Multiple sequence alignment - TraesCS1A01G361200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G361200 chr1A 100.000 5881 0 0 1 5881 541998331 541992451 0.000000e+00 10861
1 TraesCS1A01G361200 chr1D 93.927 4446 152 62 326 4698 446272249 446267849 0.000000e+00 6606
2 TraesCS1A01G361200 chr1D 94.191 482 18 6 4727 5199 446267848 446267368 0.000000e+00 726
3 TraesCS1A01G361200 chr1D 94.218 294 13 3 2 293 446272621 446272330 4.180000e-121 446
4 TraesCS1A01G361200 chr1D 87.008 254 24 6 5617 5865 446267377 446267128 1.610000e-70 278
5 TraesCS1A01G361200 chr1B 94.519 3339 124 22 1101 4408 610169286 610165976 0.000000e+00 5097
6 TraesCS1A01G361200 chr1B 89.990 1039 47 23 21 1021 610170352 610169333 0.000000e+00 1290
7 TraesCS1A01G361200 chr1B 90.013 741 52 13 4407 5132 610165940 610165207 0.000000e+00 939
8 TraesCS1A01G361200 chr2D 89.858 424 38 4 5200 5619 56229536 56229114 1.860000e-149 540
9 TraesCS1A01G361200 chr5D 87.857 420 48 2 5200 5616 423244120 423244539 1.900000e-134 490
10 TraesCS1A01G361200 chr7A 87.234 423 49 4 5199 5618 127893137 127892717 1.480000e-130 477
11 TraesCS1A01G361200 chr7A 87.204 422 46 8 5201 5618 706968103 706967686 1.920000e-129 473
12 TraesCS1A01G361200 chr2A 87.150 428 46 7 5200 5621 105414171 105414595 1.480000e-130 477
13 TraesCS1A01G361200 chr4A 86.967 422 50 5 5199 5616 716118955 716118535 2.480000e-128 470
14 TraesCS1A01G361200 chr4A 86.730 422 52 3 5199 5616 716352553 716352974 3.210000e-127 466
15 TraesCS1A01G361200 chr4A 86.493 422 53 3 5199 5616 716103971 716103550 1.490000e-125 460
16 TraesCS1A01G361200 chr3D 86.223 421 54 3 5200 5617 310908293 310908712 2.500000e-123 453


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G361200 chr1A 541992451 541998331 5880 True 10861 10861 100.000000 1 5881 1 chr1A.!!$R1 5880
1 TraesCS1A01G361200 chr1D 446267128 446272621 5493 True 2014 6606 92.336000 2 5865 4 chr1D.!!$R1 5863
2 TraesCS1A01G361200 chr1B 610165207 610170352 5145 True 2442 5097 91.507333 21 5132 3 chr1B.!!$R1 5111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 858 0.539986 TGTTCGAGATTAGGGGTGGC 59.460 55.000 0.00 0.0 0.00 5.01 F
1500 1615 0.029300 CTCGTGTGGTGGCAGTTTTG 59.971 55.000 0.00 0.0 0.00 2.44 F
3024 3159 0.961019 TCACAATGTGCTGCCCTTTC 59.039 50.000 8.78 0.0 32.98 2.62 F
3865 4005 1.808945 CTCAAATGGACTGCACCTGAC 59.191 52.381 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1900 0.609151 TCCCACCTTTCATCGCGTTA 59.391 50.000 5.77 0.00 0.00 3.18 R
3483 3618 3.010584 ACCAATGCCTAGTGGACAAGATT 59.989 43.478 4.21 0.00 44.70 2.40 R
4366 4519 1.075601 TTCCAGACAAGGCCAAGGAT 58.924 50.000 5.01 0.00 0.00 3.24 R
5595 5799 0.179054 GGAAAGTATCCGGTGCTCCC 60.179 60.000 0.00 0.22 38.79 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 211 3.005050 CAGCAACACACAATCAGGTGAAT 59.995 43.478 0.00 0.00 41.32 2.57
223 224 1.134280 AGGTGAATTCCAGAGGCGATG 60.134 52.381 2.27 0.00 0.00 3.84
272 275 5.808042 ATGCAGTATCATAATTGCGATCC 57.192 39.130 0.00 0.00 39.34 3.36
274 277 5.308014 TGCAGTATCATAATTGCGATCCTT 58.692 37.500 0.00 0.00 39.34 3.36
347 397 3.266772 TCAGTGGAATCTGGCCAGTAAAT 59.733 43.478 31.58 15.96 36.96 1.40
350 400 5.297776 CAGTGGAATCTGGCCAGTAAATAAG 59.702 44.000 31.58 13.25 36.96 1.73
360 410 5.109210 GGCCAGTAAATAAGGAATGCAAAC 58.891 41.667 0.00 0.00 0.00 2.93
377 427 1.913951 AACGATGCCATGCCAGGAGA 61.914 55.000 0.00 0.00 0.00 3.71
441 497 1.523095 GCATTTCGTCGAGCATCTACC 59.477 52.381 0.00 0.00 0.00 3.18
718 774 2.825264 CTCGCCATCTCCCCTTCC 59.175 66.667 0.00 0.00 0.00 3.46
719 775 2.768344 TCGCCATCTCCCCTTCCC 60.768 66.667 0.00 0.00 0.00 3.97
767 837 3.741476 GCGGCTCTGCTTTGGGTG 61.741 66.667 0.00 0.00 0.00 4.61
769 839 2.282745 GGCTCTGCTTTGGGTGCT 60.283 61.111 0.00 0.00 0.00 4.40
772 842 1.458639 GCTCTGCTTTGGGTGCTGTT 61.459 55.000 0.00 0.00 0.00 3.16
779 849 2.154462 CTTTGGGTGCTGTTCGAGATT 58.846 47.619 0.00 0.00 0.00 2.40
783 853 1.473434 GGGTGCTGTTCGAGATTAGGG 60.473 57.143 0.00 0.00 0.00 3.53
784 854 1.473434 GGTGCTGTTCGAGATTAGGGG 60.473 57.143 0.00 0.00 0.00 4.79
785 855 1.207329 GTGCTGTTCGAGATTAGGGGT 59.793 52.381 0.00 0.00 0.00 4.95
787 857 1.473434 GCTGTTCGAGATTAGGGGTGG 60.473 57.143 0.00 0.00 0.00 4.61
788 858 0.539986 TGTTCGAGATTAGGGGTGGC 59.460 55.000 0.00 0.00 0.00 5.01
789 859 0.831307 GTTCGAGATTAGGGGTGGCT 59.169 55.000 0.00 0.00 0.00 4.75
790 860 1.209747 GTTCGAGATTAGGGGTGGCTT 59.790 52.381 0.00 0.00 0.00 4.35
791 861 1.120530 TCGAGATTAGGGGTGGCTTC 58.879 55.000 0.00 0.00 0.00 3.86
815 903 1.300542 GCCTGGACGCTCTGCTATC 60.301 63.158 0.00 0.00 0.00 2.08
900 989 0.965866 GGGGGCGGAAAGGAAAAGAG 60.966 60.000 0.00 0.00 0.00 2.85
1055 1150 2.042025 GCCTGAGCCTCCTCCTCT 60.042 66.667 0.00 0.00 37.29 3.69
1095 1206 0.396811 GTATCCTGTGGATTCGGGGG 59.603 60.000 4.30 0.00 39.79 5.40
1098 1209 4.856801 CTGTGGATTCGGGGGCGG 62.857 72.222 0.00 0.00 0.00 6.13
1295 1408 2.746375 CCCATTCTCCCCTGACCCG 61.746 68.421 0.00 0.00 0.00 5.28
1328 1441 7.741785 TCTCCTCCATTTACTGTTTGTTTCTA 58.258 34.615 0.00 0.00 0.00 2.10
1329 1442 8.383175 TCTCCTCCATTTACTGTTTGTTTCTAT 58.617 33.333 0.00 0.00 0.00 1.98
1330 1443 8.335532 TCCTCCATTTACTGTTTGTTTCTATG 57.664 34.615 0.00 0.00 0.00 2.23
1331 1444 7.942341 TCCTCCATTTACTGTTTGTTTCTATGT 59.058 33.333 0.00 0.00 0.00 2.29
1332 1445 9.226606 CCTCCATTTACTGTTTGTTTCTATGTA 57.773 33.333 0.00 0.00 0.00 2.29
1349 1462 3.033368 TGTAGTATTGTGCTTGCACGA 57.967 42.857 16.78 16.78 0.00 4.35
1416 1531 1.924320 GCTGGTCGCTGACTCTACGT 61.924 60.000 0.00 0.00 35.14 3.57
1417 1532 0.179187 CTGGTCGCTGACTCTACGTG 60.179 60.000 0.00 0.00 32.47 4.49
1423 1538 1.468224 CGCTGACTCTACGTGCATTCT 60.468 52.381 0.00 0.00 0.00 2.40
1424 1539 2.223272 CGCTGACTCTACGTGCATTCTA 60.223 50.000 0.00 0.00 0.00 2.10
1429 1544 4.095932 TGACTCTACGTGCATTCTACGATT 59.904 41.667 0.00 0.00 43.82 3.34
1430 1545 4.352039 ACTCTACGTGCATTCTACGATTG 58.648 43.478 0.00 0.00 43.82 2.67
1437 1552 2.371841 TGCATTCTACGATTGGGCCTAT 59.628 45.455 4.53 1.33 0.00 2.57
1439 1554 4.184629 GCATTCTACGATTGGGCCTATAG 58.815 47.826 4.53 5.73 0.00 1.31
1440 1555 3.955650 TTCTACGATTGGGCCTATAGC 57.044 47.619 4.53 0.00 42.60 2.97
1442 1557 2.826128 TCTACGATTGGGCCTATAGCAG 59.174 50.000 4.53 3.39 46.50 4.24
1443 1558 1.717032 ACGATTGGGCCTATAGCAGA 58.283 50.000 4.53 0.00 46.50 4.26
1444 1559 2.260822 ACGATTGGGCCTATAGCAGAT 58.739 47.619 4.53 0.00 46.50 2.90
1445 1560 2.639839 ACGATTGGGCCTATAGCAGATT 59.360 45.455 4.53 0.00 46.50 2.40
1467 1582 5.514500 TTGCTCTCTTAGGTTGGGTTTAT 57.486 39.130 0.00 0.00 0.00 1.40
1469 1584 3.628032 GCTCTCTTAGGTTGGGTTTATGC 59.372 47.826 0.00 0.00 0.00 3.14
1492 1607 1.183030 TGTAGACCCTCGTGTGGTGG 61.183 60.000 2.91 0.00 35.85 4.61
1500 1615 0.029300 CTCGTGTGGTGGCAGTTTTG 59.971 55.000 0.00 0.00 0.00 2.44
1511 1626 3.317993 GTGGCAGTTTTGTGATACTGGTT 59.682 43.478 0.00 0.00 41.56 3.67
1515 1630 2.890945 AGTTTTGTGATACTGGTTGCCC 59.109 45.455 0.00 0.00 0.00 5.36
1579 1701 3.940209 CAGTAGGCTGCCAAATTTTCA 57.060 42.857 22.65 0.00 35.77 2.69
1604 1726 1.963515 CCCCTTGGGCATATAAGTTGC 59.036 52.381 0.00 0.00 35.35 4.17
1614 1737 5.499047 GGCATATAAGTTGCGTGTTCTTAC 58.501 41.667 0.00 0.00 41.07 2.34
1619 1742 3.963383 AGTTGCGTGTTCTTACTTTGG 57.037 42.857 0.00 0.00 0.00 3.28
1623 1746 1.069227 GCGTGTTCTTACTTTGGCTGG 60.069 52.381 0.00 0.00 0.00 4.85
1710 1833 5.007626 GGAAGGAAAATTTTGAAGTTGCACC 59.992 40.000 8.47 0.00 0.00 5.01
1771 1894 8.736244 GTTGTGAGATAATAGCAAACCCTTTTA 58.264 33.333 0.00 0.00 0.00 1.52
1872 1995 1.500396 CCTTACAAACGAAGCCGGC 59.500 57.895 21.89 21.89 40.78 6.13
2263 2394 5.982890 AGCACACTTTATATGTTTGCCTT 57.017 34.783 11.46 0.00 40.68 4.35
2512 2643 8.834749 AGAGAACTGTAAAGGTGAGAAATTAC 57.165 34.615 0.00 0.00 0.00 1.89
2637 2768 4.991056 TCACTGAGCAAGTATCAACTGAAC 59.009 41.667 0.00 0.00 36.83 3.18
3024 3159 0.961019 TCACAATGTGCTGCCCTTTC 59.039 50.000 8.78 0.00 32.98 2.62
3483 3618 6.874134 GCAGAGAAGTTTTCTAACTGTATGGA 59.126 38.462 0.00 0.00 43.74 3.41
3865 4005 1.808945 CTCAAATGGACTGCACCTGAC 59.191 52.381 0.00 0.00 0.00 3.51
3880 4020 2.508716 ACCTGACGAGGAGGTATGTCTA 59.491 50.000 0.00 0.00 42.35 2.59
3901 4041 2.069273 CTGTCCTTGTTACTTGCCTCG 58.931 52.381 0.00 0.00 0.00 4.63
3932 4072 5.861787 GGAAGTGAACAATTGAAAATACCCG 59.138 40.000 13.59 0.00 0.00 5.28
4192 4345 8.962884 AAGAATAATACATGTGTGCATAGTCA 57.037 30.769 9.11 0.00 33.30 3.41
4214 4367 6.037172 GTCACTTTCTTAGCACTTGAACTTGA 59.963 38.462 0.00 0.00 0.00 3.02
4215 4368 6.767902 TCACTTTCTTAGCACTTGAACTTGAT 59.232 34.615 0.00 0.00 0.00 2.57
4216 4369 7.041780 TCACTTTCTTAGCACTTGAACTTGATC 60.042 37.037 0.00 0.00 0.00 2.92
4217 4370 6.767902 ACTTTCTTAGCACTTGAACTTGATCA 59.232 34.615 0.00 0.00 0.00 2.92
4218 4371 7.446625 ACTTTCTTAGCACTTGAACTTGATCAT 59.553 33.333 0.00 0.00 0.00 2.45
4219 4372 8.846943 TTTCTTAGCACTTGAACTTGATCATA 57.153 30.769 0.00 0.00 0.00 2.15
4220 4373 8.484641 TTCTTAGCACTTGAACTTGATCATAG 57.515 34.615 0.00 0.00 0.00 2.23
4221 4374 7.840931 TCTTAGCACTTGAACTTGATCATAGA 58.159 34.615 0.00 0.00 0.00 1.98
4222 4375 8.481314 TCTTAGCACTTGAACTTGATCATAGAT 58.519 33.333 0.00 0.00 0.00 1.98
4223 4376 8.654230 TTAGCACTTGAACTTGATCATAGATC 57.346 34.615 0.00 2.60 0.00 2.75
4381 4534 5.653255 ATATGTAATCCTTGGCCTTGTCT 57.347 39.130 3.32 0.00 0.00 3.41
4382 4535 3.071874 TGTAATCCTTGGCCTTGTCTG 57.928 47.619 3.32 0.00 0.00 3.51
4434 4624 3.482436 CCAAACTTTGGCCTAGTGTGTA 58.518 45.455 20.55 0.00 45.17 2.90
4532 4722 5.255687 ACTGTAGATGATTCCATTGTGCAA 58.744 37.500 0.00 0.00 32.09 4.08
4564 4754 2.849942 TCAACATCACCACAAGACAGG 58.150 47.619 0.00 0.00 0.00 4.00
4649 4840 9.495754 GAAGCTATATTTTGAAAACTAGTGCTG 57.504 33.333 0.00 0.00 0.00 4.41
4669 4860 9.601217 AGTGCTGTAATAATTCTAGACGATTTT 57.399 29.630 0.00 0.00 0.00 1.82
4678 4869 1.068741 CTAGACGATTTTCCCTCGGGG 59.931 57.143 0.00 0.00 46.11 5.73
4699 4890 5.513267 GGGGGCTCCTATAGATTGTGTTTAG 60.513 48.000 0.52 0.00 0.00 1.85
4777 4972 5.978919 TCTTTTCTGCATGACAACATTTCAC 59.021 36.000 0.00 0.00 34.15 3.18
4781 4976 2.957680 TGCATGACAACATTTCACCACT 59.042 40.909 0.00 0.00 34.15 4.00
4892 5087 3.128589 GGAAGAAATAAGTTGGATGCGCA 59.871 43.478 14.96 14.96 0.00 6.09
4925 5120 1.028905 AGTCGCATCCTCAGCTAGAC 58.971 55.000 0.00 0.00 0.00 2.59
4931 5126 1.336440 CATCCTCAGCTAGACCAGTCG 59.664 57.143 0.00 0.00 34.09 4.18
4954 5149 4.320494 GCCTCCTGTTGTGTAACTCAAATG 60.320 45.833 0.00 0.00 38.04 2.32
4978 5173 1.199558 GTTCGGTGCTCTCTAGTCGTT 59.800 52.381 0.00 0.00 0.00 3.85
5079 5274 5.948162 TGATAGTTGTAGGGTCGTACTTTCT 59.052 40.000 0.00 2.27 0.00 2.52
5080 5275 7.112122 TGATAGTTGTAGGGTCGTACTTTCTA 58.888 38.462 0.00 3.87 0.00 2.10
5081 5276 7.776969 TGATAGTTGTAGGGTCGTACTTTCTAT 59.223 37.037 0.00 7.21 0.00 1.98
5132 5336 3.736126 GCTTTGGTAGCTTCCATGCAATC 60.736 47.826 23.31 6.67 46.77 2.67
5136 5340 2.615912 GGTAGCTTCCATGCAATCTGTC 59.384 50.000 4.19 0.00 34.99 3.51
5153 5357 8.296713 GCAATCTGTCCAGTGAAATTTTAGTTA 58.703 33.333 0.00 0.00 0.00 2.24
5165 5369 4.696899 ATTTTAGTTAGACGGGCAAAGC 57.303 40.909 0.00 0.00 0.00 3.51
5174 5378 1.172812 ACGGGCAAAGCTTGGACTTC 61.173 55.000 6.65 0.00 0.00 3.01
5181 5385 3.304726 GCAAAGCTTGGACTTCTACCAAC 60.305 47.826 4.56 0.00 41.64 3.77
5190 5394 0.179081 CTTCTACCAACCGGCTAGGC 60.179 60.000 6.15 6.15 46.52 3.93
5191 5395 1.619807 TTCTACCAACCGGCTAGGCC 61.620 60.000 11.22 0.00 46.52 5.19
5201 5405 3.541713 GCTAGGCCAGTCTCGGGG 61.542 72.222 5.01 0.00 0.00 5.73
5202 5406 2.279073 CTAGGCCAGTCTCGGGGA 59.721 66.667 5.01 0.00 0.00 4.81
5203 5407 1.381327 CTAGGCCAGTCTCGGGGAA 60.381 63.158 5.01 0.00 0.00 3.97
5204 5408 0.976073 CTAGGCCAGTCTCGGGGAAA 60.976 60.000 5.01 0.00 0.00 3.13
5205 5409 0.976073 TAGGCCAGTCTCGGGGAAAG 60.976 60.000 5.01 0.00 0.00 2.62
5206 5410 2.593956 GGCCAGTCTCGGGGAAAGT 61.594 63.158 0.00 0.00 0.00 2.66
5207 5411 1.262640 GGCCAGTCTCGGGGAAAGTA 61.263 60.000 0.00 0.00 0.00 2.24
5208 5412 0.831307 GCCAGTCTCGGGGAAAGTAT 59.169 55.000 0.00 0.00 0.00 2.12
5209 5413 1.202545 GCCAGTCTCGGGGAAAGTATC 60.203 57.143 0.00 0.00 0.00 2.24
5223 5427 4.939271 GAAAGTATCCAGTGCTCCTAGTC 58.061 47.826 0.00 0.00 0.00 2.59
5224 5428 3.963476 AGTATCCAGTGCTCCTAGTCT 57.037 47.619 0.00 0.00 0.00 3.24
5225 5429 4.258457 AGTATCCAGTGCTCCTAGTCTT 57.742 45.455 0.00 0.00 0.00 3.01
5226 5430 3.957497 AGTATCCAGTGCTCCTAGTCTTG 59.043 47.826 0.00 0.00 0.00 3.02
5227 5431 1.561643 TCCAGTGCTCCTAGTCTTGG 58.438 55.000 0.00 0.00 0.00 3.61
5228 5432 0.539051 CCAGTGCTCCTAGTCTTGGG 59.461 60.000 0.16 0.00 0.00 4.12
5229 5433 1.270907 CAGTGCTCCTAGTCTTGGGT 58.729 55.000 0.16 0.00 0.00 4.51
5230 5434 2.457598 CAGTGCTCCTAGTCTTGGGTA 58.542 52.381 0.16 0.00 0.00 3.69
5231 5435 2.166664 CAGTGCTCCTAGTCTTGGGTAC 59.833 54.545 0.16 2.11 0.00 3.34
5232 5436 2.043252 AGTGCTCCTAGTCTTGGGTACT 59.957 50.000 0.16 4.15 0.00 2.73
5233 5437 2.427812 GTGCTCCTAGTCTTGGGTACTC 59.572 54.545 0.16 0.00 0.00 2.59
5234 5438 2.033372 GCTCCTAGTCTTGGGTACTCC 58.967 57.143 0.16 0.00 0.00 3.85
5245 5449 2.736670 GGGTACTCCCGGTACTCTAA 57.263 55.000 0.00 0.00 45.72 2.10
5246 5450 3.235750 GGGTACTCCCGGTACTCTAAT 57.764 52.381 0.00 0.00 45.72 1.73
5247 5451 2.889678 GGGTACTCCCGGTACTCTAATG 59.110 54.545 0.00 0.00 45.72 1.90
5248 5452 3.689569 GGGTACTCCCGGTACTCTAATGT 60.690 52.174 0.00 0.00 45.72 2.71
5249 5453 4.827304 GTACTCCCGGTACTCTAATGTC 57.173 50.000 0.00 0.00 45.25 3.06
5250 5454 3.377253 ACTCCCGGTACTCTAATGTCA 57.623 47.619 0.00 0.00 0.00 3.58
5251 5455 3.705051 ACTCCCGGTACTCTAATGTCAA 58.295 45.455 0.00 0.00 0.00 3.18
5252 5456 4.091549 ACTCCCGGTACTCTAATGTCAAA 58.908 43.478 0.00 0.00 0.00 2.69
5253 5457 4.529377 ACTCCCGGTACTCTAATGTCAAAA 59.471 41.667 0.00 0.00 0.00 2.44
5254 5458 5.012354 ACTCCCGGTACTCTAATGTCAAAAA 59.988 40.000 0.00 0.00 0.00 1.94
5324 5528 7.977818 TCATAATGAATATGACTACAAGCCCT 58.022 34.615 0.00 0.00 44.30 5.19
5325 5529 8.097038 TCATAATGAATATGACTACAAGCCCTC 58.903 37.037 0.00 0.00 44.30 4.30
5326 5530 4.689612 TGAATATGACTACAAGCCCTCC 57.310 45.455 0.00 0.00 0.00 4.30
5327 5531 4.037222 TGAATATGACTACAAGCCCTCCA 58.963 43.478 0.00 0.00 0.00 3.86
5328 5532 4.473196 TGAATATGACTACAAGCCCTCCAA 59.527 41.667 0.00 0.00 0.00 3.53
5329 5533 5.045213 TGAATATGACTACAAGCCCTCCAAA 60.045 40.000 0.00 0.00 0.00 3.28
5330 5534 5.653255 ATATGACTACAAGCCCTCCAAAT 57.347 39.130 0.00 0.00 0.00 2.32
5331 5535 3.806949 TGACTACAAGCCCTCCAAATT 57.193 42.857 0.00 0.00 0.00 1.82
5332 5536 4.112634 TGACTACAAGCCCTCCAAATTT 57.887 40.909 0.00 0.00 0.00 1.82
5333 5537 4.079253 TGACTACAAGCCCTCCAAATTTC 58.921 43.478 0.00 0.00 0.00 2.17
5334 5538 4.079253 GACTACAAGCCCTCCAAATTTCA 58.921 43.478 0.00 0.00 0.00 2.69
5335 5539 4.479158 ACTACAAGCCCTCCAAATTTCAA 58.521 39.130 0.00 0.00 0.00 2.69
5336 5540 4.524328 ACTACAAGCCCTCCAAATTTCAAG 59.476 41.667 0.00 0.00 0.00 3.02
5337 5541 3.308401 ACAAGCCCTCCAAATTTCAAGT 58.692 40.909 0.00 0.00 0.00 3.16
5338 5542 3.321968 ACAAGCCCTCCAAATTTCAAGTC 59.678 43.478 0.00 0.00 0.00 3.01
5339 5543 2.529632 AGCCCTCCAAATTTCAAGTCC 58.470 47.619 0.00 0.00 0.00 3.85
5340 5544 2.158325 AGCCCTCCAAATTTCAAGTCCA 60.158 45.455 0.00 0.00 0.00 4.02
5341 5545 2.632512 GCCCTCCAAATTTCAAGTCCAA 59.367 45.455 0.00 0.00 0.00 3.53
5342 5546 3.070878 GCCCTCCAAATTTCAAGTCCAAA 59.929 43.478 0.00 0.00 0.00 3.28
5343 5547 4.263025 GCCCTCCAAATTTCAAGTCCAAAT 60.263 41.667 0.00 0.00 0.00 2.32
5344 5548 5.745770 GCCCTCCAAATTTCAAGTCCAAATT 60.746 40.000 0.00 0.00 35.40 1.82
5345 5549 5.934043 CCCTCCAAATTTCAAGTCCAAATTC 59.066 40.000 0.00 0.00 33.24 2.17
5346 5550 5.634859 CCTCCAAATTTCAAGTCCAAATTCG 59.365 40.000 0.00 0.00 33.24 3.34
5347 5551 6.398234 TCCAAATTTCAAGTCCAAATTCGA 57.602 33.333 0.00 0.00 33.24 3.71
5348 5552 6.810911 TCCAAATTTCAAGTCCAAATTCGAA 58.189 32.000 0.00 0.00 33.24 3.71
5349 5553 7.268586 TCCAAATTTCAAGTCCAAATTCGAAA 58.731 30.769 0.00 0.00 33.24 3.46
5350 5554 7.223777 TCCAAATTTCAAGTCCAAATTCGAAAC 59.776 33.333 0.00 0.00 33.24 2.78
5351 5555 7.010923 CCAAATTTCAAGTCCAAATTCGAAACA 59.989 33.333 0.00 0.00 33.24 2.83
5352 5556 7.463469 AATTTCAAGTCCAAATTCGAAACAC 57.537 32.000 0.00 0.00 29.14 3.32
5353 5557 5.568685 TTCAAGTCCAAATTCGAAACACA 57.431 34.783 0.00 0.00 0.00 3.72
5354 5558 4.915704 TCAAGTCCAAATTCGAAACACAC 58.084 39.130 0.00 0.00 0.00 3.82
5355 5559 4.396478 TCAAGTCCAAATTCGAAACACACA 59.604 37.500 0.00 0.00 0.00 3.72
5356 5560 5.067153 TCAAGTCCAAATTCGAAACACACAT 59.933 36.000 0.00 0.00 0.00 3.21
5357 5561 5.514274 AGTCCAAATTCGAAACACACATT 57.486 34.783 0.00 0.00 0.00 2.71
5358 5562 5.280945 AGTCCAAATTCGAAACACACATTG 58.719 37.500 0.00 0.00 0.00 2.82
5359 5563 5.067153 AGTCCAAATTCGAAACACACATTGA 59.933 36.000 0.00 0.00 0.00 2.57
5360 5564 5.399301 GTCCAAATTCGAAACACACATTGAG 59.601 40.000 0.00 0.00 0.00 3.02
5361 5565 5.298026 TCCAAATTCGAAACACACATTGAGA 59.702 36.000 0.00 0.00 0.00 3.27
5362 5566 5.976534 CCAAATTCGAAACACACATTGAGAA 59.023 36.000 0.00 0.00 0.00 2.87
5363 5567 6.475076 CCAAATTCGAAACACACATTGAGAAA 59.525 34.615 0.00 0.00 0.00 2.52
5364 5568 7.329582 CAAATTCGAAACACACATTGAGAAAC 58.670 34.615 0.00 0.00 0.00 2.78
5365 5569 5.553290 TTCGAAACACACATTGAGAAACA 57.447 34.783 0.00 0.00 0.00 2.83
5366 5570 5.553290 TCGAAACACACATTGAGAAACAA 57.447 34.783 0.00 0.00 42.95 2.83
5367 5571 5.944013 TCGAAACACACATTGAGAAACAAA 58.056 33.333 0.00 0.00 42.03 2.83
5368 5572 6.382608 TCGAAACACACATTGAGAAACAAAA 58.617 32.000 0.00 0.00 42.03 2.44
5369 5573 6.863645 TCGAAACACACATTGAGAAACAAAAA 59.136 30.769 0.00 0.00 42.03 1.94
5370 5574 7.543868 TCGAAACACACATTGAGAAACAAAAAT 59.456 29.630 0.00 0.00 42.03 1.82
5371 5575 8.802856 CGAAACACACATTGAGAAACAAAAATA 58.197 29.630 0.00 0.00 42.03 1.40
5401 5605 9.553064 AATCTAGCATGAATAGTGTAAAGAAGG 57.447 33.333 0.00 0.00 0.00 3.46
5402 5606 7.500992 TCTAGCATGAATAGTGTAAAGAAGGG 58.499 38.462 0.00 0.00 0.00 3.95
5403 5607 6.313519 AGCATGAATAGTGTAAAGAAGGGA 57.686 37.500 0.00 0.00 0.00 4.20
5404 5608 6.116126 AGCATGAATAGTGTAAAGAAGGGAC 58.884 40.000 0.00 0.00 0.00 4.46
5405 5609 5.880332 GCATGAATAGTGTAAAGAAGGGACA 59.120 40.000 0.00 0.00 0.00 4.02
5406 5610 6.374333 GCATGAATAGTGTAAAGAAGGGACAA 59.626 38.462 0.00 0.00 0.00 3.18
5407 5611 7.094377 GCATGAATAGTGTAAAGAAGGGACAAA 60.094 37.037 0.00 0.00 0.00 2.83
5408 5612 8.792633 CATGAATAGTGTAAAGAAGGGACAAAA 58.207 33.333 0.00 0.00 0.00 2.44
5409 5613 8.391075 TGAATAGTGTAAAGAAGGGACAAAAG 57.609 34.615 0.00 0.00 0.00 2.27
5410 5614 6.819397 ATAGTGTAAAGAAGGGACAAAAGC 57.181 37.500 0.00 0.00 0.00 3.51
5411 5615 4.532834 AGTGTAAAGAAGGGACAAAAGCA 58.467 39.130 0.00 0.00 0.00 3.91
5412 5616 4.953579 AGTGTAAAGAAGGGACAAAAGCAA 59.046 37.500 0.00 0.00 0.00 3.91
5413 5617 5.041287 GTGTAAAGAAGGGACAAAAGCAAC 58.959 41.667 0.00 0.00 0.00 4.17
5414 5618 4.707448 TGTAAAGAAGGGACAAAAGCAACA 59.293 37.500 0.00 0.00 0.00 3.33
5415 5619 5.362430 TGTAAAGAAGGGACAAAAGCAACAT 59.638 36.000 0.00 0.00 0.00 2.71
5416 5620 5.357742 AAAGAAGGGACAAAAGCAACATT 57.642 34.783 0.00 0.00 0.00 2.71
5417 5621 4.326504 AGAAGGGACAAAAGCAACATTG 57.673 40.909 0.00 0.00 0.00 2.82
5418 5622 3.960102 AGAAGGGACAAAAGCAACATTGA 59.040 39.130 0.00 0.00 0.00 2.57
5419 5623 4.590222 AGAAGGGACAAAAGCAACATTGAT 59.410 37.500 0.00 0.00 0.00 2.57
5420 5624 5.774690 AGAAGGGACAAAAGCAACATTGATA 59.225 36.000 0.00 0.00 0.00 2.15
5421 5625 5.391312 AGGGACAAAAGCAACATTGATAC 57.609 39.130 0.00 0.00 0.00 2.24
5422 5626 5.079643 AGGGACAAAAGCAACATTGATACT 58.920 37.500 0.00 0.00 0.00 2.12
5423 5627 6.245408 AGGGACAAAAGCAACATTGATACTA 58.755 36.000 0.00 0.00 0.00 1.82
5424 5628 6.891908 AGGGACAAAAGCAACATTGATACTAT 59.108 34.615 0.00 0.00 0.00 2.12
5425 5629 7.397192 AGGGACAAAAGCAACATTGATACTATT 59.603 33.333 0.00 0.00 0.00 1.73
5426 5630 8.034804 GGGACAAAAGCAACATTGATACTATTT 58.965 33.333 0.00 0.00 0.00 1.40
5434 5638 9.499479 AGCAACATTGATACTATTTAGATCTGG 57.501 33.333 5.18 0.00 0.00 3.86
5435 5639 9.494271 GCAACATTGATACTATTTAGATCTGGA 57.506 33.333 5.18 0.00 0.00 3.86
5473 5677 9.605955 TGTTACTGAATGTACATTTCGATTTTG 57.394 29.630 21.63 8.82 0.00 2.44
5474 5678 9.061610 GTTACTGAATGTACATTTCGATTTTGG 57.938 33.333 21.63 7.51 0.00 3.28
5475 5679 7.447374 ACTGAATGTACATTTCGATTTTGGA 57.553 32.000 21.63 0.00 0.00 3.53
5476 5680 7.305474 ACTGAATGTACATTTCGATTTTGGAC 58.695 34.615 21.63 5.68 0.00 4.02
5477 5681 6.616947 TGAATGTACATTTCGATTTTGGACC 58.383 36.000 21.63 5.49 0.00 4.46
5478 5682 6.432783 TGAATGTACATTTCGATTTTGGACCT 59.567 34.615 21.63 0.00 0.00 3.85
5479 5683 5.621197 TGTACATTTCGATTTTGGACCTG 57.379 39.130 0.00 0.00 0.00 4.00
5480 5684 5.309638 TGTACATTTCGATTTTGGACCTGA 58.690 37.500 0.00 0.00 0.00 3.86
5481 5685 5.765677 TGTACATTTCGATTTTGGACCTGAA 59.234 36.000 0.00 0.00 0.00 3.02
5482 5686 5.782893 ACATTTCGATTTTGGACCTGAAA 57.217 34.783 0.00 0.00 0.00 2.69
5483 5687 6.345096 ACATTTCGATTTTGGACCTGAAAT 57.655 33.333 6.22 6.22 36.71 2.17
5484 5688 6.758254 ACATTTCGATTTTGGACCTGAAATT 58.242 32.000 7.53 0.00 34.74 1.82
5485 5689 7.216494 ACATTTCGATTTTGGACCTGAAATTT 58.784 30.769 7.53 0.00 34.74 1.82
5486 5690 7.714813 ACATTTCGATTTTGGACCTGAAATTTT 59.285 29.630 7.53 0.00 34.74 1.82
5487 5691 8.558700 CATTTCGATTTTGGACCTGAAATTTTT 58.441 29.630 7.53 0.00 34.74 1.94
5488 5692 9.771534 ATTTCGATTTTGGACCTGAAATTTTTA 57.228 25.926 7.53 0.00 33.57 1.52
5489 5693 8.810652 TTCGATTTTGGACCTGAAATTTTTAG 57.189 30.769 7.53 0.00 0.00 1.85
5490 5694 7.375053 TCGATTTTGGACCTGAAATTTTTAGG 58.625 34.615 16.23 16.23 37.61 2.69
5491 5695 6.589907 CGATTTTGGACCTGAAATTTTTAGGG 59.410 38.462 20.45 8.91 35.89 3.53
5492 5696 5.816955 TTTGGACCTGAAATTTTTAGGGG 57.183 39.130 20.45 9.53 35.89 4.79
5493 5697 4.750833 TGGACCTGAAATTTTTAGGGGA 57.249 40.909 20.45 4.84 35.89 4.81
5494 5698 5.283876 TGGACCTGAAATTTTTAGGGGAT 57.716 39.130 20.45 3.66 35.89 3.85
5495 5699 5.022787 TGGACCTGAAATTTTTAGGGGATG 58.977 41.667 20.45 0.24 35.89 3.51
5496 5700 5.023452 GGACCTGAAATTTTTAGGGGATGT 58.977 41.667 20.45 3.03 35.89 3.06
5497 5701 5.105351 GGACCTGAAATTTTTAGGGGATGTG 60.105 44.000 20.45 0.00 35.89 3.21
5498 5702 4.777366 ACCTGAAATTTTTAGGGGATGTGG 59.223 41.667 20.45 0.00 35.89 4.17
5499 5703 4.777366 CCTGAAATTTTTAGGGGATGTGGT 59.223 41.667 11.24 0.00 0.00 4.16
5500 5704 5.955355 CCTGAAATTTTTAGGGGATGTGGTA 59.045 40.000 11.24 0.00 0.00 3.25
5501 5705 6.439058 CCTGAAATTTTTAGGGGATGTGGTAA 59.561 38.462 11.24 0.00 0.00 2.85
5502 5706 7.234661 TGAAATTTTTAGGGGATGTGGTAAC 57.765 36.000 0.00 0.00 0.00 2.50
5519 5723 6.757897 TGGTAACATTCCTTGTGATCATTC 57.242 37.500 0.00 0.00 46.17 2.67
5520 5724 6.484288 TGGTAACATTCCTTGTGATCATTCT 58.516 36.000 0.00 0.00 46.17 2.40
5521 5725 6.599244 TGGTAACATTCCTTGTGATCATTCTC 59.401 38.462 0.00 0.00 46.17 2.87
5522 5726 6.599244 GGTAACATTCCTTGTGATCATTCTCA 59.401 38.462 0.00 0.00 38.99 3.27
5523 5727 7.284034 GGTAACATTCCTTGTGATCATTCTCAT 59.716 37.037 0.00 0.00 38.99 2.90
5524 5728 7.713734 AACATTCCTTGTGATCATTCTCATT 57.286 32.000 0.00 0.00 38.99 2.57
5525 5729 7.713734 ACATTCCTTGTGATCATTCTCATTT 57.286 32.000 0.00 0.00 37.11 2.32
5526 5730 8.130671 ACATTCCTTGTGATCATTCTCATTTT 57.869 30.769 0.00 0.00 37.11 1.82
5527 5731 8.591072 ACATTCCTTGTGATCATTCTCATTTTT 58.409 29.630 0.00 0.00 37.11 1.94
5579 5783 3.651803 TTTTTAACATTGGAGCACCGG 57.348 42.857 0.00 0.00 39.42 5.28
5580 5784 1.540267 TTTAACATTGGAGCACCGGG 58.460 50.000 6.32 0.00 39.42 5.73
5581 5785 0.693622 TTAACATTGGAGCACCGGGA 59.306 50.000 6.32 0.00 39.42 5.14
5582 5786 0.251916 TAACATTGGAGCACCGGGAG 59.748 55.000 6.32 0.00 39.42 4.30
5583 5787 1.779061 AACATTGGAGCACCGGGAGT 61.779 55.000 6.32 0.00 39.42 3.85
5584 5788 0.907704 ACATTGGAGCACCGGGAGTA 60.908 55.000 6.32 0.00 39.42 2.59
5585 5789 0.462047 CATTGGAGCACCGGGAGTAC 60.462 60.000 6.32 0.00 39.42 2.73
5586 5790 1.623542 ATTGGAGCACCGGGAGTACC 61.624 60.000 6.32 3.04 39.42 3.34
5603 5807 2.677875 CCAAAGGCTGGGAGCACC 60.678 66.667 0.00 0.00 44.75 5.01
5604 5808 3.058160 CAAAGGCTGGGAGCACCG 61.058 66.667 0.00 0.00 44.75 4.94
5611 5815 4.472701 TGGGAGCACCGGATACTT 57.527 55.556 9.46 0.00 44.64 2.24
5612 5816 2.691663 TGGGAGCACCGGATACTTT 58.308 52.632 9.46 0.00 44.64 2.66
5613 5817 0.539986 TGGGAGCACCGGATACTTTC 59.460 55.000 9.46 0.00 44.64 2.62
5614 5818 0.179054 GGGAGCACCGGATACTTTCC 60.179 60.000 9.46 6.05 41.59 3.13
5615 5819 0.179054 GGAGCACCGGATACTTTCCC 60.179 60.000 9.46 0.00 42.06 3.97
5655 5859 4.145756 CACGCCACAAAACGTTAGAATTTC 59.854 41.667 0.00 0.00 41.32 2.17
5665 5869 3.008049 ACGTTAGAATTTCTCCTGCCACT 59.992 43.478 1.27 0.00 0.00 4.00
5677 5881 2.142761 TGCCACTGCAGTCCACTCT 61.143 57.895 18.64 0.00 44.23 3.24
5696 5900 6.526566 ACTCTAGTGACGTGAACAAAATTC 57.473 37.500 0.00 0.00 0.00 2.17
5697 5901 6.281405 ACTCTAGTGACGTGAACAAAATTCT 58.719 36.000 0.00 0.00 0.00 2.40
5721 5925 9.170734 TCTGAAACATCTAAGATGAATTCCTTG 57.829 33.333 2.27 0.00 0.00 3.61
5723 5927 7.394077 TGAAACATCTAAGATGAATTCCTTGCA 59.606 33.333 2.27 0.00 0.00 4.08
5724 5928 6.690194 ACATCTAAGATGAATTCCTTGCAC 57.310 37.500 2.27 0.00 0.00 4.57
5725 5929 6.421485 ACATCTAAGATGAATTCCTTGCACT 58.579 36.000 2.27 0.00 0.00 4.40
5727 5931 6.305272 TCTAAGATGAATTCCTTGCACTCT 57.695 37.500 2.27 0.00 0.00 3.24
5728 5932 7.423844 TCTAAGATGAATTCCTTGCACTCTA 57.576 36.000 2.27 0.00 0.00 2.43
5731 5935 6.059787 AGATGAATTCCTTGCACTCTAGTT 57.940 37.500 2.27 0.00 0.00 2.24
5732 5936 6.479884 AGATGAATTCCTTGCACTCTAGTTT 58.520 36.000 2.27 0.00 0.00 2.66
5761 5965 5.526846 AGCAAAACCACACCATTTACAATTG 59.473 36.000 3.24 3.24 0.00 2.32
5762 5966 5.277731 GCAAAACCACACCATTTACAATTGG 60.278 40.000 10.83 0.00 39.02 3.16
5763 5967 5.878406 AAACCACACCATTTACAATTGGA 57.122 34.783 10.83 0.00 36.79 3.53
5768 5972 5.925969 CCACACCATTTACAATTGGAGAAAC 59.074 40.000 10.83 0.00 36.79 2.78
5769 5973 6.462207 CCACACCATTTACAATTGGAGAAACA 60.462 38.462 10.83 0.00 36.79 2.83
5784 5988 6.405538 TGGAGAAACAAAGTGCAAAAAGAAT 58.594 32.000 0.00 0.00 0.00 2.40
5813 6020 4.690748 TGAGAAAAGAAGGACAAGCATACG 59.309 41.667 0.00 0.00 0.00 3.06
5815 6022 4.691216 AGAAAAGAAGGACAAGCATACGAC 59.309 41.667 0.00 0.00 0.00 4.34
5821 6028 1.940613 GGACAAGCATACGACCCAATC 59.059 52.381 0.00 0.00 0.00 2.67
5850 6057 0.457035 CGCATTGCAGTTGGCCTATT 59.543 50.000 9.69 0.00 43.89 1.73
5851 6058 1.135024 CGCATTGCAGTTGGCCTATTT 60.135 47.619 9.69 0.00 43.89 1.40
5862 6069 4.527816 AGTTGGCCTATTTTGAGCATTGAA 59.472 37.500 3.32 0.00 0.00 2.69
5865 6072 3.195396 GGCCTATTTTGAGCATTGAACCA 59.805 43.478 0.00 0.00 0.00 3.67
5866 6073 4.427312 GCCTATTTTGAGCATTGAACCAG 58.573 43.478 0.00 0.00 0.00 4.00
5867 6074 4.158394 GCCTATTTTGAGCATTGAACCAGA 59.842 41.667 0.00 0.00 0.00 3.86
5868 6075 5.644644 CCTATTTTGAGCATTGAACCAGAC 58.355 41.667 0.00 0.00 0.00 3.51
5869 6076 5.183713 CCTATTTTGAGCATTGAACCAGACA 59.816 40.000 0.00 0.00 0.00 3.41
5870 6077 3.988379 TTTGAGCATTGAACCAGACAC 57.012 42.857 0.00 0.00 0.00 3.67
5871 6078 2.936919 TGAGCATTGAACCAGACACT 57.063 45.000 0.00 0.00 0.00 3.55
5872 6079 2.497138 TGAGCATTGAACCAGACACTG 58.503 47.619 0.00 0.00 0.00 3.66
5873 6080 2.104622 TGAGCATTGAACCAGACACTGA 59.895 45.455 0.00 0.00 32.44 3.41
5874 6081 3.141398 GAGCATTGAACCAGACACTGAA 58.859 45.455 0.00 0.00 32.44 3.02
5875 6082 3.144506 AGCATTGAACCAGACACTGAAG 58.855 45.455 0.00 0.00 32.44 3.02
5876 6083 3.141398 GCATTGAACCAGACACTGAAGA 58.859 45.455 0.00 0.00 32.44 2.87
5877 6084 3.188048 GCATTGAACCAGACACTGAAGAG 59.812 47.826 0.00 0.00 32.44 2.85
5878 6085 4.635223 CATTGAACCAGACACTGAAGAGA 58.365 43.478 0.00 0.00 32.44 3.10
5879 6086 4.963318 TTGAACCAGACACTGAAGAGAT 57.037 40.909 0.00 0.00 32.44 2.75
5880 6087 4.527509 TGAACCAGACACTGAAGAGATC 57.472 45.455 0.00 0.00 32.44 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.843368 CTGGGGATGCTGTGAAATGT 58.157 50.000 0.00 0.00 0.00 2.71
4 5 1.913951 ATCGCTGGGGATGCTGTGAA 61.914 55.000 0.00 0.00 0.00 3.18
150 151 3.208692 AGGAGAAGTACTGGGAGGATCAT 59.791 47.826 0.00 0.00 36.25 2.45
210 211 0.901827 TGCTTACATCGCCTCTGGAA 59.098 50.000 0.00 0.00 0.00 3.53
223 224 2.100749 AGGCTTGGTTTTGTGTGCTTAC 59.899 45.455 0.00 0.00 0.00 2.34
289 292 8.416329 GTGATATGTGGCTTCAAATTTAGGAAT 58.584 33.333 0.00 0.00 0.00 3.01
360 410 1.072678 ATCTCCTGGCATGGCATCG 59.927 57.895 23.59 15.58 0.00 3.84
377 427 6.432162 ACAGCTCGCATCATAAAATTATCCAT 59.568 34.615 0.00 0.00 0.00 3.41
382 432 4.576053 AGCACAGCTCGCATCATAAAATTA 59.424 37.500 7.37 0.00 30.62 1.40
418 474 1.409064 AGATGCTCGACGAAATGCCTA 59.591 47.619 0.00 0.00 0.00 3.93
513 569 0.108615 CTACAAGGTCAGGCCACTCG 60.109 60.000 5.01 0.00 40.61 4.18
561 617 4.077184 CCGCCTTCTACACCGCCA 62.077 66.667 0.00 0.00 0.00 5.69
755 811 1.165907 CGAACAGCACCCAAAGCAGA 61.166 55.000 0.00 0.00 0.00 4.26
759 825 1.813513 ATCTCGAACAGCACCCAAAG 58.186 50.000 0.00 0.00 0.00 2.77
760 826 2.270352 AATCTCGAACAGCACCCAAA 57.730 45.000 0.00 0.00 0.00 3.28
761 827 2.354704 CCTAATCTCGAACAGCACCCAA 60.355 50.000 0.00 0.00 0.00 4.12
767 837 1.473434 CCACCCCTAATCTCGAACAGC 60.473 57.143 0.00 0.00 0.00 4.40
769 839 0.539986 GCCACCCCTAATCTCGAACA 59.460 55.000 0.00 0.00 0.00 3.18
772 842 1.120530 GAAGCCACCCCTAATCTCGA 58.879 55.000 0.00 0.00 0.00 4.04
787 857 4.432741 GTCCAGGCCCAGGGAAGC 62.433 72.222 10.89 0.00 34.34 3.86
788 858 4.101448 CGTCCAGGCCCAGGGAAG 62.101 72.222 10.89 9.25 34.34 3.46
1037 1132 2.364842 GAGGAGGAGGCTCAGGCA 60.365 66.667 17.69 0.00 40.87 4.75
1098 1209 1.515081 TCGAATGTGACGGGGAAAAC 58.485 50.000 0.00 0.00 0.00 2.43
1295 1408 0.106318 AAATGGAGGAGAGGCCATGC 60.106 55.000 5.01 0.00 43.85 4.06
1328 1441 3.370978 GTCGTGCAAGCACAATACTACAT 59.629 43.478 23.23 0.00 46.47 2.29
1329 1442 2.734606 GTCGTGCAAGCACAATACTACA 59.265 45.455 23.23 0.00 46.47 2.74
1330 1443 2.734606 TGTCGTGCAAGCACAATACTAC 59.265 45.455 23.23 11.69 46.47 2.73
1331 1444 2.993220 CTGTCGTGCAAGCACAATACTA 59.007 45.455 23.23 9.07 46.47 1.82
1332 1445 1.800586 CTGTCGTGCAAGCACAATACT 59.199 47.619 23.23 0.00 46.47 2.12
1349 1462 1.696097 AAACTGGCCGAGGTCACTGT 61.696 55.000 0.00 0.00 0.00 3.55
1354 1467 1.949257 CACAAAACTGGCCGAGGTC 59.051 57.895 0.00 0.00 0.00 3.85
1356 1469 1.898574 AGCACAAAACTGGCCGAGG 60.899 57.895 0.00 0.00 0.00 4.63
1359 1472 0.318107 CTTCAGCACAAAACTGGCCG 60.318 55.000 0.00 0.00 35.78 6.13
1408 1523 4.352039 CAATCGTAGAATGCACGTAGAGT 58.648 43.478 0.00 0.00 43.58 3.24
1412 1527 2.816689 CCCAATCGTAGAATGCACGTA 58.183 47.619 0.00 0.00 43.58 3.57
1416 1531 0.546122 AGGCCCAATCGTAGAATGCA 59.454 50.000 0.00 0.00 43.58 3.96
1417 1532 2.543777 TAGGCCCAATCGTAGAATGC 57.456 50.000 0.00 0.00 43.58 3.56
1423 1538 2.884320 TCTGCTATAGGCCCAATCGTA 58.116 47.619 0.00 0.00 40.92 3.43
1424 1539 1.717032 TCTGCTATAGGCCCAATCGT 58.283 50.000 0.00 0.00 40.92 3.73
1429 1544 2.276732 GCAAATCTGCTATAGGCCCA 57.723 50.000 0.00 0.00 45.74 5.36
1440 1555 3.944015 CCCAACCTAAGAGAGCAAATCTG 59.056 47.826 0.00 0.00 38.84 2.90
1442 1557 3.956744 ACCCAACCTAAGAGAGCAAATC 58.043 45.455 0.00 0.00 0.00 2.17
1443 1558 4.388577 AACCCAACCTAAGAGAGCAAAT 57.611 40.909 0.00 0.00 0.00 2.32
1444 1559 3.876309 AACCCAACCTAAGAGAGCAAA 57.124 42.857 0.00 0.00 0.00 3.68
1445 1560 3.876309 AAACCCAACCTAAGAGAGCAA 57.124 42.857 0.00 0.00 0.00 3.91
1450 1565 6.015434 ACAAAAGCATAAACCCAACCTAAGAG 60.015 38.462 0.00 0.00 0.00 2.85
1467 1582 1.414919 ACACGAGGGTCTACAAAAGCA 59.585 47.619 0.00 0.00 0.00 3.91
1469 1584 2.224209 ACCACACGAGGGTCTACAAAAG 60.224 50.000 0.00 0.00 31.49 2.27
1492 1607 3.308530 GCAACCAGTATCACAAAACTGC 58.691 45.455 0.00 0.00 41.45 4.40
1604 1726 1.535462 CCCAGCCAAAGTAAGAACACG 59.465 52.381 0.00 0.00 0.00 4.49
1614 1737 4.599047 TTGTTAATCAACCCAGCCAAAG 57.401 40.909 0.00 0.00 33.41 2.77
1619 1742 3.445096 AGCTCATTGTTAATCAACCCAGC 59.555 43.478 0.00 0.00 38.97 4.85
1623 1746 5.517770 GCAATCAGCTCATTGTTAATCAACC 59.482 40.000 12.22 0.00 38.43 3.77
1694 1817 4.582701 TCATCGGTGCAACTTCAAAATT 57.417 36.364 0.00 0.00 36.74 1.82
1696 1819 3.380004 AGTTCATCGGTGCAACTTCAAAA 59.620 39.130 0.00 0.00 36.74 2.44
1700 1823 1.873591 ACAGTTCATCGGTGCAACTTC 59.126 47.619 0.00 0.00 36.74 3.01
1710 1833 2.733552 CCACACAGAAGACAGTTCATCG 59.266 50.000 0.00 0.00 0.00 3.84
1771 1894 3.869246 CACCTTTCATCGCGTTAGGTAAT 59.131 43.478 5.77 0.00 37.12 1.89
1777 1900 0.609151 TCCCACCTTTCATCGCGTTA 59.391 50.000 5.77 0.00 0.00 3.18
1779 1902 0.828022 TATCCCACCTTTCATCGCGT 59.172 50.000 5.77 0.00 0.00 6.01
1872 1995 4.098654 AGAGATCTAAACCTGGTGACATCG 59.901 45.833 0.00 0.00 41.51 3.84
1927 2050 5.023533 ACTTTGAGCAGTACTTCAAGTCA 57.976 39.130 9.38 0.00 29.24 3.41
1928 2051 5.993106 AACTTTGAGCAGTACTTCAAGTC 57.007 39.130 9.38 0.00 32.46 3.01
1929 2052 9.209175 CTATAAACTTTGAGCAGTACTTCAAGT 57.791 33.333 9.38 0.00 34.15 3.16
1930 2053 9.209175 ACTATAAACTTTGAGCAGTACTTCAAG 57.791 33.333 9.38 7.33 0.00 3.02
2263 2394 9.953565 AGCATTGTATAACCTAAAAAGTAGTGA 57.046 29.630 0.00 0.00 0.00 3.41
2395 2526 7.063308 GTCAAAAGAGAGAGCATAGAAGAACAG 59.937 40.741 0.00 0.00 0.00 3.16
2937 3072 8.629158 ACTTTAAGTGAAATTAACAGCATCACA 58.371 29.630 0.00 0.00 42.12 3.58
3483 3618 3.010584 ACCAATGCCTAGTGGACAAGATT 59.989 43.478 4.21 0.00 44.70 2.40
3865 4005 2.879646 GGACAGTAGACATACCTCCTCG 59.120 54.545 0.00 0.00 30.98 4.63
3880 4020 2.548067 CGAGGCAAGTAACAAGGACAGT 60.548 50.000 0.00 0.00 0.00 3.55
3901 4041 5.499139 TCAATTGTTCACTTCCTGTTCAC 57.501 39.130 5.13 0.00 0.00 3.18
3932 4072 5.437946 CCCTGGGGAAAGATTAGAAGTAAC 58.562 45.833 4.27 0.00 37.50 2.50
4192 4345 6.767902 TGATCAAGTTCAAGTGCTAAGAAAGT 59.232 34.615 0.00 0.00 0.00 2.66
4252 4405 5.937540 TGAAAAATGACTCGAGCCTGATTAA 59.062 36.000 13.61 0.00 0.00 1.40
4366 4519 1.075601 TTCCAGACAAGGCCAAGGAT 58.924 50.000 5.01 0.00 0.00 3.24
4381 4534 7.649533 ATGATGCTAGAAAATGATGTTTCCA 57.350 32.000 0.00 0.00 38.10 3.53
4382 4535 9.622004 CATATGATGCTAGAAAATGATGTTTCC 57.378 33.333 0.00 0.00 38.10 3.13
4532 4722 3.198068 GTGATGTTGATATCAGGCGTGT 58.802 45.455 5.39 0.00 37.72 4.49
4534 4724 2.170397 TGGTGATGTTGATATCAGGCGT 59.830 45.455 5.39 4.81 37.72 5.68
4564 4754 4.519540 AATACTGTTGGGAAATGTGCAC 57.480 40.909 10.75 10.75 0.00 4.57
4602 4792 3.006537 TCTGCTATTTGTATCTACCCGGC 59.993 47.826 0.00 0.00 0.00 6.13
4649 4840 8.913656 CGAGGGAAAATCGTCTAGAATTATTAC 58.086 37.037 0.00 0.00 35.48 1.89
4652 4843 6.456501 CCGAGGGAAAATCGTCTAGAATTAT 58.543 40.000 0.00 0.00 38.50 1.28
4678 4869 6.583562 ACACTAAACACAATCTATAGGAGCC 58.416 40.000 0.00 0.00 0.00 4.70
4679 4870 7.764443 TCAACACTAAACACAATCTATAGGAGC 59.236 37.037 0.00 0.00 0.00 4.70
4680 4871 9.653287 TTCAACACTAAACACAATCTATAGGAG 57.347 33.333 0.00 0.00 0.00 3.69
4699 4890 7.433719 TGTTATTGTTAGTGCACAATTCAACAC 59.566 33.333 21.04 16.37 43.54 3.32
4708 4899 5.689514 GCAAATGTGTTATTGTTAGTGCACA 59.310 36.000 21.04 1.84 40.42 4.57
4722 4913 2.051941 CCAGCAGGGCAAATGTGTT 58.948 52.632 0.00 0.00 0.00 3.32
4723 4914 3.781760 CCAGCAGGGCAAATGTGT 58.218 55.556 0.00 0.00 0.00 3.72
4747 4938 8.743085 ATGTTGTCATGCAGAAAAGATATAGT 57.257 30.769 0.00 0.00 26.25 2.12
4751 4942 7.809331 GTGAAATGTTGTCATGCAGAAAAGATA 59.191 33.333 0.00 0.00 34.19 1.98
4752 4943 6.643770 GTGAAATGTTGTCATGCAGAAAAGAT 59.356 34.615 0.00 0.00 34.19 2.40
4753 4944 5.978919 GTGAAATGTTGTCATGCAGAAAAGA 59.021 36.000 0.00 0.00 34.19 2.52
4754 4945 5.176223 GGTGAAATGTTGTCATGCAGAAAAG 59.824 40.000 0.00 0.00 34.19 2.27
4777 4972 7.864108 TCATACCATACAGAAATTCAAGTGG 57.136 36.000 0.00 0.91 0.00 4.00
4781 4976 7.281999 TGCGATTCATACCATACAGAAATTCAA 59.718 33.333 0.00 0.00 0.00 2.69
4892 5087 1.559831 GCGACTGCAGCTTTTTGTTT 58.440 45.000 15.27 0.00 42.15 2.83
4925 5120 1.669115 CACAACAGGAGGCGACTGG 60.669 63.158 0.00 0.00 44.43 4.00
4931 5126 2.543777 TGAGTTACACAACAGGAGGC 57.456 50.000 0.00 0.00 37.10 4.70
4954 5149 2.987821 GACTAGAGAGCACCGAACAAAC 59.012 50.000 0.00 0.00 0.00 2.93
5079 5274 8.469200 CAACCCTAAAATTGCTGAATTCTCATA 58.531 33.333 7.05 0.00 30.02 2.15
5080 5275 7.325694 CAACCCTAAAATTGCTGAATTCTCAT 58.674 34.615 7.05 0.00 30.02 2.90
5081 5276 6.295236 CCAACCCTAAAATTGCTGAATTCTCA 60.295 38.462 7.05 2.06 30.02 3.27
5132 5336 7.360101 CCGTCTAACTAAAATTTCACTGGACAG 60.360 40.741 0.00 0.00 0.00 3.51
5136 5340 5.391629 GCCCGTCTAACTAAAATTTCACTGG 60.392 44.000 0.00 0.00 0.00 4.00
5153 5357 1.600916 GTCCAAGCTTTGCCCGTCT 60.601 57.895 0.00 0.00 0.00 4.18
5165 5369 1.944430 GCCGGTTGGTAGAAGTCCAAG 60.944 57.143 1.90 0.00 44.21 3.61
5174 5378 2.504519 GGCCTAGCCGGTTGGTAG 59.495 66.667 1.90 0.00 43.31 3.18
5189 5393 0.831307 ATACTTTCCCCGAGACTGGC 59.169 55.000 0.00 0.00 0.00 4.85
5190 5394 1.413077 GGATACTTTCCCCGAGACTGG 59.587 57.143 0.00 0.00 38.75 4.00
5191 5395 2.101582 CTGGATACTTTCCCCGAGACTG 59.898 54.545 0.00 0.00 44.77 3.51
5192 5396 2.292323 ACTGGATACTTTCCCCGAGACT 60.292 50.000 0.00 0.00 44.77 3.24
5193 5397 2.108970 ACTGGATACTTTCCCCGAGAC 58.891 52.381 0.00 0.00 44.77 3.36
5194 5398 2.108168 CACTGGATACTTTCCCCGAGA 58.892 52.381 0.00 0.00 44.77 4.04
5195 5399 1.473434 GCACTGGATACTTTCCCCGAG 60.473 57.143 0.00 0.00 44.77 4.63
5196 5400 0.539986 GCACTGGATACTTTCCCCGA 59.460 55.000 0.00 0.00 44.77 5.14
5197 5401 0.541863 AGCACTGGATACTTTCCCCG 59.458 55.000 0.00 0.00 44.77 5.73
5198 5402 1.134068 GGAGCACTGGATACTTTCCCC 60.134 57.143 0.00 0.00 44.77 4.81
5199 5403 1.840635 AGGAGCACTGGATACTTTCCC 59.159 52.381 0.00 0.00 44.77 3.97
5200 5404 3.707102 ACTAGGAGCACTGGATACTTTCC 59.293 47.826 0.00 0.00 45.69 3.13
5201 5405 4.647399 AGACTAGGAGCACTGGATACTTTC 59.353 45.833 0.00 0.00 37.61 2.62
5202 5406 4.615513 AGACTAGGAGCACTGGATACTTT 58.384 43.478 0.00 0.00 37.61 2.66
5203 5407 4.258457 AGACTAGGAGCACTGGATACTT 57.742 45.455 0.00 0.00 37.61 2.24
5204 5408 3.957497 CAAGACTAGGAGCACTGGATACT 59.043 47.826 0.00 0.00 37.61 2.12
5205 5409 3.068873 CCAAGACTAGGAGCACTGGATAC 59.931 52.174 0.00 0.00 0.00 2.24
5206 5410 3.300388 CCAAGACTAGGAGCACTGGATA 58.700 50.000 0.00 0.00 0.00 2.59
5207 5411 2.114616 CCAAGACTAGGAGCACTGGAT 58.885 52.381 0.00 0.00 0.00 3.41
5208 5412 1.561643 CCAAGACTAGGAGCACTGGA 58.438 55.000 0.00 0.00 0.00 3.86
5209 5413 0.539051 CCCAAGACTAGGAGCACTGG 59.461 60.000 0.00 0.00 0.00 4.00
5210 5414 1.270907 ACCCAAGACTAGGAGCACTG 58.729 55.000 0.00 0.00 0.00 3.66
5211 5415 2.043252 AGTACCCAAGACTAGGAGCACT 59.957 50.000 0.00 0.00 0.00 4.40
5212 5416 2.427812 GAGTACCCAAGACTAGGAGCAC 59.572 54.545 0.00 0.00 0.00 4.40
5213 5417 2.623502 GGAGTACCCAAGACTAGGAGCA 60.624 54.545 0.00 0.00 34.14 4.26
5214 5418 2.033372 GGAGTACCCAAGACTAGGAGC 58.967 57.143 0.00 0.00 34.14 4.70
5229 5433 4.508551 TGACATTAGAGTACCGGGAGTA 57.491 45.455 6.32 0.00 0.00 2.59
5230 5434 3.377253 TGACATTAGAGTACCGGGAGT 57.623 47.619 6.32 0.00 0.00 3.85
5231 5435 4.730949 TTTGACATTAGAGTACCGGGAG 57.269 45.455 6.32 0.00 0.00 4.30
5232 5436 5.486735 TTTTTGACATTAGAGTACCGGGA 57.513 39.130 6.32 0.00 0.00 5.14
5296 5500 9.056005 GGCTTGTAGTCATATTCATTATGAACA 57.944 33.333 10.02 0.00 46.38 3.18
5297 5501 8.507249 GGGCTTGTAGTCATATTCATTATGAAC 58.493 37.037 10.02 0.00 46.38 3.18
5298 5502 8.439971 AGGGCTTGTAGTCATATTCATTATGAA 58.560 33.333 10.23 10.23 46.38 2.57
5299 5503 7.977818 AGGGCTTGTAGTCATATTCATTATGA 58.022 34.615 0.00 0.00 43.53 2.15
5300 5504 7.335422 GGAGGGCTTGTAGTCATATTCATTATG 59.665 40.741 0.00 0.00 39.31 1.90
5301 5505 7.017551 TGGAGGGCTTGTAGTCATATTCATTAT 59.982 37.037 0.00 0.00 0.00 1.28
5302 5506 6.328934 TGGAGGGCTTGTAGTCATATTCATTA 59.671 38.462 0.00 0.00 0.00 1.90
5303 5507 5.132648 TGGAGGGCTTGTAGTCATATTCATT 59.867 40.000 0.00 0.00 0.00 2.57
5304 5508 4.660303 TGGAGGGCTTGTAGTCATATTCAT 59.340 41.667 0.00 0.00 0.00 2.57
5305 5509 4.037222 TGGAGGGCTTGTAGTCATATTCA 58.963 43.478 0.00 0.00 0.00 2.57
5306 5510 4.689612 TGGAGGGCTTGTAGTCATATTC 57.310 45.455 0.00 0.00 0.00 1.75
5307 5511 5.450818 TTTGGAGGGCTTGTAGTCATATT 57.549 39.130 0.00 0.00 0.00 1.28
5308 5512 5.653255 ATTTGGAGGGCTTGTAGTCATAT 57.347 39.130 0.00 0.00 0.00 1.78
5309 5513 5.450818 AATTTGGAGGGCTTGTAGTCATA 57.549 39.130 0.00 0.00 0.00 2.15
5310 5514 4.322057 AATTTGGAGGGCTTGTAGTCAT 57.678 40.909 0.00 0.00 0.00 3.06
5311 5515 3.806949 AATTTGGAGGGCTTGTAGTCA 57.193 42.857 0.00 0.00 0.00 3.41
5312 5516 4.079253 TGAAATTTGGAGGGCTTGTAGTC 58.921 43.478 0.00 0.00 0.00 2.59
5313 5517 4.112634 TGAAATTTGGAGGGCTTGTAGT 57.887 40.909 0.00 0.00 0.00 2.73
5314 5518 4.524328 ACTTGAAATTTGGAGGGCTTGTAG 59.476 41.667 0.00 0.00 0.00 2.74
5315 5519 4.479158 ACTTGAAATTTGGAGGGCTTGTA 58.521 39.130 0.00 0.00 0.00 2.41
5316 5520 3.308401 ACTTGAAATTTGGAGGGCTTGT 58.692 40.909 0.00 0.00 0.00 3.16
5317 5521 3.306294 GGACTTGAAATTTGGAGGGCTTG 60.306 47.826 0.00 0.00 0.00 4.01
5318 5522 2.899900 GGACTTGAAATTTGGAGGGCTT 59.100 45.455 0.00 0.00 0.00 4.35
5319 5523 2.158325 TGGACTTGAAATTTGGAGGGCT 60.158 45.455 0.00 0.00 0.00 5.19
5320 5524 2.247358 TGGACTTGAAATTTGGAGGGC 58.753 47.619 0.00 0.00 0.00 5.19
5321 5525 4.953940 TTTGGACTTGAAATTTGGAGGG 57.046 40.909 0.00 0.00 0.00 4.30
5322 5526 5.634859 CGAATTTGGACTTGAAATTTGGAGG 59.365 40.000 0.00 0.00 34.00 4.30
5323 5527 6.446318 TCGAATTTGGACTTGAAATTTGGAG 58.554 36.000 0.00 0.00 35.88 3.86
5324 5528 6.398234 TCGAATTTGGACTTGAAATTTGGA 57.602 33.333 0.00 0.00 35.88 3.53
5325 5529 7.010923 TGTTTCGAATTTGGACTTGAAATTTGG 59.989 33.333 0.00 0.00 35.88 3.28
5326 5530 7.845622 GTGTTTCGAATTTGGACTTGAAATTTG 59.154 33.333 0.00 0.00 36.26 2.32
5327 5531 7.547370 TGTGTTTCGAATTTGGACTTGAAATTT 59.453 29.630 0.00 0.00 34.00 1.82
5328 5532 7.010091 GTGTGTTTCGAATTTGGACTTGAAATT 59.990 33.333 0.00 0.00 36.04 1.82
5329 5533 6.475402 GTGTGTTTCGAATTTGGACTTGAAAT 59.525 34.615 0.00 0.00 0.00 2.17
5330 5534 5.802956 GTGTGTTTCGAATTTGGACTTGAAA 59.197 36.000 0.00 0.00 0.00 2.69
5331 5535 5.106118 TGTGTGTTTCGAATTTGGACTTGAA 60.106 36.000 0.00 0.00 0.00 2.69
5332 5536 4.396478 TGTGTGTTTCGAATTTGGACTTGA 59.604 37.500 0.00 0.00 0.00 3.02
5333 5537 4.667262 TGTGTGTTTCGAATTTGGACTTG 58.333 39.130 0.00 0.00 0.00 3.16
5334 5538 4.974368 TGTGTGTTTCGAATTTGGACTT 57.026 36.364 0.00 0.00 0.00 3.01
5335 5539 5.067153 TCAATGTGTGTTTCGAATTTGGACT 59.933 36.000 0.00 0.00 0.00 3.85
5336 5540 5.277825 TCAATGTGTGTTTCGAATTTGGAC 58.722 37.500 0.00 0.00 0.00 4.02
5337 5541 5.298026 TCTCAATGTGTGTTTCGAATTTGGA 59.702 36.000 0.00 0.00 0.00 3.53
5338 5542 5.518812 TCTCAATGTGTGTTTCGAATTTGG 58.481 37.500 0.00 0.00 0.00 3.28
5339 5543 7.009083 TGTTTCTCAATGTGTGTTTCGAATTTG 59.991 33.333 0.00 0.00 0.00 2.32
5340 5544 7.032580 TGTTTCTCAATGTGTGTTTCGAATTT 58.967 30.769 0.00 0.00 0.00 1.82
5341 5545 6.559810 TGTTTCTCAATGTGTGTTTCGAATT 58.440 32.000 0.00 0.00 0.00 2.17
5342 5546 6.130298 TGTTTCTCAATGTGTGTTTCGAAT 57.870 33.333 0.00 0.00 0.00 3.34
5343 5547 5.553290 TGTTTCTCAATGTGTGTTTCGAA 57.447 34.783 0.00 0.00 0.00 3.71
5344 5548 5.553290 TTGTTTCTCAATGTGTGTTTCGA 57.447 34.783 0.00 0.00 0.00 3.71
5345 5549 6.624710 TTTTGTTTCTCAATGTGTGTTTCG 57.375 33.333 0.00 0.00 35.84 3.46
5375 5579 9.553064 CCTTCTTTACACTATTCATGCTAGATT 57.447 33.333 0.00 0.00 0.00 2.40
5376 5580 8.153550 CCCTTCTTTACACTATTCATGCTAGAT 58.846 37.037 0.00 1.23 0.00 1.98
5377 5581 7.344612 TCCCTTCTTTACACTATTCATGCTAGA 59.655 37.037 0.00 0.00 0.00 2.43
5378 5582 7.439655 GTCCCTTCTTTACACTATTCATGCTAG 59.560 40.741 0.00 0.00 0.00 3.42
5379 5583 7.093068 TGTCCCTTCTTTACACTATTCATGCTA 60.093 37.037 0.00 0.00 0.00 3.49
5380 5584 6.116126 GTCCCTTCTTTACACTATTCATGCT 58.884 40.000 0.00 0.00 0.00 3.79
5381 5585 5.880332 TGTCCCTTCTTTACACTATTCATGC 59.120 40.000 0.00 0.00 0.00 4.06
5382 5586 7.921786 TTGTCCCTTCTTTACACTATTCATG 57.078 36.000 0.00 0.00 0.00 3.07
5383 5587 8.934023 TTTTGTCCCTTCTTTACACTATTCAT 57.066 30.769 0.00 0.00 0.00 2.57
5384 5588 7.040686 GCTTTTGTCCCTTCTTTACACTATTCA 60.041 37.037 0.00 0.00 0.00 2.57
5385 5589 7.040686 TGCTTTTGTCCCTTCTTTACACTATTC 60.041 37.037 0.00 0.00 0.00 1.75
5386 5590 6.775629 TGCTTTTGTCCCTTCTTTACACTATT 59.224 34.615 0.00 0.00 0.00 1.73
5387 5591 6.303839 TGCTTTTGTCCCTTCTTTACACTAT 58.696 36.000 0.00 0.00 0.00 2.12
5388 5592 5.686753 TGCTTTTGTCCCTTCTTTACACTA 58.313 37.500 0.00 0.00 0.00 2.74
5389 5593 4.532834 TGCTTTTGTCCCTTCTTTACACT 58.467 39.130 0.00 0.00 0.00 3.55
5390 5594 4.911514 TGCTTTTGTCCCTTCTTTACAC 57.088 40.909 0.00 0.00 0.00 2.90
5391 5595 4.707448 TGTTGCTTTTGTCCCTTCTTTACA 59.293 37.500 0.00 0.00 0.00 2.41
5392 5596 5.257082 TGTTGCTTTTGTCCCTTCTTTAC 57.743 39.130 0.00 0.00 0.00 2.01
5393 5597 6.097554 TCAATGTTGCTTTTGTCCCTTCTTTA 59.902 34.615 0.00 0.00 0.00 1.85
5394 5598 5.104982 TCAATGTTGCTTTTGTCCCTTCTTT 60.105 36.000 0.00 0.00 0.00 2.52
5395 5599 4.405358 TCAATGTTGCTTTTGTCCCTTCTT 59.595 37.500 0.00 0.00 0.00 2.52
5396 5600 3.960102 TCAATGTTGCTTTTGTCCCTTCT 59.040 39.130 0.00 0.00 0.00 2.85
5397 5601 4.320608 TCAATGTTGCTTTTGTCCCTTC 57.679 40.909 0.00 0.00 0.00 3.46
5398 5602 4.961438 ATCAATGTTGCTTTTGTCCCTT 57.039 36.364 0.00 0.00 0.00 3.95
5399 5603 5.079643 AGTATCAATGTTGCTTTTGTCCCT 58.920 37.500 0.00 0.00 0.00 4.20
5400 5604 5.391312 AGTATCAATGTTGCTTTTGTCCC 57.609 39.130 0.00 0.00 0.00 4.46
5401 5605 8.986477 AAATAGTATCAATGTTGCTTTTGTCC 57.014 30.769 0.00 0.00 0.00 4.02
5408 5612 9.499479 CCAGATCTAAATAGTATCAATGTTGCT 57.501 33.333 0.00 0.00 0.00 3.91
5409 5613 9.494271 TCCAGATCTAAATAGTATCAATGTTGC 57.506 33.333 0.00 0.00 0.00 4.17
5447 5651 9.605955 CAAAATCGAAATGTACATTCAGTAACA 57.394 29.630 21.02 3.77 33.72 2.41
5448 5652 9.061610 CCAAAATCGAAATGTACATTCAGTAAC 57.938 33.333 21.02 8.20 33.72 2.50
5449 5653 9.004717 TCCAAAATCGAAATGTACATTCAGTAA 57.995 29.630 21.02 6.57 33.72 2.24
5450 5654 8.447833 GTCCAAAATCGAAATGTACATTCAGTA 58.552 33.333 21.02 8.19 0.00 2.74
5451 5655 7.305474 GTCCAAAATCGAAATGTACATTCAGT 58.695 34.615 21.02 6.26 0.00 3.41
5452 5656 6.747280 GGTCCAAAATCGAAATGTACATTCAG 59.253 38.462 21.02 16.88 0.00 3.02
5453 5657 6.432783 AGGTCCAAAATCGAAATGTACATTCA 59.567 34.615 21.02 9.09 0.00 2.57
5454 5658 6.747280 CAGGTCCAAAATCGAAATGTACATTC 59.253 38.462 21.02 13.19 0.00 2.67
5455 5659 6.432783 TCAGGTCCAAAATCGAAATGTACATT 59.567 34.615 15.47 15.47 0.00 2.71
5456 5660 5.943416 TCAGGTCCAAAATCGAAATGTACAT 59.057 36.000 1.41 1.41 0.00 2.29
5457 5661 5.309638 TCAGGTCCAAAATCGAAATGTACA 58.690 37.500 0.00 0.00 0.00 2.90
5458 5662 5.873179 TCAGGTCCAAAATCGAAATGTAC 57.127 39.130 0.00 0.00 0.00 2.90
5459 5663 6.885952 TTTCAGGTCCAAAATCGAAATGTA 57.114 33.333 0.00 0.00 0.00 2.29
5460 5664 5.782893 TTTCAGGTCCAAAATCGAAATGT 57.217 34.783 0.00 0.00 0.00 2.71
5461 5665 7.656707 AAATTTCAGGTCCAAAATCGAAATG 57.343 32.000 0.00 0.00 34.31 2.32
5462 5666 8.675705 AAAAATTTCAGGTCCAAAATCGAAAT 57.324 26.923 0.00 0.00 35.25 2.17
5463 5667 9.255304 CTAAAAATTTCAGGTCCAAAATCGAAA 57.745 29.630 0.00 0.00 0.00 3.46
5464 5668 7.870445 CCTAAAAATTTCAGGTCCAAAATCGAA 59.130 33.333 9.62 0.00 0.00 3.71
5465 5669 7.375053 CCTAAAAATTTCAGGTCCAAAATCGA 58.625 34.615 9.62 0.00 0.00 3.59
5466 5670 6.589907 CCCTAAAAATTTCAGGTCCAAAATCG 59.410 38.462 14.55 0.00 0.00 3.34
5467 5671 6.878923 CCCCTAAAAATTTCAGGTCCAAAATC 59.121 38.462 14.55 0.00 0.00 2.17
5468 5672 6.560687 TCCCCTAAAAATTTCAGGTCCAAAAT 59.439 34.615 14.55 0.00 0.00 1.82
5469 5673 5.905913 TCCCCTAAAAATTTCAGGTCCAAAA 59.094 36.000 14.55 0.00 0.00 2.44
5470 5674 5.468658 TCCCCTAAAAATTTCAGGTCCAAA 58.531 37.500 14.55 0.00 0.00 3.28
5471 5675 5.081315 TCCCCTAAAAATTTCAGGTCCAA 57.919 39.130 14.55 0.00 0.00 3.53
5472 5676 4.750833 TCCCCTAAAAATTTCAGGTCCA 57.249 40.909 14.55 0.30 0.00 4.02
5473 5677 5.023452 ACATCCCCTAAAAATTTCAGGTCC 58.977 41.667 14.55 0.00 0.00 4.46
5474 5678 5.105351 CCACATCCCCTAAAAATTTCAGGTC 60.105 44.000 14.55 0.00 0.00 3.85
5475 5679 4.777366 CCACATCCCCTAAAAATTTCAGGT 59.223 41.667 14.55 0.00 0.00 4.00
5476 5680 4.777366 ACCACATCCCCTAAAAATTTCAGG 59.223 41.667 10.53 10.53 0.00 3.86
5477 5681 7.039363 TGTTACCACATCCCCTAAAAATTTCAG 60.039 37.037 0.00 0.00 0.00 3.02
5478 5682 6.782988 TGTTACCACATCCCCTAAAAATTTCA 59.217 34.615 0.00 0.00 0.00 2.69
5479 5683 7.234661 TGTTACCACATCCCCTAAAAATTTC 57.765 36.000 0.00 0.00 0.00 2.17
5480 5684 7.806680 ATGTTACCACATCCCCTAAAAATTT 57.193 32.000 0.00 0.00 39.69 1.82
5481 5685 7.093068 GGAATGTTACCACATCCCCTAAAAATT 60.093 37.037 0.00 0.00 43.34 1.82
5482 5686 6.382859 GGAATGTTACCACATCCCCTAAAAAT 59.617 38.462 0.00 0.00 43.34 1.82
5483 5687 5.717654 GGAATGTTACCACATCCCCTAAAAA 59.282 40.000 0.00 0.00 43.34 1.94
5484 5688 5.015817 AGGAATGTTACCACATCCCCTAAAA 59.984 40.000 7.21 0.00 38.63 1.52
5485 5689 4.542525 AGGAATGTTACCACATCCCCTAAA 59.457 41.667 7.21 0.00 38.63 1.85
5486 5690 4.116113 AGGAATGTTACCACATCCCCTAA 58.884 43.478 7.21 0.00 38.63 2.69
5487 5691 3.743132 AGGAATGTTACCACATCCCCTA 58.257 45.455 7.21 0.00 38.63 3.53
5488 5692 2.573463 AGGAATGTTACCACATCCCCT 58.427 47.619 0.00 4.34 38.63 4.79
5489 5693 3.023832 CAAGGAATGTTACCACATCCCC 58.976 50.000 0.00 0.00 38.63 4.81
5490 5694 3.443681 CACAAGGAATGTTACCACATCCC 59.556 47.826 0.00 0.00 43.34 3.85
5491 5695 4.331968 TCACAAGGAATGTTACCACATCC 58.668 43.478 0.00 0.00 43.34 3.51
5492 5696 5.647658 TGATCACAAGGAATGTTACCACATC 59.352 40.000 0.00 0.00 43.34 3.06
5493 5697 5.569355 TGATCACAAGGAATGTTACCACAT 58.431 37.500 0.00 0.00 46.34 3.21
5494 5698 4.979335 TGATCACAAGGAATGTTACCACA 58.021 39.130 0.00 0.00 41.46 4.17
5495 5699 6.375455 AGAATGATCACAAGGAATGTTACCAC 59.625 38.462 0.00 0.00 41.46 4.16
5496 5700 6.484288 AGAATGATCACAAGGAATGTTACCA 58.516 36.000 0.00 0.00 41.46 3.25
5497 5701 6.599244 TGAGAATGATCACAAGGAATGTTACC 59.401 38.462 0.00 0.00 41.46 2.85
5498 5702 7.615582 TGAGAATGATCACAAGGAATGTTAC 57.384 36.000 0.00 0.00 41.46 2.50
5499 5703 8.812513 AATGAGAATGATCACAAGGAATGTTA 57.187 30.769 0.00 0.00 41.46 2.41
5500 5704 7.713734 AATGAGAATGATCACAAGGAATGTT 57.286 32.000 0.00 0.00 41.46 2.71
5501 5705 7.713734 AAATGAGAATGATCACAAGGAATGT 57.286 32.000 0.00 0.00 45.34 2.71
5502 5706 8.997621 AAAAATGAGAATGATCACAAGGAATG 57.002 30.769 0.00 0.00 29.78 2.67
5559 5763 2.297597 CCCGGTGCTCCAATGTTAAAAA 59.702 45.455 0.00 0.00 0.00 1.94
5560 5764 1.889829 CCCGGTGCTCCAATGTTAAAA 59.110 47.619 0.00 0.00 0.00 1.52
5561 5765 1.074084 TCCCGGTGCTCCAATGTTAAA 59.926 47.619 0.00 0.00 0.00 1.52
5562 5766 0.693622 TCCCGGTGCTCCAATGTTAA 59.306 50.000 0.00 0.00 0.00 2.01
5563 5767 0.251916 CTCCCGGTGCTCCAATGTTA 59.748 55.000 0.00 0.00 0.00 2.41
5564 5768 1.002134 CTCCCGGTGCTCCAATGTT 60.002 57.895 0.00 0.00 0.00 2.71
5565 5769 0.907704 TACTCCCGGTGCTCCAATGT 60.908 55.000 0.00 0.91 0.00 2.71
5566 5770 0.462047 GTACTCCCGGTGCTCCAATG 60.462 60.000 0.00 0.00 0.00 2.82
5567 5771 1.623542 GGTACTCCCGGTGCTCCAAT 61.624 60.000 0.00 0.00 0.00 3.16
5568 5772 2.288025 GGTACTCCCGGTGCTCCAA 61.288 63.158 0.00 0.00 0.00 3.53
5569 5773 2.682494 GGTACTCCCGGTGCTCCA 60.682 66.667 0.00 0.00 0.00 3.86
5570 5774 3.468140 GGGTACTCCCGGTGCTCC 61.468 72.222 0.00 0.00 44.74 4.70
5587 5791 3.058160 CGGTGCTCCCAGCCTTTG 61.058 66.667 0.00 0.00 41.51 2.77
5588 5792 4.351054 CCGGTGCTCCCAGCCTTT 62.351 66.667 0.00 0.00 41.51 3.11
5590 5794 3.696518 TATCCGGTGCTCCCAGCCT 62.697 63.158 0.00 0.00 41.51 4.58
5591 5795 3.161450 TATCCGGTGCTCCCAGCC 61.161 66.667 0.00 0.00 41.51 4.85
5592 5796 1.972660 AAGTATCCGGTGCTCCCAGC 61.973 60.000 0.00 0.00 42.82 4.85
5593 5797 0.541863 AAAGTATCCGGTGCTCCCAG 59.458 55.000 0.00 0.00 0.00 4.45
5594 5798 0.539986 GAAAGTATCCGGTGCTCCCA 59.460 55.000 0.00 0.00 0.00 4.37
5595 5799 0.179054 GGAAAGTATCCGGTGCTCCC 60.179 60.000 0.00 0.22 38.79 4.30
5596 5800 3.381370 GGAAAGTATCCGGTGCTCC 57.619 57.895 0.00 0.00 38.79 4.70
5605 5809 1.536284 CGAGACTGGCGGGAAAGTATC 60.536 57.143 0.00 0.00 32.54 2.24
5606 5810 0.460311 CGAGACTGGCGGGAAAGTAT 59.540 55.000 0.00 0.00 0.00 2.12
5607 5811 1.888018 CGAGACTGGCGGGAAAGTA 59.112 57.895 0.00 0.00 0.00 2.24
5608 5812 2.657237 CGAGACTGGCGGGAAAGT 59.343 61.111 0.00 0.00 0.00 2.66
5609 5813 1.945354 TAGCGAGACTGGCGGGAAAG 61.945 60.000 3.62 0.00 35.00 2.62
5610 5814 1.327690 ATAGCGAGACTGGCGGGAAA 61.328 55.000 3.62 0.00 35.00 3.13
5611 5815 1.735376 GATAGCGAGACTGGCGGGAA 61.735 60.000 3.62 0.00 35.00 3.97
5612 5816 2.123854 ATAGCGAGACTGGCGGGA 60.124 61.111 3.62 0.00 35.00 5.14
5613 5817 2.336809 GATAGCGAGACTGGCGGG 59.663 66.667 3.62 0.00 35.00 6.13
5614 5818 2.050895 CGATAGCGAGACTGGCGG 60.051 66.667 0.00 0.00 40.82 6.13
5665 5869 0.881796 CGTCACTAGAGTGGACTGCA 59.118 55.000 9.73 0.00 45.65 4.41
5673 5877 6.201044 CAGAATTTTGTTCACGTCACTAGAGT 59.799 38.462 0.00 0.00 0.00 3.24
5677 5881 6.912203 TTCAGAATTTTGTTCACGTCACTA 57.088 33.333 0.00 0.00 0.00 2.74
5696 5900 7.914346 GCAAGGAATTCATCTTAGATGTTTCAG 59.086 37.037 25.74 19.77 0.00 3.02
5697 5901 7.394077 TGCAAGGAATTCATCTTAGATGTTTCA 59.606 33.333 25.74 12.59 0.00 2.69
5718 5922 6.486253 TTGCTTATCAAACTAGAGTGCAAG 57.514 37.500 0.00 2.72 33.78 4.01
5721 5925 6.086871 GGTTTTGCTTATCAAACTAGAGTGC 58.913 40.000 0.00 0.00 43.76 4.40
5723 5927 6.770785 TGTGGTTTTGCTTATCAAACTAGAGT 59.229 34.615 0.00 0.00 43.76 3.24
5724 5928 7.078228 GTGTGGTTTTGCTTATCAAACTAGAG 58.922 38.462 0.00 0.00 43.76 2.43
5725 5929 6.016610 GGTGTGGTTTTGCTTATCAAACTAGA 60.017 38.462 0.00 0.00 43.76 2.43
5727 5931 5.594725 TGGTGTGGTTTTGCTTATCAAACTA 59.405 36.000 0.00 0.00 43.76 2.24
5728 5932 4.404073 TGGTGTGGTTTTGCTTATCAAACT 59.596 37.500 0.00 0.00 43.76 2.66
5731 5935 5.543507 AATGGTGTGGTTTTGCTTATCAA 57.456 34.783 0.00 0.00 0.00 2.57
5732 5936 5.543507 AAATGGTGTGGTTTTGCTTATCA 57.456 34.783 0.00 0.00 0.00 2.15
5744 5948 5.720371 TTCTCCAATTGTAAATGGTGTGG 57.280 39.130 4.43 0.00 37.94 4.17
5761 5965 6.908870 ATTCTTTTTGCACTTTGTTTCTCC 57.091 33.333 0.00 0.00 0.00 3.71
5762 5966 9.468532 AGATATTCTTTTTGCACTTTGTTTCTC 57.531 29.630 0.00 0.00 0.00 2.87
5784 5988 7.851228 TGCTTGTCCTTCTTTTCTCATAGATA 58.149 34.615 0.00 0.00 0.00 1.98
5801 6005 1.940613 GATTGGGTCGTATGCTTGTCC 59.059 52.381 0.00 0.00 0.00 4.02
5802 6006 1.593006 CGATTGGGTCGTATGCTTGTC 59.407 52.381 0.00 0.00 45.19 3.18
5813 6020 1.527311 GCGCTAAGATTCGATTGGGTC 59.473 52.381 0.00 0.00 0.00 4.46
5815 6022 1.581934 TGCGCTAAGATTCGATTGGG 58.418 50.000 9.73 0.00 0.00 4.12
5821 6028 1.328680 ACTGCAATGCGCTAAGATTCG 59.671 47.619 9.73 0.00 43.06 3.34
5841 6048 4.322650 GGTTCAATGCTCAAAATAGGCCAA 60.323 41.667 5.01 0.00 0.00 4.52
5850 6057 3.316029 CAGTGTCTGGTTCAATGCTCAAA 59.684 43.478 0.00 0.00 0.00 2.69
5851 6058 2.880268 CAGTGTCTGGTTCAATGCTCAA 59.120 45.455 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.