGAAACCAAGGAAGCACCGA 60.536 55.000 0.00 0.00 44.74 4.69
1974 1977 8.359642 CCAAAGAACATAGAACAGAAAAATCCA 58.640 33.333 0.00 0.00 0.00 3.41
2182 2185 4.232221 CACATTTCAACATGAACCTGAGC 58.768 43.478 0.00 0.00 35.89 4.26
2211 2214 1.077005 TCCAGGCTGGCACCTAATTTT 59.923 47.619 29.02 0.00 38.26 1.82
2225 2228 6.024552 TGTAAATTTTCTGATGTTCCAGGC 57.975 37.500 0.00 0.00 34.99 4.85
2436 2447 3.075005 AGCCGGCCAGACACGTAT 61.075 61.111 26.15 0.00 0.00 3.06
2500 2511 7.049754 TCATATTCGACTACACTGTACACCTA 58.950 38.462 0.00 0.00 0.00 3.08
2510 2521 5.177696 GGGCTGATTTCATATTCGACTACAC 59.822 44.000 0.00 0.00 0.00 2.90
2515 2526 5.059833 AGAAGGGCTGATTTCATATTCGAC 58.940 41.667 0.00 0.00 0.00 4.20
2529 2540 2.353406 CCAAGCATGAAAAGAAGGGCTG 60.353 50.000 0.00 0.00 0.00 4.85
2551 2562 9.733556 TGAAATAAGTACTAACCAACACATCAT 57.266 29.630 0.00 0.00 0.00 2.45
2602 2613 3.584406 TCTGTAGGCATCCAATCCCATAG 59.416 47.826 0.00 0.00 0.00 2.23
2710 2721 5.637006 TTTCTCCATAATTTGACAACCCG 57.363 39.130 0.00 0.00 0.00 5.28
2789 2800 1.820906 CACCGGTGCCATCTGGATG 60.821 63.158 24.02 3.79 37.31 3.51
2790 2801 1.976132 CTCACCGGTGCCATCTGGAT 61.976 60.000 30.25 0.00 37.31 3.41
2818 2829 1.878522 GTAGTGGTCGATGCCTGCG 60.879 63.158 0.00 0.00 0.00 5.18
2872 2883 6.127403 CAGAAACGTTAGAGTGTACAAAAGC 58.873 40.000 0.00 0.00 0.00 3.51
2889 2900 0.236711 CTCTGCCTGCAACAGAAACG 59.763 55.000 17.23 5.48 43.30 3.60
2891 2902 0.466007 TGCTCTGCCTGCAACAGAAA 60.466 50.000 17.23 8.35 43.30 2.52
2893 2904 1.302271 CTGCTCTGCCTGCAACAGA 60.302 57.895 16.06 16.06 41.78 3.41
2894 2905 0.887836 TTCTGCTCTGCCTGCAACAG 60.888 55.000 9.61 9.61 40.13 3.16
2895 2906 0.251033 ATTCTGCTCTGCCTGCAACA 60.251 50.000 0.00 0.00 40.13 3.33
2896 2907 0.170561 CATTCTGCTCTGCCTGCAAC 59.829 55.000 0.00 0.00 40.13 4.17
2897 2908 0.037160 TCATTCTGCTCTGCCTGCAA 59.963 50.000 0.00 0.00 40.13 4.08
2916 4168 2.649312 TCCAACAACATCCCCATCTCTT 59.351 45.455 0.00 0.00 0.00 2.85
2921 4173 2.042842 TCACATCCAACAACATCCCCAT 59.957 45.455 0.00 0.00 0.00 4.00
3139 4391 6.699575 AGCAAACTTCTTTATTGTCACTGT 57.300 33.333 0.00 0.00 0.00 3.55
3205 4457 8.786826 TCAAATAGTTAATTCACGAGGAACAT 57.213 30.769 0.00 0.00 38.60 2.71
3206 4458 7.876068 ACTCAAATAGTTAATTCACGAGGAACA 59.124 33.333 0.00 0.00 34.52 3.18
3207 4459 8.252964 ACTCAAATAGTTAATTCACGAGGAAC 57.747 34.615 0.00 0.00 34.52 3.62
3208 4460 8.842358 AACTCAAATAGTTAATTCACGAGGAA 57.158 30.769 0.00 0.00 46.85 3.36
3222 4474 9.247861 AGATTAAAGAATGCCAACTCAAATAGT 57.752 29.630 0.00 0.00 41.49 2.12
3233 4485 9.866655 AGGAACATATAAGATTAAAGAATGCCA 57.133 29.630 0.00 0.00 0.00 4.92
3251 4503 9.878667 TCAAATAGTTAATTCACGAGGAACATA 57.121 29.630 0.00 0.00 38.60 2.29
3354 4609 2.106566 CTGGTGAGGCAGTGATACTCT 58.893 52.381 0.00 0.00 32.58 3.24
3357 4612 1.195115 TCCTGGTGAGGCAGTGATAC 58.805 55.000 0.00 0.00 39.57 2.24
3358 4613 2.171237 CAATCCTGGTGAGGCAGTGATA 59.829 50.000 0.00 0.00 39.57 2.15
3359 4614 1.064906 CAATCCTGGTGAGGCAGTGAT 60.065 52.381 0.00 0.00 39.57 3.06
3374 8400 7.404671 ACCTTATTATGTTCAACACCAATCC 57.595 36.000 0.00 0.00 0.00 3.01
3403 8429 6.189859 AGAAGAAAAATGAGTATGGATGGCA 58.810 36.000 0.00 0.00 0.00 4.92
3442 8471 4.278170 TCAAACCAATCATGACCAGTGAAC 59.722 41.667 0.00 0.00 0.00 3.18
3443 8472 4.468713 TCAAACCAATCATGACCAGTGAA 58.531 39.130 0.00 0.00 0.00 3.18
3444 8473 4.074259 CTCAAACCAATCATGACCAGTGA 58.926 43.478 0.00 0.00 0.00 3.41
3641 8673 9.628746 GTATTGTGTTTCCGGTTAATACAATTT 57.371 29.630 30.78 20.84 41.50 1.82
3672 8704 8.314021 TGACACTCTGTTTGTCTATGTATTCAT 58.686 33.333 11.01 0.00 43.30 2.57
3764 8798 9.699410 TGATCCCATTAATCAAATAACAACTCT 57.301 29.630 0.00 0.00 30.37 3.24
3800 8834 5.359009 GGGTCATGTCAATCACATCATTCTT 59.641 40.000 0.00 0.00 44.60 2.52
3936 8974 2.747989 TGACGTTTGGTAGCACACAAAA 59.252 40.909 11.43 0.00 38.20 2.44
3966 9004 8.034313 TGTAGAGCTTCTTTATAATCACCCAT 57.966 34.615 0.00 0.00 0.00 4.00
3982 9020 1.620819 CACCAGACACCTGTAGAGCTT 59.379 52.381 0.00 0.00 38.74 3.74
3983 9021 1.203063 TCACCAGACACCTGTAGAGCT 60.203 52.381 0.00 0.00 38.74 4.09
3984 9022 1.257743 TCACCAGACACCTGTAGAGC 58.742 55.000 0.00 0.00 38.74 4.09
3985 9023 5.860941 ATAATCACCAGACACCTGTAGAG 57.139 43.478 0.00 0.00 38.74 2.43
3986 9024 7.147724 CCTTTATAATCACCAGACACCTGTAGA 60.148 40.741 0.00 0.00 38.74 2.59
3987 9025 6.986817 CCTTTATAATCACCAGACACCTGTAG 59.013 42.308 0.00 0.00 38.74 2.74
3989 9027 5.487488 TCCTTTATAATCACCAGACACCTGT 59.513 40.000 0.00 0.00 38.74 4.00
3990 9028 5.989477 TCCTTTATAATCACCAGACACCTG 58.011 41.667 0.00 0.00 40.09 4.00
3991 9029 5.396884 GCTCCTTTATAATCACCAGACACCT 60.397 44.000 0.00 0.00 0.00 4.00
3992 9030 4.816925 GCTCCTTTATAATCACCAGACACC 59.183 45.833 0.00 0.00 0.00 4.16
3993 9031 5.675538 AGCTCCTTTATAATCACCAGACAC 58.324 41.667 0.00 0.00 0.00 3.67
3994 9032 5.957771 AGCTCCTTTATAATCACCAGACA 57.042 39.130 0.00 0.00 0.00 3.41
3997 9035 9.442047 CCTATAAAGCTCCTTTATAATCACCAG 57.558 37.037 14.73 6.64 43.67 4.00
3998 9036 8.945193 ACCTATAAAGCTCCTTTATAATCACCA 58.055 33.333 14.73 0.00 43.67 4.17
4020 9061 2.885135 TGTACCTTCGGAGACACCTA 57.115 50.000 0.00 0.00 34.32 3.08
4232 9338 1.957668 TACCCGAGATTCGATCGTCA 58.042 50.000 15.94 3.44 43.74 4.35
4250 9356 6.154877 TCCCTTTGTCATCGGTATGTTACTTA 59.845 38.462 0.00 0.00 34.50 2.24
4342 9449 1.140852 CCAATAGCGGAACCTGGATGA 59.859 52.381 0.00 0.00 0.00 2.92
4417 9524 0.869730 GAAACCTTAAGCGTGCGGAA 59.130 50.000 0.00 0.00 0.00 4.30
4488 9597 1.662608 CCGATCTCATCCGGGACTG 59.337 63.158 0.00 0.00 41.89 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.