Multiple sequence alignment - TraesCS1A01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G360900 chr1A 100.000 3808 0 0 1 3808 541896707 541892900 0.000000e+00 7033.0
1 TraesCS1A01G360900 chr1D 93.401 2758 95 31 477 3186 445643271 445640553 0.000000e+00 4004.0
2 TraesCS1A01G360900 chr1D 95.734 586 10 5 3187 3762 445640509 445639929 0.000000e+00 929.0
3 TraesCS1A01G360900 chr1B 92.139 2048 97 36 1187 3186 608996297 608994266 0.000000e+00 2832.0
4 TraesCS1A01G360900 chr1B 92.961 483 17 7 679 1154 608996758 608996286 0.000000e+00 688.0
5 TraesCS1A01G360900 chr1B 90.213 470 28 7 3187 3640 608994222 608993755 7.040000e-167 597.0
6 TraesCS1A01G360900 chr1B 85.802 162 6 6 514 674 609002071 609001926 5.090000e-34 156.0
7 TraesCS1A01G360900 chr7B 87.321 489 44 11 1204 1686 679683949 679683473 9.300000e-151 544.0
8 TraesCS1A01G360900 chr7B 85.458 502 55 11 1203 1686 713099666 713100167 1.220000e-139 507.0
9 TraesCS1A01G360900 chr7B 89.212 241 24 1 1193 1431 70243723 70243963 2.220000e-77 300.0
10 TraesCS1A01G360900 chr7B 92.029 138 11 0 2431 2568 679682716 679682579 1.080000e-45 195.0
11 TraesCS1A01G360900 chr7D 85.857 502 53 11 1203 1686 618679794 618680295 5.640000e-143 518.0
12 TraesCS1A01G360900 chr7D 85.714 259 25 8 1436 1686 110891116 110891370 2.920000e-66 263.0
13 TraesCS1A01G360900 chr7D 81.507 146 27 0 2421 2566 599883048 599882903 1.860000e-23 121.0
14 TraesCS1A01G360900 chr7A 85.658 509 48 12 1195 1686 692056346 692055846 2.620000e-141 512.0
15 TraesCS1A01G360900 chr7A 84.660 515 59 13 1191 1686 712307255 712307768 2.640000e-136 496.0
16 TraesCS1A01G360900 chr7A 75.905 718 105 36 2179 2840 692055272 692054567 4.780000e-79 305.0
17 TraesCS1A01G360900 chr7A 85.714 259 25 8 1436 1686 116019322 116019576 2.920000e-66 263.0
18 TraesCS1A01G360900 chr7A 82.993 147 25 0 2420 2566 692128873 692128727 2.390000e-27 134.0
19 TraesCS1A01G360900 chr7A 93.750 48 2 1 2290 2337 120875373 120875327 1.900000e-08 71.3
20 TraesCS1A01G360900 chrUn 91.228 228 20 0 1204 1431 16612578 16612805 1.030000e-80 311.0
21 TraesCS1A01G360900 chrUn 85.882 255 25 9 1439 1686 266170708 266170458 1.050000e-65 261.0
22 TraesCS1A01G360900 chrUn 79.487 156 20 7 2429 2582 87844105 87844250 2.420000e-17 100.0
23 TraesCS1A01G360900 chrUn 79.487 156 20 7 2429 2582 213329194 213329339 2.420000e-17 100.0
24 TraesCS1A01G360900 chr2D 86.047 258 25 8 1436 1686 15264928 15265181 2.260000e-67 267.0
25 TraesCS1A01G360900 chr2B 90.148 203 16 3 1488 1686 27356408 27356610 1.050000e-65 261.0
26 TraesCS1A01G360900 chr2B 91.667 48 2 2 2293 2340 188156867 188156822 8.830000e-07 65.8
27 TraesCS1A01G360900 chr2B 91.667 48 3 1 2290 2337 343517213 343517167 8.830000e-07 65.8
28 TraesCS1A01G360900 chr2B 97.222 36 1 0 271 306 662897060 662897095 1.140000e-05 62.1
29 TraesCS1A01G360900 chr2B 91.111 45 3 1 2293 2337 188028719 188028676 4.110000e-05 60.2
30 TraesCS1A01G360900 chr2A 85.214 257 25 9 1439 1686 20365928 20366180 6.310000e-63 252.0
31 TraesCS1A01G360900 chr2A 84.177 158 20 3 2420 2572 20552247 20552404 8.520000e-32 148.0
32 TraesCS1A01G360900 chr5A 79.630 162 30 3 21 181 395083211 395083370 3.110000e-21 113.0
33 TraesCS1A01G360900 chr6D 93.750 48 2 1 2290 2337 57917067 57917021 1.900000e-08 71.3
34 TraesCS1A01G360900 chr6D 93.750 48 2 1 2290 2337 318034537 318034491 1.900000e-08 71.3
35 TraesCS1A01G360900 chr3D 92.157 51 3 1 2287 2337 308583234 308583283 1.900000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G360900 chr1A 541892900 541896707 3807 True 7033.000000 7033 100.0000 1 3808 1 chr1A.!!$R1 3807
1 TraesCS1A01G360900 chr1D 445639929 445643271 3342 True 2466.500000 4004 94.5675 477 3762 2 chr1D.!!$R1 3285
2 TraesCS1A01G360900 chr1B 608993755 608996758 3003 True 1372.333333 2832 91.7710 679 3640 3 chr1B.!!$R2 2961
3 TraesCS1A01G360900 chr7B 713099666 713100167 501 False 507.000000 507 85.4580 1203 1686 1 chr7B.!!$F2 483
4 TraesCS1A01G360900 chr7B 679682579 679683949 1370 True 369.500000 544 89.6750 1204 2568 2 chr7B.!!$R1 1364
5 TraesCS1A01G360900 chr7D 618679794 618680295 501 False 518.000000 518 85.8570 1203 1686 1 chr7D.!!$F2 483
6 TraesCS1A01G360900 chr7A 712307255 712307768 513 False 496.000000 496 84.6600 1191 1686 1 chr7A.!!$F2 495
7 TraesCS1A01G360900 chr7A 692054567 692056346 1779 True 408.500000 512 80.7815 1195 2840 2 chr7A.!!$R3 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.035056 ATTCTTTCTGCTCCGGGGTG 60.035 55.0 1.62 0.00 0.00 4.61 F
333 334 0.037419 GCATGGCAACCCGACAATTT 60.037 50.0 0.00 0.00 34.96 1.82 F
401 402 0.250166 ACCTCGCGCCAACTAAAGTT 60.250 50.0 0.00 0.00 39.12 2.66 F
429 430 0.250467 AACGTTCAGGCTGTCATGCT 60.250 50.0 15.27 0.00 0.00 3.79 F
430 431 0.250467 ACGTTCAGGCTGTCATGCTT 60.250 50.0 15.27 0.00 0.00 3.91 F
1504 1561 0.324552 AGCTAACCCATGCATGCCAA 60.325 50.0 21.69 5.23 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1215 0.979665 AGCATCAGATCCATACCCCG 59.020 55.000 0.0 0.0 0.00 5.73 R
2271 2631 0.394216 CGGGATGGAGCCAATGTTGA 60.394 55.000 0.0 0.0 0.00 3.18 R
2300 2666 2.367567 GTTGAACTCTACACCTGGACCA 59.632 50.000 0.0 0.0 0.00 4.02 R
2408 2782 3.126171 GCACAATATTACGTTCACCAGCA 59.874 43.478 0.0 0.0 0.00 4.41 R
2409 2783 3.374058 AGCACAATATTACGTTCACCAGC 59.626 43.478 0.0 0.0 0.00 4.85 R
3064 3478 0.886043 TCATGCATATCACGCAGGCC 60.886 55.000 0.0 0.0 43.88 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.893958 CAACACCTCATACATACTCAAGAC 57.106 41.667 0.00 0.00 0.00 3.01
24 25 5.599999 ACACCTCATACATACTCAAGACC 57.400 43.478 0.00 0.00 0.00 3.85
25 26 4.098044 ACACCTCATACATACTCAAGACCG 59.902 45.833 0.00 0.00 0.00 4.79
26 27 3.068307 ACCTCATACATACTCAAGACCGC 59.932 47.826 0.00 0.00 0.00 5.68
27 28 3.319405 CCTCATACATACTCAAGACCGCT 59.681 47.826 0.00 0.00 0.00 5.52
28 29 4.541779 CTCATACATACTCAAGACCGCTC 58.458 47.826 0.00 0.00 0.00 5.03
29 30 3.951680 TCATACATACTCAAGACCGCTCA 59.048 43.478 0.00 0.00 0.00 4.26
30 31 4.584743 TCATACATACTCAAGACCGCTCAT 59.415 41.667 0.00 0.00 0.00 2.90
31 32 3.444703 ACATACTCAAGACCGCTCATC 57.555 47.619 0.00 0.00 0.00 2.92
32 33 3.027412 ACATACTCAAGACCGCTCATCT 58.973 45.455 0.00 0.00 0.00 2.90
33 34 3.181482 ACATACTCAAGACCGCTCATCTG 60.181 47.826 0.00 0.00 0.00 2.90
34 35 1.261480 ACTCAAGACCGCTCATCTGT 58.739 50.000 0.00 0.00 0.00 3.41
35 36 1.620819 ACTCAAGACCGCTCATCTGTT 59.379 47.619 0.00 0.00 0.00 3.16
36 37 1.998315 CTCAAGACCGCTCATCTGTTG 59.002 52.381 0.00 0.00 0.00 3.33
37 38 1.081892 CAAGACCGCTCATCTGTTGG 58.918 55.000 0.00 0.00 0.00 3.77
38 39 0.687354 AAGACCGCTCATCTGTTGGT 59.313 50.000 0.00 0.00 35.14 3.67
39 40 0.036952 AGACCGCTCATCTGTTGGTG 60.037 55.000 0.00 0.00 31.86 4.17
40 41 1.639298 GACCGCTCATCTGTTGGTGC 61.639 60.000 0.00 0.00 31.86 5.01
41 42 1.672030 CCGCTCATCTGTTGGTGCA 60.672 57.895 0.00 0.00 0.00 4.57
42 43 1.642037 CCGCTCATCTGTTGGTGCAG 61.642 60.000 0.00 0.00 37.81 4.41
43 44 0.952497 CGCTCATCTGTTGGTGCAGT 60.952 55.000 0.00 0.00 37.70 4.40
44 45 0.520404 GCTCATCTGTTGGTGCAGTG 59.480 55.000 0.00 0.00 37.70 3.66
45 46 1.162698 CTCATCTGTTGGTGCAGTGG 58.837 55.000 0.00 0.00 37.70 4.00
46 47 0.473755 TCATCTGTTGGTGCAGTGGT 59.526 50.000 0.00 0.00 37.70 4.16
47 48 0.594602 CATCTGTTGGTGCAGTGGTG 59.405 55.000 0.00 0.00 37.70 4.17
48 49 0.538057 ATCTGTTGGTGCAGTGGTGG 60.538 55.000 0.00 0.00 37.70 4.61
49 50 1.453745 CTGTTGGTGCAGTGGTGGT 60.454 57.895 0.00 0.00 0.00 4.16
50 51 1.727511 CTGTTGGTGCAGTGGTGGTG 61.728 60.000 0.00 0.00 0.00 4.17
51 52 2.123939 TTGGTGCAGTGGTGGTGG 60.124 61.111 0.00 0.00 0.00 4.61
52 53 2.684499 TTGGTGCAGTGGTGGTGGA 61.684 57.895 0.00 0.00 0.00 4.02
53 54 2.594592 GGTGCAGTGGTGGTGGAC 60.595 66.667 0.00 0.00 35.64 4.02
54 55 2.191908 GTGCAGTGGTGGTGGACA 59.808 61.111 0.00 0.00 36.35 4.02
55 56 1.228245 GTGCAGTGGTGGTGGACAT 60.228 57.895 0.00 0.00 36.35 3.06
56 57 0.823356 GTGCAGTGGTGGTGGACATT 60.823 55.000 0.00 0.00 36.35 2.71
57 58 0.767998 TGCAGTGGTGGTGGACATTA 59.232 50.000 0.00 0.00 0.00 1.90
58 59 1.271325 TGCAGTGGTGGTGGACATTAG 60.271 52.381 0.00 0.00 0.00 1.73
59 60 1.950484 GCAGTGGTGGTGGACATTAGG 60.950 57.143 0.00 0.00 0.00 2.69
60 61 0.328258 AGTGGTGGTGGACATTAGGC 59.672 55.000 0.00 0.00 0.00 3.93
61 62 0.037590 GTGGTGGTGGACATTAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
62 63 0.998928 TGGTGGTGGACATTAGGCAT 59.001 50.000 0.00 0.00 0.00 4.40
63 64 1.340893 TGGTGGTGGACATTAGGCATG 60.341 52.381 0.00 0.00 39.07 4.06
65 66 2.092646 GGTGGTGGACATTAGGCATGTA 60.093 50.000 0.00 0.00 46.96 2.29
66 67 3.206150 GTGGTGGACATTAGGCATGTAG 58.794 50.000 0.00 0.00 46.96 2.74
67 68 2.222027 GGTGGACATTAGGCATGTAGC 58.778 52.381 0.00 0.00 46.96 3.58
68 69 2.421388 GGTGGACATTAGGCATGTAGCA 60.421 50.000 0.00 0.00 46.96 3.49
69 70 3.480470 GTGGACATTAGGCATGTAGCAT 58.520 45.455 0.00 0.00 46.96 3.79
70 71 3.885297 GTGGACATTAGGCATGTAGCATT 59.115 43.478 0.00 0.00 46.96 3.56
71 72 4.023707 GTGGACATTAGGCATGTAGCATTC 60.024 45.833 0.00 0.00 46.96 2.67
72 73 3.187227 GGACATTAGGCATGTAGCATTCG 59.813 47.826 0.00 0.00 46.96 3.34
73 74 4.058124 GACATTAGGCATGTAGCATTCGA 58.942 43.478 0.00 0.00 46.96 3.71
74 75 3.809832 ACATTAGGCATGTAGCATTCGAC 59.190 43.478 0.00 0.00 45.00 4.20
75 76 4.443457 ACATTAGGCATGTAGCATTCGACT 60.443 41.667 0.00 0.00 45.00 4.18
76 77 5.916267 ACATTAGGCATGTAGCATTCGACTT 60.916 40.000 0.00 0.00 45.00 3.01
77 78 7.669980 ACATTAGGCATGTAGCATTCGACTTC 61.670 42.308 0.00 0.00 45.00 3.01
78 79 2.635141 GCATGTAGCATTCGACTTCG 57.365 50.000 0.00 0.00 44.79 3.79
79 80 2.193447 GCATGTAGCATTCGACTTCGA 58.807 47.619 0.00 0.00 44.79 3.71
80 81 2.034507 GCATGTAGCATTCGACTTCGAC 60.035 50.000 0.00 0.00 45.57 4.20
81 82 4.279808 GCATGTAGCATTCGACTTCGACT 61.280 47.826 0.00 0.00 45.57 4.18
82 83 5.724390 GCATGTAGCATTCGACTTCGACTT 61.724 45.833 0.00 0.00 45.57 3.01
83 84 7.666622 GCATGTAGCATTCGACTTCGACTTG 62.667 48.000 0.00 3.86 45.57 3.16
88 89 3.859650 TCGACTTCGACTTGTGGTC 57.140 52.632 0.00 0.00 44.22 4.02
89 90 1.315690 TCGACTTCGACTTGTGGTCT 58.684 50.000 0.00 0.00 44.22 3.85
90 91 2.497138 TCGACTTCGACTTGTGGTCTA 58.503 47.619 0.00 0.00 44.22 2.59
91 92 2.483106 TCGACTTCGACTTGTGGTCTAG 59.517 50.000 0.00 0.00 44.22 2.43
92 93 2.483106 CGACTTCGACTTGTGGTCTAGA 59.517 50.000 0.00 0.00 42.44 2.43
93 94 3.058432 CGACTTCGACTTGTGGTCTAGAA 60.058 47.826 0.00 0.00 42.44 2.10
94 95 4.379603 CGACTTCGACTTGTGGTCTAGAAT 60.380 45.833 0.00 0.00 42.44 2.40
95 96 5.061920 ACTTCGACTTGTGGTCTAGAATC 57.938 43.478 0.00 0.00 42.44 2.52
96 97 4.523173 ACTTCGACTTGTGGTCTAGAATCA 59.477 41.667 0.00 0.00 42.44 2.57
97 98 4.436242 TCGACTTGTGGTCTAGAATCAC 57.564 45.455 16.34 16.34 42.44 3.06
98 99 3.824443 TCGACTTGTGGTCTAGAATCACA 59.176 43.478 20.00 20.00 42.44 3.58
99 100 4.279922 TCGACTTGTGGTCTAGAATCACAA 59.720 41.667 27.16 27.16 45.47 3.33
100 101 5.047306 TCGACTTGTGGTCTAGAATCACAAT 60.047 40.000 28.22 21.68 46.13 2.71
101 102 5.639506 CGACTTGTGGTCTAGAATCACAATT 59.360 40.000 28.22 25.02 46.13 2.32
102 103 6.401474 CGACTTGTGGTCTAGAATCACAATTG 60.401 42.308 28.22 22.84 46.13 2.32
103 104 6.299141 ACTTGTGGTCTAGAATCACAATTGT 58.701 36.000 28.22 23.26 46.13 2.71
104 105 6.428159 ACTTGTGGTCTAGAATCACAATTGTC 59.572 38.462 28.22 0.00 46.13 3.18
105 106 4.929211 TGTGGTCTAGAATCACAATTGTCG 59.071 41.667 21.03 4.95 38.30 4.35
106 107 4.330074 GTGGTCTAGAATCACAATTGTCGG 59.670 45.833 8.48 0.00 0.00 4.79
107 108 3.309954 GGTCTAGAATCACAATTGTCGGC 59.690 47.826 8.48 0.00 0.00 5.54
108 109 3.932710 GTCTAGAATCACAATTGTCGGCA 59.067 43.478 8.48 0.00 0.00 5.69
109 110 4.572389 GTCTAGAATCACAATTGTCGGCAT 59.428 41.667 8.48 0.00 0.00 4.40
110 111 5.753438 GTCTAGAATCACAATTGTCGGCATA 59.247 40.000 8.48 0.00 0.00 3.14
111 112 6.425114 GTCTAGAATCACAATTGTCGGCATAT 59.575 38.462 8.48 0.00 0.00 1.78
112 113 6.992123 TCTAGAATCACAATTGTCGGCATATT 59.008 34.615 8.48 2.29 0.00 1.28
113 114 8.147704 TCTAGAATCACAATTGTCGGCATATTA 58.852 33.333 8.48 0.00 0.00 0.98
114 115 7.566760 AGAATCACAATTGTCGGCATATTAA 57.433 32.000 8.48 0.00 0.00 1.40
115 116 8.169977 AGAATCACAATTGTCGGCATATTAAT 57.830 30.769 8.48 0.00 0.00 1.40
116 117 8.077991 AGAATCACAATTGTCGGCATATTAATG 58.922 33.333 8.48 0.00 36.09 1.90
117 118 6.691754 TCACAATTGTCGGCATATTAATGT 57.308 33.333 8.48 0.00 35.38 2.71
118 119 7.094508 TCACAATTGTCGGCATATTAATGTT 57.905 32.000 8.48 0.00 35.38 2.71
119 120 7.192913 TCACAATTGTCGGCATATTAATGTTC 58.807 34.615 8.48 0.00 35.38 3.18
120 121 6.417635 CACAATTGTCGGCATATTAATGTTCC 59.582 38.462 8.48 0.00 35.38 3.62
121 122 6.321181 ACAATTGTCGGCATATTAATGTTCCT 59.679 34.615 4.92 0.00 35.38 3.36
122 123 5.749596 TTGTCGGCATATTAATGTTCCTG 57.250 39.130 0.00 0.00 35.38 3.86
123 124 3.563808 TGTCGGCATATTAATGTTCCTGC 59.436 43.478 0.00 0.00 35.38 4.85
124 125 3.815401 GTCGGCATATTAATGTTCCTGCT 59.185 43.478 0.00 0.00 35.38 4.24
125 126 4.275936 GTCGGCATATTAATGTTCCTGCTT 59.724 41.667 0.00 0.00 35.38 3.91
126 127 5.468746 GTCGGCATATTAATGTTCCTGCTTA 59.531 40.000 0.00 0.00 35.38 3.09
127 128 6.149474 GTCGGCATATTAATGTTCCTGCTTAT 59.851 38.462 0.00 0.00 35.38 1.73
128 129 6.714810 TCGGCATATTAATGTTCCTGCTTATT 59.285 34.615 0.00 0.00 35.38 1.40
129 130 7.230510 TCGGCATATTAATGTTCCTGCTTATTT 59.769 33.333 0.00 0.00 35.38 1.40
130 131 7.326789 CGGCATATTAATGTTCCTGCTTATTTG 59.673 37.037 0.00 0.00 35.38 2.32
131 132 8.143835 GGCATATTAATGTTCCTGCTTATTTGT 58.856 33.333 0.00 0.00 35.38 2.83
132 133 9.533253 GCATATTAATGTTCCTGCTTATTTGTT 57.467 29.630 0.00 0.00 35.38 2.83
136 137 6.840780 AATGTTCCTGCTTATTTGTTAGCT 57.159 33.333 0.00 0.00 38.22 3.32
137 138 7.938140 AATGTTCCTGCTTATTTGTTAGCTA 57.062 32.000 0.00 0.00 38.22 3.32
138 139 7.938140 ATGTTCCTGCTTATTTGTTAGCTAA 57.062 32.000 0.86 0.86 38.22 3.09
139 140 7.753309 TGTTCCTGCTTATTTGTTAGCTAAA 57.247 32.000 7.99 0.00 38.22 1.85
140 141 8.348285 TGTTCCTGCTTATTTGTTAGCTAAAT 57.652 30.769 7.99 2.86 38.22 1.40
141 142 8.458843 TGTTCCTGCTTATTTGTTAGCTAAATC 58.541 33.333 7.99 0.00 38.22 2.17
142 143 8.678199 GTTCCTGCTTATTTGTTAGCTAAATCT 58.322 33.333 7.99 0.00 38.22 2.40
143 144 8.807948 TCCTGCTTATTTGTTAGCTAAATCTT 57.192 30.769 7.99 0.00 38.22 2.40
144 145 9.899661 TCCTGCTTATTTGTTAGCTAAATCTTA 57.100 29.630 7.99 0.00 38.22 2.10
154 155 9.672673 TTGTTAGCTAAATCTTATTTGAGCTCT 57.327 29.630 16.19 0.00 40.58 4.09
170 171 7.704578 TTGAGCTCTATAGTAGTCTTTGTGT 57.295 36.000 16.19 0.00 0.00 3.72
171 172 7.704578 TGAGCTCTATAGTAGTCTTTGTGTT 57.295 36.000 16.19 0.00 0.00 3.32
172 173 8.803397 TGAGCTCTATAGTAGTCTTTGTGTTA 57.197 34.615 16.19 0.00 0.00 2.41
173 174 9.409918 TGAGCTCTATAGTAGTCTTTGTGTTAT 57.590 33.333 16.19 0.00 0.00 1.89
182 183 8.089115 AGTAGTCTTTGTGTTATTCTTTCTGC 57.911 34.615 0.00 0.00 0.00 4.26
183 184 7.934120 AGTAGTCTTTGTGTTATTCTTTCTGCT 59.066 33.333 0.00 0.00 0.00 4.24
184 185 7.195839 AGTCTTTGTGTTATTCTTTCTGCTC 57.804 36.000 0.00 0.00 0.00 4.26
185 186 6.205658 AGTCTTTGTGTTATTCTTTCTGCTCC 59.794 38.462 0.00 0.00 0.00 4.70
186 187 5.179368 TCTTTGTGTTATTCTTTCTGCTCCG 59.821 40.000 0.00 0.00 0.00 4.63
187 188 3.334691 TGTGTTATTCTTTCTGCTCCGG 58.665 45.455 0.00 0.00 0.00 5.14
188 189 2.678336 GTGTTATTCTTTCTGCTCCGGG 59.322 50.000 0.00 0.00 0.00 5.73
189 190 2.289565 GTTATTCTTTCTGCTCCGGGG 58.710 52.381 0.00 0.00 0.00 5.73
190 191 1.580059 TATTCTTTCTGCTCCGGGGT 58.420 50.000 1.62 0.00 0.00 4.95
191 192 0.035056 ATTCTTTCTGCTCCGGGGTG 60.035 55.000 1.62 0.00 0.00 4.61
192 193 1.415672 TTCTTTCTGCTCCGGGGTGT 61.416 55.000 1.62 0.00 0.00 4.16
193 194 0.543410 TCTTTCTGCTCCGGGGTGTA 60.543 55.000 1.62 0.00 0.00 2.90
194 195 0.541863 CTTTCTGCTCCGGGGTGTAT 59.458 55.000 1.62 0.00 0.00 2.29
195 196 0.539986 TTTCTGCTCCGGGGTGTATC 59.460 55.000 1.62 0.00 0.00 2.24
196 197 0.325296 TTCTGCTCCGGGGTGTATCT 60.325 55.000 1.62 0.00 0.00 1.98
197 198 0.554305 TCTGCTCCGGGGTGTATCTA 59.446 55.000 1.62 0.00 0.00 1.98
198 199 1.063492 TCTGCTCCGGGGTGTATCTAA 60.063 52.381 1.62 0.00 0.00 2.10
199 200 1.760613 CTGCTCCGGGGTGTATCTAAA 59.239 52.381 1.62 0.00 0.00 1.85
200 201 2.169769 CTGCTCCGGGGTGTATCTAAAA 59.830 50.000 1.62 0.00 0.00 1.52
201 202 2.169769 TGCTCCGGGGTGTATCTAAAAG 59.830 50.000 1.62 0.00 0.00 2.27
202 203 2.433239 GCTCCGGGGTGTATCTAAAAGA 59.567 50.000 1.62 0.00 0.00 2.52
203 204 3.740452 GCTCCGGGGTGTATCTAAAAGAC 60.740 52.174 1.62 0.00 0.00 3.01
204 205 3.705072 CTCCGGGGTGTATCTAAAAGACT 59.295 47.826 0.00 0.00 0.00 3.24
205 206 4.870636 TCCGGGGTGTATCTAAAAGACTA 58.129 43.478 0.00 0.00 0.00 2.59
206 207 5.461327 TCCGGGGTGTATCTAAAAGACTAT 58.539 41.667 0.00 0.00 0.00 2.12
207 208 5.303589 TCCGGGGTGTATCTAAAAGACTATG 59.696 44.000 0.00 0.00 0.00 2.23
208 209 5.070047 CCGGGGTGTATCTAAAAGACTATGT 59.930 44.000 0.00 0.00 0.00 2.29
209 210 6.266103 CCGGGGTGTATCTAAAAGACTATGTA 59.734 42.308 0.00 0.00 0.00 2.29
210 211 7.201938 CCGGGGTGTATCTAAAAGACTATGTAA 60.202 40.741 0.00 0.00 0.00 2.41
211 212 8.365647 CGGGGTGTATCTAAAAGACTATGTAAT 58.634 37.037 0.00 0.00 0.00 1.89
287 288 8.596271 TCGATAATATGTTCGGATTTTAAGCA 57.404 30.769 7.48 0.00 36.08 3.91
288 289 9.214957 TCGATAATATGTTCGGATTTTAAGCAT 57.785 29.630 7.48 0.00 36.08 3.79
289 290 9.265938 CGATAATATGTTCGGATTTTAAGCATG 57.734 33.333 0.00 0.00 0.00 4.06
290 291 9.559958 GATAATATGTTCGGATTTTAAGCATGG 57.440 33.333 0.00 0.00 0.00 3.66
291 292 3.502191 TGTTCGGATTTTAAGCATGGC 57.498 42.857 0.00 0.00 0.00 4.40
292 293 2.822561 TGTTCGGATTTTAAGCATGGCA 59.177 40.909 0.00 0.00 0.00 4.92
293 294 3.256879 TGTTCGGATTTTAAGCATGGCAA 59.743 39.130 0.00 0.00 0.00 4.52
294 295 3.502191 TCGGATTTTAAGCATGGCAAC 57.498 42.857 0.00 0.00 0.00 4.17
295 296 2.165437 TCGGATTTTAAGCATGGCAACC 59.835 45.455 0.00 0.00 0.00 3.77
296 297 2.738321 CGGATTTTAAGCATGGCAACCC 60.738 50.000 0.00 0.00 0.00 4.11
298 299 3.524541 GATTTTAAGCATGGCAACCCAG 58.475 45.455 0.00 0.00 46.24 4.45
299 300 2.300956 TTTAAGCATGGCAACCCAGA 57.699 45.000 0.00 0.00 46.24 3.86
300 301 1.544724 TTAAGCATGGCAACCCAGAC 58.455 50.000 0.00 0.00 46.24 3.51
301 302 0.676466 TAAGCATGGCAACCCAGACG 60.676 55.000 0.00 0.00 46.24 4.18
302 303 2.672996 GCATGGCAACCCAGACGT 60.673 61.111 0.00 0.00 46.24 4.34
303 304 2.268076 GCATGGCAACCCAGACGTT 61.268 57.895 0.00 0.00 46.24 3.99
304 305 1.805428 GCATGGCAACCCAGACGTTT 61.805 55.000 0.00 0.00 46.24 3.60
305 306 0.673437 CATGGCAACCCAGACGTTTT 59.327 50.000 0.00 0.00 46.24 2.43
306 307 0.673437 ATGGCAACCCAGACGTTTTG 59.327 50.000 0.00 0.00 46.24 2.44
307 308 0.394488 TGGCAACCCAGACGTTTTGA 60.394 50.000 0.00 0.00 35.79 2.69
308 309 0.958822 GGCAACCCAGACGTTTTGAT 59.041 50.000 0.00 0.00 0.00 2.57
309 310 1.339929 GGCAACCCAGACGTTTTGATT 59.660 47.619 0.00 0.00 0.00 2.57
310 311 2.223947 GGCAACCCAGACGTTTTGATTT 60.224 45.455 0.00 0.00 0.00 2.17
311 312 3.453424 GCAACCCAGACGTTTTGATTTT 58.547 40.909 0.00 0.00 0.00 1.82
312 313 4.500035 GGCAACCCAGACGTTTTGATTTTA 60.500 41.667 0.00 0.00 0.00 1.52
313 314 5.044558 GCAACCCAGACGTTTTGATTTTAA 58.955 37.500 0.00 0.00 0.00 1.52
314 315 5.174943 GCAACCCAGACGTTTTGATTTTAAG 59.825 40.000 0.00 0.00 0.00 1.85
315 316 4.866921 ACCCAGACGTTTTGATTTTAAGC 58.133 39.130 0.00 0.00 0.00 3.09
316 317 4.339814 ACCCAGACGTTTTGATTTTAAGCA 59.660 37.500 0.00 0.00 0.00 3.91
317 318 5.010617 ACCCAGACGTTTTGATTTTAAGCAT 59.989 36.000 0.00 0.00 0.00 3.79
318 319 5.345741 CCCAGACGTTTTGATTTTAAGCATG 59.654 40.000 0.00 0.00 0.00 4.06
319 320 5.345741 CCAGACGTTTTGATTTTAAGCATGG 59.654 40.000 0.00 0.00 0.00 3.66
320 321 4.923281 AGACGTTTTGATTTTAAGCATGGC 59.077 37.500 0.00 0.00 0.00 4.40
321 322 4.626042 ACGTTTTGATTTTAAGCATGGCA 58.374 34.783 0.00 0.00 0.00 4.92
322 323 5.053145 ACGTTTTGATTTTAAGCATGGCAA 58.947 33.333 0.00 0.00 0.00 4.52
323 324 5.050431 ACGTTTTGATTTTAAGCATGGCAAC 60.050 36.000 0.00 0.00 0.00 4.17
324 325 5.614449 CGTTTTGATTTTAAGCATGGCAACC 60.614 40.000 0.00 0.00 0.00 3.77
325 326 3.608316 TGATTTTAAGCATGGCAACCC 57.392 42.857 0.00 0.00 0.00 4.11
326 327 2.094286 TGATTTTAAGCATGGCAACCCG 60.094 45.455 0.00 0.00 0.00 5.28
327 328 1.621992 TTTTAAGCATGGCAACCCGA 58.378 45.000 0.00 0.00 0.00 5.14
328 329 0.885196 TTTAAGCATGGCAACCCGAC 59.115 50.000 0.00 0.00 0.00 4.79
329 330 0.250945 TTAAGCATGGCAACCCGACA 60.251 50.000 0.00 0.00 36.70 4.35
330 331 0.250945 TAAGCATGGCAACCCGACAA 60.251 50.000 0.00 0.00 34.96 3.18
331 332 0.899717 AAGCATGGCAACCCGACAAT 60.900 50.000 0.00 0.00 34.96 2.71
332 333 0.899717 AGCATGGCAACCCGACAATT 60.900 50.000 0.00 0.00 34.96 2.32
333 334 0.037419 GCATGGCAACCCGACAATTT 60.037 50.000 0.00 0.00 34.96 1.82
334 335 1.607767 GCATGGCAACCCGACAATTTT 60.608 47.619 0.00 0.00 34.96 1.82
335 336 2.765122 CATGGCAACCCGACAATTTTT 58.235 42.857 0.00 0.00 34.96 1.94
336 337 2.517650 TGGCAACCCGACAATTTTTC 57.482 45.000 0.00 0.00 0.00 2.29
337 338 1.757118 TGGCAACCCGACAATTTTTCA 59.243 42.857 0.00 0.00 0.00 2.69
338 339 2.366916 TGGCAACCCGACAATTTTTCAT 59.633 40.909 0.00 0.00 0.00 2.57
339 340 2.736192 GGCAACCCGACAATTTTTCATG 59.264 45.455 0.00 0.00 0.00 3.07
340 341 3.553922 GGCAACCCGACAATTTTTCATGA 60.554 43.478 0.00 0.00 0.00 3.07
341 342 3.428534 GCAACCCGACAATTTTTCATGAC 59.571 43.478 0.00 0.00 0.00 3.06
342 343 4.615949 CAACCCGACAATTTTTCATGACA 58.384 39.130 0.00 0.00 0.00 3.58
343 344 4.927978 ACCCGACAATTTTTCATGACAA 57.072 36.364 0.00 0.00 0.00 3.18
344 345 4.616953 ACCCGACAATTTTTCATGACAAC 58.383 39.130 0.00 0.00 0.00 3.32
345 346 4.340950 ACCCGACAATTTTTCATGACAACT 59.659 37.500 0.00 0.00 0.00 3.16
346 347 5.163457 ACCCGACAATTTTTCATGACAACTT 60.163 36.000 0.00 0.00 0.00 2.66
347 348 5.752955 CCCGACAATTTTTCATGACAACTTT 59.247 36.000 0.00 0.00 0.00 2.66
348 349 6.920758 CCCGACAATTTTTCATGACAACTTTA 59.079 34.615 0.00 0.00 0.00 1.85
349 350 7.114811 CCCGACAATTTTTCATGACAACTTTAG 59.885 37.037 0.00 0.00 0.00 1.85
350 351 7.860373 CCGACAATTTTTCATGACAACTTTAGA 59.140 33.333 0.00 0.00 0.00 2.10
351 352 9.232082 CGACAATTTTTCATGACAACTTTAGAA 57.768 29.630 0.00 0.00 0.00 2.10
357 358 7.851822 TTTCATGACAACTTTAGAAAATCGC 57.148 32.000 0.00 0.00 0.00 4.58
358 359 5.938322 TCATGACAACTTTAGAAAATCGCC 58.062 37.500 0.00 0.00 0.00 5.54
359 360 5.471797 TCATGACAACTTTAGAAAATCGCCA 59.528 36.000 0.00 0.00 0.00 5.69
360 361 5.957842 TGACAACTTTAGAAAATCGCCAT 57.042 34.783 0.00 0.00 0.00 4.40
361 362 5.698832 TGACAACTTTAGAAAATCGCCATG 58.301 37.500 0.00 0.00 0.00 3.66
362 363 5.240623 TGACAACTTTAGAAAATCGCCATGT 59.759 36.000 0.00 0.00 0.00 3.21
363 364 6.084326 ACAACTTTAGAAAATCGCCATGTT 57.916 33.333 0.00 0.00 0.00 2.71
364 365 6.512297 ACAACTTTAGAAAATCGCCATGTTT 58.488 32.000 0.00 0.00 0.00 2.83
365 366 6.983890 ACAACTTTAGAAAATCGCCATGTTTT 59.016 30.769 0.00 0.00 0.00 2.43
366 367 8.138712 ACAACTTTAGAAAATCGCCATGTTTTA 58.861 29.630 0.00 0.00 0.00 1.52
367 368 8.424731 CAACTTTAGAAAATCGCCATGTTTTAC 58.575 33.333 0.00 0.00 0.00 2.01
368 369 7.088272 ACTTTAGAAAATCGCCATGTTTTACC 58.912 34.615 0.00 0.00 0.00 2.85
369 370 6.576662 TTAGAAAATCGCCATGTTTTACCA 57.423 33.333 0.00 0.00 0.00 3.25
370 371 5.461032 AGAAAATCGCCATGTTTTACCAA 57.539 34.783 0.00 0.00 0.00 3.67
371 372 5.227152 AGAAAATCGCCATGTTTTACCAAC 58.773 37.500 0.00 0.00 0.00 3.77
372 373 4.864704 AAATCGCCATGTTTTACCAACT 57.135 36.364 0.00 0.00 0.00 3.16
373 374 5.968528 AAATCGCCATGTTTTACCAACTA 57.031 34.783 0.00 0.00 0.00 2.24
374 375 5.968528 AATCGCCATGTTTTACCAACTAA 57.031 34.783 0.00 0.00 0.00 2.24
375 376 5.968528 ATCGCCATGTTTTACCAACTAAA 57.031 34.783 0.00 0.00 0.00 1.85
376 377 5.110940 TCGCCATGTTTTACCAACTAAAC 57.889 39.130 0.00 0.00 35.38 2.01
377 378 4.822896 TCGCCATGTTTTACCAACTAAACT 59.177 37.500 0.00 0.00 35.73 2.66
378 379 5.299782 TCGCCATGTTTTACCAACTAAACTT 59.700 36.000 0.00 0.00 35.73 2.66
379 380 6.485984 TCGCCATGTTTTACCAACTAAACTTA 59.514 34.615 0.00 0.00 35.73 2.24
380 381 6.579666 CGCCATGTTTTACCAACTAAACTTAC 59.420 38.462 0.00 0.00 35.73 2.34
381 382 6.864685 GCCATGTTTTACCAACTAAACTTACC 59.135 38.462 0.00 0.00 35.73 2.85
382 383 7.470286 GCCATGTTTTACCAACTAAACTTACCA 60.470 37.037 0.00 0.00 35.73 3.25
383 384 7.863877 CCATGTTTTACCAACTAAACTTACCAC 59.136 37.037 0.00 0.00 35.73 4.16
384 385 7.332213 TGTTTTACCAACTAAACTTACCACC 57.668 36.000 0.00 0.00 35.73 4.61
385 386 7.118060 TGTTTTACCAACTAAACTTACCACCT 58.882 34.615 0.00 0.00 35.73 4.00
386 387 7.282901 TGTTTTACCAACTAAACTTACCACCTC 59.717 37.037 0.00 0.00 35.73 3.85
387 388 3.999046 ACCAACTAAACTTACCACCTCG 58.001 45.455 0.00 0.00 0.00 4.63
388 389 2.740447 CCAACTAAACTTACCACCTCGC 59.260 50.000 0.00 0.00 0.00 5.03
389 390 2.358939 ACTAAACTTACCACCTCGCG 57.641 50.000 0.00 0.00 0.00 5.87
390 391 0.997196 CTAAACTTACCACCTCGCGC 59.003 55.000 0.00 0.00 0.00 6.86
391 392 0.390209 TAAACTTACCACCTCGCGCC 60.390 55.000 0.00 0.00 0.00 6.53
392 393 2.386064 AAACTTACCACCTCGCGCCA 62.386 55.000 0.00 0.00 0.00 5.69
393 394 2.047655 CTTACCACCTCGCGCCAA 60.048 61.111 0.00 0.00 0.00 4.52
394 395 2.357760 TTACCACCTCGCGCCAAC 60.358 61.111 0.00 0.00 0.00 3.77
395 396 2.781595 CTTACCACCTCGCGCCAACT 62.782 60.000 0.00 0.00 0.00 3.16
396 397 1.534336 TTACCACCTCGCGCCAACTA 61.534 55.000 0.00 0.00 0.00 2.24
397 398 1.534336 TACCACCTCGCGCCAACTAA 61.534 55.000 0.00 0.00 0.00 2.24
398 399 1.669760 CCACCTCGCGCCAACTAAA 60.670 57.895 0.00 0.00 0.00 1.85
399 400 1.635663 CCACCTCGCGCCAACTAAAG 61.636 60.000 0.00 0.00 0.00 1.85
400 401 0.949105 CACCTCGCGCCAACTAAAGT 60.949 55.000 0.00 0.00 0.00 2.66
401 402 0.250166 ACCTCGCGCCAACTAAAGTT 60.250 50.000 0.00 0.00 39.12 2.66
418 419 9.498307 AACTAAAGTTGTTATGAAAACGTTCAG 57.502 29.630 0.00 0.00 40.86 3.02
419 420 8.126700 ACTAAAGTTGTTATGAAAACGTTCAGG 58.873 33.333 0.00 0.00 46.75 3.86
420 421 4.855531 AGTTGTTATGAAAACGTTCAGGC 58.144 39.130 0.00 0.00 46.75 4.85
421 422 4.578928 AGTTGTTATGAAAACGTTCAGGCT 59.421 37.500 0.00 0.00 46.75 4.58
422 423 4.481930 TGTTATGAAAACGTTCAGGCTG 57.518 40.909 8.58 8.58 46.75 4.85
423 424 3.880490 TGTTATGAAAACGTTCAGGCTGT 59.120 39.130 15.27 0.00 46.75 4.40
424 425 4.024387 TGTTATGAAAACGTTCAGGCTGTC 60.024 41.667 15.27 8.26 46.75 3.51
425 426 2.031258 TGAAAACGTTCAGGCTGTCA 57.969 45.000 15.27 6.00 38.88 3.58
426 427 2.571212 TGAAAACGTTCAGGCTGTCAT 58.429 42.857 15.27 0.00 38.88 3.06
427 428 2.290367 TGAAAACGTTCAGGCTGTCATG 59.710 45.455 15.27 10.37 38.88 3.07
428 429 0.593128 AAACGTTCAGGCTGTCATGC 59.407 50.000 15.27 0.91 0.00 4.06
429 430 0.250467 AACGTTCAGGCTGTCATGCT 60.250 50.000 15.27 0.00 0.00 3.79
430 431 0.250467 ACGTTCAGGCTGTCATGCTT 60.250 50.000 15.27 0.00 0.00 3.91
431 432 1.001974 ACGTTCAGGCTGTCATGCTTA 59.998 47.619 15.27 0.00 0.00 3.09
432 433 2.076100 CGTTCAGGCTGTCATGCTTAA 58.924 47.619 15.27 0.00 0.00 1.85
433 434 2.483877 CGTTCAGGCTGTCATGCTTAAA 59.516 45.455 15.27 0.00 0.00 1.52
434 435 3.425359 CGTTCAGGCTGTCATGCTTAAAG 60.425 47.826 15.27 0.00 0.00 1.85
435 436 3.423539 TCAGGCTGTCATGCTTAAAGT 57.576 42.857 15.27 0.00 0.00 2.66
436 437 3.338249 TCAGGCTGTCATGCTTAAAGTC 58.662 45.455 15.27 0.00 0.00 3.01
437 438 2.421424 CAGGCTGTCATGCTTAAAGTCC 59.579 50.000 6.28 0.00 0.00 3.85
438 439 1.398390 GGCTGTCATGCTTAAAGTCCG 59.602 52.381 0.00 0.00 0.00 4.79
439 440 2.346803 GCTGTCATGCTTAAAGTCCGA 58.653 47.619 0.00 0.00 0.00 4.55
440 441 2.742053 GCTGTCATGCTTAAAGTCCGAA 59.258 45.455 0.00 0.00 0.00 4.30
441 442 3.188460 GCTGTCATGCTTAAAGTCCGAAA 59.812 43.478 0.00 0.00 0.00 3.46
442 443 4.670221 GCTGTCATGCTTAAAGTCCGAAAG 60.670 45.833 0.00 0.00 0.00 2.62
443 444 4.385825 TGTCATGCTTAAAGTCCGAAAGT 58.614 39.130 0.00 0.00 0.00 2.66
444 445 4.819630 TGTCATGCTTAAAGTCCGAAAGTT 59.180 37.500 0.00 0.00 0.00 2.66
445 446 5.298276 TGTCATGCTTAAAGTCCGAAAGTTT 59.702 36.000 0.00 0.00 34.80 2.66
446 447 5.625311 GTCATGCTTAAAGTCCGAAAGTTTG 59.375 40.000 0.00 0.00 32.66 2.93
447 448 4.561735 TGCTTAAAGTCCGAAAGTTTGG 57.438 40.909 0.00 0.00 32.66 3.28
448 449 3.316868 TGCTTAAAGTCCGAAAGTTTGGG 59.683 43.478 10.25 10.25 32.66 4.12
449 450 3.566742 GCTTAAAGTCCGAAAGTTTGGGA 59.433 43.478 14.75 14.75 34.98 4.37
450 451 4.217767 GCTTAAAGTCCGAAAGTTTGGGAT 59.782 41.667 20.64 9.12 39.82 3.85
451 452 5.278808 GCTTAAAGTCCGAAAGTTTGGGATT 60.279 40.000 20.64 14.64 39.82 3.01
452 453 6.718522 TTAAAGTCCGAAAGTTTGGGATTT 57.281 33.333 20.64 19.17 39.82 2.17
453 454 7.522562 GCTTAAAGTCCGAAAGTTTGGGATTTA 60.523 37.037 22.01 20.18 39.82 1.40
454 455 5.700722 AAGTCCGAAAGTTTGGGATTTAC 57.299 39.130 20.89 10.69 39.82 2.01
455 456 4.981812 AGTCCGAAAGTTTGGGATTTACT 58.018 39.130 20.64 11.69 39.82 2.24
456 457 4.760204 AGTCCGAAAGTTTGGGATTTACTG 59.240 41.667 20.64 0.00 39.82 2.74
457 458 4.076394 TCCGAAAGTTTGGGATTTACTGG 58.924 43.478 14.75 0.00 32.17 4.00
458 459 3.192633 CCGAAAGTTTGGGATTTACTGGG 59.807 47.826 10.98 0.00 0.00 4.45
459 460 3.824443 CGAAAGTTTGGGATTTACTGGGT 59.176 43.478 0.00 0.00 0.00 4.51
460 461 4.082949 CGAAAGTTTGGGATTTACTGGGTC 60.083 45.833 0.00 0.00 0.00 4.46
461 462 4.463050 AAGTTTGGGATTTACTGGGTCA 57.537 40.909 0.00 0.00 0.00 4.02
462 463 4.034285 AGTTTGGGATTTACTGGGTCAG 57.966 45.455 0.00 0.00 37.52 3.51
463 464 3.655777 AGTTTGGGATTTACTGGGTCAGA 59.344 43.478 1.59 0.00 35.18 3.27
464 465 4.105697 AGTTTGGGATTTACTGGGTCAGAA 59.894 41.667 1.59 0.00 35.18 3.02
465 466 4.733077 TTGGGATTTACTGGGTCAGAAA 57.267 40.909 1.59 0.00 35.18 2.52
466 467 4.733077 TGGGATTTACTGGGTCAGAAAA 57.267 40.909 1.59 0.00 35.18 2.29
467 468 5.068215 TGGGATTTACTGGGTCAGAAAAA 57.932 39.130 1.59 3.05 35.18 1.94
468 469 5.650283 TGGGATTTACTGGGTCAGAAAAAT 58.350 37.500 1.59 7.16 35.30 1.82
469 470 5.480073 TGGGATTTACTGGGTCAGAAAAATG 59.520 40.000 13.33 0.00 34.01 2.32
470 471 5.480422 GGGATTTACTGGGTCAGAAAAATGT 59.520 40.000 13.33 0.00 34.01 2.71
471 472 6.389906 GGATTTACTGGGTCAGAAAAATGTG 58.610 40.000 13.33 0.00 34.01 3.21
472 473 4.846779 TTACTGGGTCAGAAAAATGTGC 57.153 40.909 1.59 0.00 35.18 4.57
473 474 2.665165 ACTGGGTCAGAAAAATGTGCA 58.335 42.857 1.59 0.00 35.18 4.57
474 475 3.233507 ACTGGGTCAGAAAAATGTGCAT 58.766 40.909 1.59 0.00 35.18 3.96
475 476 4.406456 ACTGGGTCAGAAAAATGTGCATA 58.594 39.130 1.59 0.00 35.18 3.14
495 496 7.545265 GTGCATACATTTTTAGCAATTCCTTGA 59.455 33.333 0.00 0.00 36.91 3.02
500 501 4.759516 TTTTAGCAATTCCTTGACGTCC 57.240 40.909 14.12 0.00 34.04 4.79
501 502 3.695830 TTAGCAATTCCTTGACGTCCT 57.304 42.857 14.12 1.66 34.04 3.85
502 503 1.813513 AGCAATTCCTTGACGTCCTG 58.186 50.000 14.12 5.49 34.04 3.86
506 507 2.738846 CAATTCCTTGACGTCCTGTGAG 59.261 50.000 14.12 3.30 34.04 3.51
508 509 1.699730 TCCTTGACGTCCTGTGAGAA 58.300 50.000 14.12 0.00 0.00 2.87
517 525 2.989840 CGTCCTGTGAGAAAGCTACTTG 59.010 50.000 0.00 0.00 0.00 3.16
610 619 0.824109 TCAGGATGGCAGGTTACTCG 59.176 55.000 0.00 0.00 36.16 4.18
660 669 4.950205 TTTGAACGGAGGAAGAGTAACT 57.050 40.909 0.00 0.00 0.00 2.24
780 789 9.860393 AGGGAATATCTAACTCCTAACCATATT 57.140 33.333 0.00 0.00 0.00 1.28
936 945 2.669133 CCCAGCTTCGATCACCCCA 61.669 63.158 0.00 0.00 0.00 4.96
1104 1143 2.039624 GCCACCCTCCTCCTCTCA 59.960 66.667 0.00 0.00 0.00 3.27
1105 1144 1.383803 GCCACCCTCCTCCTCTCAT 60.384 63.158 0.00 0.00 0.00 2.90
1106 1145 1.406860 GCCACCCTCCTCCTCTCATC 61.407 65.000 0.00 0.00 0.00 2.92
1110 1149 2.206536 CCTCCTCCTCTCATCCCGC 61.207 68.421 0.00 0.00 0.00 6.13
1111 1150 2.123251 TCCTCCTCTCATCCCGCC 60.123 66.667 0.00 0.00 0.00 6.13
1112 1151 3.610669 CCTCCTCTCATCCCGCCG 61.611 72.222 0.00 0.00 0.00 6.46
1113 1152 4.292178 CTCCTCTCATCCCGCCGC 62.292 72.222 0.00 0.00 0.00 6.53
1157 1196 6.373774 GGTCCAATCTAATCTATGCATGGAAG 59.626 42.308 17.30 10.83 37.45 3.46
1160 1199 6.150641 CCAATCTAATCTATGCATGGAAGGTG 59.849 42.308 17.30 11.56 0.00 4.00
1170 1209 2.983592 GGAAGGTGGTTGCCGGTG 60.984 66.667 1.90 0.00 0.00 4.94
1393 1432 2.163509 GAGAGCGCCTACCTCATCATA 58.836 52.381 2.29 0.00 0.00 2.15
1462 1516 3.432252 TCTCTTTTCGGCGTTCATTTCTC 59.568 43.478 6.85 0.00 0.00 2.87
1503 1560 0.550432 TAGCTAACCCATGCATGCCA 59.450 50.000 21.69 3.52 0.00 4.92
1504 1561 0.324552 AGCTAACCCATGCATGCCAA 60.325 50.000 21.69 5.23 0.00 4.52
1777 1846 7.358848 GGCGTTGTTTACTTTGGAATACAATTG 60.359 37.037 3.24 3.24 39.21 2.32
1799 1868 6.320434 TGATGGGAAAGGATAATGTACACA 57.680 37.500 0.00 0.00 0.00 3.72
1894 1964 4.963276 TCTTCACACACCAAGTTCTTTG 57.037 40.909 0.00 0.00 36.50 2.77
1898 1968 4.075682 TCACACACCAAGTTCTTTGACAA 58.924 39.130 0.00 0.00 39.21 3.18
1916 1986 1.067142 CAAGATGTTGCCTTGCATGCT 60.067 47.619 20.33 0.00 38.76 3.79
1919 1989 2.827322 AGATGTTGCCTTGCATGCTTAA 59.173 40.909 20.33 4.64 38.76 1.85
2059 2373 1.221466 TGTTGCTCTCGCCAAACTCG 61.221 55.000 0.00 0.00 34.43 4.18
2124 2442 6.128634 GGTTCACGATCTAACTAAAACCTGTG 60.129 42.308 0.00 0.00 33.70 3.66
2125 2443 6.335471 TCACGATCTAACTAAAACCTGTGA 57.665 37.500 0.00 0.00 0.00 3.58
2126 2444 6.154445 TCACGATCTAACTAAAACCTGTGAC 58.846 40.000 0.00 0.00 0.00 3.67
2184 2534 4.320714 GGGATGCATGCATATAGTGTTGTG 60.321 45.833 32.27 0.00 36.70 3.33
2202 2553 4.754372 TGTGATCTTTGCATCTTGTGAC 57.246 40.909 0.00 0.00 0.00 3.67
2223 2574 2.319844 CCTTCCCTTTTGCCAACTCTT 58.680 47.619 0.00 0.00 0.00 2.85
2271 2631 1.802553 AAGGATACGGTACCAGCCAT 58.197 50.000 13.54 0.00 46.39 4.40
2300 2666 2.998097 CCATCCCGTGGGTCATGT 59.002 61.111 4.53 0.00 44.79 3.21
2329 2697 9.429109 TCCAGGTGTAGAGTTCAACAATATATA 57.571 33.333 0.00 0.00 0.00 0.86
2364 2732 7.969536 ATTATCCAGTGAATATGTTTCCTCG 57.030 36.000 0.00 0.00 0.00 4.63
2373 2741 9.530633 AGTGAATATGTTTCCTCGTTAATCTAC 57.469 33.333 0.00 0.00 0.00 2.59
2376 2744 7.925703 ATATGTTTCCTCGTTAATCTACACG 57.074 36.000 0.00 0.00 37.77 4.49
2377 2745 4.487948 TGTTTCCTCGTTAATCTACACGG 58.512 43.478 0.00 0.00 37.02 4.94
2408 2782 6.854496 TTAATGAGACGTGTGCTTTTACTT 57.146 33.333 0.00 0.00 0.00 2.24
2409 2783 4.732285 ATGAGACGTGTGCTTTTACTTG 57.268 40.909 0.00 0.00 0.00 3.16
2601 2991 0.435008 CGAAACGCCAGAGAAACGAG 59.565 55.000 0.00 0.00 0.00 4.18
2824 3237 2.203451 AGCTTGGCTTGCAGCAGT 60.203 55.556 9.78 0.00 44.75 4.40
2857 3270 2.097825 GCCAAGTGATCCAATCAAGCT 58.902 47.619 0.00 0.00 41.69 3.74
2887 3300 6.566753 GCAGAGATTTTTAGCCCGTGATATTC 60.567 42.308 0.00 0.00 0.00 1.75
3104 3558 7.433131 GCATGATATGGATTGTTAATTATGGCG 59.567 37.037 0.00 0.00 0.00 5.69
3110 3564 7.575414 TGGATTGTTAATTATGGCGTGTTAT 57.425 32.000 0.00 0.00 0.00 1.89
3215 3715 3.582208 ACATCTGCTATCTTCCATCCCTC 59.418 47.826 0.00 0.00 0.00 4.30
3613 4131 7.962964 TCGAACAGGGATAATATGCTTAAAG 57.037 36.000 0.00 0.00 0.00 1.85
3666 4184 6.708285 TCTTGGATGGTTCCTTCTTTAGTAC 58.292 40.000 5.05 0.00 43.07 2.73
3737 4263 6.428083 TGGAGTAGAAAGGTTTGATGTGTA 57.572 37.500 0.00 0.00 0.00 2.90
3742 4268 1.165270 AAGGTTTGATGTGTAGCGGC 58.835 50.000 0.00 0.00 0.00 6.53
3801 4327 3.110447 CCACATTTGGGGTTTCACTTG 57.890 47.619 0.00 0.00 39.57 3.16
3802 4328 2.482864 CACATTTGGGGTTTCACTTGC 58.517 47.619 0.00 0.00 0.00 4.01
3803 4329 1.068434 ACATTTGGGGTTTCACTTGCG 59.932 47.619 0.00 0.00 0.00 4.85
3804 4330 1.339610 CATTTGGGGTTTCACTTGCGA 59.660 47.619 0.00 0.00 0.00 5.10
3805 4331 1.475403 TTTGGGGTTTCACTTGCGAA 58.525 45.000 0.00 0.00 0.00 4.70
3806 4332 1.475403 TTGGGGTTTCACTTGCGAAA 58.525 45.000 0.00 0.00 32.53 3.46
3807 4333 1.475403 TGGGGTTTCACTTGCGAAAA 58.525 45.000 0.00 0.00 36.67 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.098044 CGGTCTTGAGTATGTATGAGGTGT 59.902 45.833 0.00 0.00 0.00 4.16
3 4 4.611943 CGGTCTTGAGTATGTATGAGGTG 58.388 47.826 0.00 0.00 0.00 4.00
4 5 3.068307 GCGGTCTTGAGTATGTATGAGGT 59.932 47.826 0.00 0.00 0.00 3.85
6 7 4.036852 TGAGCGGTCTTGAGTATGTATGAG 59.963 45.833 16.64 0.00 0.00 2.90
7 8 3.951680 TGAGCGGTCTTGAGTATGTATGA 59.048 43.478 16.64 0.00 0.00 2.15
8 9 4.307443 TGAGCGGTCTTGAGTATGTATG 57.693 45.455 16.64 0.00 0.00 2.39
9 10 4.830046 AGATGAGCGGTCTTGAGTATGTAT 59.170 41.667 16.64 0.00 0.00 2.29
10 11 4.036852 CAGATGAGCGGTCTTGAGTATGTA 59.963 45.833 16.64 0.00 0.00 2.29
11 12 3.027412 AGATGAGCGGTCTTGAGTATGT 58.973 45.455 16.64 0.00 0.00 2.29
12 13 3.181482 ACAGATGAGCGGTCTTGAGTATG 60.181 47.826 16.64 7.43 0.00 2.39
13 14 3.027412 ACAGATGAGCGGTCTTGAGTAT 58.973 45.455 16.64 0.00 0.00 2.12
14 15 2.447443 ACAGATGAGCGGTCTTGAGTA 58.553 47.619 16.64 0.00 0.00 2.59
15 16 1.261480 ACAGATGAGCGGTCTTGAGT 58.739 50.000 16.64 7.30 0.00 3.41
16 17 1.998315 CAACAGATGAGCGGTCTTGAG 59.002 52.381 16.64 6.69 0.00 3.02
17 18 1.338105 CCAACAGATGAGCGGTCTTGA 60.338 52.381 16.64 0.00 0.00 3.02
18 19 1.081892 CCAACAGATGAGCGGTCTTG 58.918 55.000 16.64 13.33 0.00 3.02
19 20 0.687354 ACCAACAGATGAGCGGTCTT 59.313 50.000 16.64 9.68 0.00 3.01
20 21 0.036952 CACCAACAGATGAGCGGTCT 60.037 55.000 16.64 0.97 0.00 3.85
21 22 1.639298 GCACCAACAGATGAGCGGTC 61.639 60.000 7.89 7.89 0.00 4.79
22 23 1.672356 GCACCAACAGATGAGCGGT 60.672 57.895 0.00 0.00 0.00 5.68
23 24 1.642037 CTGCACCAACAGATGAGCGG 61.642 60.000 0.00 0.00 40.25 5.52
24 25 0.952497 ACTGCACCAACAGATGAGCG 60.952 55.000 0.00 0.00 40.25 5.03
25 26 0.520404 CACTGCACCAACAGATGAGC 59.480 55.000 0.00 0.00 40.25 4.26
26 27 1.162698 CCACTGCACCAACAGATGAG 58.837 55.000 0.00 0.00 40.25 2.90
27 28 0.473755 ACCACTGCACCAACAGATGA 59.526 50.000 0.00 0.00 40.25 2.92
28 29 0.594602 CACCACTGCACCAACAGATG 59.405 55.000 0.00 0.00 40.25 2.90
29 30 0.538057 CCACCACTGCACCAACAGAT 60.538 55.000 0.00 0.00 40.25 2.90
30 31 1.152984 CCACCACTGCACCAACAGA 60.153 57.895 0.00 0.00 40.25 3.41
31 32 1.453745 ACCACCACTGCACCAACAG 60.454 57.895 0.00 0.00 43.59 3.16
32 33 1.752310 CACCACCACTGCACCAACA 60.752 57.895 0.00 0.00 0.00 3.33
33 34 2.489275 CCACCACCACTGCACCAAC 61.489 63.158 0.00 0.00 0.00 3.77
34 35 2.123939 CCACCACCACTGCACCAA 60.124 61.111 0.00 0.00 0.00 3.67
35 36 3.093172 TCCACCACCACTGCACCA 61.093 61.111 0.00 0.00 0.00 4.17
36 37 2.594592 GTCCACCACCACTGCACC 60.595 66.667 0.00 0.00 0.00 5.01
37 38 0.823356 AATGTCCACCACCACTGCAC 60.823 55.000 0.00 0.00 0.00 4.57
38 39 0.767998 TAATGTCCACCACCACTGCA 59.232 50.000 0.00 0.00 0.00 4.41
39 40 1.453155 CTAATGTCCACCACCACTGC 58.547 55.000 0.00 0.00 0.00 4.40
40 41 1.950484 GCCTAATGTCCACCACCACTG 60.950 57.143 0.00 0.00 0.00 3.66
41 42 0.328258 GCCTAATGTCCACCACCACT 59.672 55.000 0.00 0.00 0.00 4.00
42 43 0.037590 TGCCTAATGTCCACCACCAC 59.962 55.000 0.00 0.00 0.00 4.16
43 44 0.998928 ATGCCTAATGTCCACCACCA 59.001 50.000 0.00 0.00 0.00 4.17
44 45 1.392589 CATGCCTAATGTCCACCACC 58.607 55.000 0.00 0.00 0.00 4.61
53 54 4.060900 AGTCGAATGCTACATGCCTAATG 58.939 43.478 0.00 0.00 42.00 1.90
54 55 4.342862 AGTCGAATGCTACATGCCTAAT 57.657 40.909 0.00 0.00 42.00 1.73
55 56 3.819564 AGTCGAATGCTACATGCCTAA 57.180 42.857 0.00 0.00 42.00 2.69
56 57 3.717707 GAAGTCGAATGCTACATGCCTA 58.282 45.455 0.00 0.00 42.00 3.93
57 58 2.555199 GAAGTCGAATGCTACATGCCT 58.445 47.619 0.00 0.00 42.00 4.75
58 59 1.258982 CGAAGTCGAATGCTACATGCC 59.741 52.381 0.00 0.00 43.02 4.40
59 60 2.193447 TCGAAGTCGAATGCTACATGC 58.807 47.619 0.00 0.00 46.30 4.06
82 83 4.929211 CGACAATTGTGATTCTAGACCACA 59.071 41.667 17.58 18.24 38.83 4.17
83 84 4.330074 CCGACAATTGTGATTCTAGACCAC 59.670 45.833 17.58 14.45 0.00 4.16
84 85 4.503910 CCGACAATTGTGATTCTAGACCA 58.496 43.478 17.58 0.00 0.00 4.02
85 86 3.309954 GCCGACAATTGTGATTCTAGACC 59.690 47.826 17.58 0.00 0.00 3.85
86 87 3.932710 TGCCGACAATTGTGATTCTAGAC 59.067 43.478 17.58 0.00 0.00 2.59
87 88 4.200838 TGCCGACAATTGTGATTCTAGA 57.799 40.909 17.58 0.00 0.00 2.43
88 89 6.791887 ATATGCCGACAATTGTGATTCTAG 57.208 37.500 17.58 0.00 0.00 2.43
89 90 8.669946 TTAATATGCCGACAATTGTGATTCTA 57.330 30.769 17.58 2.72 0.00 2.10
90 91 7.566760 TTAATATGCCGACAATTGTGATTCT 57.433 32.000 17.58 0.37 0.00 2.40
91 92 7.862372 ACATTAATATGCCGACAATTGTGATTC 59.138 33.333 17.58 0.00 35.03 2.52
92 93 7.715657 ACATTAATATGCCGACAATTGTGATT 58.284 30.769 17.58 7.96 35.03 2.57
93 94 7.275888 ACATTAATATGCCGACAATTGTGAT 57.724 32.000 17.58 5.14 35.03 3.06
94 95 6.691754 ACATTAATATGCCGACAATTGTGA 57.308 33.333 17.58 0.00 35.03 3.58
95 96 6.417635 GGAACATTAATATGCCGACAATTGTG 59.582 38.462 17.58 8.34 35.03 3.33
96 97 6.321181 AGGAACATTAATATGCCGACAATTGT 59.679 34.615 11.78 11.78 35.03 2.71
97 98 6.638063 CAGGAACATTAATATGCCGACAATTG 59.362 38.462 3.24 3.24 35.03 2.32
98 99 6.735694 GCAGGAACATTAATATGCCGACAATT 60.736 38.462 0.00 0.00 35.03 2.32
99 100 5.278463 GCAGGAACATTAATATGCCGACAAT 60.278 40.000 0.00 0.00 35.03 2.71
100 101 4.036262 GCAGGAACATTAATATGCCGACAA 59.964 41.667 0.00 0.00 35.03 3.18
101 102 3.563808 GCAGGAACATTAATATGCCGACA 59.436 43.478 0.00 0.00 35.03 4.35
102 103 3.815401 AGCAGGAACATTAATATGCCGAC 59.185 43.478 0.00 0.00 35.03 4.79
103 104 4.085357 AGCAGGAACATTAATATGCCGA 57.915 40.909 0.00 0.00 35.03 5.54
104 105 4.836125 AAGCAGGAACATTAATATGCCG 57.164 40.909 0.00 0.00 35.03 5.69
105 106 8.143835 ACAAATAAGCAGGAACATTAATATGCC 58.856 33.333 0.00 0.00 35.03 4.40
106 107 9.533253 AACAAATAAGCAGGAACATTAATATGC 57.467 29.630 0.00 0.00 35.03 3.14
110 111 8.971073 AGCTAACAAATAAGCAGGAACATTAAT 58.029 29.630 0.00 0.00 41.32 1.40
111 112 8.348285 AGCTAACAAATAAGCAGGAACATTAA 57.652 30.769 0.00 0.00 41.32 1.40
112 113 7.938140 AGCTAACAAATAAGCAGGAACATTA 57.062 32.000 0.00 0.00 41.32 1.90
113 114 6.840780 AGCTAACAAATAAGCAGGAACATT 57.159 33.333 0.00 0.00 41.32 2.71
114 115 7.938140 TTAGCTAACAAATAAGCAGGAACAT 57.062 32.000 0.86 0.00 41.32 2.71
115 116 7.753309 TTTAGCTAACAAATAAGCAGGAACA 57.247 32.000 5.45 0.00 41.32 3.18
116 117 8.678199 AGATTTAGCTAACAAATAAGCAGGAAC 58.322 33.333 5.45 0.00 41.32 3.62
117 118 8.807948 AGATTTAGCTAACAAATAAGCAGGAA 57.192 30.769 5.45 0.00 41.32 3.36
118 119 8.807948 AAGATTTAGCTAACAAATAAGCAGGA 57.192 30.769 5.45 0.00 41.32 3.86
128 129 9.672673 AGAGCTCAAATAAGATTTAGCTAACAA 57.327 29.630 17.77 0.00 40.24 2.83
144 145 8.754080 ACACAAAGACTACTATAGAGCTCAAAT 58.246 33.333 17.77 11.46 0.00 2.32
145 146 8.123639 ACACAAAGACTACTATAGAGCTCAAA 57.876 34.615 17.77 3.56 0.00 2.69
146 147 7.704578 ACACAAAGACTACTATAGAGCTCAA 57.295 36.000 17.77 0.00 0.00 3.02
147 148 7.704578 AACACAAAGACTACTATAGAGCTCA 57.295 36.000 17.77 2.09 0.00 4.26
156 157 9.204570 GCAGAAAGAATAACACAAAGACTACTA 57.795 33.333 0.00 0.00 0.00 1.82
157 158 7.934120 AGCAGAAAGAATAACACAAAGACTACT 59.066 33.333 0.00 0.00 0.00 2.57
158 159 8.089115 AGCAGAAAGAATAACACAAAGACTAC 57.911 34.615 0.00 0.00 0.00 2.73
159 160 7.387948 GGAGCAGAAAGAATAACACAAAGACTA 59.612 37.037 0.00 0.00 0.00 2.59
160 161 6.205658 GGAGCAGAAAGAATAACACAAAGACT 59.794 38.462 0.00 0.00 0.00 3.24
161 162 6.374578 GGAGCAGAAAGAATAACACAAAGAC 58.625 40.000 0.00 0.00 0.00 3.01
162 163 5.179368 CGGAGCAGAAAGAATAACACAAAGA 59.821 40.000 0.00 0.00 0.00 2.52
163 164 5.385617 CGGAGCAGAAAGAATAACACAAAG 58.614 41.667 0.00 0.00 0.00 2.77
164 165 4.215399 CCGGAGCAGAAAGAATAACACAAA 59.785 41.667 0.00 0.00 0.00 2.83
165 166 3.751175 CCGGAGCAGAAAGAATAACACAA 59.249 43.478 0.00 0.00 0.00 3.33
166 167 3.334691 CCGGAGCAGAAAGAATAACACA 58.665 45.455 0.00 0.00 0.00 3.72
167 168 2.678336 CCCGGAGCAGAAAGAATAACAC 59.322 50.000 0.73 0.00 0.00 3.32
168 169 2.355716 CCCCGGAGCAGAAAGAATAACA 60.356 50.000 0.73 0.00 0.00 2.41
169 170 2.289565 CCCCGGAGCAGAAAGAATAAC 58.710 52.381 0.73 0.00 0.00 1.89
170 171 1.913419 ACCCCGGAGCAGAAAGAATAA 59.087 47.619 0.73 0.00 0.00 1.40
171 172 1.209504 CACCCCGGAGCAGAAAGAATA 59.790 52.381 0.73 0.00 0.00 1.75
172 173 0.035056 CACCCCGGAGCAGAAAGAAT 60.035 55.000 0.73 0.00 0.00 2.40
173 174 1.374947 CACCCCGGAGCAGAAAGAA 59.625 57.895 0.73 0.00 0.00 2.52
174 175 0.543410 TACACCCCGGAGCAGAAAGA 60.543 55.000 0.73 0.00 0.00 2.52
175 176 0.541863 ATACACCCCGGAGCAGAAAG 59.458 55.000 0.73 0.00 0.00 2.62
176 177 0.539986 GATACACCCCGGAGCAGAAA 59.460 55.000 0.73 0.00 0.00 2.52
177 178 0.325296 AGATACACCCCGGAGCAGAA 60.325 55.000 0.73 0.00 0.00 3.02
178 179 0.554305 TAGATACACCCCGGAGCAGA 59.446 55.000 0.73 0.00 0.00 4.26
179 180 1.410004 TTAGATACACCCCGGAGCAG 58.590 55.000 0.73 0.00 0.00 4.24
180 181 1.868713 TTTAGATACACCCCGGAGCA 58.131 50.000 0.73 0.00 0.00 4.26
181 182 2.433239 TCTTTTAGATACACCCCGGAGC 59.567 50.000 0.73 0.00 0.00 4.70
182 183 3.705072 AGTCTTTTAGATACACCCCGGAG 59.295 47.826 0.73 0.00 0.00 4.63
183 184 3.716431 AGTCTTTTAGATACACCCCGGA 58.284 45.455 0.73 0.00 0.00 5.14
184 185 5.070047 ACATAGTCTTTTAGATACACCCCGG 59.930 44.000 0.00 0.00 0.00 5.73
185 186 6.158023 ACATAGTCTTTTAGATACACCCCG 57.842 41.667 0.00 0.00 0.00 5.73
261 262 9.214957 TGCTTAAAATCCGAACATATTATCGAT 57.785 29.630 2.16 2.16 41.43 3.59
262 263 8.596271 TGCTTAAAATCCGAACATATTATCGA 57.404 30.769 8.17 0.00 41.43 3.59
263 264 9.265938 CATGCTTAAAATCCGAACATATTATCG 57.734 33.333 0.88 0.88 38.74 2.92
264 265 9.559958 CCATGCTTAAAATCCGAACATATTATC 57.440 33.333 0.00 0.00 0.00 1.75
265 266 8.028938 GCCATGCTTAAAATCCGAACATATTAT 58.971 33.333 0.00 0.00 0.00 1.28
266 267 7.013750 TGCCATGCTTAAAATCCGAACATATTA 59.986 33.333 0.00 0.00 0.00 0.98
267 268 6.183360 TGCCATGCTTAAAATCCGAACATATT 60.183 34.615 0.00 0.00 0.00 1.28
268 269 5.301551 TGCCATGCTTAAAATCCGAACATAT 59.698 36.000 0.00 0.00 0.00 1.78
269 270 4.642437 TGCCATGCTTAAAATCCGAACATA 59.358 37.500 0.00 0.00 0.00 2.29
270 271 3.446873 TGCCATGCTTAAAATCCGAACAT 59.553 39.130 0.00 0.00 0.00 2.71
271 272 2.822561 TGCCATGCTTAAAATCCGAACA 59.177 40.909 0.00 0.00 0.00 3.18
272 273 3.502191 TGCCATGCTTAAAATCCGAAC 57.498 42.857 0.00 0.00 0.00 3.95
273 274 3.367910 GGTTGCCATGCTTAAAATCCGAA 60.368 43.478 0.00 0.00 0.00 4.30
274 275 2.165437 GGTTGCCATGCTTAAAATCCGA 59.835 45.455 0.00 0.00 0.00 4.55
275 276 2.539476 GGTTGCCATGCTTAAAATCCG 58.461 47.619 0.00 0.00 0.00 4.18
276 277 2.235898 TGGGTTGCCATGCTTAAAATCC 59.764 45.455 0.00 0.00 0.00 3.01
277 278 3.195396 TCTGGGTTGCCATGCTTAAAATC 59.805 43.478 0.00 0.00 0.00 2.17
278 279 3.055891 GTCTGGGTTGCCATGCTTAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
279 280 2.298729 GTCTGGGTTGCCATGCTTAAAA 59.701 45.455 0.00 0.00 0.00 1.52
280 281 1.892474 GTCTGGGTTGCCATGCTTAAA 59.108 47.619 0.00 0.00 0.00 1.52
281 282 1.544724 GTCTGGGTTGCCATGCTTAA 58.455 50.000 0.00 0.00 0.00 1.85
282 283 0.676466 CGTCTGGGTTGCCATGCTTA 60.676 55.000 0.00 0.00 0.00 3.09
283 284 1.973281 CGTCTGGGTTGCCATGCTT 60.973 57.895 0.00 0.00 0.00 3.91
284 285 2.360350 CGTCTGGGTTGCCATGCT 60.360 61.111 0.00 0.00 0.00 3.79
285 286 1.805428 AAACGTCTGGGTTGCCATGC 61.805 55.000 0.00 0.00 0.00 4.06
286 287 0.673437 AAAACGTCTGGGTTGCCATG 59.327 50.000 0.00 0.00 0.00 3.66
287 288 0.673437 CAAAACGTCTGGGTTGCCAT 59.327 50.000 0.00 0.00 0.00 4.40
288 289 0.394488 TCAAAACGTCTGGGTTGCCA 60.394 50.000 0.00 0.00 0.00 4.92
289 290 0.958822 ATCAAAACGTCTGGGTTGCC 59.041 50.000 0.00 0.00 0.00 4.52
290 291 2.793278 AATCAAAACGTCTGGGTTGC 57.207 45.000 0.00 0.00 0.00 4.17
291 292 5.174943 GCTTAAAATCAAAACGTCTGGGTTG 59.825 40.000 0.00 0.00 0.00 3.77
292 293 5.163499 TGCTTAAAATCAAAACGTCTGGGTT 60.163 36.000 0.00 0.00 0.00 4.11
293 294 4.339814 TGCTTAAAATCAAAACGTCTGGGT 59.660 37.500 0.00 0.00 0.00 4.51
294 295 4.865776 TGCTTAAAATCAAAACGTCTGGG 58.134 39.130 0.00 0.00 0.00 4.45
295 296 5.345741 CCATGCTTAAAATCAAAACGTCTGG 59.654 40.000 0.00 0.00 0.00 3.86
296 297 5.164061 GCCATGCTTAAAATCAAAACGTCTG 60.164 40.000 0.00 0.00 0.00 3.51
297 298 4.923281 GCCATGCTTAAAATCAAAACGTCT 59.077 37.500 0.00 0.00 0.00 4.18
298 299 4.683781 TGCCATGCTTAAAATCAAAACGTC 59.316 37.500 0.00 0.00 0.00 4.34
299 300 4.626042 TGCCATGCTTAAAATCAAAACGT 58.374 34.783 0.00 0.00 0.00 3.99
300 301 5.373262 GTTGCCATGCTTAAAATCAAAACG 58.627 37.500 0.00 0.00 0.00 3.60
301 302 5.334802 GGGTTGCCATGCTTAAAATCAAAAC 60.335 40.000 0.00 0.00 0.00 2.43
302 303 4.759183 GGGTTGCCATGCTTAAAATCAAAA 59.241 37.500 0.00 0.00 0.00 2.44
303 304 4.322567 GGGTTGCCATGCTTAAAATCAAA 58.677 39.130 0.00 0.00 0.00 2.69
304 305 3.616076 CGGGTTGCCATGCTTAAAATCAA 60.616 43.478 0.00 0.00 0.00 2.57
305 306 2.094286 CGGGTTGCCATGCTTAAAATCA 60.094 45.455 0.00 0.00 0.00 2.57
306 307 2.165437 TCGGGTTGCCATGCTTAAAATC 59.835 45.455 0.00 0.00 0.00 2.17
307 308 2.094234 GTCGGGTTGCCATGCTTAAAAT 60.094 45.455 0.00 0.00 0.00 1.82
308 309 1.271102 GTCGGGTTGCCATGCTTAAAA 59.729 47.619 0.00 0.00 0.00 1.52
309 310 0.885196 GTCGGGTTGCCATGCTTAAA 59.115 50.000 0.00 0.00 0.00 1.52
310 311 0.250945 TGTCGGGTTGCCATGCTTAA 60.251 50.000 0.00 0.00 0.00 1.85
311 312 0.250945 TTGTCGGGTTGCCATGCTTA 60.251 50.000 0.00 0.00 0.00 3.09
312 313 0.899717 ATTGTCGGGTTGCCATGCTT 60.900 50.000 0.00 0.00 0.00 3.91
313 314 0.899717 AATTGTCGGGTTGCCATGCT 60.900 50.000 0.00 0.00 0.00 3.79
314 315 0.037419 AAATTGTCGGGTTGCCATGC 60.037 50.000 0.00 0.00 0.00 4.06
315 316 2.453983 AAAATTGTCGGGTTGCCATG 57.546 45.000 0.00 0.00 0.00 3.66
316 317 2.366916 TGAAAAATTGTCGGGTTGCCAT 59.633 40.909 0.00 0.00 0.00 4.40
317 318 1.757118 TGAAAAATTGTCGGGTTGCCA 59.243 42.857 0.00 0.00 0.00 4.92
318 319 2.517650 TGAAAAATTGTCGGGTTGCC 57.482 45.000 0.00 0.00 0.00 4.52
319 320 3.428534 GTCATGAAAAATTGTCGGGTTGC 59.571 43.478 0.00 0.00 0.00 4.17
320 321 4.615949 TGTCATGAAAAATTGTCGGGTTG 58.384 39.130 0.00 0.00 0.00 3.77
321 322 4.927978 TGTCATGAAAAATTGTCGGGTT 57.072 36.364 0.00 0.00 0.00 4.11
322 323 4.340950 AGTTGTCATGAAAAATTGTCGGGT 59.659 37.500 0.00 0.00 0.00 5.28
323 324 4.870363 AGTTGTCATGAAAAATTGTCGGG 58.130 39.130 0.00 0.00 0.00 5.14
324 325 6.826893 AAAGTTGTCATGAAAAATTGTCGG 57.173 33.333 11.85 0.00 0.00 4.79
325 326 8.781067 TCTAAAGTTGTCATGAAAAATTGTCG 57.219 30.769 11.85 4.48 0.00 4.35
331 332 8.751335 GCGATTTTCTAAAGTTGTCATGAAAAA 58.249 29.630 0.00 0.00 37.10 1.94
332 333 7.381139 GGCGATTTTCTAAAGTTGTCATGAAAA 59.619 33.333 0.00 0.00 37.65 2.29
333 334 6.861055 GGCGATTTTCTAAAGTTGTCATGAAA 59.139 34.615 0.00 0.00 0.00 2.69
334 335 6.016693 TGGCGATTTTCTAAAGTTGTCATGAA 60.017 34.615 0.00 0.00 0.00 2.57
335 336 5.471797 TGGCGATTTTCTAAAGTTGTCATGA 59.528 36.000 0.00 0.00 0.00 3.07
336 337 5.698832 TGGCGATTTTCTAAAGTTGTCATG 58.301 37.500 0.00 0.00 0.00 3.07
337 338 5.957842 TGGCGATTTTCTAAAGTTGTCAT 57.042 34.783 0.00 0.00 0.00 3.06
338 339 5.240623 ACATGGCGATTTTCTAAAGTTGTCA 59.759 36.000 0.00 0.00 29.84 3.58
339 340 5.699839 ACATGGCGATTTTCTAAAGTTGTC 58.300 37.500 0.00 0.00 0.00 3.18
340 341 5.705609 ACATGGCGATTTTCTAAAGTTGT 57.294 34.783 0.00 0.00 0.00 3.32
341 342 7.406799 AAAACATGGCGATTTTCTAAAGTTG 57.593 32.000 0.00 0.00 0.00 3.16
342 343 7.597369 GGTAAAACATGGCGATTTTCTAAAGTT 59.403 33.333 0.00 0.00 30.80 2.66
343 344 7.088272 GGTAAAACATGGCGATTTTCTAAAGT 58.912 34.615 0.00 0.00 30.80 2.66
344 345 7.087639 TGGTAAAACATGGCGATTTTCTAAAG 58.912 34.615 0.00 0.00 30.80 1.85
345 346 6.982852 TGGTAAAACATGGCGATTTTCTAAA 58.017 32.000 0.00 0.00 30.80 1.85
346 347 6.576662 TGGTAAAACATGGCGATTTTCTAA 57.423 33.333 0.00 0.00 30.80 2.10
347 348 6.207810 AGTTGGTAAAACATGGCGATTTTCTA 59.792 34.615 0.00 0.00 30.80 2.10
348 349 5.010617 AGTTGGTAAAACATGGCGATTTTCT 59.989 36.000 0.00 0.00 30.80 2.52
349 350 5.227152 AGTTGGTAAAACATGGCGATTTTC 58.773 37.500 0.00 0.00 30.80 2.29
350 351 5.208463 AGTTGGTAAAACATGGCGATTTT 57.792 34.783 0.00 0.00 32.85 1.82
351 352 4.864704 AGTTGGTAAAACATGGCGATTT 57.135 36.364 0.00 0.00 0.00 2.17
352 353 5.968528 TTAGTTGGTAAAACATGGCGATT 57.031 34.783 0.00 0.00 0.00 3.34
353 354 5.475564 AGTTTAGTTGGTAAAACATGGCGAT 59.524 36.000 0.00 0.00 37.92 4.58
354 355 4.822896 AGTTTAGTTGGTAAAACATGGCGA 59.177 37.500 0.00 0.00 37.92 5.54
355 356 5.116069 AGTTTAGTTGGTAAAACATGGCG 57.884 39.130 0.00 0.00 37.92 5.69
356 357 6.864685 GGTAAGTTTAGTTGGTAAAACATGGC 59.135 38.462 0.00 0.00 37.92 4.40
357 358 7.863877 GTGGTAAGTTTAGTTGGTAAAACATGG 59.136 37.037 0.00 0.00 37.92 3.66
358 359 7.863877 GGTGGTAAGTTTAGTTGGTAAAACATG 59.136 37.037 0.00 0.00 37.92 3.21
359 360 7.781219 AGGTGGTAAGTTTAGTTGGTAAAACAT 59.219 33.333 0.00 0.00 37.92 2.71
360 361 7.118060 AGGTGGTAAGTTTAGTTGGTAAAACA 58.882 34.615 0.00 0.00 37.92 2.83
361 362 7.518848 CGAGGTGGTAAGTTTAGTTGGTAAAAC 60.519 40.741 0.00 0.00 36.13 2.43
362 363 6.482973 CGAGGTGGTAAGTTTAGTTGGTAAAA 59.517 38.462 0.00 0.00 32.22 1.52
363 364 5.990996 CGAGGTGGTAAGTTTAGTTGGTAAA 59.009 40.000 0.00 0.00 0.00 2.01
364 365 5.540911 CGAGGTGGTAAGTTTAGTTGGTAA 58.459 41.667 0.00 0.00 0.00 2.85
365 366 4.561326 GCGAGGTGGTAAGTTTAGTTGGTA 60.561 45.833 0.00 0.00 0.00 3.25
366 367 3.804759 GCGAGGTGGTAAGTTTAGTTGGT 60.805 47.826 0.00 0.00 0.00 3.67
367 368 2.740447 GCGAGGTGGTAAGTTTAGTTGG 59.260 50.000 0.00 0.00 0.00 3.77
368 369 2.410730 CGCGAGGTGGTAAGTTTAGTTG 59.589 50.000 0.00 0.00 0.00 3.16
369 370 2.680577 CGCGAGGTGGTAAGTTTAGTT 58.319 47.619 0.00 0.00 0.00 2.24
370 371 1.670967 GCGCGAGGTGGTAAGTTTAGT 60.671 52.381 12.10 0.00 0.00 2.24
371 372 0.997196 GCGCGAGGTGGTAAGTTTAG 59.003 55.000 12.10 0.00 0.00 1.85
372 373 0.390209 GGCGCGAGGTGGTAAGTTTA 60.390 55.000 12.10 0.00 0.00 2.01
373 374 1.670083 GGCGCGAGGTGGTAAGTTT 60.670 57.895 12.10 0.00 0.00 2.66
374 375 2.047560 GGCGCGAGGTGGTAAGTT 60.048 61.111 12.10 0.00 0.00 2.66
375 376 2.874664 TTGGCGCGAGGTGGTAAGT 61.875 57.895 12.10 0.00 0.00 2.24
376 377 2.047655 TTGGCGCGAGGTGGTAAG 60.048 61.111 12.10 0.00 0.00 2.34
377 378 1.534336 TAGTTGGCGCGAGGTGGTAA 61.534 55.000 12.10 0.00 0.00 2.85
378 379 1.534336 TTAGTTGGCGCGAGGTGGTA 61.534 55.000 12.10 0.00 0.00 3.25
379 380 2.386064 TTTAGTTGGCGCGAGGTGGT 62.386 55.000 12.10 0.00 0.00 4.16
380 381 1.635663 CTTTAGTTGGCGCGAGGTGG 61.636 60.000 12.10 0.00 0.00 4.61
381 382 0.949105 ACTTTAGTTGGCGCGAGGTG 60.949 55.000 12.10 0.00 0.00 4.00
382 383 0.250166 AACTTTAGTTGGCGCGAGGT 60.250 50.000 12.10 0.00 36.80 3.85
383 384 2.540145 AACTTTAGTTGGCGCGAGG 58.460 52.632 12.10 0.00 36.80 4.63
391 392 9.279904 TGAACGTTTTCATAACAACTTTAGTTG 57.720 29.630 18.46 18.46 46.50 3.16
392 393 9.498307 CTGAACGTTTTCATAACAACTTTAGTT 57.502 29.630 0.46 0.00 41.05 2.24
393 394 8.126700 CCTGAACGTTTTCATAACAACTTTAGT 58.873 33.333 0.46 0.00 41.05 2.24
394 395 7.112984 GCCTGAACGTTTTCATAACAACTTTAG 59.887 37.037 0.46 0.00 41.05 1.85
395 396 6.913673 GCCTGAACGTTTTCATAACAACTTTA 59.086 34.615 0.46 0.00 41.05 1.85
396 397 5.746721 GCCTGAACGTTTTCATAACAACTTT 59.253 36.000 0.46 0.00 41.05 2.66
397 398 5.067283 AGCCTGAACGTTTTCATAACAACTT 59.933 36.000 0.46 0.00 41.05 2.66
398 399 4.578928 AGCCTGAACGTTTTCATAACAACT 59.421 37.500 0.46 0.00 41.05 3.16
399 400 4.675114 CAGCCTGAACGTTTTCATAACAAC 59.325 41.667 0.46 0.00 41.05 3.32
400 401 4.336993 ACAGCCTGAACGTTTTCATAACAA 59.663 37.500 0.46 0.00 41.05 2.83
401 402 3.880490 ACAGCCTGAACGTTTTCATAACA 59.120 39.130 0.46 0.00 41.05 2.41
402 403 4.024387 TGACAGCCTGAACGTTTTCATAAC 60.024 41.667 0.46 0.00 41.05 1.89
403 404 4.130857 TGACAGCCTGAACGTTTTCATAA 58.869 39.130 0.46 0.00 41.05 1.90
404 405 3.734463 TGACAGCCTGAACGTTTTCATA 58.266 40.909 0.46 0.00 41.05 2.15
405 406 2.571212 TGACAGCCTGAACGTTTTCAT 58.429 42.857 0.46 0.00 41.05 2.57
406 407 2.031258 TGACAGCCTGAACGTTTTCA 57.969 45.000 0.46 0.00 39.55 2.69
407 408 2.918131 GCATGACAGCCTGAACGTTTTC 60.918 50.000 0.46 0.00 0.00 2.29
408 409 1.001378 GCATGACAGCCTGAACGTTTT 60.001 47.619 0.46 0.00 0.00 2.43
409 410 0.593128 GCATGACAGCCTGAACGTTT 59.407 50.000 0.46 0.00 0.00 3.60
410 411 0.250467 AGCATGACAGCCTGAACGTT 60.250 50.000 0.00 0.00 34.23 3.99
411 412 0.250467 AAGCATGACAGCCTGAACGT 60.250 50.000 0.00 0.00 34.23 3.99
412 413 1.725641 TAAGCATGACAGCCTGAACG 58.274 50.000 0.00 0.00 34.23 3.95
413 414 3.503748 ACTTTAAGCATGACAGCCTGAAC 59.496 43.478 0.00 0.00 34.23 3.18
414 415 3.753272 GACTTTAAGCATGACAGCCTGAA 59.247 43.478 0.00 0.00 34.23 3.02
415 416 3.338249 GACTTTAAGCATGACAGCCTGA 58.662 45.455 0.00 0.00 34.23 3.86
416 417 2.421424 GGACTTTAAGCATGACAGCCTG 59.579 50.000 0.00 0.00 34.23 4.85
417 418 2.716217 GGACTTTAAGCATGACAGCCT 58.284 47.619 0.00 0.00 34.23 4.58
418 419 1.398390 CGGACTTTAAGCATGACAGCC 59.602 52.381 0.00 0.00 34.23 4.85
419 420 2.346803 TCGGACTTTAAGCATGACAGC 58.653 47.619 0.00 0.00 0.00 4.40
420 421 4.452455 ACTTTCGGACTTTAAGCATGACAG 59.548 41.667 0.00 0.00 0.00 3.51
421 422 4.385825 ACTTTCGGACTTTAAGCATGACA 58.614 39.130 0.00 0.00 0.00 3.58
422 423 5.358298 AACTTTCGGACTTTAAGCATGAC 57.642 39.130 0.00 0.00 0.00 3.06
423 424 5.278266 CCAAACTTTCGGACTTTAAGCATGA 60.278 40.000 0.00 0.00 0.00 3.07
424 425 4.917415 CCAAACTTTCGGACTTTAAGCATG 59.083 41.667 0.00 0.00 0.00 4.06
425 426 4.022329 CCCAAACTTTCGGACTTTAAGCAT 60.022 41.667 0.00 0.00 0.00 3.79
426 427 3.316868 CCCAAACTTTCGGACTTTAAGCA 59.683 43.478 0.00 0.00 0.00 3.91
427 428 3.566742 TCCCAAACTTTCGGACTTTAAGC 59.433 43.478 0.00 0.00 0.00 3.09
428 429 5.959618 ATCCCAAACTTTCGGACTTTAAG 57.040 39.130 0.00 0.00 0.00 1.85
429 430 6.718522 AAATCCCAAACTTTCGGACTTTAA 57.281 33.333 0.00 0.00 0.00 1.52
430 431 6.999871 AGTAAATCCCAAACTTTCGGACTTTA 59.000 34.615 0.00 0.00 0.00 1.85
431 432 5.831525 AGTAAATCCCAAACTTTCGGACTTT 59.168 36.000 0.00 0.00 0.00 2.66
432 433 5.240844 CAGTAAATCCCAAACTTTCGGACTT 59.759 40.000 0.00 0.00 0.00 3.01
433 434 4.760204 CAGTAAATCCCAAACTTTCGGACT 59.240 41.667 0.00 0.00 0.00 3.85
434 435 4.082949 CCAGTAAATCCCAAACTTTCGGAC 60.083 45.833 0.00 0.00 0.00 4.79
435 436 4.076394 CCAGTAAATCCCAAACTTTCGGA 58.924 43.478 0.00 0.00 0.00 4.55
436 437 3.192633 CCCAGTAAATCCCAAACTTTCGG 59.807 47.826 0.00 0.00 0.00 4.30
437 438 3.824443 ACCCAGTAAATCCCAAACTTTCG 59.176 43.478 0.00 0.00 0.00 3.46
438 439 4.830600 TGACCCAGTAAATCCCAAACTTTC 59.169 41.667 0.00 0.00 0.00 2.62
439 440 4.810345 TGACCCAGTAAATCCCAAACTTT 58.190 39.130 0.00 0.00 0.00 2.66
440 441 4.105697 TCTGACCCAGTAAATCCCAAACTT 59.894 41.667 0.00 0.00 32.61 2.66
441 442 3.655777 TCTGACCCAGTAAATCCCAAACT 59.344 43.478 0.00 0.00 32.61 2.66
442 443 4.028993 TCTGACCCAGTAAATCCCAAAC 57.971 45.455 0.00 0.00 32.61 2.93
443 444 4.733077 TTCTGACCCAGTAAATCCCAAA 57.267 40.909 0.00 0.00 32.61 3.28
444 445 4.733077 TTTCTGACCCAGTAAATCCCAA 57.267 40.909 0.00 0.00 32.61 4.12
445 446 4.733077 TTTTCTGACCCAGTAAATCCCA 57.267 40.909 0.00 0.00 28.62 4.37
446 447 5.480422 ACATTTTTCTGACCCAGTAAATCCC 59.520 40.000 0.00 0.00 32.53 3.85
447 448 6.389906 CACATTTTTCTGACCCAGTAAATCC 58.610 40.000 0.00 0.00 32.53 3.01
448 449 5.863935 GCACATTTTTCTGACCCAGTAAATC 59.136 40.000 0.00 0.00 32.53 2.17
449 450 5.304101 TGCACATTTTTCTGACCCAGTAAAT 59.696 36.000 0.00 0.00 32.53 1.40
450 451 4.646945 TGCACATTTTTCTGACCCAGTAAA 59.353 37.500 0.00 0.00 30.99 2.01
451 452 4.211125 TGCACATTTTTCTGACCCAGTAA 58.789 39.130 0.00 0.00 32.61 2.24
452 453 3.826524 TGCACATTTTTCTGACCCAGTA 58.173 40.909 0.00 0.00 32.61 2.74
453 454 2.665165 TGCACATTTTTCTGACCCAGT 58.335 42.857 0.00 0.00 32.61 4.00
454 455 3.947910 ATGCACATTTTTCTGACCCAG 57.052 42.857 0.00 0.00 0.00 4.45
455 456 4.148079 TGTATGCACATTTTTCTGACCCA 58.852 39.130 0.00 0.00 0.00 4.51
456 457 4.782019 TGTATGCACATTTTTCTGACCC 57.218 40.909 0.00 0.00 0.00 4.46
468 469 6.934056 AGGAATTGCTAAAAATGTATGCACA 58.066 32.000 0.00 0.00 39.52 4.57
469 470 7.545265 TCAAGGAATTGCTAAAAATGTATGCAC 59.455 33.333 0.00 0.00 33.13 4.57
470 471 7.545265 GTCAAGGAATTGCTAAAAATGTATGCA 59.455 33.333 0.00 0.00 0.00 3.96
471 472 7.253750 CGTCAAGGAATTGCTAAAAATGTATGC 60.254 37.037 0.00 0.00 0.00 3.14
472 473 7.754924 ACGTCAAGGAATTGCTAAAAATGTATG 59.245 33.333 0.00 0.00 0.00 2.39
473 474 7.826690 ACGTCAAGGAATTGCTAAAAATGTAT 58.173 30.769 0.00 0.00 0.00 2.29
474 475 7.209471 ACGTCAAGGAATTGCTAAAAATGTA 57.791 32.000 0.00 0.00 0.00 2.29
475 476 6.084326 ACGTCAAGGAATTGCTAAAAATGT 57.916 33.333 0.00 0.00 0.00 2.71
489 490 1.699730 TTCTCACAGGACGTCAAGGA 58.300 50.000 18.91 7.98 0.00 3.36
495 496 2.240279 AGTAGCTTTCTCACAGGACGT 58.760 47.619 0.00 0.00 0.00 4.34
528 536 5.457148 CGGCTTCGCTATGAGATGATAATAC 59.543 44.000 0.00 0.00 0.00 1.89
529 537 5.450550 CCGGCTTCGCTATGAGATGATAATA 60.451 44.000 0.00 0.00 0.00 0.98
530 538 4.428209 CGGCTTCGCTATGAGATGATAAT 58.572 43.478 0.00 0.00 0.00 1.28
531 539 3.367395 CCGGCTTCGCTATGAGATGATAA 60.367 47.826 0.00 0.00 0.00 1.75
598 607 0.320160 AACGAACCGAGTAACCTGCC 60.320 55.000 0.00 0.00 0.00 4.85
606 615 0.748450 TGAAGTCCAACGAACCGAGT 59.252 50.000 0.00 0.00 0.00 4.18
780 789 5.755409 TTGACAAATGGAGGTAAGCTCTA 57.245 39.130 0.00 0.00 0.00 2.43
812 821 4.687483 ACGTGGAGGTAAACTACGATTTTG 59.313 41.667 10.30 0.00 42.94 2.44
921 930 1.408822 GGATTTGGGGTGATCGAAGCT 60.409 52.381 0.00 0.00 0.00 3.74
923 932 1.680338 GGGATTTGGGGTGATCGAAG 58.320 55.000 0.00 0.00 0.00 3.79
936 945 1.341976 CGACTTGGGGAATGGGGATTT 60.342 52.381 0.00 0.00 0.00 2.17
1136 1175 6.150641 CCACCTTCCATGCATAGATTAGATTG 59.849 42.308 0.00 0.00 0.00 2.67
1157 1196 2.517402 TTGTCACCGGCAACCACC 60.517 61.111 0.00 0.00 0.00 4.61
1170 1209 1.129058 AGATCCATACCCCGGTTGTC 58.871 55.000 0.00 0.00 0.00 3.18
1176 1215 0.979665 AGCATCAGATCCATACCCCG 59.020 55.000 0.00 0.00 0.00 5.73
1393 1432 2.158900 CCTGGTGGCGTAGATGAAGAAT 60.159 50.000 0.00 0.00 0.00 2.40
1437 1480 1.942677 TGAACGCCGAAAAGAGACAA 58.057 45.000 0.00 0.00 0.00 3.18
1462 1516 6.406400 GCTAGGGGCAGATCTTGTATACATAG 60.406 46.154 6.36 7.45 41.35 2.23
1518 1587 2.390599 GCACGCCGAGCATCTTCAA 61.391 57.895 0.54 0.00 0.00 2.69
1777 1846 6.038271 GTGTGTGTACATTATCCTTTCCCATC 59.962 42.308 0.00 0.00 39.39 3.51
1799 1868 5.497474 ACGATGCTTAAAATAGGAAGGTGT 58.503 37.500 0.00 0.00 0.00 4.16
1894 1964 2.602878 CATGCAAGGCAACATCTTGTC 58.397 47.619 0.00 0.00 43.62 3.18
1919 1989 9.332502 TGTATGCGTTTTGACCTAACATATAAT 57.667 29.630 0.00 0.00 0.00 1.28
1938 2008 4.937696 TGTGGTGAATAAACTGTATGCG 57.062 40.909 0.00 0.00 0.00 4.73
2059 2373 1.009675 CACTCAACAGCCAACACGC 60.010 57.895 0.00 0.00 0.00 5.34
2124 2442 4.560136 TCTGATGAAGTGCTAGATCGTC 57.440 45.455 0.00 0.00 0.00 4.20
2125 2443 6.208402 ACATATCTGATGAAGTGCTAGATCGT 59.792 38.462 0.00 0.00 31.19 3.73
2126 2444 6.527372 CACATATCTGATGAAGTGCTAGATCG 59.473 42.308 0.00 0.00 31.19 3.69
2184 2534 3.350833 AGGGTCACAAGATGCAAAGATC 58.649 45.455 0.00 0.00 0.00 2.75
2202 2553 0.969149 GAGTTGGCAAAAGGGAAGGG 59.031 55.000 0.00 0.00 0.00 3.95
2223 2574 8.163408 CCATTAATTAGGATATCACCACCTCAA 58.837 37.037 4.83 0.00 35.52 3.02
2271 2631 0.394216 CGGGATGGAGCCAATGTTGA 60.394 55.000 0.00 0.00 0.00 3.18
2300 2666 2.367567 GTTGAACTCTACACCTGGACCA 59.632 50.000 0.00 0.00 0.00 4.02
2329 2697 5.102953 TCACTGGATAATTAACAGCAGCT 57.897 39.130 16.24 0.00 35.70 4.24
2344 2712 4.819105 ACGAGGAAACATATTCACTGGA 57.181 40.909 0.00 0.00 0.00 3.86
2373 2741 8.635983 CACACGTCTCATTAAATATATACCGTG 58.364 37.037 0.00 0.00 44.33 4.94
2376 2744 8.758633 AGCACACGTCTCATTAAATATATACC 57.241 34.615 0.00 0.00 0.00 2.73
2408 2782 3.126171 GCACAATATTACGTTCACCAGCA 59.874 43.478 0.00 0.00 0.00 4.41
2409 2783 3.374058 AGCACAATATTACGTTCACCAGC 59.626 43.478 0.00 0.00 0.00 4.85
2601 2991 4.626042 AGTTAGATCGATGCATGGAGTTC 58.374 43.478 16.78 10.35 0.00 3.01
2654 3056 2.030562 CCAAAGACGGCACCGAGT 59.969 61.111 17.40 0.00 42.83 4.18
2857 3270 1.094785 GCTAAAAATCTCTGCCGCCA 58.905 50.000 0.00 0.00 0.00 5.69
2887 3300 9.856488 TCTTGTGCTAAATTAACTACTACTCAG 57.144 33.333 0.00 0.00 0.00 3.35
2924 3337 4.385825 GCACCATCATCCGGAATTAACTA 58.614 43.478 9.01 0.00 0.00 2.24
3050 3463 5.535030 TCACGCAGGCCCATATATAGTATAG 59.465 44.000 0.00 0.00 0.00 1.31
3064 3478 0.886043 TCATGCATATCACGCAGGCC 60.886 55.000 0.00 0.00 43.88 5.19
3104 3558 9.705290 AACCAAAGGTTGATTTTATCATAACAC 57.295 29.630 0.00 0.00 45.07 3.32
3179 3633 8.857098 AGATAGCAGATGTGATTATGCAAAAAT 58.143 29.630 0.00 0.00 41.14 1.82
3225 3725 5.825151 GCTTCTATGGGAGATAGCAGTTTTT 59.175 40.000 0.00 0.00 37.82 1.94
3226 3726 5.372373 GCTTCTATGGGAGATAGCAGTTTT 58.628 41.667 0.00 0.00 37.82 2.43
3227 3727 4.502259 CGCTTCTATGGGAGATAGCAGTTT 60.502 45.833 0.00 0.00 37.79 2.66
3228 3728 3.006323 CGCTTCTATGGGAGATAGCAGTT 59.994 47.826 0.00 0.00 37.79 3.16
3229 3729 2.560542 CGCTTCTATGGGAGATAGCAGT 59.439 50.000 0.00 0.00 37.79 4.40
3445 3959 3.378112 TGTTGTGAAAAGAGCTTGGACAG 59.622 43.478 0.00 0.00 0.00 3.51
3737 4263 3.023591 GCTTTTAACTCGCGCCGCT 62.024 57.895 7.78 0.00 0.00 5.52
3777 4303 2.169561 GTGAAACCCCAAATGTGGTGTT 59.830 45.455 0.00 0.00 46.28 3.32
3778 4304 1.760029 GTGAAACCCCAAATGTGGTGT 59.240 47.619 0.00 0.00 44.30 4.16
3779 4305 2.038659 AGTGAAACCCCAAATGTGGTG 58.961 47.619 0.00 0.00 44.30 4.17
3780 4306 2.433970 CAAGTGAAACCCCAAATGTGGT 59.566 45.455 0.00 0.00 44.30 4.16
3781 4307 2.806382 GCAAGTGAAACCCCAAATGTGG 60.806 50.000 0.00 0.00 45.53 4.17
3782 4308 2.482864 GCAAGTGAAACCCCAAATGTG 58.517 47.619 0.00 0.00 37.80 3.21
3783 4309 1.068434 CGCAAGTGAAACCCCAAATGT 59.932 47.619 0.00 0.00 37.80 2.71
3784 4310 1.339610 TCGCAAGTGAAACCCCAAATG 59.660 47.619 0.00 0.00 37.80 2.32
3785 4311 1.698506 TCGCAAGTGAAACCCCAAAT 58.301 45.000 0.00 0.00 37.80 2.32
3786 4312 1.475403 TTCGCAAGTGAAACCCCAAA 58.525 45.000 0.00 0.00 37.80 3.28
3787 4313 1.475403 TTTCGCAAGTGAAACCCCAA 58.525 45.000 4.79 0.00 37.80 4.12
3788 4314 1.475403 TTTTCGCAAGTGAAACCCCA 58.525 45.000 8.19 0.00 37.57 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.