Multiple sequence alignment - TraesCS1A01G360100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G360100 chr1A 100.000 2312 0 0 1 2312 541461785 541459474 0.000000e+00 4270.0
1 TraesCS1A01G360100 chr1A 85.070 1641 131 52 715 2302 541343537 541345116 0.000000e+00 1568.0
2 TraesCS1A01G360100 chr1A 97.053 543 15 1 772 1313 543928135 543928677 0.000000e+00 913.0
3 TraesCS1A01G360100 chr1A 84.574 564 49 12 1 546 456652610 456653153 2.030000e-145 525.0
4 TraesCS1A01G360100 chr1A 87.088 364 37 5 1898 2255 456654523 456654882 9.950000e-109 403.0
5 TraesCS1A01G360100 chr1A 87.748 302 26 7 274 574 541343194 541343485 2.200000e-90 342.0
6 TraesCS1A01G360100 chr1A 89.796 98 8 2 478 574 487572594 487572690 8.670000e-25 124.0
7 TraesCS1A01G360100 chr1A 78.981 157 14 13 1432 1574 456654119 456654270 3.160000e-14 89.8
8 TraesCS1A01G360100 chr3D 85.880 1381 108 37 713 2020 114881015 114879649 0.000000e+00 1389.0
9 TraesCS1A01G360100 chr3D 89.394 198 17 3 2117 2312 114879611 114879416 1.770000e-61 246.0
10 TraesCS1A01G360100 chr3A 83.537 1555 131 40 713 2153 111104418 111102875 0.000000e+00 1338.0
11 TraesCS1A01G360100 chr1D 86.411 1251 97 41 704 1896 445367113 445365878 0.000000e+00 1301.0
12 TraesCS1A01G360100 chr1D 86.137 1183 112 29 735 1896 355827820 355828971 0.000000e+00 1229.0
13 TraesCS1A01G360100 chr1D 86.862 784 72 20 729 1494 388603359 388604129 0.000000e+00 848.0
14 TraesCS1A01G360100 chr1D 88.663 591 44 10 1 574 446438816 446439400 0.000000e+00 699.0
15 TraesCS1A01G360100 chr1D 85.336 566 56 10 4 546 355827007 355827568 5.580000e-156 560.0
16 TraesCS1A01G360100 chr1D 88.389 422 38 7 1899 2312 355829003 355829421 4.440000e-137 497.0
17 TraesCS1A01G360100 chr1D 88.337 403 33 5 1902 2302 446477087 446477477 2.690000e-129 472.0
18 TraesCS1A01G360100 chr1D 79.470 151 22 7 1330 1480 394490842 394490701 5.260000e-17 99.0
19 TraesCS1A01G360100 chr1B 86.422 1171 89 37 738 1855 607317032 607315879 0.000000e+00 1218.0
20 TraesCS1A01G360100 chr1B 88.317 1010 70 20 733 1702 608043027 608042026 0.000000e+00 1168.0
21 TraesCS1A01G360100 chr1B 84.459 1229 96 51 733 1896 610892995 610894193 0.000000e+00 1123.0
22 TraesCS1A01G360100 chr1B 86.727 987 84 27 733 1704 608335898 608334944 0.000000e+00 1053.0
23 TraesCS1A01G360100 chr1B 87.500 584 47 11 1 565 610562475 610563051 0.000000e+00 651.0
24 TraesCS1A01G360100 chr1B 87.593 403 34 6 1902 2302 610894225 610894613 9.740000e-124 453.0
25 TraesCS1A01G360100 chr1B 88.411 302 28 3 275 574 608353397 608353101 7.860000e-95 357.0
26 TraesCS1A01G360100 chr1B 85.185 270 26 8 1898 2156 608042012 608041746 4.900000e-67 265.0
27 TraesCS1A01G360100 chr1B 88.776 98 9 2 478 574 521768233 521768329 4.040000e-23 119.0
28 TraesCS1A01G360100 chr3B 84.759 374 34 8 1939 2312 168137276 168136926 1.020000e-93 353.0
29 TraesCS1A01G360100 chr6A 89.401 217 17 4 334 548 67140679 67140467 3.790000e-68 268.0
30 TraesCS1A01G360100 chr6D 86.550 171 18 4 392 560 47871571 47871738 1.410000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G360100 chr1A 541459474 541461785 2311 True 4270.000000 4270 100.000000 1 2312 1 chr1A.!!$R1 2311
1 TraesCS1A01G360100 chr1A 541343194 541345116 1922 False 955.000000 1568 86.409000 274 2302 2 chr1A.!!$F4 2028
2 TraesCS1A01G360100 chr1A 543928135 543928677 542 False 913.000000 913 97.053000 772 1313 1 chr1A.!!$F2 541
3 TraesCS1A01G360100 chr1A 456652610 456654882 2272 False 339.266667 525 83.547667 1 2255 3 chr1A.!!$F3 2254
4 TraesCS1A01G360100 chr3D 114879416 114881015 1599 True 817.500000 1389 87.637000 713 2312 2 chr3D.!!$R1 1599
5 TraesCS1A01G360100 chr3A 111102875 111104418 1543 True 1338.000000 1338 83.537000 713 2153 1 chr3A.!!$R1 1440
6 TraesCS1A01G360100 chr1D 445365878 445367113 1235 True 1301.000000 1301 86.411000 704 1896 1 chr1D.!!$R2 1192
7 TraesCS1A01G360100 chr1D 388603359 388604129 770 False 848.000000 848 86.862000 729 1494 1 chr1D.!!$F1 765
8 TraesCS1A01G360100 chr1D 355827007 355829421 2414 False 762.000000 1229 86.620667 4 2312 3 chr1D.!!$F4 2308
9 TraesCS1A01G360100 chr1D 446438816 446439400 584 False 699.000000 699 88.663000 1 574 1 chr1D.!!$F2 573
10 TraesCS1A01G360100 chr1B 607315879 607317032 1153 True 1218.000000 1218 86.422000 738 1855 1 chr1B.!!$R1 1117
11 TraesCS1A01G360100 chr1B 608334944 608335898 954 True 1053.000000 1053 86.727000 733 1704 1 chr1B.!!$R2 971
12 TraesCS1A01G360100 chr1B 610892995 610894613 1618 False 788.000000 1123 86.026000 733 2302 2 chr1B.!!$F3 1569
13 TraesCS1A01G360100 chr1B 608041746 608043027 1281 True 716.500000 1168 86.751000 733 2156 2 chr1B.!!$R4 1423
14 TraesCS1A01G360100 chr1B 610562475 610563051 576 False 651.000000 651 87.500000 1 565 1 chr1B.!!$F2 564


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 713 0.041839 CAAGAACACGACACAGCAGC 60.042 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2217 1.133294 TGTGTACACCCAGACCTCTGA 60.133 52.381 22.91 0.0 46.59 3.27 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 152 5.285651 GTCTCTATGACGGGAGAAGATTTG 58.714 45.833 0.00 0.00 39.81 2.32
146 167 5.065731 GGAGAAGATTTGTAATGGCACTCTG 59.934 44.000 0.00 0.00 0.00 3.35
147 168 5.564550 AGAAGATTTGTAATGGCACTCTGT 58.435 37.500 0.00 0.00 0.00 3.41
154 175 0.603707 AATGGCACTCTGTCGTGTGG 60.604 55.000 0.00 0.00 37.24 4.17
164 185 1.872952 CTGTCGTGTGGCTCAAAATGA 59.127 47.619 0.00 0.00 0.00 2.57
180 219 5.356190 TCAAAATGAATGCAGAGCTTCTAGG 59.644 40.000 0.00 0.00 0.00 3.02
247 286 9.918630 AAAGTGTTATCTGAATCCTTGAATTTG 57.081 29.630 0.00 0.00 0.00 2.32
310 350 1.297893 GATGCATTGCGTTCGAGCC 60.298 57.895 0.00 0.00 36.02 4.70
378 421 6.830324 TGAAGGAATAAGAATCTGTCATTGGG 59.170 38.462 0.00 0.00 0.00 4.12
379 422 6.332976 AGGAATAAGAATCTGTCATTGGGT 57.667 37.500 0.00 0.00 0.00 4.51
380 423 6.125029 AGGAATAAGAATCTGTCATTGGGTG 58.875 40.000 0.00 0.00 0.00 4.61
381 424 5.300286 GGAATAAGAATCTGTCATTGGGTGG 59.700 44.000 0.00 0.00 0.00 4.61
416 459 4.155826 AGCAACGCAGCAAGTATATCAAAA 59.844 37.500 2.40 0.00 36.85 2.44
467 510 6.831353 TGACTTATCTTGTTTTCTGGGTTTGA 59.169 34.615 0.00 0.00 0.00 2.69
566 609 8.862325 TTCCACAGACACATTACAATATTTCT 57.138 30.769 0.00 0.00 0.00 2.52
567 610 9.952030 TTCCACAGACACATTACAATATTTCTA 57.048 29.630 0.00 0.00 0.00 2.10
568 611 9.952030 TCCACAGACACATTACAATATTTCTAA 57.048 29.630 0.00 0.00 0.00 2.10
626 669 5.935789 TCTTTCTTTGATACCTACGGGTTTG 59.064 40.000 0.00 0.00 44.73 2.93
627 670 4.210724 TCTTTGATACCTACGGGTTTGG 57.789 45.455 0.00 0.00 44.73 3.28
628 671 3.839490 TCTTTGATACCTACGGGTTTGGA 59.161 43.478 0.00 0.00 44.73 3.53
630 673 2.538222 TGATACCTACGGGTTTGGACA 58.462 47.619 0.00 0.00 44.73 4.02
631 674 2.234414 TGATACCTACGGGTTTGGACAC 59.766 50.000 0.00 0.00 44.73 3.67
632 675 0.975887 TACCTACGGGTTTGGACACC 59.024 55.000 0.00 0.00 44.73 4.16
633 676 1.055551 ACCTACGGGTTTGGACACCA 61.056 55.000 0.00 0.00 44.73 4.17
634 677 0.326927 CCTACGGGTTTGGACACCAT 59.673 55.000 0.00 0.00 38.79 3.55
635 678 1.677820 CCTACGGGTTTGGACACCATC 60.678 57.143 0.00 0.00 38.79 3.51
670 713 0.041839 CAAGAACACGACACAGCAGC 60.042 55.000 0.00 0.00 0.00 5.25
671 714 0.461870 AAGAACACGACACAGCAGCA 60.462 50.000 0.00 0.00 0.00 4.41
672 715 0.250038 AGAACACGACACAGCAGCAT 60.250 50.000 0.00 0.00 0.00 3.79
674 717 1.002468 GAACACGACACAGCAGCATTT 60.002 47.619 0.00 0.00 0.00 2.32
675 718 1.024271 ACACGACACAGCAGCATTTT 58.976 45.000 0.00 0.00 0.00 1.82
676 719 1.405105 ACACGACACAGCAGCATTTTT 59.595 42.857 0.00 0.00 0.00 1.94
702 745 3.284323 TGAGTAGAACGACACAGAAGC 57.716 47.619 0.00 0.00 0.00 3.86
767 1028 4.385405 GCCGCCACAGCTCTGACT 62.385 66.667 3.60 0.00 36.60 3.41
816 1078 4.429212 CCACGTCACCGATCCGCA 62.429 66.667 0.00 0.00 37.88 5.69
820 1082 3.188786 GTCACCGATCCGCAGCAC 61.189 66.667 0.00 0.00 0.00 4.40
841 1103 3.848347 CTCACCCGGATCGCCATCG 62.848 68.421 0.73 0.00 0.00 3.84
852 1114 2.186903 GCCATCGTGACCGTCCAT 59.813 61.111 0.00 0.00 35.01 3.41
1314 1617 2.504519 GGATTCGGCGGCTAGGTT 59.495 61.111 7.21 0.00 0.00 3.50
1317 1620 0.179081 GATTCGGCGGCTAGGTTCTT 60.179 55.000 7.21 0.00 0.00 2.52
1318 1621 0.252197 ATTCGGCGGCTAGGTTCTTT 59.748 50.000 7.21 0.00 0.00 2.52
1319 1622 0.672401 TTCGGCGGCTAGGTTCTTTG 60.672 55.000 7.21 0.00 0.00 2.77
1320 1623 2.750888 CGGCGGCTAGGTTCTTTGC 61.751 63.158 7.61 0.00 0.00 3.68
1342 1702 0.819582 CCGCCTGCAGATTCCAAAAT 59.180 50.000 17.39 0.00 0.00 1.82
1423 1791 7.360361 ACTGAATCGTGGAACAAAGTTATTTC 58.640 34.615 0.00 0.00 44.16 2.17
1424 1792 7.012894 ACTGAATCGTGGAACAAAGTTATTTCA 59.987 33.333 0.00 0.00 44.16 2.69
1425 1793 7.881142 TGAATCGTGGAACAAAGTTATTTCAT 58.119 30.769 0.00 0.00 44.16 2.57
1481 1859 5.633182 GCAAATGCCGTCTTTCTGATTTTTA 59.367 36.000 0.00 0.00 34.31 1.52
1538 1938 8.947055 ATGAGTTGATTTGCCATAATTTTACC 57.053 30.769 0.00 0.00 0.00 2.85
1541 1941 5.923733 TGATTTGCCATAATTTTACCGGT 57.076 34.783 13.98 13.98 0.00 5.28
1574 1991 4.104776 CCGTATTTGTTTGCAGGCTAATG 58.895 43.478 8.60 0.00 0.00 1.90
1581 1998 5.309323 TGTTTGCAGGCTAATGTGTAATC 57.691 39.130 0.00 0.00 0.00 1.75
1642 2059 6.209986 TCTCAATTCAGGAACATCATTTGCTT 59.790 34.615 0.00 0.00 0.00 3.91
1684 2101 4.881273 TGATGCATTTATACTGGACACCAC 59.119 41.667 0.00 0.00 0.00 4.16
1696 2113 3.738982 TGGACACCACTGATGTTACTTG 58.261 45.455 0.00 0.00 0.00 3.16
1709 2128 2.223688 TGTTACTTGTGGTGCAATGTGC 60.224 45.455 0.00 0.00 45.29 4.57
1720 2140 3.428045 GGTGCAATGTGCTTAATGGAGAC 60.428 47.826 1.43 0.00 45.31 3.36
1775 2217 6.007076 TCTAGATTCAGTCGCTATCCTTGAT 58.993 40.000 0.00 0.00 0.00 2.57
1781 2223 2.890311 AGTCGCTATCCTTGATCAGAGG 59.110 50.000 14.40 14.40 35.53 3.69
1794 2236 1.629043 TCAGAGGTCTGGGTGTACAC 58.371 55.000 18.01 18.01 43.91 2.90
1823 2270 6.646653 TGCTCTGACTTGTAATGTGAAACTAG 59.353 38.462 0.00 0.00 38.04 2.57
1825 2272 5.932303 TCTGACTTGTAATGTGAAACTAGCC 59.068 40.000 0.00 0.00 38.04 3.93
1848 2295 4.943093 CCACAGTGACCAATTCATGATGTA 59.057 41.667 0.62 0.00 36.32 2.29
1850 2297 4.637534 ACAGTGACCAATTCATGATGTAGC 59.362 41.667 0.00 0.00 36.32 3.58
1869 2319 2.452105 GCTCGTGCTAACTGCTAGTAC 58.548 52.381 1.41 0.00 43.37 2.73
1896 2346 4.931661 AATCAGGATCATCATTTGTGCC 57.068 40.909 0.00 0.00 0.00 5.01
1940 2428 0.537143 TTGTGCTTCCAACTGCGGAT 60.537 50.000 0.00 0.00 34.19 4.18
1945 2433 0.597568 CTTCCAACTGCGGATTTGCA 59.402 50.000 0.00 0.00 43.95 4.08
1962 2456 6.852853 GGATTTGCAAATACAGATACACGATG 59.147 38.462 26.36 0.00 0.00 3.84
2035 2536 4.543692 GTGCAATGATGTATTGGATCTGC 58.456 43.478 0.00 0.00 46.69 4.26
2094 2604 9.579768 CGATAAATGAATACTAATCTCTCCTGG 57.420 37.037 0.00 0.00 0.00 4.45
2108 2618 0.824109 TCCTGGGAAGACATGCTACG 59.176 55.000 0.00 0.00 0.00 3.51
2110 2620 0.179073 CTGGGAAGACATGCTACGGG 60.179 60.000 0.00 0.00 0.00 5.28
2113 2623 1.968493 GGGAAGACATGCTACGGGATA 59.032 52.381 0.00 0.00 0.00 2.59
2180 2691 6.982852 AGTTAGATGGATACTGGTATTCACG 58.017 40.000 4.08 0.00 34.12 4.35
2184 2695 2.703536 TGGATACTGGTATTCACGGCAT 59.296 45.455 0.00 0.00 37.61 4.40
2192 2703 2.671396 GGTATTCACGGCATATTAGCGG 59.329 50.000 0.00 0.00 40.27 5.52
2255 2767 8.481314 AGTATGAAAGATGTCTGCTCATTAGAA 58.519 33.333 11.10 0.00 33.76 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 125 2.025155 TCTCCCGTCATAGAGACTTGC 58.975 52.381 0.00 0.00 45.32 4.01
112 131 5.269505 ACAAATCTTCTCCCGTCATAGAG 57.730 43.478 0.00 0.00 0.00 2.43
116 135 5.126067 CCATTACAAATCTTCTCCCGTCAT 58.874 41.667 0.00 0.00 0.00 3.06
133 152 1.726791 CACACGACAGAGTGCCATTAC 59.273 52.381 0.00 0.00 45.45 1.89
146 167 3.236816 CATTCATTTTGAGCCACACGAC 58.763 45.455 0.00 0.00 0.00 4.34
147 168 2.351641 GCATTCATTTTGAGCCACACGA 60.352 45.455 0.00 0.00 0.00 4.35
154 175 3.505464 AGCTCTGCATTCATTTTGAGC 57.495 42.857 11.24 11.24 44.85 4.26
164 185 2.191400 TGGTCCTAGAAGCTCTGCATT 58.809 47.619 0.00 0.00 0.00 3.56
180 219 4.694339 ACTTAGCGATCAGGTAATTGGTC 58.306 43.478 8.79 0.00 41.37 4.02
269 308 7.926674 TCACTGCTATTCTCATTTTTCATCA 57.073 32.000 0.00 0.00 0.00 3.07
344 387 8.144478 CAGATTCTTATTCCTTCATCCGAACTA 58.856 37.037 0.00 0.00 0.00 2.24
378 421 4.225497 GCTGTAGCATGTCCCCAC 57.775 61.111 0.00 0.00 41.59 4.61
627 670 2.198827 TGTTCATGTGGGATGGTGTC 57.801 50.000 0.00 0.00 0.00 3.67
628 671 2.673775 TTGTTCATGTGGGATGGTGT 57.326 45.000 0.00 0.00 0.00 4.16
630 673 3.010472 TGAGATTGTTCATGTGGGATGGT 59.990 43.478 0.00 0.00 0.00 3.55
631 674 3.623703 TGAGATTGTTCATGTGGGATGG 58.376 45.455 0.00 0.00 0.00 3.51
632 675 4.945543 TCTTGAGATTGTTCATGTGGGATG 59.054 41.667 0.00 0.00 0.00 3.51
633 676 5.183530 TCTTGAGATTGTTCATGTGGGAT 57.816 39.130 0.00 0.00 0.00 3.85
634 677 4.639078 TCTTGAGATTGTTCATGTGGGA 57.361 40.909 0.00 0.00 0.00 4.37
635 678 4.520111 TGTTCTTGAGATTGTTCATGTGGG 59.480 41.667 0.00 0.00 0.00 4.61
636 679 5.455392 GTGTTCTTGAGATTGTTCATGTGG 58.545 41.667 0.00 0.00 0.00 4.17
637 680 5.050159 TCGTGTTCTTGAGATTGTTCATGTG 60.050 40.000 0.00 0.00 0.00 3.21
638 681 5.050091 GTCGTGTTCTTGAGATTGTTCATGT 60.050 40.000 0.00 0.00 0.00 3.21
639 682 5.050159 TGTCGTGTTCTTGAGATTGTTCATG 60.050 40.000 0.00 0.00 0.00 3.07
640 683 5.050091 GTGTCGTGTTCTTGAGATTGTTCAT 60.050 40.000 0.00 0.00 0.00 2.57
641 684 4.270084 GTGTCGTGTTCTTGAGATTGTTCA 59.730 41.667 0.00 0.00 0.00 3.18
678 721 5.006358 GCTTCTGTGTCGTTCTACTCAAAAA 59.994 40.000 0.00 0.00 0.00 1.94
679 722 4.506654 GCTTCTGTGTCGTTCTACTCAAAA 59.493 41.667 0.00 0.00 0.00 2.44
680 723 4.049186 GCTTCTGTGTCGTTCTACTCAAA 58.951 43.478 0.00 0.00 0.00 2.69
681 724 3.318275 AGCTTCTGTGTCGTTCTACTCAA 59.682 43.478 0.00 0.00 0.00 3.02
682 725 2.885266 AGCTTCTGTGTCGTTCTACTCA 59.115 45.455 0.00 0.00 0.00 3.41
683 726 3.189702 AGAGCTTCTGTGTCGTTCTACTC 59.810 47.826 0.00 0.00 0.00 2.59
684 727 3.057876 CAGAGCTTCTGTGTCGTTCTACT 60.058 47.826 0.00 0.00 39.58 2.57
685 728 3.058155 TCAGAGCTTCTGTGTCGTTCTAC 60.058 47.826 11.37 0.00 44.58 2.59
686 729 3.146847 TCAGAGCTTCTGTGTCGTTCTA 58.853 45.455 11.37 0.00 44.58 2.10
687 730 1.957177 TCAGAGCTTCTGTGTCGTTCT 59.043 47.619 11.37 0.00 44.58 3.01
688 731 2.423926 TCAGAGCTTCTGTGTCGTTC 57.576 50.000 11.37 0.00 44.58 3.95
689 732 2.159099 TGTTCAGAGCTTCTGTGTCGTT 60.159 45.455 11.37 0.00 44.58 3.85
690 733 1.409064 TGTTCAGAGCTTCTGTGTCGT 59.591 47.619 11.37 0.00 44.58 4.34
691 734 2.140065 TGTTCAGAGCTTCTGTGTCG 57.860 50.000 11.37 0.00 44.58 4.35
692 735 3.623060 TGTTTGTTCAGAGCTTCTGTGTC 59.377 43.478 11.37 5.93 44.58 3.67
693 736 3.375299 GTGTTTGTTCAGAGCTTCTGTGT 59.625 43.478 11.37 0.00 44.58 3.72
694 737 3.242870 GGTGTTTGTTCAGAGCTTCTGTG 60.243 47.826 11.37 0.00 44.58 3.66
695 738 2.945668 GGTGTTTGTTCAGAGCTTCTGT 59.054 45.455 11.37 0.00 44.58 3.41
699 742 1.308998 CGGGTGTTTGTTCAGAGCTT 58.691 50.000 0.00 0.00 0.00 3.74
702 745 1.515521 GGCCGGGTGTTTGTTCAGAG 61.516 60.000 2.18 0.00 0.00 3.35
767 1028 4.424711 GGTGGATTGGCGGGCTGA 62.425 66.667 0.00 0.00 0.00 4.26
816 1078 4.741239 ATCCGGGTGAGGGGTGCT 62.741 66.667 0.00 0.00 0.00 4.40
841 1103 0.810031 CGGATGGAATGGACGGTCAC 60.810 60.000 10.76 0.17 0.00 3.67
852 1114 4.217035 CGTTGGATGCGGATGGAA 57.783 55.556 0.00 0.00 0.00 3.53
1342 1702 1.003118 CAAGTCGGGGTTCCATCAAGA 59.997 52.381 0.00 0.00 0.00 3.02
1423 1791 7.543172 CAGGTTTCATTTCCAACAACAGATATG 59.457 37.037 0.00 0.00 0.00 1.78
1424 1792 7.233348 ACAGGTTTCATTTCCAACAACAGATAT 59.767 33.333 0.00 0.00 0.00 1.63
1425 1793 6.549364 ACAGGTTTCATTTCCAACAACAGATA 59.451 34.615 0.00 0.00 0.00 1.98
1428 1796 5.009854 ACAGGTTTCATTTCCAACAACAG 57.990 39.130 0.00 0.00 0.00 3.16
1481 1859 5.833667 TCAATATCGTACCCAACAGAGAGAT 59.166 40.000 0.00 0.00 0.00 2.75
1557 1969 5.521906 TTACACATTAGCCTGCAAACAAA 57.478 34.783 0.00 0.00 0.00 2.83
1609 2026 7.335171 TGATGTTCCTGAATTGAGATACACAAG 59.665 37.037 0.00 0.00 0.00 3.16
1642 2059 6.151480 TGCATCAGATCAAATAGCAGAAACAA 59.849 34.615 0.00 0.00 0.00 2.83
1684 2101 4.022935 ACATTGCACCACAAGTAACATCAG 60.023 41.667 0.00 0.00 42.87 2.90
1720 2140 6.294473 AGTATGAAATGCAGACTAATCCCAG 58.706 40.000 0.00 0.00 46.61 4.45
1775 2217 1.133294 TGTGTACACCCAGACCTCTGA 60.133 52.381 22.91 0.00 46.59 3.27
1781 2223 2.484264 GAGCAAATGTGTACACCCAGAC 59.516 50.000 22.91 10.01 0.00 3.51
1794 2236 6.245115 TCACATTACAAGTCAGAGCAAATG 57.755 37.500 0.00 0.00 0.00 2.32
1823 2270 1.203052 CATGAATTGGTCACTGTGGGC 59.797 52.381 8.11 1.52 39.72 5.36
1825 2272 3.760151 ACATCATGAATTGGTCACTGTGG 59.240 43.478 8.11 0.00 39.72 4.17
1869 2319 7.434307 GCACAAATGATGATCCTGATTAACTTG 59.566 37.037 0.00 0.00 0.00 3.16
1940 2428 5.448496 GGCATCGTGTATCTGTATTTGCAAA 60.448 40.000 15.44 15.44 0.00 3.68
1945 2433 4.345257 AGAGGGCATCGTGTATCTGTATTT 59.655 41.667 0.00 0.00 0.00 1.40
1977 2471 2.787994 ACTGAAGGATGAAGTTGCTGG 58.212 47.619 0.00 0.00 0.00 4.85
2094 2604 2.364324 TGTATCCCGTAGCATGTCTTCC 59.636 50.000 0.00 0.00 0.00 3.46
2108 2618 3.139077 GACGGAATGATGGTTGTATCCC 58.861 50.000 0.00 0.00 0.00 3.85
2110 2620 4.693283 TCTGACGGAATGATGGTTGTATC 58.307 43.478 0.00 0.00 0.00 2.24
2113 2623 3.074412 GTTCTGACGGAATGATGGTTGT 58.926 45.455 0.00 0.00 36.24 3.32
2136 2646 4.151883 ACTTGGTATGCTTGTTCCATTGT 58.848 39.130 0.00 0.00 0.00 2.71
2180 2691 3.815401 ACAAGAATGACCGCTAATATGCC 59.185 43.478 0.00 0.00 0.00 4.40
2184 2695 4.380841 ACGACAAGAATGACCGCTAATA 57.619 40.909 0.00 0.00 32.45 0.98
2192 2703 3.626028 AAGCCAAACGACAAGAATGAC 57.374 42.857 0.00 0.00 0.00 3.06



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.