Multiple sequence alignment - TraesCS1A01G362400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G362400 chr1A 100.000 4813 0 0 1 4813 543059578 543064390 0.000000e+00 8889.0
1 TraesCS1A01G362400 chr1A 94.777 651 33 1 4163 4813 484325715 484325066 0.000000e+00 1013.0
2 TraesCS1A01G362400 chr1A 93.374 649 40 3 4166 4813 578784705 578784059 0.000000e+00 957.0
3 TraesCS1A01G362400 chr1A 94.906 530 26 1 4284 4813 2062350 2061822 0.000000e+00 828.0
4 TraesCS1A01G362400 chr1A 93.346 511 33 1 4303 4813 57308123 57308632 0.000000e+00 754.0
5 TraesCS1A01G362400 chr1D 89.418 3572 241 77 578 4071 447254308 447257820 0.000000e+00 4375.0
6 TraesCS1A01G362400 chr1D 86.579 380 34 8 200 569 447243865 447244237 2.090000e-108 403.0
7 TraesCS1A01G362400 chr1D 86.029 136 11 3 1744 1879 447255632 447255759 6.500000e-29 139.0
8 TraesCS1A01G362400 chr1D 91.228 57 3 2 4110 4165 447257987 447258042 5.170000e-10 76.8
9 TraesCS1A01G362400 chr1B 92.477 1768 93 17 2047 3793 612864413 612866161 0.000000e+00 2492.0
10 TraesCS1A01G362400 chr1B 88.841 1398 70 32 438 1789 612862804 612864161 0.000000e+00 1639.0
11 TraesCS1A01G362400 chr1B 86.162 383 44 4 2158 2535 29581615 29581993 5.800000e-109 405.0
12 TraesCS1A01G362400 chr1B 88.542 96 5 4 3795 3886 612866258 612866351 1.420000e-20 111.0
13 TraesCS1A01G362400 chr6A 93.981 648 38 1 4166 4813 60166883 60166237 0.000000e+00 979.0
14 TraesCS1A01G362400 chr5A 93.519 648 40 2 4166 4813 664482897 664482252 0.000000e+00 963.0
15 TraesCS1A01G362400 chr5A 93.210 648 42 2 4166 4813 662392214 662391569 0.000000e+00 952.0
16 TraesCS1A01G362400 chr5A 92.977 655 37 4 4166 4813 487754686 487754034 0.000000e+00 946.0
17 TraesCS1A01G362400 chr2D 92.162 421 33 0 4165 4585 589911343 589911763 3.210000e-166 595.0
18 TraesCS1A01G362400 chr2D 85.714 385 42 6 2158 2535 119817578 119817956 1.260000e-105 394.0
19 TraesCS1A01G362400 chr2D 96.087 230 8 1 4584 4813 429962351 429962123 1.640000e-99 374.0
20 TraesCS1A01G362400 chr2D 94.340 106 4 2 3879 3982 555221199 555221094 1.390000e-35 161.0
21 TraesCS1A01G362400 chr2D 80.460 174 25 5 200 365 328379821 328379993 1.820000e-24 124.0
22 TraesCS1A01G362400 chr2D 76.106 226 39 10 151 365 629594384 629594163 2.370000e-18 104.0
23 TraesCS1A01G362400 chr7D 89.791 431 41 3 4156 4585 138089557 138089985 2.530000e-152 549.0
24 TraesCS1A01G362400 chr7D 89.286 420 43 2 4166 4585 412591242 412590825 4.270000e-145 525.0
25 TraesCS1A01G362400 chr7D 93.519 108 7 0 3887 3994 124168219 124168112 1.390000e-35 161.0
26 TraesCS1A01G362400 chr7D 80.000 80 10 6 1451 1527 436879048 436878972 2.000000e-03 54.7
27 TraesCS1A01G362400 chr3B 94.444 126 7 0 1423 1548 784686332 784686207 1.370000e-45 195.0
28 TraesCS1A01G362400 chr3B 84.677 124 19 0 1415 1538 451530645 451530768 1.820000e-24 124.0
29 TraesCS1A01G362400 chr4A 93.651 126 8 0 1423 1548 711904222 711904097 6.360000e-44 189.0
30 TraesCS1A01G362400 chr4A 95.098 102 5 0 3877 3978 6801357 6801458 1.390000e-35 161.0
31 TraesCS1A01G362400 chr7B 84.530 181 14 3 2163 2335 595525356 595525182 2.980000e-37 167.0
32 TraesCS1A01G362400 chr7B 76.923 117 21 6 1414 1527 453335783 453335670 1.450000e-05 62.1
33 TraesCS1A01G362400 chr5D 96.939 98 1 2 3886 3983 182800835 182800930 3.850000e-36 163.0
34 TraesCS1A01G362400 chr2B 95.146 103 4 1 3875 3976 715721719 715721821 1.390000e-35 161.0
35 TraesCS1A01G362400 chr2B 92.754 69 5 0 1480 1548 748199095 748199027 3.070000e-17 100.0
36 TraesCS1A01G362400 chr6D 96.842 95 3 0 3889 3983 273091536 273091442 4.990000e-35 159.0
37 TraesCS1A01G362400 chr3D 92.857 112 5 3 3864 3974 273202095 273202204 4.990000e-35 159.0
38 TraesCS1A01G362400 chr3D 94.286 105 4 2 3884 3987 611167348 611167245 4.990000e-35 159.0
39 TraesCS1A01G362400 chr3D 86.260 131 18 0 1415 1545 352613340 352613470 5.020000e-30 143.0
40 TraesCS1A01G362400 chr7A 95.918 98 2 2 3885 3981 20732924 20733020 1.790000e-34 158.0
41 TraesCS1A01G362400 chr7A 80.769 78 15 0 1411 1488 485745087 485745164 1.450000e-05 62.1
42 TraesCS1A01G362400 chr3A 82.036 167 28 2 1415 1580 471278853 471279018 1.810000e-29 141.0
43 TraesCS1A01G362400 chr3A 77.305 141 22 7 135 266 617303911 617304050 1.860000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G362400 chr1A 543059578 543064390 4812 False 8889.000000 8889 100.000000 1 4813 1 chr1A.!!$F2 4812
1 TraesCS1A01G362400 chr1A 484325066 484325715 649 True 1013.000000 1013 94.777000 4163 4813 1 chr1A.!!$R2 650
2 TraesCS1A01G362400 chr1A 578784059 578784705 646 True 957.000000 957 93.374000 4166 4813 1 chr1A.!!$R3 647
3 TraesCS1A01G362400 chr1A 2061822 2062350 528 True 828.000000 828 94.906000 4284 4813 1 chr1A.!!$R1 529
4 TraesCS1A01G362400 chr1A 57308123 57308632 509 False 754.000000 754 93.346000 4303 4813 1 chr1A.!!$F1 510
5 TraesCS1A01G362400 chr1D 447254308 447258042 3734 False 1530.266667 4375 88.891667 578 4165 3 chr1D.!!$F2 3587
6 TraesCS1A01G362400 chr1B 612862804 612866351 3547 False 1414.000000 2492 89.953333 438 3886 3 chr1B.!!$F2 3448
7 TraesCS1A01G362400 chr6A 60166237 60166883 646 True 979.000000 979 93.981000 4166 4813 1 chr6A.!!$R1 647
8 TraesCS1A01G362400 chr5A 664482252 664482897 645 True 963.000000 963 93.519000 4166 4813 1 chr5A.!!$R3 647
9 TraesCS1A01G362400 chr5A 662391569 662392214 645 True 952.000000 952 93.210000 4166 4813 1 chr5A.!!$R2 647
10 TraesCS1A01G362400 chr5A 487754034 487754686 652 True 946.000000 946 92.977000 4166 4813 1 chr5A.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 945 0.169672 TTTGTCTCGTCCGATCGTCC 59.830 55.000 15.09 2.67 0.00 4.79 F
1388 1448 0.033366 TGCGATACCGGTGATGATGG 59.967 55.000 19.93 4.91 36.06 3.51 F
1814 1925 1.065564 AGAGATTGAGGCTGAACTGGC 60.066 52.381 0.00 0.00 0.00 4.85 F
3531 3709 0.538057 CAAAGCAAGGCTGGAGGACA 60.538 55.000 0.00 0.00 39.62 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2029 0.038166 TCCACCAGATTCTTGCCACC 59.962 55.000 0.0 0.0 0.00 4.61 R
2881 3048 0.602638 TTGCCTGTCACACCATCGTC 60.603 55.000 0.0 0.0 0.00 4.20 R
3697 3875 0.108472 CAAGCTCCTCGTCATGCTCA 60.108 55.000 0.0 0.0 34.38 4.26 R
4483 4909 1.370064 GGTCACACAACCTACCGCT 59.630 57.895 0.0 0.0 36.32 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.985781 ACAATTATCACACGAAACACAGAC 58.014 37.500 0.00 0.00 0.00 3.51
24 25 4.903638 ATTATCACACGAAACACAGACG 57.096 40.909 0.00 0.00 0.00 4.18
25 26 1.497991 ATCACACGAAACACAGACGG 58.502 50.000 0.00 0.00 0.00 4.79
26 27 1.149361 TCACACGAAACACAGACGGC 61.149 55.000 0.00 0.00 0.00 5.68
27 28 1.153529 ACACGAAACACAGACGGCA 60.154 52.632 0.00 0.00 0.00 5.69
28 29 0.741574 ACACGAAACACAGACGGCAA 60.742 50.000 0.00 0.00 0.00 4.52
29 30 0.586319 CACGAAACACAGACGGCAAT 59.414 50.000 0.00 0.00 0.00 3.56
30 31 0.586319 ACGAAACACAGACGGCAATG 59.414 50.000 0.00 0.00 0.00 2.82
31 32 0.725784 CGAAACACAGACGGCAATGC 60.726 55.000 0.00 0.00 0.00 3.56
32 33 0.387239 GAAACACAGACGGCAATGCC 60.387 55.000 15.52 15.52 46.75 4.40
45 46 3.855689 GCAATGCCATATCCACCATAC 57.144 47.619 0.00 0.00 0.00 2.39
46 47 3.156293 GCAATGCCATATCCACCATACA 58.844 45.455 0.00 0.00 0.00 2.29
47 48 3.573538 GCAATGCCATATCCACCATACAA 59.426 43.478 0.00 0.00 0.00 2.41
48 49 4.321452 GCAATGCCATATCCACCATACAAG 60.321 45.833 0.00 0.00 0.00 3.16
49 50 2.862541 TGCCATATCCACCATACAAGC 58.137 47.619 0.00 0.00 0.00 4.01
50 51 2.162681 GCCATATCCACCATACAAGCC 58.837 52.381 0.00 0.00 0.00 4.35
51 52 2.795329 CCATATCCACCATACAAGCCC 58.205 52.381 0.00 0.00 0.00 5.19
52 53 2.108075 CCATATCCACCATACAAGCCCA 59.892 50.000 0.00 0.00 0.00 5.36
53 54 3.436325 CCATATCCACCATACAAGCCCAA 60.436 47.826 0.00 0.00 0.00 4.12
54 55 2.442236 ATCCACCATACAAGCCCAAG 57.558 50.000 0.00 0.00 0.00 3.61
55 56 0.331278 TCCACCATACAAGCCCAAGG 59.669 55.000 0.00 0.00 0.00 3.61
74 75 3.780925 CTAAAACAGCACCAGCAGC 57.219 52.632 0.00 0.00 45.49 5.25
75 76 1.242076 CTAAAACAGCACCAGCAGCT 58.758 50.000 0.00 0.00 45.49 4.24
89 90 2.543012 CAGCAGCTGGATTAAGTCATCG 59.457 50.000 17.12 0.00 0.00 3.84
90 91 1.262683 GCAGCTGGATTAAGTCATCGC 59.737 52.381 17.12 0.00 0.00 4.58
91 92 1.869767 CAGCTGGATTAAGTCATCGCC 59.130 52.381 5.57 0.00 0.00 5.54
92 93 1.202698 AGCTGGATTAAGTCATCGCCC 60.203 52.381 0.00 0.00 0.00 6.13
93 94 1.475034 GCTGGATTAAGTCATCGCCCA 60.475 52.381 0.00 0.00 0.00 5.36
94 95 2.917933 CTGGATTAAGTCATCGCCCAA 58.082 47.619 0.00 0.00 0.00 4.12
95 96 2.874701 CTGGATTAAGTCATCGCCCAAG 59.125 50.000 0.00 0.00 0.00 3.61
96 97 1.604278 GGATTAAGTCATCGCCCAAGC 59.396 52.381 0.00 0.00 0.00 4.01
106 107 3.793144 GCCCAAGCGCTCGTTGAG 61.793 66.667 12.06 0.00 0.00 3.02
116 117 3.955429 CTCGTTGAGCCAAATGTCG 57.045 52.632 0.00 0.00 0.00 4.35
117 118 1.148310 CTCGTTGAGCCAAATGTCGT 58.852 50.000 0.00 0.00 0.00 4.34
118 119 2.333926 CTCGTTGAGCCAAATGTCGTA 58.666 47.619 0.00 0.00 0.00 3.43
119 120 2.930040 CTCGTTGAGCCAAATGTCGTAT 59.070 45.455 0.00 0.00 0.00 3.06
120 121 2.670905 TCGTTGAGCCAAATGTCGTATG 59.329 45.455 0.00 0.00 0.00 2.39
121 122 2.785679 GTTGAGCCAAATGTCGTATGC 58.214 47.619 0.00 0.00 0.00 3.14
122 123 1.006086 TGAGCCAAATGTCGTATGCG 58.994 50.000 0.00 0.00 39.92 4.73
123 124 1.286501 GAGCCAAATGTCGTATGCGA 58.713 50.000 0.30 0.30 45.79 5.10
177 178 8.854614 AATCTATACATCTATTTTCCCAGTGC 57.145 34.615 0.00 0.00 0.00 4.40
178 179 7.373617 TCTATACATCTATTTTCCCAGTGCA 57.626 36.000 0.00 0.00 0.00 4.57
179 180 7.217200 TCTATACATCTATTTTCCCAGTGCAC 58.783 38.462 9.40 9.40 0.00 4.57
180 181 4.307032 ACATCTATTTTCCCAGTGCACT 57.693 40.909 15.25 15.25 0.00 4.40
181 182 4.666512 ACATCTATTTTCCCAGTGCACTT 58.333 39.130 18.94 3.00 0.00 3.16
182 183 5.079643 ACATCTATTTTCCCAGTGCACTTT 58.920 37.500 18.94 0.00 0.00 2.66
183 184 6.245408 ACATCTATTTTCCCAGTGCACTTTA 58.755 36.000 18.94 2.09 0.00 1.85
184 185 6.719370 ACATCTATTTTCCCAGTGCACTTTAA 59.281 34.615 18.94 8.91 0.00 1.52
185 186 7.232534 ACATCTATTTTCCCAGTGCACTTTAAA 59.767 33.333 18.94 14.53 0.00 1.52
186 187 7.589958 TCTATTTTCCCAGTGCACTTTAAAA 57.410 32.000 18.94 21.58 0.00 1.52
187 188 8.189119 TCTATTTTCCCAGTGCACTTTAAAAT 57.811 30.769 28.60 28.60 0.00 1.82
188 189 9.303116 TCTATTTTCCCAGTGCACTTTAAAATA 57.697 29.630 28.12 28.12 0.00 1.40
189 190 9.573133 CTATTTTCCCAGTGCACTTTAAAATAG 57.427 33.333 32.83 32.83 38.25 1.73
190 191 7.589958 TTTTCCCAGTGCACTTTAAAATAGA 57.410 32.000 18.94 2.33 0.00 1.98
191 192 7.589958 TTTCCCAGTGCACTTTAAAATAGAA 57.410 32.000 18.94 8.36 0.00 2.10
192 193 7.589958 TTCCCAGTGCACTTTAAAATAGAAA 57.410 32.000 18.94 0.00 0.00 2.52
193 194 7.589958 TCCCAGTGCACTTTAAAATAGAAAA 57.410 32.000 18.94 0.00 0.00 2.29
194 195 8.012957 TCCCAGTGCACTTTAAAATAGAAAAA 57.987 30.769 18.94 0.00 0.00 1.94
220 221 8.786826 AAAATCTTATCACACGGTAATCAAGA 57.213 30.769 0.00 0.00 0.00 3.02
221 222 8.964476 AAATCTTATCACACGGTAATCAAGAT 57.036 30.769 0.00 0.00 33.97 2.40
222 223 8.594881 AATCTTATCACACGGTAATCAAGATC 57.405 34.615 0.00 0.00 31.96 2.75
223 224 7.107639 TCTTATCACACGGTAATCAAGATCA 57.892 36.000 0.00 0.00 0.00 2.92
224 225 7.552459 TCTTATCACACGGTAATCAAGATCAA 58.448 34.615 0.00 0.00 0.00 2.57
225 226 8.204160 TCTTATCACACGGTAATCAAGATCAAT 58.796 33.333 0.00 0.00 0.00 2.57
226 227 9.476202 CTTATCACACGGTAATCAAGATCAATA 57.524 33.333 0.00 0.00 0.00 1.90
227 228 9.825109 TTATCACACGGTAATCAAGATCAATAA 57.175 29.630 0.00 0.00 0.00 1.40
228 229 8.908786 ATCACACGGTAATCAAGATCAATAAT 57.091 30.769 0.00 0.00 0.00 1.28
229 230 9.996554 ATCACACGGTAATCAAGATCAATAATA 57.003 29.630 0.00 0.00 0.00 0.98
230 231 9.996554 TCACACGGTAATCAAGATCAATAATAT 57.003 29.630 0.00 0.00 0.00 1.28
244 245 9.770097 AGATCAATAATATTCAACACATCGTCT 57.230 29.630 0.00 0.00 0.00 4.18
246 247 8.365399 TCAATAATATTCAACACATCGTCTCC 57.635 34.615 0.00 0.00 0.00 3.71
247 248 8.204160 TCAATAATATTCAACACATCGTCTCCT 58.796 33.333 0.00 0.00 0.00 3.69
248 249 8.491152 CAATAATATTCAACACATCGTCTCCTC 58.509 37.037 0.00 0.00 0.00 3.71
249 250 3.961480 ATTCAACACATCGTCTCCTCA 57.039 42.857 0.00 0.00 0.00 3.86
250 251 2.724977 TCAACACATCGTCTCCTCAC 57.275 50.000 0.00 0.00 0.00 3.51
251 252 2.239400 TCAACACATCGTCTCCTCACT 58.761 47.619 0.00 0.00 0.00 3.41
252 253 2.628178 TCAACACATCGTCTCCTCACTT 59.372 45.455 0.00 0.00 0.00 3.16
253 254 3.069586 TCAACACATCGTCTCCTCACTTT 59.930 43.478 0.00 0.00 0.00 2.66
254 255 3.753294 ACACATCGTCTCCTCACTTTT 57.247 42.857 0.00 0.00 0.00 2.27
255 256 4.073293 ACACATCGTCTCCTCACTTTTT 57.927 40.909 0.00 0.00 0.00 1.94
256 257 5.209818 ACACATCGTCTCCTCACTTTTTA 57.790 39.130 0.00 0.00 0.00 1.52
257 258 4.989168 ACACATCGTCTCCTCACTTTTTAC 59.011 41.667 0.00 0.00 0.00 2.01
258 259 4.988540 CACATCGTCTCCTCACTTTTTACA 59.011 41.667 0.00 0.00 0.00 2.41
259 260 5.639506 CACATCGTCTCCTCACTTTTTACAT 59.360 40.000 0.00 0.00 0.00 2.29
260 261 5.639506 ACATCGTCTCCTCACTTTTTACATG 59.360 40.000 0.00 0.00 0.00 3.21
261 262 3.994392 TCGTCTCCTCACTTTTTACATGC 59.006 43.478 0.00 0.00 0.00 4.06
262 263 3.745975 CGTCTCCTCACTTTTTACATGCA 59.254 43.478 0.00 0.00 0.00 3.96
263 264 4.377431 CGTCTCCTCACTTTTTACATGCAC 60.377 45.833 0.00 0.00 0.00 4.57
264 265 4.757149 GTCTCCTCACTTTTTACATGCACT 59.243 41.667 0.00 0.00 0.00 4.40
265 266 5.239525 GTCTCCTCACTTTTTACATGCACTT 59.760 40.000 0.00 0.00 0.00 3.16
266 267 5.827797 TCTCCTCACTTTTTACATGCACTTT 59.172 36.000 0.00 0.00 0.00 2.66
267 268 5.830912 TCCTCACTTTTTACATGCACTTTG 58.169 37.500 0.00 0.00 0.00 2.77
268 269 5.592282 TCCTCACTTTTTACATGCACTTTGA 59.408 36.000 0.00 0.00 0.00 2.69
269 270 5.916883 CCTCACTTTTTACATGCACTTTGAG 59.083 40.000 0.00 0.00 0.00 3.02
270 271 5.830912 TCACTTTTTACATGCACTTTGAGG 58.169 37.500 0.00 0.00 0.00 3.86
271 272 5.359576 TCACTTTTTACATGCACTTTGAGGT 59.640 36.000 0.00 0.00 0.00 3.85
272 273 5.459762 CACTTTTTACATGCACTTTGAGGTG 59.540 40.000 0.00 0.00 39.91 4.00
273 274 4.582701 TTTTACATGCACTTTGAGGTGG 57.417 40.909 0.00 0.00 37.65 4.61
274 275 2.198827 TACATGCACTTTGAGGTGGG 57.801 50.000 0.00 0.00 37.65 4.61
275 276 0.540365 ACATGCACTTTGAGGTGGGG 60.540 55.000 0.00 0.00 37.65 4.96
276 277 0.540365 CATGCACTTTGAGGTGGGGT 60.540 55.000 0.00 0.00 37.65 4.95
277 278 0.540365 ATGCACTTTGAGGTGGGGTG 60.540 55.000 0.00 0.00 37.65 4.61
278 279 1.150536 GCACTTTGAGGTGGGGTGA 59.849 57.895 0.00 0.00 37.65 4.02
279 280 0.251341 GCACTTTGAGGTGGGGTGAT 60.251 55.000 0.00 0.00 37.65 3.06
280 281 1.823250 GCACTTTGAGGTGGGGTGATT 60.823 52.381 0.00 0.00 37.65 2.57
281 282 2.162681 CACTTTGAGGTGGGGTGATTC 58.837 52.381 0.00 0.00 33.95 2.52
282 283 1.780309 ACTTTGAGGTGGGGTGATTCA 59.220 47.619 0.00 0.00 0.00 2.57
283 284 2.176798 ACTTTGAGGTGGGGTGATTCAA 59.823 45.455 0.00 0.00 0.00 2.69
284 285 3.181418 ACTTTGAGGTGGGGTGATTCAAT 60.181 43.478 0.00 0.00 0.00 2.57
285 286 4.044065 ACTTTGAGGTGGGGTGATTCAATA 59.956 41.667 0.00 0.00 0.00 1.90
286 287 3.931907 TGAGGTGGGGTGATTCAATAG 57.068 47.619 0.00 0.00 0.00 1.73
287 288 2.509548 TGAGGTGGGGTGATTCAATAGG 59.490 50.000 0.00 0.00 0.00 2.57
288 289 2.777692 GAGGTGGGGTGATTCAATAGGA 59.222 50.000 0.00 0.00 0.00 2.94
289 290 2.780010 AGGTGGGGTGATTCAATAGGAG 59.220 50.000 0.00 0.00 0.00 3.69
290 291 2.777692 GGTGGGGTGATTCAATAGGAGA 59.222 50.000 0.00 0.00 0.00 3.71
291 292 3.202151 GGTGGGGTGATTCAATAGGAGAA 59.798 47.826 0.00 0.00 0.00 2.87
292 293 4.325030 GGTGGGGTGATTCAATAGGAGAAA 60.325 45.833 0.00 0.00 0.00 2.52
293 294 4.884164 GTGGGGTGATTCAATAGGAGAAAG 59.116 45.833 0.00 0.00 0.00 2.62
294 295 4.788075 TGGGGTGATTCAATAGGAGAAAGA 59.212 41.667 0.00 0.00 0.00 2.52
295 296 5.252863 TGGGGTGATTCAATAGGAGAAAGAA 59.747 40.000 0.00 0.00 0.00 2.52
296 297 6.187682 GGGGTGATTCAATAGGAGAAAGAAA 58.812 40.000 0.00 0.00 0.00 2.52
297 298 6.663523 GGGGTGATTCAATAGGAGAAAGAAAA 59.336 38.462 0.00 0.00 0.00 2.29
298 299 7.343057 GGGGTGATTCAATAGGAGAAAGAAAAT 59.657 37.037 0.00 0.00 0.00 1.82
299 300 8.193438 GGGTGATTCAATAGGAGAAAGAAAATG 58.807 37.037 0.00 0.00 0.00 2.32
300 301 8.960591 GGTGATTCAATAGGAGAAAGAAAATGA 58.039 33.333 0.00 0.00 0.00 2.57
301 302 9.780413 GTGATTCAATAGGAGAAAGAAAATGAC 57.220 33.333 0.00 0.00 0.00 3.06
302 303 9.745018 TGATTCAATAGGAGAAAGAAAATGACT 57.255 29.630 0.00 0.00 0.00 3.41
305 306 8.340618 TCAATAGGAGAAAGAAAATGACTTGG 57.659 34.615 0.00 0.00 0.00 3.61
306 307 7.394359 TCAATAGGAGAAAGAAAATGACTTGGG 59.606 37.037 0.00 0.00 0.00 4.12
307 308 5.066913 AGGAGAAAGAAAATGACTTGGGT 57.933 39.130 0.00 0.00 0.00 4.51
308 309 5.073428 AGGAGAAAGAAAATGACTTGGGTC 58.927 41.667 0.00 0.00 42.42 4.46
309 310 5.073428 GGAGAAAGAAAATGACTTGGGTCT 58.927 41.667 0.00 0.00 42.54 3.85
310 311 5.536538 GGAGAAAGAAAATGACTTGGGTCTT 59.463 40.000 0.00 0.00 42.54 3.01
311 312 6.040955 GGAGAAAGAAAATGACTTGGGTCTTT 59.959 38.462 0.00 0.00 42.54 2.52
312 313 7.043961 AGAAAGAAAATGACTTGGGTCTTTC 57.956 36.000 13.48 13.48 45.77 2.62
313 314 5.791336 AAGAAAATGACTTGGGTCTTTCC 57.209 39.130 0.00 0.00 42.54 3.13
314 315 4.803452 AGAAAATGACTTGGGTCTTTCCA 58.197 39.130 0.00 0.00 42.54 3.53
315 316 5.208121 AGAAAATGACTTGGGTCTTTCCAA 58.792 37.500 0.00 0.00 43.82 3.53
316 317 5.840693 AGAAAATGACTTGGGTCTTTCCAAT 59.159 36.000 0.00 0.00 44.79 3.16
317 318 5.473066 AAATGACTTGGGTCTTTCCAATG 57.527 39.130 0.00 0.00 44.79 2.82
318 319 3.593442 TGACTTGGGTCTTTCCAATGT 57.407 42.857 0.00 0.00 44.79 2.71
319 320 4.715534 TGACTTGGGTCTTTCCAATGTA 57.284 40.909 0.00 0.00 44.79 2.29
320 321 5.255397 TGACTTGGGTCTTTCCAATGTAT 57.745 39.130 0.00 0.00 44.79 2.29
321 322 5.640147 TGACTTGGGTCTTTCCAATGTATT 58.360 37.500 0.00 0.00 44.79 1.89
322 323 6.074648 TGACTTGGGTCTTTCCAATGTATTT 58.925 36.000 0.00 0.00 44.79 1.40
323 324 6.553100 TGACTTGGGTCTTTCCAATGTATTTT 59.447 34.615 0.00 0.00 44.79 1.82
324 325 7.070571 TGACTTGGGTCTTTCCAATGTATTTTT 59.929 33.333 0.00 0.00 44.79 1.94
345 346 4.893424 TTTACTCCGCTCCATAATTTGC 57.107 40.909 0.00 0.00 0.00 3.68
346 347 1.680338 ACTCCGCTCCATAATTTGCC 58.320 50.000 0.00 0.00 0.00 4.52
347 348 1.064758 ACTCCGCTCCATAATTTGCCA 60.065 47.619 0.00 0.00 0.00 4.92
348 349 2.233271 CTCCGCTCCATAATTTGCCAT 58.767 47.619 0.00 0.00 0.00 4.40
349 350 3.181445 ACTCCGCTCCATAATTTGCCATA 60.181 43.478 0.00 0.00 0.00 2.74
350 351 3.820467 CTCCGCTCCATAATTTGCCATAA 59.180 43.478 0.00 0.00 0.00 1.90
351 352 4.211125 TCCGCTCCATAATTTGCCATAAA 58.789 39.130 0.00 0.00 0.00 1.40
352 353 4.646945 TCCGCTCCATAATTTGCCATAAAA 59.353 37.500 0.00 0.00 0.00 1.52
353 354 5.304101 TCCGCTCCATAATTTGCCATAAAAT 59.696 36.000 0.00 0.00 0.00 1.82
354 355 5.990996 CCGCTCCATAATTTGCCATAAAATT 59.009 36.000 1.08 1.08 41.45 1.82
355 356 6.482973 CCGCTCCATAATTTGCCATAAAATTT 59.517 34.615 0.70 0.00 39.73 1.82
356 357 7.655328 CCGCTCCATAATTTGCCATAAAATTTA 59.345 33.333 0.00 0.00 39.73 1.40
357 358 9.206870 CGCTCCATAATTTGCCATAAAATTTAT 57.793 29.630 0.00 0.00 39.73 1.40
387 388 3.659850 CGTTATCGTGGATGGAGCA 57.340 52.632 0.00 0.00 0.00 4.26
388 389 1.934589 CGTTATCGTGGATGGAGCAA 58.065 50.000 0.00 0.00 0.00 3.91
389 390 1.860950 CGTTATCGTGGATGGAGCAAG 59.139 52.381 0.00 0.00 0.00 4.01
390 391 2.738643 CGTTATCGTGGATGGAGCAAGT 60.739 50.000 0.00 0.00 0.00 3.16
391 392 3.490249 CGTTATCGTGGATGGAGCAAGTA 60.490 47.826 0.00 0.00 0.00 2.24
392 393 4.632153 GTTATCGTGGATGGAGCAAGTAT 58.368 43.478 0.00 0.00 0.00 2.12
393 394 3.845781 ATCGTGGATGGAGCAAGTATT 57.154 42.857 0.00 0.00 0.00 1.89
406 407 8.713725 TGGAGCAAGTATTGGAGATGCTTCAA 62.714 42.308 4.65 0.00 46.64 2.69
442 443 8.334263 TGAAAAATACATCATGCAACTAGTGA 57.666 30.769 0.00 0.00 0.00 3.41
445 446 9.793252 AAAAATACATCATGCAACTAGTGATTC 57.207 29.630 0.00 0.00 30.57 2.52
447 448 7.959689 ATACATCATGCAACTAGTGATTCTC 57.040 36.000 0.00 0.00 30.57 2.87
464 465 1.071605 CTCCCTTGCGAGAAACGAAG 58.928 55.000 1.22 0.00 45.77 3.79
498 499 4.309950 GGTCCGTTCTGCCCACGT 62.310 66.667 0.00 0.00 35.81 4.49
499 500 2.280592 GTCCGTTCTGCCCACGTT 60.281 61.111 0.00 0.00 35.81 3.99
572 574 3.695825 ATCGTCCCCACCTCCCCT 61.696 66.667 0.00 0.00 0.00 4.79
573 575 3.698263 ATCGTCCCCACCTCCCCTC 62.698 68.421 0.00 0.00 0.00 4.30
575 577 4.026357 GTCCCCACCTCCCCTCCT 62.026 72.222 0.00 0.00 0.00 3.69
576 578 3.695825 TCCCCACCTCCCCTCCTC 61.696 72.222 0.00 0.00 0.00 3.71
596 598 1.005867 GGCCGTCCGTTACTGACAA 60.006 57.895 7.62 0.00 32.91 3.18
601 603 1.602165 CGTCCGTTACTGACAAGTGCT 60.602 52.381 7.62 0.00 37.19 4.40
602 604 2.480845 GTCCGTTACTGACAAGTGCTT 58.519 47.619 2.10 0.00 37.19 3.91
611 613 0.586802 GACAAGTGCTTCCACGTTCC 59.413 55.000 0.00 0.00 46.62 3.62
736 746 0.385390 CACCTGAACCAGCAAACACC 59.615 55.000 0.00 0.00 0.00 4.16
902 918 2.625087 GCTACCTCCCCCACTACTTGTA 60.625 54.545 0.00 0.00 0.00 2.41
922 938 0.782384 CTTCCGTTTTGTCTCGTCCG 59.218 55.000 0.00 0.00 0.00 4.79
923 939 0.385029 TTCCGTTTTGTCTCGTCCGA 59.615 50.000 0.00 0.00 0.00 4.55
924 940 0.599558 TCCGTTTTGTCTCGTCCGAT 59.400 50.000 0.00 0.00 0.00 4.18
925 941 0.989890 CCGTTTTGTCTCGTCCGATC 59.010 55.000 0.00 0.00 0.00 3.69
926 942 0.633733 CGTTTTGTCTCGTCCGATCG 59.366 55.000 8.51 8.51 0.00 3.69
927 943 1.694639 GTTTTGTCTCGTCCGATCGT 58.305 50.000 15.09 0.00 0.00 3.73
928 944 1.647702 GTTTTGTCTCGTCCGATCGTC 59.352 52.381 15.09 5.94 0.00 4.20
929 945 0.169672 TTTGTCTCGTCCGATCGTCC 59.830 55.000 15.09 2.67 0.00 4.79
999 1016 2.669569 GACGCAGAGCCAGCCAAA 60.670 61.111 0.00 0.00 0.00 3.28
1000 1017 2.670934 ACGCAGAGCCAGCCAAAG 60.671 61.111 0.00 0.00 0.00 2.77
1001 1018 4.112341 CGCAGAGCCAGCCAAAGC 62.112 66.667 0.00 0.00 40.32 3.51
1002 1019 2.987547 GCAGAGCCAGCCAAAGCA 60.988 61.111 0.00 0.00 43.56 3.91
1003 1020 2.991076 GCAGAGCCAGCCAAAGCAG 61.991 63.158 0.00 0.00 43.56 4.24
1063 1098 1.123077 TCGATGGGGAAGTGGATCAG 58.877 55.000 0.00 0.00 0.00 2.90
1073 1108 1.153549 GTGGATCAGGTCGCTGGTC 60.154 63.158 0.00 0.00 33.91 4.02
1133 1168 4.821589 CGGAAGTGGAGCCGGCTC 62.822 72.222 42.46 42.46 43.67 4.70
1315 1371 2.262637 CCTCCTGGTAAGTGGTAACCA 58.737 52.381 0.00 0.00 43.47 3.67
1316 1372 2.640826 CCTCCTGGTAAGTGGTAACCAA 59.359 50.000 0.00 0.00 44.92 3.67
1317 1373 3.265995 CCTCCTGGTAAGTGGTAACCAAT 59.734 47.826 0.00 0.00 44.92 3.16
1353 1409 2.002586 CTCCATGGTTTCGTGCTACTG 58.997 52.381 12.58 0.00 0.00 2.74
1356 1412 1.635663 ATGGTTTCGTGCTACTGCGC 61.636 55.000 0.00 0.00 45.43 6.09
1377 1433 2.724977 TTCCGATCTGATGCGATACC 57.275 50.000 0.00 0.00 0.00 2.73
1382 1442 1.269723 GATCTGATGCGATACCGGTGA 59.730 52.381 19.93 2.03 36.06 4.02
1388 1448 0.033366 TGCGATACCGGTGATGATGG 59.967 55.000 19.93 4.91 36.06 3.51
1651 1711 1.141053 GGGAAACCGAGGTGCATATCT 59.859 52.381 0.00 0.00 43.64 1.98
1809 1920 5.045651 TGGTGAATTAGAGATTGAGGCTGAA 60.046 40.000 0.00 0.00 0.00 3.02
1814 1925 1.065564 AGAGATTGAGGCTGAACTGGC 60.066 52.381 0.00 0.00 0.00 4.85
1825 1936 1.303643 GAACTGGCCCTTCCTGTGG 60.304 63.158 0.00 0.00 45.00 4.17
1903 2020 8.491152 AGAATGTAGAAATTTGATAGAATCGCG 58.509 33.333 0.00 0.00 0.00 5.87
1910 2027 4.630894 TTTGATAGAATCGCGCCATTTT 57.369 36.364 0.00 0.00 0.00 1.82
1912 2029 3.951306 TGATAGAATCGCGCCATTTTTG 58.049 40.909 0.00 0.00 0.00 2.44
1927 2044 3.749665 TTTTTGGTGGCAAGAATCTGG 57.250 42.857 0.00 0.00 0.00 3.86
1935 2052 2.309755 TGGCAAGAATCTGGTGGAGAAT 59.690 45.455 0.00 0.00 33.12 2.40
1937 2054 3.379688 GGCAAGAATCTGGTGGAGAATTC 59.620 47.826 0.00 0.00 33.12 2.17
1942 2059 4.099266 AGAATCTGGTGGAGAATTCGAGAG 59.901 45.833 0.00 0.00 33.12 3.20
1943 2060 3.087370 TCTGGTGGAGAATTCGAGAGA 57.913 47.619 0.00 0.00 39.20 3.10
1944 2061 3.636679 TCTGGTGGAGAATTCGAGAGAT 58.363 45.455 0.00 0.00 41.60 2.75
1945 2062 4.026744 TCTGGTGGAGAATTCGAGAGATT 58.973 43.478 0.00 0.00 41.60 2.40
1946 2063 4.118410 CTGGTGGAGAATTCGAGAGATTG 58.882 47.826 0.00 0.00 41.60 2.67
1947 2064 3.118629 TGGTGGAGAATTCGAGAGATTGG 60.119 47.826 0.00 0.00 41.60 3.16
1951 2068 2.103941 GAGAATTCGAGAGATTGGGGCT 59.896 50.000 0.00 0.00 41.60 5.19
1959 2076 2.123982 GATTGGGGCTCAGCTGGG 60.124 66.667 15.13 12.70 0.00 4.45
1995 2133 1.480545 GGCCCATGGGTTATGTTGTTC 59.519 52.381 31.58 10.76 37.65 3.18
2014 2154 1.902508 TCAGTCCGCTCTCTTCCATTT 59.097 47.619 0.00 0.00 0.00 2.32
2017 2157 2.093764 AGTCCGCTCTCTTCCATTTCTG 60.094 50.000 0.00 0.00 0.00 3.02
2027 2167 5.299279 TCTCTTCCATTTCTGAAAACACACC 59.701 40.000 6.95 0.00 0.00 4.16
2029 2169 2.962421 TCCATTTCTGAAAACACACCCC 59.038 45.455 6.95 0.00 0.00 4.95
2030 2170 2.965147 CCATTTCTGAAAACACACCCCT 59.035 45.455 6.95 0.00 0.00 4.79
2031 2171 3.005791 CCATTTCTGAAAACACACCCCTC 59.994 47.826 6.95 0.00 0.00 4.30
2032 2172 3.662759 TTTCTGAAAACACACCCCTCT 57.337 42.857 0.00 0.00 0.00 3.69
2033 2173 3.662759 TTCTGAAAACACACCCCTCTT 57.337 42.857 0.00 0.00 0.00 2.85
2034 2174 3.662759 TCTGAAAACACACCCCTCTTT 57.337 42.857 0.00 0.00 0.00 2.52
2035 2175 3.976015 TCTGAAAACACACCCCTCTTTT 58.024 40.909 0.00 0.00 0.00 2.27
2036 2176 4.349365 TCTGAAAACACACCCCTCTTTTT 58.651 39.130 0.00 0.00 0.00 1.94
2071 2219 6.091718 ACACACACACTTTTACAGGTTTTT 57.908 33.333 0.00 0.00 0.00 1.94
2081 2235 9.292846 CACTTTTACAGGTTTTTAAACTACACC 57.707 33.333 5.43 0.00 38.89 4.16
2082 2236 9.022884 ACTTTTACAGGTTTTTAAACTACACCA 57.977 29.630 5.43 0.00 38.89 4.17
2083 2237 9.292846 CTTTTACAGGTTTTTAAACTACACCAC 57.707 33.333 5.43 0.00 38.89 4.16
2110 2264 8.801882 AATATACAATTCCTCCAAAAGAACGA 57.198 30.769 0.00 0.00 0.00 3.85
2124 2278 8.410141 TCCAAAAGAACGACATTAGTGATTTTT 58.590 29.630 0.00 0.00 0.00 1.94
2234 2392 4.096833 CCAAATTTGATTCGAGCATGAGGA 59.903 41.667 19.86 0.00 0.00 3.71
2250 2408 2.496070 TGAGGATTGGAGATCGTTTCGT 59.504 45.455 0.00 0.00 0.00 3.85
2275 2433 6.416631 TCCAGGATGTGAATTCAGAGATAG 57.583 41.667 8.80 0.00 0.00 2.08
2365 2523 3.748568 AGCGGAAGAGTTTTGATGAAGTC 59.251 43.478 0.00 0.00 0.00 3.01
2371 2529 7.976734 CGGAAGAGTTTTGATGAAGTCTACTAT 59.023 37.037 0.00 0.00 38.13 2.12
2375 2533 9.429359 AGAGTTTTGATGAAGTCTACTATGTTG 57.571 33.333 0.00 0.00 37.50 3.33
2440 2598 8.523915 TCATGTATAATTTGAGAGGTTTGCAT 57.476 30.769 0.00 0.00 0.00 3.96
2516 2674 5.331876 ACTTCTGCCAGTATGACTAAGAC 57.668 43.478 0.00 0.00 39.69 3.01
2520 2678 5.204292 TCTGCCAGTATGACTAAGACTGAT 58.796 41.667 1.84 0.00 42.65 2.90
2523 2681 6.986250 TGCCAGTATGACTAAGACTGATATG 58.014 40.000 1.84 0.00 42.65 1.78
2535 2693 8.258708 ACTAAGACTGATATGGACAGTTAAACC 58.741 37.037 0.00 0.00 46.57 3.27
2537 2695 7.259088 AGACTGATATGGACAGTTAAACCTT 57.741 36.000 0.00 0.00 46.57 3.50
2538 2696 7.690256 AGACTGATATGGACAGTTAAACCTTT 58.310 34.615 0.00 0.00 46.57 3.11
2539 2697 8.164070 AGACTGATATGGACAGTTAAACCTTTT 58.836 33.333 0.00 0.00 46.57 2.27
2578 2736 6.899393 TGATTGGGTCCATTATAAGATTGC 57.101 37.500 0.00 0.00 0.00 3.56
2613 2780 3.127548 CACATGTACCATGCTTGTTCCTC 59.872 47.826 0.00 0.00 0.00 3.71
2642 2809 3.997021 ACGATGTTAGGTGAGAAAAGCAG 59.003 43.478 0.00 0.00 0.00 4.24
2694 2861 1.619827 AGTGATTGCCCACCATGTTTG 59.380 47.619 0.00 0.00 37.76 2.93
2726 2893 4.776349 ACACAACTTACACACAATGGAGA 58.224 39.130 0.00 0.00 0.00 3.71
2734 2901 2.909006 ACACACAATGGAGATCAGAGGT 59.091 45.455 0.00 0.00 0.00 3.85
2854 3021 2.845967 CGTCAAACTTGTTTGTGACAGC 59.154 45.455 20.99 8.71 40.32 4.40
2881 3048 2.012673 GACATTCTTAGCACTGCAGGG 58.987 52.381 19.93 16.72 0.00 4.45
3006 3173 5.894298 TTCTCACCAGGTATATGCTGAAT 57.106 39.130 0.00 0.00 0.00 2.57
3040 3207 7.466746 TTTCCTAATACGTACACACCTTACT 57.533 36.000 0.00 0.00 0.00 2.24
3046 3213 9.362539 CTAATACGTACACACCTTACTTTTGAT 57.637 33.333 0.00 0.00 0.00 2.57
3105 3280 8.970691 TTACTTTTGCTCATAATTCTTTCAGC 57.029 30.769 0.00 0.00 0.00 4.26
3108 3283 4.604843 TGCTCATAATTCTTTCAGCGTG 57.395 40.909 0.00 0.00 0.00 5.34
3228 3403 1.737236 GCACGCATATGGACTCAAACA 59.263 47.619 4.56 0.00 0.00 2.83
3377 3552 3.832492 GCGCTCTCGGCTTCCTCT 61.832 66.667 0.00 0.00 39.13 3.69
3380 3555 1.662438 CGCTCTCGGCTTCCTCTTCT 61.662 60.000 0.00 0.00 39.13 2.85
3461 3639 2.110967 CACCTTGGCATCAGAGGCG 61.111 63.158 0.00 0.00 36.77 5.52
3498 3676 4.564110 GGCCGGGGTACATGAGCC 62.564 72.222 2.18 2.04 45.83 4.70
3531 3709 0.538057 CAAAGCAAGGCTGGAGGACA 60.538 55.000 0.00 0.00 39.62 4.02
3557 3735 2.122954 AGTCGGAGAGGGCCCTTT 59.877 61.111 29.39 22.98 36.95 3.11
3617 3795 1.079543 CAGAAGGGTGGCACTCTCG 60.080 63.158 22.43 8.84 0.00 4.04
3647 3825 4.373116 GAGAGCAACGCGGGGTCA 62.373 66.667 26.37 0.00 35.30 4.02
3695 3873 1.889545 ACAGCTTGTCTCTGAAAGGC 58.110 50.000 0.00 0.00 35.61 4.35
3697 3875 1.063183 AGCTTGTCTCTGAAAGGCCT 58.937 50.000 0.00 0.00 0.00 5.19
3839 4116 2.278094 GCTGTAGCGTTATGTGTACACG 59.722 50.000 20.61 9.79 36.98 4.49
3869 4146 2.548057 GTCAAGTTCAACGCCTCATTGA 59.452 45.455 0.00 0.00 34.27 2.57
3905 4182 8.544687 AATAATTAGTACTCCCTCCGTAAACT 57.455 34.615 0.00 0.00 0.00 2.66
3910 4187 9.819754 ATTAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
3915 4192 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3917 4194 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3918 4195 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3919 4196 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3920 4197 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3921 4198 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3922 4199 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3923 4200 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4025 4314 5.899120 GAAAAGATTCCCCAACTTAGACC 57.101 43.478 0.00 0.00 0.00 3.85
4029 4318 4.439860 AGATTCCCCAACTTAGACCTCTT 58.560 43.478 0.00 0.00 0.00 2.85
4030 4319 4.852697 AGATTCCCCAACTTAGACCTCTTT 59.147 41.667 0.00 0.00 0.00 2.52
4071 4361 7.656707 TCTAATTCCGTTTTGTACCTTGTAC 57.343 36.000 0.00 0.00 0.00 2.90
4072 4362 7.444299 TCTAATTCCGTTTTGTACCTTGTACT 58.556 34.615 6.02 0.00 0.00 2.73
4073 4363 5.934935 ATTCCGTTTTGTACCTTGTACTG 57.065 39.130 6.02 0.00 0.00 2.74
4074 4364 4.405116 TCCGTTTTGTACCTTGTACTGT 57.595 40.909 6.02 0.00 0.00 3.55
4075 4365 5.528043 TCCGTTTTGTACCTTGTACTGTA 57.472 39.130 6.02 0.00 0.00 2.74
4076 4366 5.288804 TCCGTTTTGTACCTTGTACTGTAC 58.711 41.667 10.98 10.98 38.22 2.90
4077 4367 5.049167 CCGTTTTGTACCTTGTACTGTACA 58.951 41.667 16.26 16.26 44.01 2.90
4095 4398 4.466370 TGTACATCTGTTTGTCCCTCTAGG 59.534 45.833 0.00 0.00 0.00 3.02
4096 4399 2.237392 ACATCTGTTTGTCCCTCTAGGC 59.763 50.000 0.00 0.00 34.51 3.93
4097 4400 2.327325 TCTGTTTGTCCCTCTAGGCT 57.673 50.000 0.00 0.00 34.51 4.58
4099 4402 2.183679 CTGTTTGTCCCTCTAGGCTCT 58.816 52.381 0.00 0.00 34.51 4.09
4100 4403 3.011369 TCTGTTTGTCCCTCTAGGCTCTA 59.989 47.826 0.00 0.00 34.51 2.43
4104 4407 2.419686 TGTCCCTCTAGGCTCTAGCTA 58.580 52.381 1.39 0.00 41.70 3.32
4105 4408 2.106857 TGTCCCTCTAGGCTCTAGCTAC 59.893 54.545 1.39 0.00 41.70 3.58
4106 4409 1.706305 TCCCTCTAGGCTCTAGCTACC 59.294 57.143 1.39 0.00 41.70 3.18
4108 4411 2.554344 CCCTCTAGGCTCTAGCTACCTG 60.554 59.091 10.86 2.96 41.70 4.00
4110 4413 1.202952 TCTAGGCTCTAGCTACCTGCC 60.203 57.143 15.34 15.34 44.23 4.85
4111 4414 2.731374 GGCTCTAGCTACCTGCCG 59.269 66.667 10.07 0.00 44.23 5.69
4112 4415 2.128507 GGCTCTAGCTACCTGCCGT 61.129 63.158 10.07 0.00 44.23 5.68
4113 4416 0.822532 GGCTCTAGCTACCTGCCGTA 60.823 60.000 10.07 0.00 44.23 4.02
4114 4417 1.030457 GCTCTAGCTACCTGCCGTAA 58.970 55.000 0.00 0.00 44.23 3.18
4115 4418 1.407979 GCTCTAGCTACCTGCCGTAAA 59.592 52.381 0.00 0.00 44.23 2.01
4116 4419 2.159142 GCTCTAGCTACCTGCCGTAAAA 60.159 50.000 0.00 0.00 44.23 1.52
4117 4420 3.707793 CTCTAGCTACCTGCCGTAAAAG 58.292 50.000 0.00 0.00 44.23 2.27
4120 4423 3.967332 AGCTACCTGCCGTAAAAGTTA 57.033 42.857 0.00 0.00 44.23 2.24
4121 4424 3.858247 AGCTACCTGCCGTAAAAGTTAG 58.142 45.455 0.00 0.00 44.23 2.34
4127 4545 4.007659 CCTGCCGTAAAAGTTAGAATGGT 58.992 43.478 0.00 0.00 0.00 3.55
4161 4579 1.155042 GGAGACAGTTGCTTGAGCTG 58.845 55.000 4.44 0.00 42.66 4.24
4187 4605 4.339814 TGGCTAAATTTCGTGTTTTGACCT 59.660 37.500 0.00 0.00 0.00 3.85
4197 4622 3.061271 CGTGTTTTGACCTTTTTCGCATG 60.061 43.478 0.00 0.00 0.00 4.06
4244 4669 5.560724 TGAAAAGAATTTCGGGATCTGACT 58.439 37.500 0.00 0.00 46.47 3.41
4344 4769 1.021968 GGAACGACAACTGTTTGCCT 58.978 50.000 0.00 0.00 36.00 4.75
4408 4833 0.630134 AGCCTCTCTAACCCTACCGT 59.370 55.000 0.00 0.00 0.00 4.83
4483 4909 6.408035 TGTAACAAAATATCGAAGTGCCCTA 58.592 36.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.072823 CGTCTGTGTTTCGTGTGATAATTG 58.927 41.667 0.00 0.00 0.00 2.32
3 4 3.678072 CCGTCTGTGTTTCGTGTGATAAT 59.322 43.478 0.00 0.00 0.00 1.28
4 5 3.054166 CCGTCTGTGTTTCGTGTGATAA 58.946 45.455 0.00 0.00 0.00 1.75
5 6 2.668250 CCGTCTGTGTTTCGTGTGATA 58.332 47.619 0.00 0.00 0.00 2.15
6 7 1.497991 CCGTCTGTGTTTCGTGTGAT 58.502 50.000 0.00 0.00 0.00 3.06
7 8 1.149361 GCCGTCTGTGTTTCGTGTGA 61.149 55.000 0.00 0.00 0.00 3.58
9 10 0.741574 TTGCCGTCTGTGTTTCGTGT 60.742 50.000 0.00 0.00 0.00 4.49
10 11 0.586319 ATTGCCGTCTGTGTTTCGTG 59.414 50.000 0.00 0.00 0.00 4.35
11 12 0.586319 CATTGCCGTCTGTGTTTCGT 59.414 50.000 0.00 0.00 0.00 3.85
12 13 0.725784 GCATTGCCGTCTGTGTTTCG 60.726 55.000 0.00 0.00 0.00 3.46
13 14 0.387239 GGCATTGCCGTCTGTGTTTC 60.387 55.000 12.82 0.00 39.62 2.78
14 15 1.659794 GGCATTGCCGTCTGTGTTT 59.340 52.632 12.82 0.00 39.62 2.83
15 16 3.354678 GGCATTGCCGTCTGTGTT 58.645 55.556 12.82 0.00 39.62 3.32
25 26 3.156293 TGTATGGTGGATATGGCATTGC 58.844 45.455 4.78 0.00 0.00 3.56
26 27 4.321452 GCTTGTATGGTGGATATGGCATTG 60.321 45.833 4.78 0.00 0.00 2.82
27 28 3.828451 GCTTGTATGGTGGATATGGCATT 59.172 43.478 4.78 0.00 0.00 3.56
28 29 3.424703 GCTTGTATGGTGGATATGGCAT 58.575 45.455 4.88 4.88 0.00 4.40
29 30 2.488891 GGCTTGTATGGTGGATATGGCA 60.489 50.000 0.00 0.00 0.00 4.92
30 31 2.162681 GGCTTGTATGGTGGATATGGC 58.837 52.381 0.00 0.00 0.00 4.40
31 32 2.108075 TGGGCTTGTATGGTGGATATGG 59.892 50.000 0.00 0.00 0.00 2.74
32 33 3.507162 TGGGCTTGTATGGTGGATATG 57.493 47.619 0.00 0.00 0.00 1.78
33 34 3.181429 CCTTGGGCTTGTATGGTGGATAT 60.181 47.826 0.00 0.00 0.00 1.63
34 35 2.174639 CCTTGGGCTTGTATGGTGGATA 59.825 50.000 0.00 0.00 0.00 2.59
35 36 1.063717 CCTTGGGCTTGTATGGTGGAT 60.064 52.381 0.00 0.00 0.00 3.41
36 37 0.331278 CCTTGGGCTTGTATGGTGGA 59.669 55.000 0.00 0.00 0.00 4.02
37 38 1.322538 GCCTTGGGCTTGTATGGTGG 61.323 60.000 0.80 0.00 46.69 4.61
38 39 2.192605 GCCTTGGGCTTGTATGGTG 58.807 57.895 0.80 0.00 46.69 4.17
39 40 4.764143 GCCTTGGGCTTGTATGGT 57.236 55.556 0.80 0.00 46.69 3.55
56 57 1.242076 AGCTGCTGGTGCTGTTTTAG 58.758 50.000 0.00 0.00 39.56 1.85
57 58 3.419793 AGCTGCTGGTGCTGTTTTA 57.580 47.368 0.00 0.00 39.56 1.52
58 59 4.265206 AGCTGCTGGTGCTGTTTT 57.735 50.000 0.00 0.00 39.56 2.43
68 69 2.543012 CGATGACTTAATCCAGCTGCTG 59.457 50.000 22.44 22.44 0.00 4.41
69 70 2.831333 CGATGACTTAATCCAGCTGCT 58.169 47.619 8.66 0.00 0.00 4.24
70 71 1.262683 GCGATGACTTAATCCAGCTGC 59.737 52.381 8.66 0.00 0.00 5.25
71 72 1.869767 GGCGATGACTTAATCCAGCTG 59.130 52.381 6.78 6.78 0.00 4.24
72 73 1.202698 GGGCGATGACTTAATCCAGCT 60.203 52.381 0.00 0.00 0.00 4.24
73 74 1.230324 GGGCGATGACTTAATCCAGC 58.770 55.000 0.00 0.00 0.00 4.85
74 75 2.620251 TGGGCGATGACTTAATCCAG 57.380 50.000 0.00 0.00 0.00 3.86
75 76 2.917933 CTTGGGCGATGACTTAATCCA 58.082 47.619 0.00 0.00 0.00 3.41
76 77 1.604278 GCTTGGGCGATGACTTAATCC 59.396 52.381 0.00 0.00 0.00 3.01
89 90 3.793144 CTCAACGAGCGCTTGGGC 61.793 66.667 27.88 6.69 0.00 5.36
90 91 3.793144 GCTCAACGAGCGCTTGGG 61.793 66.667 27.88 16.12 45.85 4.12
98 99 1.148310 ACGACATTTGGCTCAACGAG 58.852 50.000 0.00 0.00 0.00 4.18
99 100 2.442212 TACGACATTTGGCTCAACGA 57.558 45.000 0.00 0.00 0.00 3.85
100 101 2.787723 GCATACGACATTTGGCTCAACG 60.788 50.000 0.00 0.00 0.00 4.10
101 102 2.785679 GCATACGACATTTGGCTCAAC 58.214 47.619 0.00 0.00 0.00 3.18
102 103 1.396648 CGCATACGACATTTGGCTCAA 59.603 47.619 0.00 0.00 43.93 3.02
103 104 1.006086 CGCATACGACATTTGGCTCA 58.994 50.000 0.00 0.00 43.93 4.26
104 105 1.286501 TCGCATACGACATTTGGCTC 58.713 50.000 0.00 0.00 45.12 4.70
105 106 3.451793 TCGCATACGACATTTGGCT 57.548 47.368 0.00 0.00 45.12 4.75
151 152 9.289782 GCACTGGGAAAATAGATGTATAGATTT 57.710 33.333 0.00 0.00 0.00 2.17
152 153 8.439971 TGCACTGGGAAAATAGATGTATAGATT 58.560 33.333 0.00 0.00 0.00 2.40
153 154 7.880195 GTGCACTGGGAAAATAGATGTATAGAT 59.120 37.037 10.32 0.00 0.00 1.98
154 155 7.071196 AGTGCACTGGGAAAATAGATGTATAGA 59.929 37.037 20.97 0.00 0.00 1.98
155 156 7.220030 AGTGCACTGGGAAAATAGATGTATAG 58.780 38.462 20.97 0.00 0.00 1.31
156 157 7.136822 AGTGCACTGGGAAAATAGATGTATA 57.863 36.000 20.97 0.00 0.00 1.47
157 158 6.006275 AGTGCACTGGGAAAATAGATGTAT 57.994 37.500 20.97 0.00 0.00 2.29
158 159 5.435686 AGTGCACTGGGAAAATAGATGTA 57.564 39.130 20.97 0.00 0.00 2.29
159 160 4.307032 AGTGCACTGGGAAAATAGATGT 57.693 40.909 20.97 0.00 0.00 3.06
160 161 5.649782 AAAGTGCACTGGGAAAATAGATG 57.350 39.130 22.49 0.00 0.00 2.90
161 162 7.775053 TTTAAAGTGCACTGGGAAAATAGAT 57.225 32.000 22.49 0.00 0.00 1.98
162 163 7.589958 TTTTAAAGTGCACTGGGAAAATAGA 57.410 32.000 22.49 3.60 0.00 1.98
163 164 9.573133 CTATTTTAAAGTGCACTGGGAAAATAG 57.427 33.333 33.92 33.92 36.97 1.73
164 165 9.303116 TCTATTTTAAAGTGCACTGGGAAAATA 57.697 29.630 29.33 29.33 31.09 1.40
165 166 8.189119 TCTATTTTAAAGTGCACTGGGAAAAT 57.811 30.769 29.89 29.89 32.24 1.82
166 167 7.589958 TCTATTTTAAAGTGCACTGGGAAAA 57.410 32.000 22.49 23.80 0.00 2.29
167 168 7.589958 TTCTATTTTAAAGTGCACTGGGAAA 57.410 32.000 22.49 19.79 0.00 3.13
168 169 7.589958 TTTCTATTTTAAAGTGCACTGGGAA 57.410 32.000 22.49 12.02 0.00 3.97
169 170 7.589958 TTTTCTATTTTAAAGTGCACTGGGA 57.410 32.000 22.49 5.76 0.00 4.37
194 195 9.226606 TCTTGATTACCGTGTGATAAGATTTTT 57.773 29.630 0.00 0.00 0.00 1.94
195 196 8.786826 TCTTGATTACCGTGTGATAAGATTTT 57.213 30.769 0.00 0.00 0.00 1.82
196 197 8.964476 ATCTTGATTACCGTGTGATAAGATTT 57.036 30.769 0.00 0.00 31.63 2.17
197 198 8.204160 TGATCTTGATTACCGTGTGATAAGATT 58.796 33.333 0.00 0.00 34.74 2.40
198 199 7.726216 TGATCTTGATTACCGTGTGATAAGAT 58.274 34.615 0.00 0.00 36.62 2.40
199 200 7.107639 TGATCTTGATTACCGTGTGATAAGA 57.892 36.000 0.00 0.00 0.00 2.10
200 201 7.770801 TTGATCTTGATTACCGTGTGATAAG 57.229 36.000 0.00 0.00 0.00 1.73
201 202 9.825109 TTATTGATCTTGATTACCGTGTGATAA 57.175 29.630 0.00 0.00 0.00 1.75
202 203 9.996554 ATTATTGATCTTGATTACCGTGTGATA 57.003 29.630 0.00 0.00 0.00 2.15
203 204 8.908786 ATTATTGATCTTGATTACCGTGTGAT 57.091 30.769 0.00 0.00 0.00 3.06
204 205 9.996554 ATATTATTGATCTTGATTACCGTGTGA 57.003 29.630 0.00 0.00 0.00 3.58
218 219 9.770097 AGACGATGTGTTGAATATTATTGATCT 57.230 29.630 0.00 0.00 0.00 2.75
220 221 8.993121 GGAGACGATGTGTTGAATATTATTGAT 58.007 33.333 0.00 0.00 0.00 2.57
221 222 8.204160 AGGAGACGATGTGTTGAATATTATTGA 58.796 33.333 0.00 0.00 0.00 2.57
222 223 8.370493 AGGAGACGATGTGTTGAATATTATTG 57.630 34.615 0.00 0.00 0.00 1.90
223 224 8.204160 TGAGGAGACGATGTGTTGAATATTATT 58.796 33.333 0.00 0.00 0.00 1.40
224 225 7.653713 GTGAGGAGACGATGTGTTGAATATTAT 59.346 37.037 0.00 0.00 0.00 1.28
225 226 6.978659 GTGAGGAGACGATGTGTTGAATATTA 59.021 38.462 0.00 0.00 0.00 0.98
226 227 5.812642 GTGAGGAGACGATGTGTTGAATATT 59.187 40.000 0.00 0.00 0.00 1.28
227 228 5.127845 AGTGAGGAGACGATGTGTTGAATAT 59.872 40.000 0.00 0.00 0.00 1.28
228 229 4.462834 AGTGAGGAGACGATGTGTTGAATA 59.537 41.667 0.00 0.00 0.00 1.75
229 230 3.259374 AGTGAGGAGACGATGTGTTGAAT 59.741 43.478 0.00 0.00 0.00 2.57
230 231 2.628178 AGTGAGGAGACGATGTGTTGAA 59.372 45.455 0.00 0.00 0.00 2.69
231 232 2.239400 AGTGAGGAGACGATGTGTTGA 58.761 47.619 0.00 0.00 0.00 3.18
232 233 2.732412 AGTGAGGAGACGATGTGTTG 57.268 50.000 0.00 0.00 0.00 3.33
233 234 3.753294 AAAGTGAGGAGACGATGTGTT 57.247 42.857 0.00 0.00 0.00 3.32
234 235 3.753294 AAAAGTGAGGAGACGATGTGT 57.247 42.857 0.00 0.00 0.00 3.72
235 236 4.988540 TGTAAAAAGTGAGGAGACGATGTG 59.011 41.667 0.00 0.00 0.00 3.21
236 237 5.209818 TGTAAAAAGTGAGGAGACGATGT 57.790 39.130 0.00 0.00 0.00 3.06
237 238 5.446473 GCATGTAAAAAGTGAGGAGACGATG 60.446 44.000 0.00 0.00 0.00 3.84
238 239 4.631813 GCATGTAAAAAGTGAGGAGACGAT 59.368 41.667 0.00 0.00 0.00 3.73
239 240 3.994392 GCATGTAAAAAGTGAGGAGACGA 59.006 43.478 0.00 0.00 0.00 4.20
240 241 3.745975 TGCATGTAAAAAGTGAGGAGACG 59.254 43.478 0.00 0.00 0.00 4.18
241 242 4.757149 AGTGCATGTAAAAAGTGAGGAGAC 59.243 41.667 0.00 0.00 0.00 3.36
242 243 4.973168 AGTGCATGTAAAAAGTGAGGAGA 58.027 39.130 0.00 0.00 0.00 3.71
243 244 5.695851 AAGTGCATGTAAAAAGTGAGGAG 57.304 39.130 0.00 0.00 0.00 3.69
244 245 5.592282 TCAAAGTGCATGTAAAAAGTGAGGA 59.408 36.000 0.00 0.00 0.00 3.71
245 246 5.830912 TCAAAGTGCATGTAAAAAGTGAGG 58.169 37.500 0.00 0.00 0.00 3.86
246 247 5.916883 CCTCAAAGTGCATGTAAAAAGTGAG 59.083 40.000 0.00 0.04 0.00 3.51
247 248 5.359576 ACCTCAAAGTGCATGTAAAAAGTGA 59.640 36.000 0.00 0.00 0.00 3.41
248 249 5.459762 CACCTCAAAGTGCATGTAAAAAGTG 59.540 40.000 0.00 0.00 0.00 3.16
249 250 5.451798 CCACCTCAAAGTGCATGTAAAAAGT 60.452 40.000 0.00 0.00 36.38 2.66
250 251 4.984161 CCACCTCAAAGTGCATGTAAAAAG 59.016 41.667 0.00 0.00 36.38 2.27
251 252 4.202202 CCCACCTCAAAGTGCATGTAAAAA 60.202 41.667 0.00 0.00 36.38 1.94
252 253 3.320541 CCCACCTCAAAGTGCATGTAAAA 59.679 43.478 0.00 0.00 36.38 1.52
253 254 2.890311 CCCACCTCAAAGTGCATGTAAA 59.110 45.455 0.00 0.00 36.38 2.01
254 255 2.513753 CCCACCTCAAAGTGCATGTAA 58.486 47.619 0.00 0.00 36.38 2.41
255 256 1.271871 CCCCACCTCAAAGTGCATGTA 60.272 52.381 0.00 0.00 36.38 2.29
256 257 0.540365 CCCCACCTCAAAGTGCATGT 60.540 55.000 0.00 0.00 36.38 3.21
257 258 0.540365 ACCCCACCTCAAAGTGCATG 60.540 55.000 0.00 0.00 36.38 4.06
258 259 0.540365 CACCCCACCTCAAAGTGCAT 60.540 55.000 0.00 0.00 36.38 3.96
259 260 1.152777 CACCCCACCTCAAAGTGCA 60.153 57.895 0.00 0.00 36.38 4.57
260 261 0.251341 ATCACCCCACCTCAAAGTGC 60.251 55.000 0.00 0.00 36.38 4.40
261 262 2.162681 GAATCACCCCACCTCAAAGTG 58.837 52.381 0.00 0.00 37.51 3.16
262 263 1.780309 TGAATCACCCCACCTCAAAGT 59.220 47.619 0.00 0.00 0.00 2.66
263 264 2.584835 TGAATCACCCCACCTCAAAG 57.415 50.000 0.00 0.00 0.00 2.77
264 265 3.541242 ATTGAATCACCCCACCTCAAA 57.459 42.857 0.00 0.00 30.37 2.69
265 266 3.053693 CCTATTGAATCACCCCACCTCAA 60.054 47.826 0.00 0.00 0.00 3.02
266 267 2.509548 CCTATTGAATCACCCCACCTCA 59.490 50.000 0.00 0.00 0.00 3.86
267 268 2.777692 TCCTATTGAATCACCCCACCTC 59.222 50.000 0.00 0.00 0.00 3.85
268 269 2.780010 CTCCTATTGAATCACCCCACCT 59.220 50.000 0.00 0.00 0.00 4.00
269 270 2.777692 TCTCCTATTGAATCACCCCACC 59.222 50.000 0.00 0.00 0.00 4.61
270 271 4.503714 TTCTCCTATTGAATCACCCCAC 57.496 45.455 0.00 0.00 0.00 4.61
271 272 4.788075 TCTTTCTCCTATTGAATCACCCCA 59.212 41.667 0.00 0.00 0.00 4.96
272 273 5.373812 TCTTTCTCCTATTGAATCACCCC 57.626 43.478 0.00 0.00 0.00 4.95
273 274 7.703058 TTTTCTTTCTCCTATTGAATCACCC 57.297 36.000 0.00 0.00 0.00 4.61
274 275 8.960591 TCATTTTCTTTCTCCTATTGAATCACC 58.039 33.333 0.00 0.00 0.00 4.02
275 276 9.780413 GTCATTTTCTTTCTCCTATTGAATCAC 57.220 33.333 0.00 0.00 0.00 3.06
276 277 9.745018 AGTCATTTTCTTTCTCCTATTGAATCA 57.255 29.630 0.00 0.00 0.00 2.57
279 280 8.796475 CCAAGTCATTTTCTTTCTCCTATTGAA 58.204 33.333 0.00 0.00 0.00 2.69
280 281 7.394359 CCCAAGTCATTTTCTTTCTCCTATTGA 59.606 37.037 0.00 0.00 0.00 2.57
281 282 7.177392 ACCCAAGTCATTTTCTTTCTCCTATTG 59.823 37.037 0.00 0.00 0.00 1.90
282 283 7.241628 ACCCAAGTCATTTTCTTTCTCCTATT 58.758 34.615 0.00 0.00 0.00 1.73
283 284 6.794534 ACCCAAGTCATTTTCTTTCTCCTAT 58.205 36.000 0.00 0.00 0.00 2.57
284 285 6.044404 AGACCCAAGTCATTTTCTTTCTCCTA 59.956 38.462 0.00 0.00 46.15 2.94
285 286 5.066913 ACCCAAGTCATTTTCTTTCTCCT 57.933 39.130 0.00 0.00 0.00 3.69
286 287 5.073428 AGACCCAAGTCATTTTCTTTCTCC 58.927 41.667 0.00 0.00 46.15 3.71
287 288 6.641169 AAGACCCAAGTCATTTTCTTTCTC 57.359 37.500 0.00 0.00 46.15 2.87
288 289 6.040955 GGAAAGACCCAAGTCATTTTCTTTCT 59.959 38.462 17.06 0.00 46.15 2.52
289 290 6.183360 TGGAAAGACCCAAGTCATTTTCTTTC 60.183 38.462 11.67 11.67 46.15 2.62
290 291 5.660864 TGGAAAGACCCAAGTCATTTTCTTT 59.339 36.000 0.00 0.00 46.15 2.52
291 292 5.208121 TGGAAAGACCCAAGTCATTTTCTT 58.792 37.500 7.45 0.00 46.15 2.52
292 293 4.803452 TGGAAAGACCCAAGTCATTTTCT 58.197 39.130 7.45 0.00 46.15 2.52
293 294 5.529581 TTGGAAAGACCCAAGTCATTTTC 57.470 39.130 0.00 0.00 46.15 2.29
322 323 5.393678 GGCAAATTATGGAGCGGAGTAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
323 324 4.097286 GGCAAATTATGGAGCGGAGTAAAA 59.903 41.667 0.00 0.00 0.00 1.52
324 325 3.630312 GGCAAATTATGGAGCGGAGTAAA 59.370 43.478 0.00 0.00 0.00 2.01
325 326 3.211045 GGCAAATTATGGAGCGGAGTAA 58.789 45.455 0.00 0.00 0.00 2.24
326 327 2.171659 TGGCAAATTATGGAGCGGAGTA 59.828 45.455 0.00 0.00 0.00 2.59
327 328 1.064758 TGGCAAATTATGGAGCGGAGT 60.065 47.619 0.00 0.00 0.00 3.85
328 329 1.679139 TGGCAAATTATGGAGCGGAG 58.321 50.000 0.00 0.00 0.00 4.63
329 330 2.363306 ATGGCAAATTATGGAGCGGA 57.637 45.000 0.00 0.00 0.00 5.54
330 331 4.582701 TTTATGGCAAATTATGGAGCGG 57.417 40.909 0.00 0.00 0.00 5.52
331 332 7.481275 AAATTTTATGGCAAATTATGGAGCG 57.519 32.000 0.00 0.00 35.67 5.03
369 370 1.860950 CTTGCTCCATCCACGATAACG 59.139 52.381 0.00 0.00 45.75 3.18
370 371 2.906354 ACTTGCTCCATCCACGATAAC 58.094 47.619 0.00 0.00 0.00 1.89
371 372 4.955811 ATACTTGCTCCATCCACGATAA 57.044 40.909 0.00 0.00 0.00 1.75
372 373 4.503123 CCAATACTTGCTCCATCCACGATA 60.503 45.833 0.00 0.00 0.00 2.92
373 374 3.470709 CAATACTTGCTCCATCCACGAT 58.529 45.455 0.00 0.00 0.00 3.73
374 375 2.419990 CCAATACTTGCTCCATCCACGA 60.420 50.000 0.00 0.00 0.00 4.35
375 376 1.942657 CCAATACTTGCTCCATCCACG 59.057 52.381 0.00 0.00 0.00 4.94
376 377 3.118261 TCTCCAATACTTGCTCCATCCAC 60.118 47.826 0.00 0.00 0.00 4.02
377 378 3.114606 TCTCCAATACTTGCTCCATCCA 58.885 45.455 0.00 0.00 0.00 3.41
378 379 3.845781 TCTCCAATACTTGCTCCATCC 57.154 47.619 0.00 0.00 0.00 3.51
379 380 3.501445 GCATCTCCAATACTTGCTCCATC 59.499 47.826 0.00 0.00 0.00 3.51
380 381 3.137913 AGCATCTCCAATACTTGCTCCAT 59.862 43.478 0.00 0.00 39.32 3.41
381 382 2.507058 AGCATCTCCAATACTTGCTCCA 59.493 45.455 0.00 0.00 39.32 3.86
382 383 3.205784 AGCATCTCCAATACTTGCTCC 57.794 47.619 0.00 0.00 39.32 4.70
383 384 4.194640 TGAAGCATCTCCAATACTTGCTC 58.805 43.478 0.00 0.00 42.50 4.26
384 385 4.226427 TGAAGCATCTCCAATACTTGCT 57.774 40.909 0.00 0.00 45.06 3.91
385 386 4.970662 TTGAAGCATCTCCAATACTTGC 57.029 40.909 0.00 0.00 0.00 4.01
416 417 8.959548 TCACTAGTTGCATGATGTATTTTTCAT 58.040 29.630 0.00 0.00 32.87 2.57
417 418 8.334263 TCACTAGTTGCATGATGTATTTTTCA 57.666 30.769 0.00 0.00 0.00 2.69
418 419 9.793252 AATCACTAGTTGCATGATGTATTTTTC 57.207 29.630 0.00 0.00 33.37 2.29
419 420 9.793252 GAATCACTAGTTGCATGATGTATTTTT 57.207 29.630 0.00 0.00 33.37 1.94
420 421 9.182214 AGAATCACTAGTTGCATGATGTATTTT 57.818 29.630 0.00 0.00 33.37 1.82
421 422 8.743085 AGAATCACTAGTTGCATGATGTATTT 57.257 30.769 0.00 0.00 33.37 1.40
422 423 7.443575 GGAGAATCACTAGTTGCATGATGTATT 59.556 37.037 0.00 0.00 36.25 1.89
423 424 6.933521 GGAGAATCACTAGTTGCATGATGTAT 59.066 38.462 0.00 0.00 36.25 2.29
424 425 6.283694 GGAGAATCACTAGTTGCATGATGTA 58.716 40.000 0.00 0.00 36.25 2.29
425 426 5.121811 GGAGAATCACTAGTTGCATGATGT 58.878 41.667 0.00 0.00 36.25 3.06
426 427 4.514441 GGGAGAATCACTAGTTGCATGATG 59.486 45.833 0.00 0.00 33.91 3.07
427 428 4.712476 GGGAGAATCACTAGTTGCATGAT 58.288 43.478 0.00 0.00 33.91 2.45
428 429 4.142609 GGGAGAATCACTAGTTGCATGA 57.857 45.455 0.00 0.00 33.91 3.07
447 448 1.497722 GCTTCGTTTCTCGCAAGGG 59.502 57.895 0.00 0.00 39.67 3.95
477 478 3.056328 GGGCAGAACGGACCTTGC 61.056 66.667 0.00 0.00 31.16 4.01
561 563 2.366167 CTGAGGAGGGGAGGTGGG 60.366 72.222 0.00 0.00 0.00 4.61
572 574 2.036098 TAACGGACGGCCTGAGGA 59.964 61.111 5.33 0.00 0.00 3.71
573 575 2.183555 GTAACGGACGGCCTGAGG 59.816 66.667 5.33 0.00 0.00 3.86
574 576 1.153823 CAGTAACGGACGGCCTGAG 60.154 63.158 5.33 0.00 0.00 3.35
575 577 1.604308 TCAGTAACGGACGGCCTGA 60.604 57.895 5.33 0.00 0.00 3.86
576 578 1.445582 GTCAGTAACGGACGGCCTG 60.446 63.158 5.33 0.55 0.00 4.85
596 598 2.430367 GGGGAACGTGGAAGCACT 59.570 61.111 0.00 0.00 0.00 4.40
943 959 1.154263 GAGTGACGACCGACGAAGG 60.154 63.158 0.00 0.00 45.77 3.46
980 997 3.889134 TTGGCTGGCTCTGCGTCTG 62.889 63.158 2.00 0.00 0.00 3.51
981 998 3.182590 TTTGGCTGGCTCTGCGTCT 62.183 57.895 2.00 0.00 0.00 4.18
982 999 2.669569 TTTGGCTGGCTCTGCGTC 60.670 61.111 2.00 0.00 0.00 5.19
983 1000 2.670934 CTTTGGCTGGCTCTGCGT 60.671 61.111 2.00 0.00 0.00 5.24
1109 1144 2.757077 CTCCACTTCCGGCCCTTT 59.243 61.111 0.00 0.00 0.00 3.11
1315 1371 1.137404 GCAATCTGCGCGTTGGATT 59.863 52.632 8.43 12.20 31.71 3.01
1316 1372 2.793946 GCAATCTGCGCGTTGGAT 59.206 55.556 8.43 6.38 31.71 3.41
1353 1409 1.206072 GCATCAGATCGGAATGCGC 59.794 57.895 0.00 0.00 0.00 6.09
1356 1412 2.926200 GGTATCGCATCAGATCGGAATG 59.074 50.000 0.00 0.38 32.39 2.67
1377 1433 2.896745 TCATCAGTCCATCATCACCG 57.103 50.000 0.00 0.00 0.00 4.94
1382 1442 3.554544 GCGACAGATCATCAGTCCATCAT 60.555 47.826 4.69 0.00 30.25 2.45
1388 1448 1.535636 CGCGCGACAGATCATCAGTC 61.536 60.000 28.94 0.00 30.67 3.51
1657 1717 2.789491 TGCAAACGCACATTCAATCA 57.211 40.000 0.00 0.00 33.43 2.57
1809 1920 0.550147 ATACCACAGGAAGGGCCAGT 60.550 55.000 6.18 0.00 40.02 4.00
1814 1925 1.227383 GCCCATACCACAGGAAGGG 59.773 63.158 0.00 0.00 35.73 3.95
1825 1936 2.808906 AAGAAACTGGAGGCCCATAC 57.191 50.000 0.00 0.00 42.59 2.39
1910 2027 1.619654 CACCAGATTCTTGCCACCAA 58.380 50.000 0.00 0.00 0.00 3.67
1912 2029 0.038166 TCCACCAGATTCTTGCCACC 59.962 55.000 0.00 0.00 0.00 4.61
1918 2035 4.467795 TCTCGAATTCTCCACCAGATTCTT 59.532 41.667 3.52 0.00 0.00 2.52
1920 2037 4.098654 TCTCTCGAATTCTCCACCAGATTC 59.901 45.833 3.52 0.00 0.00 2.52
1923 2040 3.087370 TCTCTCGAATTCTCCACCAGA 57.913 47.619 3.52 0.00 0.00 3.86
1924 2041 4.118410 CAATCTCTCGAATTCTCCACCAG 58.882 47.826 3.52 0.00 0.00 4.00
1927 2044 3.462021 CCCAATCTCTCGAATTCTCCAC 58.538 50.000 3.52 0.00 0.00 4.02
1935 2052 0.826715 CTGAGCCCCAATCTCTCGAA 59.173 55.000 0.00 0.00 0.00 3.71
1937 2054 1.227497 GCTGAGCCCCAATCTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
1942 2059 2.123982 CCCAGCTGAGCCCCAATC 60.124 66.667 17.39 0.00 0.00 2.67
1943 2060 4.453892 GCCCAGCTGAGCCCCAAT 62.454 66.667 17.39 0.00 0.00 3.16
1959 2076 1.581447 GCCAGTGTTACAGCAAGGC 59.419 57.895 2.46 2.46 35.62 4.35
1995 2133 2.093764 AGAAATGGAAGAGAGCGGACTG 60.094 50.000 0.00 0.00 0.00 3.51
2014 2154 3.662759 AAAGAGGGGTGTGTTTTCAGA 57.337 42.857 0.00 0.00 0.00 3.27
2037 2177 7.778470 AAAAGTGTGTGTGTTTTCAGAAAAA 57.222 28.000 10.00 0.00 31.13 1.94
2038 2178 7.921214 TGTAAAAGTGTGTGTGTTTTCAGAAAA 59.079 29.630 4.06 4.06 0.00 2.29
2044 2184 5.705902 ACCTGTAAAAGTGTGTGTGTTTTC 58.294 37.500 0.00 0.00 0.00 2.29
2045 2193 5.715434 ACCTGTAAAAGTGTGTGTGTTTT 57.285 34.783 0.00 0.00 0.00 2.43
2047 2195 5.715434 AAACCTGTAAAAGTGTGTGTGTT 57.285 34.783 0.00 0.00 0.00 3.32
2083 2237 9.289303 CGTTCTTTTGGAGGAATTGTATATTTG 57.711 33.333 0.00 0.00 0.00 2.32
2092 2246 6.715264 ACTAATGTCGTTCTTTTGGAGGAATT 59.285 34.615 0.00 0.00 0.00 2.17
2093 2247 6.149474 CACTAATGTCGTTCTTTTGGAGGAAT 59.851 38.462 0.00 0.00 0.00 3.01
2154 2309 5.864418 ATATGTGAGCATGGCAATCTTTT 57.136 34.783 0.00 0.00 36.58 2.27
2197 2355 6.654793 TCAAATTTGGTTTGCACAAGTAAC 57.345 33.333 17.90 0.00 45.45 2.50
2234 2392 3.670625 TGGAAACGAAACGATCTCCAAT 58.329 40.909 0.00 0.00 0.00 3.16
2250 2408 5.503634 TCTCTGAATTCACATCCTGGAAA 57.496 39.130 3.38 0.00 0.00 3.13
2406 2564 7.047891 TCTCAAATTATACATGAGCCGTTCTT 58.952 34.615 0.00 0.00 40.26 2.52
2440 2598 9.936759 ACACATCCTTTTCTTTTTAAGAACAAA 57.063 25.926 1.55 0.00 46.53 2.83
2539 2697 5.128919 CCCAATCATCACCCAAAACAAAAA 58.871 37.500 0.00 0.00 0.00 1.94
2561 2719 7.809806 GCACAAATAGCAATCTTATAATGGACC 59.190 37.037 0.00 0.00 0.00 4.46
2642 2809 3.069158 AGGCCTCATTGGTGTATACGTAC 59.931 47.826 0.00 0.00 38.35 3.67
2694 2861 6.128391 TGTGTGTAAGTTGTGTTCTGAACTTC 60.128 38.462 20.18 13.68 40.69 3.01
2726 2893 5.646793 CAGAAATGTCAACATGACCTCTGAT 59.353 40.000 19.31 2.91 46.40 2.90
2775 2942 7.663081 CCAGTGAGAACACCAAATATGCTATAT 59.337 37.037 0.00 0.00 46.99 0.86
2776 2943 6.992123 CCAGTGAGAACACCAAATATGCTATA 59.008 38.462 0.00 0.00 46.99 1.31
2780 2947 4.009675 TCCAGTGAGAACACCAAATATGC 58.990 43.478 0.00 0.00 46.99 3.14
2854 3021 4.033817 GCAGTGCTAAGAATGTCAGCTAAG 59.966 45.833 8.18 0.00 36.26 2.18
2881 3048 0.602638 TTGCCTGTCACACCATCGTC 60.603 55.000 0.00 0.00 0.00 4.20
2981 3148 4.655649 TCAGCATATACCTGGTGAGAATGT 59.344 41.667 10.23 0.00 45.80 2.71
3006 3173 9.309516 GTGTACGTATTAGGAAATTCTCATTGA 57.690 33.333 0.00 0.00 0.00 2.57
3083 3250 6.033196 CACGCTGAAAGAATTATGAGCAAAAG 59.967 38.462 0.00 0.00 34.07 2.27
3090 3265 4.191544 CTCCCACGCTGAAAGAATTATGA 58.808 43.478 0.00 0.00 34.07 2.15
3105 3280 3.254060 CACTGTATCTTGAACTCCCACG 58.746 50.000 0.00 0.00 0.00 4.94
3108 3283 4.508662 CTTCCACTGTATCTTGAACTCCC 58.491 47.826 0.00 0.00 0.00 4.30
3377 3552 0.878523 CGTCGCACCCAAAGTCAGAA 60.879 55.000 0.00 0.00 0.00 3.02
3380 3555 1.300620 CTCGTCGCACCCAAAGTCA 60.301 57.895 0.00 0.00 0.00 3.41
3461 3639 0.457851 CTCCACCACTGTCGGATCTC 59.542 60.000 0.00 0.00 0.00 2.75
3498 3676 1.962144 CTTTGGCAGCCTTGGTCAG 59.038 57.895 14.15 0.00 0.00 3.51
3554 3732 4.391869 TGCCTCTGCAGCTGAAAG 57.608 55.556 20.43 14.20 44.23 2.62
3617 3795 1.153997 GCTCTCGGAGTCCAACGAC 60.154 63.158 10.49 0.00 39.50 4.34
3644 3822 2.583593 GCGGCCGAGACATCTGAC 60.584 66.667 33.48 2.06 0.00 3.51
3695 3873 1.227205 GCTCCTCGTCATGCTCAGG 60.227 63.158 0.00 0.00 0.00 3.86
3697 3875 0.108472 CAAGCTCCTCGTCATGCTCA 60.108 55.000 0.00 0.00 34.38 4.26
3839 4116 0.467290 TTGAACTTGACACTGGGGGC 60.467 55.000 0.00 0.00 0.00 5.80
3841 4118 0.944386 CGTTGAACTTGACACTGGGG 59.056 55.000 0.00 0.00 0.00 4.96
3943 4220 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3944 4221 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3945 4222 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3946 4223 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3961 4238 8.921205 GTCACCTAAAATATTACTCCCTCTGTA 58.079 37.037 0.00 0.00 0.00 2.74
3963 4240 7.792032 TGTCACCTAAAATATTACTCCCTCTG 58.208 38.462 0.00 0.00 0.00 3.35
3964 4241 7.989947 TGTCACCTAAAATATTACTCCCTCT 57.010 36.000 0.00 0.00 0.00 3.69
4041 4330 6.594159 AGGTACAAAACGGAATTAGATCAGTG 59.406 38.462 0.00 0.00 0.00 3.66
4044 4333 6.938030 ACAAGGTACAAAACGGAATTAGATCA 59.062 34.615 0.00 0.00 0.00 2.92
4045 4334 7.373778 ACAAGGTACAAAACGGAATTAGATC 57.626 36.000 0.00 0.00 0.00 2.75
4054 4343 5.049167 TGTACAGTACAAGGTACAAAACGG 58.951 41.667 11.21 0.00 44.84 4.44
4071 4361 4.543590 AGAGGGACAAACAGATGTACAG 57.456 45.455 0.33 0.00 35.75 2.74
4072 4362 4.466370 CCTAGAGGGACAAACAGATGTACA 59.534 45.833 0.00 0.00 35.75 2.90
4073 4363 4.680975 GCCTAGAGGGACAAACAGATGTAC 60.681 50.000 0.00 0.00 37.23 2.90
4074 4364 3.451178 GCCTAGAGGGACAAACAGATGTA 59.549 47.826 0.00 0.00 37.23 2.29
4075 4365 2.237392 GCCTAGAGGGACAAACAGATGT 59.763 50.000 0.00 0.00 37.23 3.06
4076 4366 2.503356 AGCCTAGAGGGACAAACAGATG 59.497 50.000 0.00 0.00 37.23 2.90
4077 4367 2.769095 GAGCCTAGAGGGACAAACAGAT 59.231 50.000 0.00 0.00 37.23 2.90
4095 4398 1.030457 TTACGGCAGGTAGCTAGAGC 58.970 55.000 0.00 0.00 44.79 4.09
4096 4399 3.130693 ACTTTTACGGCAGGTAGCTAGAG 59.869 47.826 0.00 0.00 44.79 2.43
4097 4400 3.094572 ACTTTTACGGCAGGTAGCTAGA 58.905 45.455 0.00 0.00 44.79 2.43
4099 4402 3.967332 AACTTTTACGGCAGGTAGCTA 57.033 42.857 0.00 0.00 44.79 3.32
4100 4403 2.853235 AACTTTTACGGCAGGTAGCT 57.147 45.000 0.00 0.00 44.79 3.32
4104 4407 4.007659 CCATTCTAACTTTTACGGCAGGT 58.992 43.478 0.00 0.00 0.00 4.00
4105 4408 4.007659 ACCATTCTAACTTTTACGGCAGG 58.992 43.478 0.00 0.00 0.00 4.85
4106 4409 5.411669 AGAACCATTCTAACTTTTACGGCAG 59.588 40.000 0.00 0.00 38.49 4.85
4108 4411 5.410439 TCAGAACCATTCTAACTTTTACGGC 59.590 40.000 0.00 0.00 38.11 5.68
4110 4413 8.009974 CACTTCAGAACCATTCTAACTTTTACG 58.990 37.037 0.00 0.00 38.11 3.18
4111 4414 8.290325 CCACTTCAGAACCATTCTAACTTTTAC 58.710 37.037 0.00 0.00 38.11 2.01
4112 4415 7.447238 CCCACTTCAGAACCATTCTAACTTTTA 59.553 37.037 0.00 0.00 38.11 1.52
4113 4416 6.265422 CCCACTTCAGAACCATTCTAACTTTT 59.735 38.462 0.00 0.00 38.11 2.27
4114 4417 5.770162 CCCACTTCAGAACCATTCTAACTTT 59.230 40.000 0.00 0.00 38.11 2.66
4115 4418 5.316987 CCCACTTCAGAACCATTCTAACTT 58.683 41.667 0.00 0.00 38.11 2.66
4116 4419 4.263506 CCCCACTTCAGAACCATTCTAACT 60.264 45.833 0.00 0.00 38.11 2.24
4117 4420 4.010349 CCCCACTTCAGAACCATTCTAAC 58.990 47.826 0.00 0.00 38.11 2.34
4120 4423 2.348472 TCCCCACTTCAGAACCATTCT 58.652 47.619 0.00 0.00 41.70 2.40
4121 4424 2.879103 TCCCCACTTCAGAACCATTC 57.121 50.000 0.00 0.00 0.00 2.67
4127 4545 1.909302 GTCTCCATCCCCACTTCAGAA 59.091 52.381 0.00 0.00 0.00 3.02
4161 4579 3.653539 AAACACGAAATTTAGCCACCC 57.346 42.857 0.00 0.00 0.00 4.61
4187 4605 4.862902 TCCTGAATTTCCATGCGAAAAA 57.137 36.364 11.70 0.00 43.61 1.94
4197 4622 2.511637 AGGGGTCAGATCCTGAATTTCC 59.488 50.000 0.00 0.00 42.46 3.13
4258 4683 2.732619 CCTACCGCCAGAACCCCTC 61.733 68.421 0.00 0.00 0.00 4.30
4344 4769 2.426024 GGTACTTATCCACGTCAGCTCA 59.574 50.000 0.00 0.00 0.00 4.26
4394 4819 2.426381 GGTTCTGACGGTAGGGTTAGAG 59.574 54.545 0.00 0.00 34.53 2.43
4408 4833 1.987855 CTACCGCCAGGGGTTCTGA 60.988 63.158 12.02 0.00 46.18 3.27
4483 4909 1.370064 GGTCACACAACCTACCGCT 59.630 57.895 0.00 0.00 36.32 5.52
4700 5126 4.494091 ACTATGTGCCTCTTGTAATGCT 57.506 40.909 0.00 0.00 0.00 3.79
4746 5172 7.660208 TCCTATTAGTTTGTCTTGTGTCTTTCC 59.340 37.037 0.00 0.00 0.00 3.13
4781 5207 1.854227 CCCGCTCTTCGAACTTATCC 58.146 55.000 0.00 0.00 41.67 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.