Multiple sequence alignment - TraesCS1A01G360000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G360000 chr1A 100.000 2411 0 0 1 2411 541380379 541382789 0.000000e+00 4453
1 TraesCS1A01G360000 chr1A 92.489 892 48 13 713 1594 542170093 542170975 0.000000e+00 1258
2 TraesCS1A01G360000 chr1A 82.059 1321 152 50 698 1992 542358199 542359460 0.000000e+00 1048
3 TraesCS1A01G360000 chr1A 85.022 908 97 29 698 1582 456650710 456651601 0.000000e+00 887
4 TraesCS1A01G360000 chr1A 82.436 427 39 15 1750 2174 531920050 531920442 8.250000e-90 340
5 TraesCS1A01G360000 chr1A 82.201 427 40 16 1750 2174 552506816 552507208 3.840000e-88 335
6 TraesCS1A01G360000 chr1B 88.896 1522 100 31 698 2194 606839639 606841116 0.000000e+00 1810
7 TraesCS1A01G360000 chr1B 85.264 1174 92 49 451 1601 608463429 608462314 0.000000e+00 1134
8 TraesCS1A01G360000 chr1B 87.917 720 73 13 703 1416 608054128 608053417 0.000000e+00 835
9 TraesCS1A01G360000 chr1B 94.581 203 7 2 2210 2411 606841316 606841515 6.470000e-81 311
10 TraesCS1A01G360000 chr1B 81.679 131 19 3 2239 2369 611134194 611134319 1.180000e-18 104
11 TraesCS1A01G360000 chr1D 89.219 1076 80 20 528 1593 445387445 445386396 0.000000e+00 1312
12 TraesCS1A01G360000 chr1D 92.847 713 44 6 713 1422 446436822 446437530 0.000000e+00 1027
13 TraesCS1A01G360000 chr1D 82.655 1130 132 37 698 1793 446558191 446559290 0.000000e+00 942
14 TraesCS1A01G360000 chr1D 96.018 226 8 1 2187 2411 445318865 445319090 1.360000e-97 366
15 TraesCS1A01G360000 chr7D 83.811 803 73 28 1376 2174 16676085 16676834 0.000000e+00 710
16 TraesCS1A01G360000 chr3A 81.852 810 85 28 1376 2174 722492543 722491785 2.040000e-175 625
17 TraesCS1A01G360000 chr7B 83.333 600 75 16 1376 1973 425856988 425856412 4.560000e-147 531
18 TraesCS1A01G360000 chr7B 82.436 427 36 18 1750 2174 691516019 691515630 1.070000e-88 337
19 TraesCS1A01G360000 chr5B 82.943 598 70 21 1376 1972 667131414 667130848 5.950000e-141 510
20 TraesCS1A01G360000 chr6A 82.670 427 38 16 1750 2174 595963761 595964153 1.770000e-91 346
21 TraesCS1A01G360000 chr2A 82.670 427 38 16 1750 2174 630863635 630863243 1.770000e-91 346
22 TraesCS1A01G360000 chr2B 82.670 427 37 16 1750 2174 710353524 710353915 6.380000e-91 344
23 TraesCS1A01G360000 chr2B 90.196 102 9 1 49 149 161025772 161025873 5.410000e-27 132
24 TraesCS1A01G360000 chr3D 88.448 277 19 10 154 417 324300593 324300317 2.990000e-84 322
25 TraesCS1A01G360000 chr5A 84.615 117 16 2 232 346 673866697 673866581 5.450000e-22 115
26 TraesCS1A01G360000 chr2D 91.463 82 5 2 336 416 423276723 423276803 7.050000e-21 111
27 TraesCS1A01G360000 chr7A 84.071 113 17 1 235 346 313878428 313878540 9.110000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G360000 chr1A 541380379 541382789 2410 False 4453.0 4453 100.0000 1 2411 1 chr1A.!!$F3 2410
1 TraesCS1A01G360000 chr1A 542170093 542170975 882 False 1258.0 1258 92.4890 713 1594 1 chr1A.!!$F4 881
2 TraesCS1A01G360000 chr1A 542358199 542359460 1261 False 1048.0 1048 82.0590 698 1992 1 chr1A.!!$F5 1294
3 TraesCS1A01G360000 chr1A 456650710 456651601 891 False 887.0 887 85.0220 698 1582 1 chr1A.!!$F1 884
4 TraesCS1A01G360000 chr1B 608462314 608463429 1115 True 1134.0 1134 85.2640 451 1601 1 chr1B.!!$R2 1150
5 TraesCS1A01G360000 chr1B 606839639 606841515 1876 False 1060.5 1810 91.7385 698 2411 2 chr1B.!!$F2 1713
6 TraesCS1A01G360000 chr1B 608053417 608054128 711 True 835.0 835 87.9170 703 1416 1 chr1B.!!$R1 713
7 TraesCS1A01G360000 chr1D 445386396 445387445 1049 True 1312.0 1312 89.2190 528 1593 1 chr1D.!!$R1 1065
8 TraesCS1A01G360000 chr1D 446436822 446437530 708 False 1027.0 1027 92.8470 713 1422 1 chr1D.!!$F2 709
9 TraesCS1A01G360000 chr1D 446558191 446559290 1099 False 942.0 942 82.6550 698 1793 1 chr1D.!!$F3 1095
10 TraesCS1A01G360000 chr7D 16676085 16676834 749 False 710.0 710 83.8110 1376 2174 1 chr7D.!!$F1 798
11 TraesCS1A01G360000 chr3A 722491785 722492543 758 True 625.0 625 81.8520 1376 2174 1 chr3A.!!$R1 798
12 TraesCS1A01G360000 chr7B 425856412 425856988 576 True 531.0 531 83.3330 1376 1973 1 chr7B.!!$R1 597
13 TraesCS1A01G360000 chr5B 667130848 667131414 566 True 510.0 510 82.9430 1376 1972 1 chr5B.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.034896 ACAGATTCCCGAACGTGCTT 59.965 50.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2201 0.383949 GCCACACCGTTGACAACATT 59.616 50.0 18.09 1.13 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.147436 TTTTTCATGGCTTCCGTTGC 57.853 45.000 0.00 0.00 0.00 4.17
22 23 1.327303 TTTTCATGGCTTCCGTTGCT 58.673 45.000 0.00 0.00 0.00 3.91
23 24 0.597568 TTTCATGGCTTCCGTTGCTG 59.402 50.000 0.00 0.00 0.00 4.41
24 25 0.250684 TTCATGGCTTCCGTTGCTGA 60.251 50.000 0.00 0.00 0.00 4.26
25 26 0.955428 TCATGGCTTCCGTTGCTGAC 60.955 55.000 0.00 0.00 0.00 3.51
26 27 1.073025 ATGGCTTCCGTTGCTGACA 59.927 52.632 0.00 0.00 0.00 3.58
27 28 0.537143 ATGGCTTCCGTTGCTGACAA 60.537 50.000 0.00 0.00 0.00 3.18
28 29 1.165907 TGGCTTCCGTTGCTGACAAG 61.166 55.000 0.00 0.00 36.16 3.16
39 40 1.689959 GCTGACAAGCCAACGAAATG 58.310 50.000 0.00 0.00 44.22 2.32
40 41 1.666888 GCTGACAAGCCAACGAAATGG 60.667 52.381 0.00 0.00 44.22 3.16
41 42 1.879380 CTGACAAGCCAACGAAATGGA 59.121 47.619 10.15 0.00 43.54 3.41
42 43 1.606668 TGACAAGCCAACGAAATGGAC 59.393 47.619 10.15 3.06 43.54 4.02
43 44 1.606668 GACAAGCCAACGAAATGGACA 59.393 47.619 10.15 0.00 43.54 4.02
44 45 1.608590 ACAAGCCAACGAAATGGACAG 59.391 47.619 10.15 2.43 43.54 3.51
45 46 1.879380 CAAGCCAACGAAATGGACAGA 59.121 47.619 10.15 0.00 43.54 3.41
46 47 2.489329 CAAGCCAACGAAATGGACAGAT 59.511 45.455 10.15 0.00 43.54 2.90
47 48 2.795329 AGCCAACGAAATGGACAGATT 58.205 42.857 10.15 0.00 43.54 2.40
48 49 2.749621 AGCCAACGAAATGGACAGATTC 59.250 45.455 10.15 0.00 43.54 2.52
49 50 2.159379 GCCAACGAAATGGACAGATTCC 60.159 50.000 10.15 0.00 43.54 3.01
50 51 2.423538 CCAACGAAATGGACAGATTCCC 59.576 50.000 0.00 0.00 45.17 3.97
51 52 2.024176 ACGAAATGGACAGATTCCCG 57.976 50.000 0.00 0.00 45.17 5.14
52 53 1.553248 ACGAAATGGACAGATTCCCGA 59.447 47.619 0.00 0.00 45.17 5.14
53 54 2.027561 ACGAAATGGACAGATTCCCGAA 60.028 45.455 0.00 0.00 45.17 4.30
54 55 2.351726 CGAAATGGACAGATTCCCGAAC 59.648 50.000 0.00 0.00 45.17 3.95
55 56 2.024176 AATGGACAGATTCCCGAACG 57.976 50.000 0.00 0.00 45.17 3.95
56 57 0.902531 ATGGACAGATTCCCGAACGT 59.097 50.000 0.00 0.00 45.17 3.99
57 58 0.037697 TGGACAGATTCCCGAACGTG 60.038 55.000 0.00 0.00 45.17 4.49
58 59 1.359459 GGACAGATTCCCGAACGTGC 61.359 60.000 0.00 0.00 38.70 5.34
59 60 0.389948 GACAGATTCCCGAACGTGCT 60.390 55.000 0.00 0.00 0.00 4.40
60 61 0.034896 ACAGATTCCCGAACGTGCTT 59.965 50.000 0.00 0.00 0.00 3.91
61 62 0.443869 CAGATTCCCGAACGTGCTTG 59.556 55.000 0.00 0.00 0.00 4.01
62 63 1.134694 GATTCCCGAACGTGCTTGC 59.865 57.895 0.00 0.00 0.00 4.01
63 64 2.253414 GATTCCCGAACGTGCTTGCC 62.253 60.000 0.00 0.00 0.00 4.52
64 65 3.758973 TTCCCGAACGTGCTTGCCA 62.759 57.895 0.00 0.00 0.00 4.92
65 66 4.025401 CCCGAACGTGCTTGCCAC 62.025 66.667 0.00 0.00 41.15 5.01
72 73 3.667087 GTGCTTGCCACGAATCCA 58.333 55.556 0.00 0.00 34.22 3.41
73 74 2.183409 GTGCTTGCCACGAATCCAT 58.817 52.632 0.00 0.00 34.22 3.41
74 75 0.099436 GTGCTTGCCACGAATCCATC 59.901 55.000 0.00 0.00 34.22 3.51
97 98 6.906659 TCGAAAATAACTCGAAGTAGTGACT 58.093 36.000 0.00 0.00 42.07 3.41
99 100 8.506437 TCGAAAATAACTCGAAGTAGTGACTTA 58.494 33.333 0.00 0.00 46.23 2.24
100 101 8.573801 CGAAAATAACTCGAAGTAGTGACTTAC 58.426 37.037 0.00 0.00 46.23 2.34
101 102 9.403110 GAAAATAACTCGAAGTAGTGACTTACA 57.597 33.333 0.00 0.00 46.23 2.41
102 103 9.754382 AAAATAACTCGAAGTAGTGACTTACAA 57.246 29.630 0.00 0.00 46.23 2.41
103 104 9.754382 AAATAACTCGAAGTAGTGACTTACAAA 57.246 29.630 0.00 0.00 46.23 2.83
104 105 9.754382 AATAACTCGAAGTAGTGACTTACAAAA 57.246 29.630 0.00 0.00 46.23 2.44
105 106 9.754382 ATAACTCGAAGTAGTGACTTACAAAAA 57.246 29.630 0.00 0.00 46.23 1.94
106 107 7.460751 ACTCGAAGTAGTGACTTACAAAAAC 57.539 36.000 0.00 0.00 46.23 2.43
107 108 7.037438 ACTCGAAGTAGTGACTTACAAAAACA 58.963 34.615 0.00 0.00 46.23 2.83
108 109 7.709613 ACTCGAAGTAGTGACTTACAAAAACAT 59.290 33.333 0.00 0.00 46.23 2.71
109 110 8.068893 TCGAAGTAGTGACTTACAAAAACATC 57.931 34.615 0.00 0.00 46.23 3.06
110 111 7.707464 TCGAAGTAGTGACTTACAAAAACATCA 59.293 33.333 0.00 0.00 46.23 3.07
111 112 8.004344 CGAAGTAGTGACTTACAAAAACATCAG 58.996 37.037 0.00 0.00 46.23 2.90
112 113 8.732746 AAGTAGTGACTTACAAAAACATCAGT 57.267 30.769 0.00 0.00 44.36 3.41
113 114 9.826574 AAGTAGTGACTTACAAAAACATCAGTA 57.173 29.630 0.00 0.00 44.36 2.74
114 115 9.477484 AGTAGTGACTTACAAAAACATCAGTAG 57.523 33.333 0.00 0.00 28.61 2.57
115 116 9.257651 GTAGTGACTTACAAAAACATCAGTAGT 57.742 33.333 0.00 0.00 0.00 2.73
116 117 8.732746 AGTGACTTACAAAAACATCAGTAGTT 57.267 30.769 0.00 0.00 0.00 2.24
117 118 8.827677 AGTGACTTACAAAAACATCAGTAGTTC 58.172 33.333 0.00 0.00 0.00 3.01
118 119 8.609176 GTGACTTACAAAAACATCAGTAGTTCA 58.391 33.333 0.00 0.00 0.00 3.18
119 120 8.826710 TGACTTACAAAAACATCAGTAGTTCAG 58.173 33.333 0.00 0.00 0.00 3.02
120 121 7.639945 ACTTACAAAAACATCAGTAGTTCAGC 58.360 34.615 0.00 0.00 0.00 4.26
121 122 5.095691 ACAAAAACATCAGTAGTTCAGCG 57.904 39.130 0.00 0.00 0.00 5.18
122 123 4.574828 ACAAAAACATCAGTAGTTCAGCGT 59.425 37.500 0.00 0.00 0.00 5.07
123 124 4.732285 AAAACATCAGTAGTTCAGCGTG 57.268 40.909 0.00 0.00 0.00 5.34
124 125 3.386768 AACATCAGTAGTTCAGCGTGT 57.613 42.857 0.00 0.00 0.00 4.49
125 126 2.677199 ACATCAGTAGTTCAGCGTGTG 58.323 47.619 0.00 0.00 0.00 3.82
126 127 2.035961 ACATCAGTAGTTCAGCGTGTGT 59.964 45.455 0.00 0.00 0.00 3.72
127 128 2.134201 TCAGTAGTTCAGCGTGTGTG 57.866 50.000 0.00 0.00 0.00 3.82
128 129 0.508641 CAGTAGTTCAGCGTGTGTGC 59.491 55.000 0.00 0.00 0.00 4.57
130 131 1.611977 AGTAGTTCAGCGTGTGTGCTA 59.388 47.619 0.00 0.00 45.23 3.49
131 132 1.719780 GTAGTTCAGCGTGTGTGCTAC 59.280 52.381 0.00 0.00 45.23 3.58
132 133 0.104120 AGTTCAGCGTGTGTGCTACA 59.896 50.000 0.00 0.00 45.23 2.74
133 134 0.934496 GTTCAGCGTGTGTGCTACAA 59.066 50.000 0.00 0.00 45.23 2.41
134 135 0.934496 TTCAGCGTGTGTGCTACAAC 59.066 50.000 0.00 0.00 45.23 3.32
135 136 0.179097 TCAGCGTGTGTGCTACAACA 60.179 50.000 0.00 0.00 45.23 3.33
136 137 0.233074 CAGCGTGTGTGCTACAACAG 59.767 55.000 0.00 0.00 45.23 3.16
137 138 0.179084 AGCGTGTGTGCTACAACAGT 60.179 50.000 0.00 0.00 45.14 3.55
138 139 0.232303 GCGTGTGTGCTACAACAGTC 59.768 55.000 0.00 0.00 41.89 3.51
139 140 1.566404 CGTGTGTGCTACAACAGTCA 58.434 50.000 0.00 0.00 41.89 3.41
140 141 1.930503 CGTGTGTGCTACAACAGTCAA 59.069 47.619 0.00 0.00 41.89 3.18
141 142 2.350192 CGTGTGTGCTACAACAGTCAAA 59.650 45.455 0.00 0.00 41.89 2.69
142 143 3.680789 GTGTGTGCTACAACAGTCAAAC 58.319 45.455 0.00 0.00 41.89 2.93
143 144 3.374058 GTGTGTGCTACAACAGTCAAACT 59.626 43.478 0.00 0.00 41.89 2.66
144 145 3.373748 TGTGTGCTACAACAGTCAAACTG 59.626 43.478 5.57 5.57 42.33 3.16
145 146 4.861281 TGTGTGCTACAACAGTCAAACTGA 60.861 41.667 13.71 0.00 41.66 3.41
146 147 6.314738 TGTGTGCTACAACAGTCAAACTGAA 61.315 40.000 13.71 0.00 41.66 3.02
147 148 7.733748 TGTGTGCTACAACAGTCAAACTGAAA 61.734 38.462 13.71 0.00 41.66 2.69
148 149 9.122092 TGTGTGCTACAACAGTCAAACTGAAAA 62.122 37.037 13.71 0.00 41.66 2.29
158 159 5.792631 AGTCAAACTGAAAAACTAACGACG 58.207 37.500 0.00 0.00 0.00 5.12
159 160 4.432345 GTCAAACTGAAAAACTAACGACGC 59.568 41.667 0.00 0.00 0.00 5.19
160 161 2.916735 ACTGAAAAACTAACGACGCG 57.083 45.000 3.53 3.53 0.00 6.01
161 162 2.195922 ACTGAAAAACTAACGACGCGT 58.804 42.857 13.85 13.85 43.97 6.01
170 171 3.315796 ACGACGCGTTTGGTTCAG 58.684 55.556 15.53 0.32 36.35 3.02
171 172 2.127758 CGACGCGTTTGGTTCAGC 60.128 61.111 15.53 0.00 0.00 4.26
175 176 3.637714 GCGTTTGGTTCAGCGAGA 58.362 55.556 0.00 0.00 0.00 4.04
176 177 2.162716 GCGTTTGGTTCAGCGAGAT 58.837 52.632 0.00 0.00 0.00 2.75
177 178 0.179215 GCGTTTGGTTCAGCGAGATG 60.179 55.000 0.00 0.00 0.00 2.90
178 179 0.443869 CGTTTGGTTCAGCGAGATGG 59.556 55.000 0.00 0.00 0.00 3.51
179 180 1.523758 GTTTGGTTCAGCGAGATGGT 58.476 50.000 0.00 0.00 0.00 3.55
181 182 0.955428 TTGGTTCAGCGAGATGGTGC 60.955 55.000 0.00 0.00 45.75 5.01
182 183 2.456119 GGTTCAGCGAGATGGTGCG 61.456 63.158 0.00 0.00 45.75 5.34
183 184 2.125552 TTCAGCGAGATGGTGCGG 60.126 61.111 0.00 0.00 45.75 5.69
184 185 2.942796 TTCAGCGAGATGGTGCGGT 61.943 57.895 0.00 0.00 45.75 5.68
185 186 2.434884 CAGCGAGATGGTGCGGTT 60.435 61.111 0.00 0.00 39.57 4.44
186 187 2.034879 CAGCGAGATGGTGCGGTTT 61.035 57.895 0.00 0.00 39.57 3.27
187 188 1.741770 AGCGAGATGGTGCGGTTTC 60.742 57.895 0.00 0.00 34.21 2.78
188 189 1.741770 GCGAGATGGTGCGGTTTCT 60.742 57.895 0.00 0.00 0.00 2.52
189 190 1.970917 GCGAGATGGTGCGGTTTCTG 61.971 60.000 0.00 0.00 0.00 3.02
190 191 0.389817 CGAGATGGTGCGGTTTCTGA 60.390 55.000 0.00 0.00 0.00 3.27
191 192 1.740380 CGAGATGGTGCGGTTTCTGAT 60.740 52.381 0.00 0.00 0.00 2.90
192 193 1.936547 GAGATGGTGCGGTTTCTGATC 59.063 52.381 0.00 0.00 0.00 2.92
193 194 1.017387 GATGGTGCGGTTTCTGATCC 58.983 55.000 0.00 0.00 0.00 3.36
194 195 0.394352 ATGGTGCGGTTTCTGATCCC 60.394 55.000 0.00 0.00 0.00 3.85
195 196 1.749258 GGTGCGGTTTCTGATCCCC 60.749 63.158 0.00 0.00 0.00 4.81
196 197 1.002624 GTGCGGTTTCTGATCCCCA 60.003 57.895 0.00 0.00 0.00 4.96
197 198 1.002624 TGCGGTTTCTGATCCCCAC 60.003 57.895 0.00 0.00 0.00 4.61
198 199 2.106683 GCGGTTTCTGATCCCCACG 61.107 63.158 0.00 0.00 0.00 4.94
199 200 2.106683 CGGTTTCTGATCCCCACGC 61.107 63.158 0.00 0.00 0.00 5.34
200 201 1.299976 GGTTTCTGATCCCCACGCT 59.700 57.895 0.00 0.00 0.00 5.07
201 202 0.322546 GGTTTCTGATCCCCACGCTT 60.323 55.000 0.00 0.00 0.00 4.68
202 203 1.534729 GTTTCTGATCCCCACGCTTT 58.465 50.000 0.00 0.00 0.00 3.51
203 204 1.468914 GTTTCTGATCCCCACGCTTTC 59.531 52.381 0.00 0.00 0.00 2.62
204 205 0.984230 TTCTGATCCCCACGCTTTCT 59.016 50.000 0.00 0.00 0.00 2.52
205 206 0.250234 TCTGATCCCCACGCTTTCTG 59.750 55.000 0.00 0.00 0.00 3.02
206 207 0.250234 CTGATCCCCACGCTTTCTGA 59.750 55.000 0.00 0.00 0.00 3.27
207 208 0.690192 TGATCCCCACGCTTTCTGAA 59.310 50.000 0.00 0.00 0.00 3.02
208 209 1.073125 TGATCCCCACGCTTTCTGAAA 59.927 47.619 2.44 2.44 0.00 2.69
209 210 2.159382 GATCCCCACGCTTTCTGAAAA 58.841 47.619 4.18 0.00 0.00 2.29
210 211 1.314730 TCCCCACGCTTTCTGAAAAC 58.685 50.000 4.18 0.00 0.00 2.43
211 212 0.040425 CCCCACGCTTTCTGAAAACG 60.040 55.000 20.55 20.55 0.00 3.60
212 213 0.040425 CCCACGCTTTCTGAAAACGG 60.040 55.000 24.33 15.29 0.00 4.44
213 214 0.661020 CCACGCTTTCTGAAAACGGT 59.339 50.000 24.33 11.24 0.00 4.83
214 215 1.868498 CCACGCTTTCTGAAAACGGTA 59.132 47.619 24.33 0.00 0.00 4.02
215 216 2.096417 CCACGCTTTCTGAAAACGGTAG 60.096 50.000 24.33 15.53 0.00 3.18
216 217 2.798283 CACGCTTTCTGAAAACGGTAGA 59.202 45.455 24.33 0.00 0.00 2.59
217 218 3.432252 CACGCTTTCTGAAAACGGTAGAT 59.568 43.478 24.33 5.74 0.00 1.98
218 219 4.062991 ACGCTTTCTGAAAACGGTAGATT 58.937 39.130 24.33 5.13 0.00 2.40
219 220 4.084013 ACGCTTTCTGAAAACGGTAGATTG 60.084 41.667 24.33 3.34 0.00 2.67
220 221 4.159120 GCTTTCTGAAAACGGTAGATTGC 58.841 43.478 4.18 0.00 0.00 3.56
221 222 4.394795 CTTTCTGAAAACGGTAGATTGCG 58.605 43.478 4.18 0.00 0.00 4.85
222 223 3.034721 TCTGAAAACGGTAGATTGCGT 57.965 42.857 0.00 0.00 0.00 5.24
223 224 2.734606 TCTGAAAACGGTAGATTGCGTG 59.265 45.455 0.00 0.00 0.00 5.34
224 225 1.195900 TGAAAACGGTAGATTGCGTGC 59.804 47.619 0.00 0.00 0.00 5.34
225 226 1.463444 GAAAACGGTAGATTGCGTGCT 59.537 47.619 0.00 0.00 0.00 4.40
226 227 2.373540 AAACGGTAGATTGCGTGCTA 57.626 45.000 0.00 0.00 0.00 3.49
227 228 1.922570 AACGGTAGATTGCGTGCTAG 58.077 50.000 0.00 0.00 0.00 3.42
228 229 0.102481 ACGGTAGATTGCGTGCTAGG 59.898 55.000 0.00 0.00 0.00 3.02
229 230 0.102481 CGGTAGATTGCGTGCTAGGT 59.898 55.000 0.00 0.00 0.00 3.08
230 231 1.854227 GGTAGATTGCGTGCTAGGTC 58.146 55.000 0.00 0.00 0.00 3.85
231 232 1.409427 GGTAGATTGCGTGCTAGGTCT 59.591 52.381 0.00 0.00 0.00 3.85
232 233 2.159085 GGTAGATTGCGTGCTAGGTCTT 60.159 50.000 0.00 0.00 0.00 3.01
233 234 2.770164 AGATTGCGTGCTAGGTCTTT 57.230 45.000 0.00 0.00 0.00 2.52
234 235 2.350522 AGATTGCGTGCTAGGTCTTTG 58.649 47.619 0.00 0.00 0.00 2.77
235 236 1.398390 GATTGCGTGCTAGGTCTTTGG 59.602 52.381 0.00 0.00 0.00 3.28
236 237 1.234615 TTGCGTGCTAGGTCTTTGGC 61.235 55.000 0.00 0.00 0.00 4.52
237 238 1.671054 GCGTGCTAGGTCTTTGGCA 60.671 57.895 0.00 0.00 0.00 4.92
238 239 1.234615 GCGTGCTAGGTCTTTGGCAA 61.235 55.000 0.00 0.00 36.43 4.52
239 240 0.517316 CGTGCTAGGTCTTTGGCAAC 59.483 55.000 0.00 0.00 36.43 4.17
254 255 3.197434 GGCAACAACGGTTTCTGATAC 57.803 47.619 0.00 0.00 34.21 2.24
255 256 2.412325 GGCAACAACGGTTTCTGATACG 60.412 50.000 0.00 0.00 34.21 3.06
256 257 2.834689 CAACAACGGTTTCTGATACGC 58.165 47.619 0.00 0.00 34.21 4.42
257 258 1.065358 ACAACGGTTTCTGATACGCG 58.935 50.000 3.53 3.53 0.00 6.01
258 259 0.368907 CAACGGTTTCTGATACGCGG 59.631 55.000 12.47 0.00 0.00 6.46
259 260 1.356527 AACGGTTTCTGATACGCGGC 61.357 55.000 12.47 0.00 0.00 6.53
260 261 1.518572 CGGTTTCTGATACGCGGCT 60.519 57.895 12.47 0.00 0.00 5.52
261 262 1.082117 CGGTTTCTGATACGCGGCTT 61.082 55.000 12.47 0.00 0.00 4.35
262 263 0.651031 GGTTTCTGATACGCGGCTTC 59.349 55.000 12.47 4.52 0.00 3.86
263 264 0.297820 GTTTCTGATACGCGGCTTCG 59.702 55.000 12.47 0.00 0.00 3.79
273 274 3.339731 CGGCTTCGCAAAGTCCAA 58.660 55.556 0.00 0.00 33.33 3.53
274 275 1.652012 CGGCTTCGCAAAGTCCAAA 59.348 52.632 0.00 0.00 33.33 3.28
275 276 0.660300 CGGCTTCGCAAAGTCCAAAC 60.660 55.000 0.00 0.00 33.33 2.93
276 277 0.668535 GGCTTCGCAAAGTCCAAACT 59.331 50.000 0.00 0.00 37.32 2.66
277 278 1.877443 GGCTTCGCAAAGTCCAAACTA 59.123 47.619 0.00 0.00 33.48 2.24
278 279 2.095718 GGCTTCGCAAAGTCCAAACTAG 60.096 50.000 0.00 0.00 33.48 2.57
279 280 2.665794 GCTTCGCAAAGTCCAAACTAGC 60.666 50.000 0.00 0.00 33.48 3.42
280 281 1.519408 TCGCAAAGTCCAAACTAGCC 58.481 50.000 0.00 0.00 34.74 3.93
281 282 0.165944 CGCAAAGTCCAAACTAGCCG 59.834 55.000 0.00 0.00 34.74 5.52
282 283 1.519408 GCAAAGTCCAAACTAGCCGA 58.481 50.000 0.00 0.00 33.48 5.54
283 284 1.464997 GCAAAGTCCAAACTAGCCGAG 59.535 52.381 0.00 0.00 33.48 4.63
284 285 1.464997 CAAAGTCCAAACTAGCCGAGC 59.535 52.381 0.00 0.00 33.48 5.03
285 286 0.389948 AAGTCCAAACTAGCCGAGCG 60.390 55.000 0.00 0.00 33.48 5.03
286 287 1.214589 GTCCAAACTAGCCGAGCGA 59.785 57.895 0.00 0.00 0.00 4.93
287 288 0.389426 GTCCAAACTAGCCGAGCGAA 60.389 55.000 0.00 0.00 0.00 4.70
288 289 0.108804 TCCAAACTAGCCGAGCGAAG 60.109 55.000 0.00 0.00 0.00 3.79
289 290 1.084370 CCAAACTAGCCGAGCGAAGG 61.084 60.000 0.00 0.00 0.00 3.46
290 291 0.108804 CAAACTAGCCGAGCGAAGGA 60.109 55.000 0.00 0.00 0.00 3.36
291 292 0.824759 AAACTAGCCGAGCGAAGGAT 59.175 50.000 0.00 0.00 0.00 3.24
292 293 0.103208 AACTAGCCGAGCGAAGGATG 59.897 55.000 0.00 0.00 0.00 3.51
293 294 0.752009 ACTAGCCGAGCGAAGGATGA 60.752 55.000 0.00 0.00 0.00 2.92
294 295 0.600557 CTAGCCGAGCGAAGGATGAT 59.399 55.000 0.00 0.00 0.00 2.45
295 296 1.000283 CTAGCCGAGCGAAGGATGATT 60.000 52.381 0.00 0.00 0.00 2.57
296 297 1.040646 AGCCGAGCGAAGGATGATTA 58.959 50.000 0.00 0.00 0.00 1.75
297 298 1.000283 AGCCGAGCGAAGGATGATTAG 60.000 52.381 0.00 0.00 0.00 1.73
298 299 1.423395 CCGAGCGAAGGATGATTAGC 58.577 55.000 0.00 0.00 0.00 3.09
299 300 1.269778 CCGAGCGAAGGATGATTAGCA 60.270 52.381 0.00 0.00 33.74 3.49
300 301 2.473816 CGAGCGAAGGATGATTAGCAA 58.526 47.619 0.00 0.00 33.74 3.91
301 302 2.866156 CGAGCGAAGGATGATTAGCAAA 59.134 45.455 0.00 0.00 33.74 3.68
302 303 3.302740 CGAGCGAAGGATGATTAGCAAAC 60.303 47.826 0.00 0.00 33.74 2.93
303 304 2.945668 AGCGAAGGATGATTAGCAAACC 59.054 45.455 0.00 0.00 33.74 3.27
304 305 2.286418 GCGAAGGATGATTAGCAAACCG 60.286 50.000 0.00 0.00 33.95 4.44
305 306 2.287915 CGAAGGATGATTAGCAAACCGG 59.712 50.000 0.00 0.00 33.95 5.28
306 307 2.348411 AGGATGATTAGCAAACCGGG 57.652 50.000 6.32 0.00 33.95 5.73
307 308 0.668535 GGATGATTAGCAAACCGGGC 59.331 55.000 6.32 0.00 0.00 6.13
308 309 0.307760 GATGATTAGCAAACCGGGCG 59.692 55.000 6.32 0.00 36.08 6.13
309 310 0.107410 ATGATTAGCAAACCGGGCGA 60.107 50.000 6.32 0.00 36.08 5.54
310 311 0.321741 TGATTAGCAAACCGGGCGAA 60.322 50.000 6.32 2.35 36.08 4.70
311 312 0.806241 GATTAGCAAACCGGGCGAAA 59.194 50.000 6.32 0.33 36.08 3.46
312 313 0.524414 ATTAGCAAACCGGGCGAAAC 59.476 50.000 6.32 0.00 36.08 2.78
313 314 1.517210 TTAGCAAACCGGGCGAAACC 61.517 55.000 6.32 0.00 36.08 3.27
321 322 3.569902 GGGCGAAACCGAACGAAT 58.430 55.556 0.00 0.00 40.62 3.34
322 323 1.422662 GGGCGAAACCGAACGAATC 59.577 57.895 0.00 0.00 40.62 2.52
323 324 1.293267 GGGCGAAACCGAACGAATCA 61.293 55.000 0.00 0.00 40.62 2.57
324 325 0.513820 GGCGAAACCGAACGAATCAA 59.486 50.000 0.00 0.00 0.00 2.57
325 326 1.069771 GGCGAAACCGAACGAATCAAA 60.070 47.619 0.00 0.00 0.00 2.69
326 327 1.967235 GCGAAACCGAACGAATCAAAC 59.033 47.619 0.00 0.00 0.00 2.93
327 328 2.600320 GCGAAACCGAACGAATCAAACA 60.600 45.455 0.00 0.00 0.00 2.83
328 329 3.609475 CGAAACCGAACGAATCAAACAA 58.391 40.909 0.00 0.00 0.00 2.83
329 330 4.029704 CGAAACCGAACGAATCAAACAAA 58.970 39.130 0.00 0.00 0.00 2.83
330 331 4.144051 CGAAACCGAACGAATCAAACAAAG 59.856 41.667 0.00 0.00 0.00 2.77
331 332 2.994849 ACCGAACGAATCAAACAAAGC 58.005 42.857 0.00 0.00 0.00 3.51
332 333 2.287368 ACCGAACGAATCAAACAAAGCC 60.287 45.455 0.00 0.00 0.00 4.35
333 334 2.287308 CCGAACGAATCAAACAAAGCCA 60.287 45.455 0.00 0.00 0.00 4.75
334 335 2.973224 CGAACGAATCAAACAAAGCCAG 59.027 45.455 0.00 0.00 0.00 4.85
335 336 3.548014 CGAACGAATCAAACAAAGCCAGT 60.548 43.478 0.00 0.00 0.00 4.00
336 337 4.319190 CGAACGAATCAAACAAAGCCAGTA 60.319 41.667 0.00 0.00 0.00 2.74
337 338 5.616866 CGAACGAATCAAACAAAGCCAGTAT 60.617 40.000 0.00 0.00 0.00 2.12
338 339 5.296813 ACGAATCAAACAAAGCCAGTATC 57.703 39.130 0.00 0.00 0.00 2.24
339 340 4.156008 ACGAATCAAACAAAGCCAGTATCC 59.844 41.667 0.00 0.00 0.00 2.59
340 341 4.662145 GAATCAAACAAAGCCAGTATCCG 58.338 43.478 0.00 0.00 0.00 4.18
341 342 3.134574 TCAAACAAAGCCAGTATCCGT 57.865 42.857 0.00 0.00 0.00 4.69
342 343 4.274602 TCAAACAAAGCCAGTATCCGTA 57.725 40.909 0.00 0.00 0.00 4.02
343 344 4.643463 TCAAACAAAGCCAGTATCCGTAA 58.357 39.130 0.00 0.00 0.00 3.18
344 345 5.064558 TCAAACAAAGCCAGTATCCGTAAA 58.935 37.500 0.00 0.00 0.00 2.01
345 346 5.531659 TCAAACAAAGCCAGTATCCGTAAAA 59.468 36.000 0.00 0.00 0.00 1.52
346 347 6.039493 TCAAACAAAGCCAGTATCCGTAAAAA 59.961 34.615 0.00 0.00 0.00 1.94
362 363 2.619013 AAAAAGAATCGGAAGCAGCG 57.381 45.000 0.00 0.00 0.00 5.18
363 364 0.169009 AAAAGAATCGGAAGCAGCGC 59.831 50.000 0.00 0.00 0.00 5.92
364 365 0.674895 AAAGAATCGGAAGCAGCGCT 60.675 50.000 2.64 2.64 42.56 5.92
372 373 2.998097 AAGCAGCGCTTCCCCATA 59.002 55.556 7.50 0.00 46.77 2.74
373 374 1.452108 AAGCAGCGCTTCCCCATAC 60.452 57.895 7.50 0.00 46.77 2.39
374 375 2.893682 AAGCAGCGCTTCCCCATACC 62.894 60.000 7.50 0.00 46.77 2.73
375 376 2.588877 CAGCGCTTCCCCATACCG 60.589 66.667 7.50 0.00 0.00 4.02
376 377 2.762459 AGCGCTTCCCCATACCGA 60.762 61.111 2.64 0.00 0.00 4.69
377 378 2.188469 GCGCTTCCCCATACCGAA 59.812 61.111 0.00 0.00 0.00 4.30
378 379 1.450669 GCGCTTCCCCATACCGAAA 60.451 57.895 0.00 0.00 0.00 3.46
379 380 1.712018 GCGCTTCCCCATACCGAAAC 61.712 60.000 0.00 0.00 0.00 2.78
380 381 1.093496 CGCTTCCCCATACCGAAACC 61.093 60.000 0.00 0.00 0.00 3.27
381 382 1.093496 GCTTCCCCATACCGAAACCG 61.093 60.000 0.00 0.00 0.00 4.44
382 383 0.538118 CTTCCCCATACCGAAACCGA 59.462 55.000 0.00 0.00 0.00 4.69
383 384 1.140252 CTTCCCCATACCGAAACCGAT 59.860 52.381 0.00 0.00 0.00 4.18
384 385 1.205966 TCCCCATACCGAAACCGATT 58.794 50.000 0.00 0.00 0.00 3.34
385 386 2.396608 TCCCCATACCGAAACCGATTA 58.603 47.619 0.00 0.00 0.00 1.75
386 387 2.102925 TCCCCATACCGAAACCGATTAC 59.897 50.000 0.00 0.00 0.00 1.89
387 388 2.129607 CCCATACCGAAACCGATTACG 58.870 52.381 0.00 0.00 39.43 3.18
388 389 2.481795 CCCATACCGAAACCGATTACGT 60.482 50.000 0.00 0.00 37.88 3.57
389 390 3.189285 CCATACCGAAACCGATTACGTT 58.811 45.455 0.00 0.00 37.88 3.99
390 391 4.358851 CCATACCGAAACCGATTACGTTA 58.641 43.478 0.00 0.00 37.88 3.18
391 392 4.207019 CCATACCGAAACCGATTACGTTAC 59.793 45.833 0.00 0.00 37.88 2.50
392 393 2.606108 ACCGAAACCGATTACGTTACC 58.394 47.619 0.00 0.00 37.88 2.85
393 394 2.231235 ACCGAAACCGATTACGTTACCT 59.769 45.455 0.00 0.00 37.88 3.08
394 395 2.599973 CCGAAACCGATTACGTTACCTG 59.400 50.000 0.00 0.00 37.88 4.00
395 396 3.500982 CGAAACCGATTACGTTACCTGA 58.499 45.455 0.00 0.00 37.88 3.86
396 397 3.545078 CGAAACCGATTACGTTACCTGAG 59.455 47.826 0.00 0.00 37.88 3.35
397 398 2.573941 ACCGATTACGTTACCTGAGC 57.426 50.000 0.00 0.00 37.88 4.26
398 399 1.820519 ACCGATTACGTTACCTGAGCA 59.179 47.619 0.00 0.00 37.88 4.26
399 400 2.159282 ACCGATTACGTTACCTGAGCAG 60.159 50.000 0.00 0.00 37.88 4.24
400 401 1.852895 CGATTACGTTACCTGAGCAGC 59.147 52.381 0.00 0.00 34.56 5.25
401 402 2.734175 CGATTACGTTACCTGAGCAGCA 60.734 50.000 0.00 0.00 34.56 4.41
402 403 2.823924 TTACGTTACCTGAGCAGCAA 57.176 45.000 0.00 0.00 0.00 3.91
403 404 2.074547 TACGTTACCTGAGCAGCAAC 57.925 50.000 0.00 0.00 0.00 4.17
404 405 0.602905 ACGTTACCTGAGCAGCAACC 60.603 55.000 0.00 0.00 0.00 3.77
405 406 0.602638 CGTTACCTGAGCAGCAACCA 60.603 55.000 0.00 0.00 0.00 3.67
406 407 1.604604 GTTACCTGAGCAGCAACCAA 58.395 50.000 0.00 0.00 0.00 3.67
407 408 1.953686 GTTACCTGAGCAGCAACCAAA 59.046 47.619 0.00 0.00 0.00 3.28
408 409 1.604604 TACCTGAGCAGCAACCAAAC 58.395 50.000 0.00 0.00 0.00 2.93
409 410 1.283793 CCTGAGCAGCAACCAAACG 59.716 57.895 0.00 0.00 0.00 3.60
410 411 1.370900 CTGAGCAGCAACCAAACGC 60.371 57.895 0.00 0.00 0.00 4.84
411 412 2.427410 GAGCAGCAACCAAACGCG 60.427 61.111 3.53 3.53 0.00 6.01
412 413 3.181169 GAGCAGCAACCAAACGCGT 62.181 57.895 5.58 5.58 0.00 6.01
413 414 2.725815 GCAGCAACCAAACGCGTC 60.726 61.111 14.44 0.00 0.00 5.19
414 415 2.425124 CAGCAACCAAACGCGTCG 60.425 61.111 14.44 6.98 0.00 5.12
415 416 2.893404 AGCAACCAAACGCGTCGT 60.893 55.556 14.44 6.47 43.97 4.34
416 417 1.592131 AGCAACCAAACGCGTCGTA 60.592 52.632 14.44 0.00 39.99 3.43
417 418 1.152989 AGCAACCAAACGCGTCGTAA 61.153 50.000 14.44 0.00 39.99 3.18
418 419 0.316032 GCAACCAAACGCGTCGTAAA 60.316 50.000 14.44 0.00 39.99 2.01
419 420 1.660896 GCAACCAAACGCGTCGTAAAT 60.661 47.619 14.44 0.00 39.99 1.40
420 421 2.641912 CAACCAAACGCGTCGTAAATT 58.358 42.857 14.44 0.00 39.99 1.82
421 422 2.582446 ACCAAACGCGTCGTAAATTC 57.418 45.000 14.44 0.00 39.99 2.17
422 423 2.137523 ACCAAACGCGTCGTAAATTCT 58.862 42.857 14.44 0.00 39.99 2.40
423 424 2.545106 ACCAAACGCGTCGTAAATTCTT 59.455 40.909 14.44 0.00 39.99 2.52
424 425 3.002553 ACCAAACGCGTCGTAAATTCTTT 59.997 39.130 14.44 0.00 39.99 2.52
425 426 3.969981 CCAAACGCGTCGTAAATTCTTTT 59.030 39.130 14.44 0.00 39.99 2.27
426 427 4.086105 CCAAACGCGTCGTAAATTCTTTTC 59.914 41.667 14.44 0.00 39.99 2.29
427 428 4.720530 AACGCGTCGTAAATTCTTTTCT 57.279 36.364 14.44 0.00 39.99 2.52
428 429 5.827568 AACGCGTCGTAAATTCTTTTCTA 57.172 34.783 14.44 0.00 39.99 2.10
429 430 5.827568 ACGCGTCGTAAATTCTTTTCTAA 57.172 34.783 5.58 0.00 38.73 2.10
430 431 6.214205 ACGCGTCGTAAATTCTTTTCTAAA 57.786 33.333 5.58 0.00 38.73 1.85
431 432 6.648502 ACGCGTCGTAAATTCTTTTCTAAAA 58.351 32.000 5.58 0.00 38.73 1.52
432 433 7.293018 ACGCGTCGTAAATTCTTTTCTAAAAT 58.707 30.769 5.58 0.00 38.73 1.82
433 434 7.267600 ACGCGTCGTAAATTCTTTTCTAAAATG 59.732 33.333 5.58 0.00 38.73 2.32
434 435 7.252865 CGCGTCGTAAATTCTTTTCTAAAATGG 60.253 37.037 0.00 0.00 0.00 3.16
435 436 7.536281 GCGTCGTAAATTCTTTTCTAAAATGGT 59.464 33.333 0.00 0.00 0.00 3.55
436 437 9.047871 CGTCGTAAATTCTTTTCTAAAATGGTC 57.952 33.333 0.00 0.00 0.00 4.02
437 438 9.887406 GTCGTAAATTCTTTTCTAAAATGGTCA 57.113 29.630 0.00 0.00 0.00 4.02
491 492 9.981114 AATTAGCACATAAATAATTTACAGGGC 57.019 29.630 0.00 0.00 34.77 5.19
492 493 8.760980 TTAGCACATAAATAATTTACAGGGCT 57.239 30.769 0.00 0.00 42.38 5.19
493 494 7.660030 AGCACATAAATAATTTACAGGGCTT 57.340 32.000 0.00 0.00 39.02 4.35
494 495 7.716612 AGCACATAAATAATTTACAGGGCTTC 58.283 34.615 0.00 0.00 39.02 3.86
495 496 7.341769 AGCACATAAATAATTTACAGGGCTTCA 59.658 33.333 0.00 0.00 39.02 3.02
496 497 7.649306 GCACATAAATAATTTACAGGGCTTCAG 59.351 37.037 0.00 0.00 32.96 3.02
497 498 8.137437 CACATAAATAATTTACAGGGCTTCAGG 58.863 37.037 0.00 0.00 0.00 3.86
498 499 7.287696 ACATAAATAATTTACAGGGCTTCAGGG 59.712 37.037 0.00 0.00 0.00 4.45
499 500 1.852633 AATTTACAGGGCTTCAGGGC 58.147 50.000 0.00 0.00 40.05 5.19
500 501 0.704076 ATTTACAGGGCTTCAGGGCA 59.296 50.000 0.00 0.00 42.84 5.36
501 502 0.704076 TTTACAGGGCTTCAGGGCAT 59.296 50.000 0.00 0.00 42.84 4.40
502 503 0.704076 TTACAGGGCTTCAGGGCATT 59.296 50.000 0.00 0.00 42.84 3.56
503 504 0.704076 TACAGGGCTTCAGGGCATTT 59.296 50.000 0.00 0.00 42.84 2.32
506 507 0.704076 AGGGCTTCAGGGCATTTACA 59.296 50.000 0.00 0.00 42.84 2.41
507 508 1.106285 GGGCTTCAGGGCATTTACAG 58.894 55.000 0.00 0.00 42.84 2.74
517 518 7.514784 TCAGGGCATTTACAGATAATTCATG 57.485 36.000 0.00 0.00 0.00 3.07
518 519 7.062322 TCAGGGCATTTACAGATAATTCATGT 58.938 34.615 0.00 0.00 0.00 3.21
519 520 8.217111 TCAGGGCATTTACAGATAATTCATGTA 58.783 33.333 0.00 0.00 0.00 2.29
520 521 8.292448 CAGGGCATTTACAGATAATTCATGTAC 58.708 37.037 0.00 0.00 0.00 2.90
560 564 3.678072 TCGTTTCTAGCAATCACCGAAAG 59.322 43.478 0.00 0.00 0.00 2.62
567 571 3.330267 AGCAATCACCGAAAGTCTTCTC 58.670 45.455 0.00 0.00 0.00 2.87
573 577 4.621991 TCACCGAAAGTCTTCTCTTCTTG 58.378 43.478 0.00 0.00 0.00 3.02
627 631 1.028905 TTTGGGCTGAGGTTTTCGTG 58.971 50.000 0.00 0.00 0.00 4.35
667 702 2.580661 CAAAATATTGCCGCGCCTG 58.419 52.632 0.00 0.00 0.00 4.85
670 705 2.340453 AAATATTGCCGCGCCTGCTG 62.340 55.000 16.40 0.00 39.65 4.41
671 706 3.755526 ATATTGCCGCGCCTGCTGA 62.756 57.895 16.40 6.85 39.65 4.26
718 753 2.437895 ACGATCCGGCTGACTCGA 60.438 61.111 19.39 0.00 35.24 4.04
771 806 2.356780 ACGGATCACTCCCCCGAAC 61.357 63.158 7.06 0.00 45.58 3.95
780 815 3.861797 CCCCCGAACCCAGATCCG 61.862 72.222 0.00 0.00 0.00 4.18
811 847 2.507102 CGACGCATCCAACGCTCT 60.507 61.111 0.00 0.00 0.00 4.09
813 849 1.202973 CGACGCATCCAACGCTCTAG 61.203 60.000 0.00 0.00 0.00 2.43
1380 1448 1.000396 GCCCAAGGACATCCAGCTT 60.000 57.895 0.00 0.00 38.89 3.74
1488 1578 3.242413 GGAAATGTATGCGTGCTAGTGTG 60.242 47.826 0.00 0.00 0.00 3.82
1534 1624 2.094545 TGTGTCTGATCTGATGTCACCG 60.095 50.000 14.94 0.00 0.00 4.94
1588 1680 3.616956 TGCATTCTGTTCTCGGATCTT 57.383 42.857 0.00 0.00 0.00 2.40
1594 1686 2.093973 TCTGTTCTCGGATCTTTGCCTC 60.094 50.000 0.00 0.00 0.00 4.70
1626 1736 3.733988 GCCTGTCATTGAATGTGATGCAG 60.734 47.826 4.93 7.11 32.35 4.41
1635 1745 1.909700 ATGTGATGCAGGAAACGGTT 58.090 45.000 0.00 0.00 0.00 4.44
1639 1749 2.083774 TGATGCAGGAAACGGTTGATC 58.916 47.619 0.00 0.00 0.00 2.92
1689 1800 4.072839 GCTGGTTTTAGCTACTTTGTCCT 58.927 43.478 0.00 0.00 40.52 3.85
1690 1801 5.221762 TGCTGGTTTTAGCTACTTTGTCCTA 60.222 40.000 0.00 0.00 44.01 2.94
1691 1802 5.704053 GCTGGTTTTAGCTACTTTGTCCTAA 59.296 40.000 0.00 0.00 40.52 2.69
1692 1803 6.206048 GCTGGTTTTAGCTACTTTGTCCTAAA 59.794 38.462 0.00 0.00 40.52 1.85
1718 1834 6.849588 AATTGCTTCAAGTTTTTAGCTTGG 57.150 33.333 0.00 0.00 42.44 3.61
1753 1870 6.261381 TGGCTGTATTAAATTCCGTAATCACC 59.739 38.462 0.00 0.00 0.00 4.02
1775 1892 4.701651 CCAGTAATCTTGTTGATTGCCTCA 59.298 41.667 0.00 0.00 45.10 3.86
1785 1902 3.063510 TGATTGCCTCAGAACCTGAAG 57.936 47.619 0.00 0.00 40.18 3.02
1793 1910 2.038295 CTCAGAACCTGAAGGAACAGCT 59.962 50.000 2.62 0.00 40.18 4.24
1800 1917 3.339407 CCTGAAGGAACAGCTTTGGCTT 61.339 50.000 0.00 0.00 41.92 4.35
1826 1951 2.072298 GTTCTGTGTGTCCATCTGCTC 58.928 52.381 0.00 0.00 0.00 4.26
1837 1970 5.874810 GTGTCCATCTGCTCTATGTTGTTTA 59.125 40.000 0.00 0.00 0.00 2.01
1838 1971 6.540189 GTGTCCATCTGCTCTATGTTGTTTAT 59.460 38.462 0.00 0.00 0.00 1.40
1839 1972 7.066284 GTGTCCATCTGCTCTATGTTGTTTATT 59.934 37.037 0.00 0.00 0.00 1.40
1842 1975 6.694411 CCATCTGCTCTATGTTGTTTATTTGC 59.306 38.462 0.00 0.00 0.00 3.68
1843 1976 6.194796 TCTGCTCTATGTTGTTTATTTGCC 57.805 37.500 0.00 0.00 0.00 4.52
1871 2008 6.152638 TCCTGTAATTCCTTTTGATCCCTT 57.847 37.500 0.00 0.00 0.00 3.95
1913 2052 1.135199 ACCTGTACCACGATGCTAACG 60.135 52.381 0.00 0.00 0.00 3.18
1961 2106 4.963276 TTTATTGTGCACTGCTCATACC 57.037 40.909 19.41 0.00 32.16 2.73
1982 2127 5.156355 ACCGTACATACTGTCTTTAACACG 58.844 41.667 0.00 0.00 33.24 4.49
1996 2141 9.478768 TGTCTTTAACACGACTGTATCAAATTA 57.521 29.630 0.00 0.00 31.20 1.40
1998 2143 9.701098 TCTTTAACACGACTGTATCAAATTAGT 57.299 29.630 0.00 0.00 0.00 2.24
2001 2146 9.911138 TTAACACGACTGTATCAAATTAGTACA 57.089 29.630 0.00 0.00 0.00 2.90
2002 2147 8.821147 AACACGACTGTATCAAATTAGTACAA 57.179 30.769 0.00 0.00 0.00 2.41
2181 2341 7.750229 TTAATGCTGAAATGATACATCTCCC 57.250 36.000 0.00 0.00 0.00 4.30
2187 2347 4.101585 TGAAATGATACATCTCCCGCTCTT 59.898 41.667 0.00 0.00 0.00 2.85
2188 2348 4.696479 AATGATACATCTCCCGCTCTTT 57.304 40.909 0.00 0.00 0.00 2.52
2229 2573 9.931210 GGCATCTAGTTTATTGTTTACATGTAC 57.069 33.333 4.68 0.00 0.00 2.90
2230 2574 9.931210 GCATCTAGTTTATTGTTTACATGTACC 57.069 33.333 4.68 0.00 0.00 3.34
2286 2630 8.934697 AGTACTTTAGGGATATCAAATGCTACA 58.065 33.333 4.83 0.00 0.00 2.74
2387 2732 7.060421 ACAAAAAGAAGATGAACCAGTCCTAA 58.940 34.615 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.667969 GCAACGGAAGCCATGAAAAATC 59.332 45.455 0.00 0.00 0.00 2.17
1 2 2.299867 AGCAACGGAAGCCATGAAAAAT 59.700 40.909 0.00 0.00 0.00 1.82
2 3 1.686052 AGCAACGGAAGCCATGAAAAA 59.314 42.857 0.00 0.00 0.00 1.94
3 4 1.000385 CAGCAACGGAAGCCATGAAAA 60.000 47.619 0.00 0.00 0.00 2.29
4 5 0.597568 CAGCAACGGAAGCCATGAAA 59.402 50.000 0.00 0.00 0.00 2.69
6 7 0.955428 GTCAGCAACGGAAGCCATGA 60.955 55.000 0.00 0.00 0.00 3.07
7 8 1.236616 TGTCAGCAACGGAAGCCATG 61.237 55.000 0.00 0.00 0.00 3.66
8 9 0.537143 TTGTCAGCAACGGAAGCCAT 60.537 50.000 0.00 0.00 0.00 4.40
9 10 1.153066 TTGTCAGCAACGGAAGCCA 60.153 52.632 0.00 0.00 0.00 4.75
10 11 1.576421 CTTGTCAGCAACGGAAGCC 59.424 57.895 0.00 0.00 0.00 4.35
11 12 1.081840 GCTTGTCAGCAACGGAAGC 60.082 57.895 0.00 0.00 46.49 3.86
20 21 1.666888 CCATTTCGTTGGCTTGTCAGC 60.667 52.381 0.00 0.00 46.52 4.26
21 22 1.879380 TCCATTTCGTTGGCTTGTCAG 59.121 47.619 0.00 0.00 36.66 3.51
22 23 1.606668 GTCCATTTCGTTGGCTTGTCA 59.393 47.619 0.00 0.00 36.66 3.58
23 24 1.606668 TGTCCATTTCGTTGGCTTGTC 59.393 47.619 0.00 0.00 36.66 3.18
24 25 1.608590 CTGTCCATTTCGTTGGCTTGT 59.391 47.619 0.00 0.00 36.66 3.16
25 26 1.879380 TCTGTCCATTTCGTTGGCTTG 59.121 47.619 0.00 0.00 36.66 4.01
26 27 2.270352 TCTGTCCATTTCGTTGGCTT 57.730 45.000 0.00 0.00 36.66 4.35
27 28 2.496899 ATCTGTCCATTTCGTTGGCT 57.503 45.000 0.00 0.00 36.66 4.75
28 29 2.159379 GGAATCTGTCCATTTCGTTGGC 60.159 50.000 0.00 0.00 46.97 4.52
29 30 3.764885 GGAATCTGTCCATTTCGTTGG 57.235 47.619 0.00 0.00 46.97 3.77
40 41 0.389948 AGCACGTTCGGGAATCTGTC 60.390 55.000 0.00 0.00 0.00 3.51
41 42 0.034896 AAGCACGTTCGGGAATCTGT 59.965 50.000 0.00 0.00 0.00 3.41
42 43 0.443869 CAAGCACGTTCGGGAATCTG 59.556 55.000 0.00 0.00 0.00 2.90
43 44 1.298859 GCAAGCACGTTCGGGAATCT 61.299 55.000 0.00 0.00 0.00 2.40
44 45 1.134694 GCAAGCACGTTCGGGAATC 59.865 57.895 0.00 0.00 0.00 2.52
45 46 2.332654 GGCAAGCACGTTCGGGAAT 61.333 57.895 0.00 0.00 0.00 3.01
46 47 2.975799 GGCAAGCACGTTCGGGAA 60.976 61.111 0.00 0.00 0.00 3.97
47 48 4.243008 TGGCAAGCACGTTCGGGA 62.243 61.111 0.00 0.00 0.00 5.14
48 49 4.025401 GTGGCAAGCACGTTCGGG 62.025 66.667 0.00 0.00 0.00 5.14
49 50 4.368808 CGTGGCAAGCACGTTCGG 62.369 66.667 5.90 0.00 40.71 4.30
50 51 2.170260 ATTCGTGGCAAGCACGTTCG 62.170 55.000 12.63 0.00 45.21 3.95
51 52 0.452784 GATTCGTGGCAAGCACGTTC 60.453 55.000 12.63 8.29 45.21 3.95
52 53 1.574428 GATTCGTGGCAAGCACGTT 59.426 52.632 12.63 3.63 45.21 3.99
53 54 2.325082 GGATTCGTGGCAAGCACGT 61.325 57.895 12.63 0.00 45.21 4.49
54 55 1.647545 ATGGATTCGTGGCAAGCACG 61.648 55.000 7.56 7.56 46.21 5.34
55 56 0.099436 GATGGATTCGTGGCAAGCAC 59.901 55.000 0.00 0.00 0.00 4.40
56 57 1.368345 CGATGGATTCGTGGCAAGCA 61.368 55.000 0.00 0.00 43.01 3.91
57 58 1.353103 CGATGGATTCGTGGCAAGC 59.647 57.895 0.00 0.00 43.01 4.01
66 67 7.235430 ACTTCGAGTTATTTTCGATGGATTC 57.765 36.000 12.85 0.00 45.38 2.52
67 68 7.980099 ACTACTTCGAGTTATTTTCGATGGATT 59.020 33.333 12.85 0.00 45.38 3.01
68 69 7.435488 CACTACTTCGAGTTATTTTCGATGGAT 59.565 37.037 12.85 0.00 45.38 3.41
69 70 6.750501 CACTACTTCGAGTTATTTTCGATGGA 59.249 38.462 12.85 5.68 45.38 3.41
70 71 6.750501 TCACTACTTCGAGTTATTTTCGATGG 59.249 38.462 12.85 6.21 45.38 3.51
71 72 7.485277 AGTCACTACTTCGAGTTATTTTCGATG 59.515 37.037 8.40 8.40 45.38 3.84
72 73 7.536855 AGTCACTACTTCGAGTTATTTTCGAT 58.463 34.615 0.00 0.00 45.38 3.59
73 74 6.906659 AGTCACTACTTCGAGTTATTTTCGA 58.093 36.000 0.00 0.00 44.52 3.71
74 75 7.564044 AAGTCACTACTTCGAGTTATTTTCG 57.436 36.000 0.00 0.00 42.42 3.46
75 76 9.403110 TGTAAGTCACTACTTCGAGTTATTTTC 57.597 33.333 0.00 0.00 42.42 2.29
76 77 9.754382 TTGTAAGTCACTACTTCGAGTTATTTT 57.246 29.630 0.00 0.00 42.42 1.82
77 78 9.754382 TTTGTAAGTCACTACTTCGAGTTATTT 57.246 29.630 0.00 0.00 42.42 1.40
78 79 9.754382 TTTTGTAAGTCACTACTTCGAGTTATT 57.246 29.630 0.00 0.00 42.42 1.40
79 80 9.754382 TTTTTGTAAGTCACTACTTCGAGTTAT 57.246 29.630 0.00 0.00 42.42 1.89
80 81 9.023967 GTTTTTGTAAGTCACTACTTCGAGTTA 57.976 33.333 0.00 0.00 42.42 2.24
81 82 7.546667 TGTTTTTGTAAGTCACTACTTCGAGTT 59.453 33.333 0.00 0.00 42.42 3.01
82 83 7.037438 TGTTTTTGTAAGTCACTACTTCGAGT 58.963 34.615 0.00 0.00 42.42 4.18
83 84 7.459394 TGTTTTTGTAAGTCACTACTTCGAG 57.541 36.000 0.00 0.00 42.42 4.04
84 85 7.707464 TGATGTTTTTGTAAGTCACTACTTCGA 59.293 33.333 0.00 0.00 42.42 3.71
85 86 7.847487 TGATGTTTTTGTAAGTCACTACTTCG 58.153 34.615 0.00 0.00 42.42 3.79
86 87 8.827677 ACTGATGTTTTTGTAAGTCACTACTTC 58.172 33.333 0.00 0.00 42.42 3.01
88 89 9.477484 CTACTGATGTTTTTGTAAGTCACTACT 57.523 33.333 0.00 0.00 37.65 2.57
89 90 9.257651 ACTACTGATGTTTTTGTAAGTCACTAC 57.742 33.333 0.00 0.00 0.00 2.73
90 91 9.826574 AACTACTGATGTTTTTGTAAGTCACTA 57.173 29.630 0.00 0.00 0.00 2.74
91 92 8.732746 AACTACTGATGTTTTTGTAAGTCACT 57.267 30.769 0.00 0.00 0.00 3.41
92 93 8.609176 TGAACTACTGATGTTTTTGTAAGTCAC 58.391 33.333 0.00 0.00 0.00 3.67
93 94 8.725405 TGAACTACTGATGTTTTTGTAAGTCA 57.275 30.769 0.00 0.00 0.00 3.41
94 95 7.798982 GCTGAACTACTGATGTTTTTGTAAGTC 59.201 37.037 0.00 0.00 0.00 3.01
95 96 7.518370 CGCTGAACTACTGATGTTTTTGTAAGT 60.518 37.037 0.00 0.00 0.00 2.24
96 97 6.792250 CGCTGAACTACTGATGTTTTTGTAAG 59.208 38.462 0.00 0.00 0.00 2.34
97 98 6.259167 ACGCTGAACTACTGATGTTTTTGTAA 59.741 34.615 0.00 0.00 0.00 2.41
98 99 5.756347 ACGCTGAACTACTGATGTTTTTGTA 59.244 36.000 0.00 0.00 0.00 2.41
99 100 4.574828 ACGCTGAACTACTGATGTTTTTGT 59.425 37.500 0.00 0.00 0.00 2.83
100 101 4.905866 CACGCTGAACTACTGATGTTTTTG 59.094 41.667 0.00 0.00 0.00 2.44
101 102 4.574828 ACACGCTGAACTACTGATGTTTTT 59.425 37.500 0.00 0.00 0.00 1.94
102 103 4.024893 CACACGCTGAACTACTGATGTTTT 60.025 41.667 0.00 0.00 0.00 2.43
103 104 3.494626 CACACGCTGAACTACTGATGTTT 59.505 43.478 0.00 0.00 0.00 2.83
104 105 3.059884 CACACGCTGAACTACTGATGTT 58.940 45.455 0.00 0.00 0.00 2.71
105 106 2.035961 ACACACGCTGAACTACTGATGT 59.964 45.455 0.00 0.00 0.00 3.06
106 107 2.409715 CACACACGCTGAACTACTGATG 59.590 50.000 0.00 0.00 0.00 3.07
107 108 2.677199 CACACACGCTGAACTACTGAT 58.323 47.619 0.00 0.00 0.00 2.90
108 109 1.868109 GCACACACGCTGAACTACTGA 60.868 52.381 0.00 0.00 0.00 3.41
109 110 0.508641 GCACACACGCTGAACTACTG 59.491 55.000 0.00 0.00 0.00 2.74
110 111 0.389391 AGCACACACGCTGAACTACT 59.611 50.000 0.00 0.00 41.85 2.57
111 112 1.719780 GTAGCACACACGCTGAACTAC 59.280 52.381 0.00 0.00 43.68 2.73
112 113 1.338655 TGTAGCACACACGCTGAACTA 59.661 47.619 0.00 0.00 43.68 2.24
113 114 0.104120 TGTAGCACACACGCTGAACT 59.896 50.000 0.00 0.00 43.68 3.01
114 115 0.934496 TTGTAGCACACACGCTGAAC 59.066 50.000 0.00 0.00 43.68 3.18
115 116 0.934496 GTTGTAGCACACACGCTGAA 59.066 50.000 0.00 0.00 43.68 3.02
116 117 0.179097 TGTTGTAGCACACACGCTGA 60.179 50.000 0.00 0.00 43.68 4.26
117 118 0.233074 CTGTTGTAGCACACACGCTG 59.767 55.000 0.00 0.00 43.68 5.18
118 119 0.179084 ACTGTTGTAGCACACACGCT 60.179 50.000 0.00 0.00 46.26 5.07
119 120 0.232303 GACTGTTGTAGCACACACGC 59.768 55.000 0.00 0.00 36.69 5.34
120 121 1.566404 TGACTGTTGTAGCACACACG 58.434 50.000 0.00 0.00 36.69 4.49
121 122 3.374058 AGTTTGACTGTTGTAGCACACAC 59.626 43.478 0.00 0.00 36.69 3.82
122 123 3.373748 CAGTTTGACTGTTGTAGCACACA 59.626 43.478 0.00 0.00 41.19 3.72
123 124 3.621268 TCAGTTTGACTGTTGTAGCACAC 59.379 43.478 7.85 0.00 46.03 3.82
124 125 3.867857 TCAGTTTGACTGTTGTAGCACA 58.132 40.909 7.85 0.00 46.03 4.57
125 126 4.875544 TTCAGTTTGACTGTTGTAGCAC 57.124 40.909 7.85 0.00 46.03 4.40
126 127 5.888691 TTTTCAGTTTGACTGTTGTAGCA 57.111 34.783 7.85 0.00 46.03 3.49
127 128 6.322491 AGTTTTTCAGTTTGACTGTTGTAGC 58.678 36.000 7.85 0.00 46.03 3.58
128 129 9.274065 GTTAGTTTTTCAGTTTGACTGTTGTAG 57.726 33.333 7.85 0.00 46.03 2.74
129 130 7.958567 CGTTAGTTTTTCAGTTTGACTGTTGTA 59.041 33.333 7.85 0.00 46.03 2.41
130 131 6.799925 CGTTAGTTTTTCAGTTTGACTGTTGT 59.200 34.615 7.85 0.00 46.03 3.32
131 132 7.007099 GTCGTTAGTTTTTCAGTTTGACTGTTG 59.993 37.037 7.85 0.00 46.03 3.33
132 133 7.019418 GTCGTTAGTTTTTCAGTTTGACTGTT 58.981 34.615 7.85 0.00 46.03 3.16
133 134 6.540205 GTCGTTAGTTTTTCAGTTTGACTGT 58.460 36.000 7.85 0.00 46.03 3.55
135 136 5.725864 GCGTCGTTAGTTTTTCAGTTTGACT 60.726 40.000 0.00 0.00 0.00 3.41
136 137 4.432345 GCGTCGTTAGTTTTTCAGTTTGAC 59.568 41.667 0.00 0.00 0.00 3.18
137 138 4.580528 GCGTCGTTAGTTTTTCAGTTTGA 58.419 39.130 0.00 0.00 0.00 2.69
138 139 3.413142 CGCGTCGTTAGTTTTTCAGTTTG 59.587 43.478 0.00 0.00 0.00 2.93
139 140 3.062504 ACGCGTCGTTAGTTTTTCAGTTT 59.937 39.130 5.58 0.00 36.35 2.66
140 141 2.604462 ACGCGTCGTTAGTTTTTCAGTT 59.396 40.909 5.58 0.00 36.35 3.16
141 142 2.195922 ACGCGTCGTTAGTTTTTCAGT 58.804 42.857 5.58 0.00 36.35 3.41
142 143 2.916735 ACGCGTCGTTAGTTTTTCAG 57.083 45.000 5.58 0.00 36.35 3.02
153 154 2.877974 GCTGAACCAAACGCGTCGT 61.878 57.895 14.44 6.47 43.97 4.34
154 155 2.127758 GCTGAACCAAACGCGTCG 60.128 61.111 14.44 6.98 0.00 5.12
155 156 2.127758 CGCTGAACCAAACGCGTC 60.128 61.111 14.44 0.00 40.64 5.19
156 157 2.586635 TCGCTGAACCAAACGCGT 60.587 55.556 5.58 5.58 45.25 6.01
157 158 1.626654 ATCTCGCTGAACCAAACGCG 61.627 55.000 3.53 3.53 46.28 6.01
158 159 0.179215 CATCTCGCTGAACCAAACGC 60.179 55.000 0.00 0.00 0.00 4.84
159 160 0.443869 CCATCTCGCTGAACCAAACG 59.556 55.000 0.00 0.00 0.00 3.60
160 161 1.197721 CACCATCTCGCTGAACCAAAC 59.802 52.381 0.00 0.00 0.00 2.93
161 162 1.522668 CACCATCTCGCTGAACCAAA 58.477 50.000 0.00 0.00 0.00 3.28
162 163 0.955428 GCACCATCTCGCTGAACCAA 60.955 55.000 0.00 0.00 0.00 3.67
163 164 1.375908 GCACCATCTCGCTGAACCA 60.376 57.895 0.00 0.00 0.00 3.67
164 165 2.456119 CGCACCATCTCGCTGAACC 61.456 63.158 0.00 0.00 0.00 3.62
165 166 2.456119 CCGCACCATCTCGCTGAAC 61.456 63.158 0.00 0.00 0.00 3.18
166 167 2.125552 CCGCACCATCTCGCTGAA 60.126 61.111 0.00 0.00 0.00 3.02
167 168 2.449031 AAACCGCACCATCTCGCTGA 62.449 55.000 0.00 0.00 0.00 4.26
168 169 1.970917 GAAACCGCACCATCTCGCTG 61.971 60.000 0.00 0.00 0.00 5.18
169 170 1.741770 GAAACCGCACCATCTCGCT 60.742 57.895 0.00 0.00 0.00 4.93
170 171 1.741770 AGAAACCGCACCATCTCGC 60.742 57.895 0.00 0.00 0.00 5.03
171 172 0.389817 TCAGAAACCGCACCATCTCG 60.390 55.000 0.00 0.00 0.00 4.04
172 173 1.936547 GATCAGAAACCGCACCATCTC 59.063 52.381 0.00 0.00 0.00 2.75
173 174 1.407437 GGATCAGAAACCGCACCATCT 60.407 52.381 0.00 0.00 0.00 2.90
174 175 1.017387 GGATCAGAAACCGCACCATC 58.983 55.000 0.00 0.00 0.00 3.51
175 176 0.394352 GGGATCAGAAACCGCACCAT 60.394 55.000 0.00 0.00 0.00 3.55
176 177 1.002624 GGGATCAGAAACCGCACCA 60.003 57.895 0.00 0.00 0.00 4.17
177 178 1.749258 GGGGATCAGAAACCGCACC 60.749 63.158 0.00 0.00 38.66 5.01
178 179 1.002624 TGGGGATCAGAAACCGCAC 60.003 57.895 11.10 0.00 42.57 5.34
179 180 1.002624 GTGGGGATCAGAAACCGCA 60.003 57.895 11.10 11.10 44.58 5.69
180 181 2.106683 CGTGGGGATCAGAAACCGC 61.107 63.158 0.00 7.00 39.15 5.68
181 182 2.106683 GCGTGGGGATCAGAAACCG 61.107 63.158 0.00 0.00 0.00 4.44
182 183 0.322546 AAGCGTGGGGATCAGAAACC 60.323 55.000 0.00 0.00 0.00 3.27
183 184 1.468914 GAAAGCGTGGGGATCAGAAAC 59.531 52.381 0.00 0.00 0.00 2.78
184 185 1.351017 AGAAAGCGTGGGGATCAGAAA 59.649 47.619 0.00 0.00 0.00 2.52
185 186 0.984230 AGAAAGCGTGGGGATCAGAA 59.016 50.000 0.00 0.00 0.00 3.02
186 187 0.250234 CAGAAAGCGTGGGGATCAGA 59.750 55.000 0.00 0.00 0.00 3.27
187 188 0.250234 TCAGAAAGCGTGGGGATCAG 59.750 55.000 0.00 0.00 0.00 2.90
188 189 0.690192 TTCAGAAAGCGTGGGGATCA 59.310 50.000 0.00 0.00 0.00 2.92
189 190 1.821216 TTTCAGAAAGCGTGGGGATC 58.179 50.000 0.00 0.00 0.00 3.36
190 191 1.886542 GTTTTCAGAAAGCGTGGGGAT 59.113 47.619 0.00 0.00 0.00 3.85
191 192 1.314730 GTTTTCAGAAAGCGTGGGGA 58.685 50.000 0.00 0.00 0.00 4.81
192 193 0.040425 CGTTTTCAGAAAGCGTGGGG 60.040 55.000 20.54 0.00 39.73 4.96
193 194 0.040425 CCGTTTTCAGAAAGCGTGGG 60.040 55.000 24.92 10.74 42.46 4.61
194 195 0.661020 ACCGTTTTCAGAAAGCGTGG 59.339 50.000 24.92 15.82 42.46 4.94
195 196 2.798283 TCTACCGTTTTCAGAAAGCGTG 59.202 45.455 24.92 19.38 42.46 5.34
196 197 3.102052 TCTACCGTTTTCAGAAAGCGT 57.898 42.857 24.92 17.16 42.46 5.07
197 198 4.394795 CAATCTACCGTTTTCAGAAAGCG 58.605 43.478 21.55 21.55 43.42 4.68
198 199 4.159120 GCAATCTACCGTTTTCAGAAAGC 58.841 43.478 0.00 0.00 0.00 3.51
199 200 4.084013 ACGCAATCTACCGTTTTCAGAAAG 60.084 41.667 0.00 0.00 33.26 2.62
200 201 3.810941 ACGCAATCTACCGTTTTCAGAAA 59.189 39.130 0.00 0.00 33.26 2.52
201 202 3.185594 CACGCAATCTACCGTTTTCAGAA 59.814 43.478 0.00 0.00 35.17 3.02
202 203 2.734606 CACGCAATCTACCGTTTTCAGA 59.265 45.455 0.00 0.00 35.17 3.27
203 204 2.724839 GCACGCAATCTACCGTTTTCAG 60.725 50.000 0.00 0.00 35.17 3.02
204 205 1.195900 GCACGCAATCTACCGTTTTCA 59.804 47.619 0.00 0.00 35.17 2.69
205 206 1.463444 AGCACGCAATCTACCGTTTTC 59.537 47.619 0.00 0.00 35.17 2.29
206 207 1.519408 AGCACGCAATCTACCGTTTT 58.481 45.000 0.00 0.00 35.17 2.43
207 208 2.268298 CTAGCACGCAATCTACCGTTT 58.732 47.619 0.00 0.00 35.17 3.60
208 209 1.470979 CCTAGCACGCAATCTACCGTT 60.471 52.381 0.00 0.00 35.17 4.44
209 210 0.102481 CCTAGCACGCAATCTACCGT 59.898 55.000 0.00 0.00 38.35 4.83
210 211 0.102481 ACCTAGCACGCAATCTACCG 59.898 55.000 0.00 0.00 0.00 4.02
211 212 1.409427 AGACCTAGCACGCAATCTACC 59.591 52.381 0.00 0.00 0.00 3.18
212 213 2.873133 AGACCTAGCACGCAATCTAC 57.127 50.000 0.00 0.00 0.00 2.59
213 214 3.521560 CAAAGACCTAGCACGCAATCTA 58.478 45.455 0.00 0.00 0.00 1.98
214 215 2.350522 CAAAGACCTAGCACGCAATCT 58.649 47.619 0.00 0.00 0.00 2.40
215 216 1.398390 CCAAAGACCTAGCACGCAATC 59.602 52.381 0.00 0.00 0.00 2.67
216 217 1.453155 CCAAAGACCTAGCACGCAAT 58.547 50.000 0.00 0.00 0.00 3.56
217 218 1.234615 GCCAAAGACCTAGCACGCAA 61.235 55.000 0.00 0.00 0.00 4.85
218 219 1.671054 GCCAAAGACCTAGCACGCA 60.671 57.895 0.00 0.00 0.00 5.24
219 220 1.234615 TTGCCAAAGACCTAGCACGC 61.235 55.000 0.00 0.00 34.37 5.34
220 221 0.517316 GTTGCCAAAGACCTAGCACG 59.483 55.000 0.00 0.00 34.37 5.34
221 222 1.604604 TGTTGCCAAAGACCTAGCAC 58.395 50.000 0.00 0.00 34.37 4.40
222 223 1.953686 GTTGTTGCCAAAGACCTAGCA 59.046 47.619 0.00 0.00 30.94 3.49
223 224 1.069227 CGTTGTTGCCAAAGACCTAGC 60.069 52.381 0.00 0.00 32.55 3.42
224 225 1.535462 CCGTTGTTGCCAAAGACCTAG 59.465 52.381 0.00 0.00 32.55 3.02
225 226 1.134037 ACCGTTGTTGCCAAAGACCTA 60.134 47.619 0.00 0.00 32.55 3.08
226 227 0.395173 ACCGTTGTTGCCAAAGACCT 60.395 50.000 0.00 0.00 32.55 3.85
227 228 0.458260 AACCGTTGTTGCCAAAGACC 59.542 50.000 0.00 0.00 32.55 3.85
228 229 2.159296 AGAAACCGTTGTTGCCAAAGAC 60.159 45.455 0.00 0.00 34.13 3.01
229 230 2.096248 AGAAACCGTTGTTGCCAAAGA 58.904 42.857 0.00 0.00 34.13 2.52
230 231 2.159310 TCAGAAACCGTTGTTGCCAAAG 60.159 45.455 0.00 0.00 34.13 2.77
231 232 1.819288 TCAGAAACCGTTGTTGCCAAA 59.181 42.857 0.00 0.00 34.13 3.28
232 233 1.464734 TCAGAAACCGTTGTTGCCAA 58.535 45.000 0.00 0.00 34.13 4.52
233 234 1.686355 ATCAGAAACCGTTGTTGCCA 58.314 45.000 0.00 0.00 34.13 4.92
234 235 2.412325 CGTATCAGAAACCGTTGTTGCC 60.412 50.000 0.00 0.00 34.13 4.52
235 236 2.834689 CGTATCAGAAACCGTTGTTGC 58.165 47.619 0.00 0.00 34.13 4.17
236 237 2.720590 CGCGTATCAGAAACCGTTGTTG 60.721 50.000 0.00 0.00 34.13 3.33
237 238 1.458064 CGCGTATCAGAAACCGTTGTT 59.542 47.619 0.00 0.00 35.82 2.83
238 239 1.065358 CGCGTATCAGAAACCGTTGT 58.935 50.000 0.00 0.00 0.00 3.32
239 240 0.368907 CCGCGTATCAGAAACCGTTG 59.631 55.000 4.92 0.00 0.00 4.10
240 241 1.356527 GCCGCGTATCAGAAACCGTT 61.357 55.000 4.92 0.00 0.00 4.44
241 242 1.808390 GCCGCGTATCAGAAACCGT 60.808 57.895 4.92 0.00 0.00 4.83
242 243 1.082117 AAGCCGCGTATCAGAAACCG 61.082 55.000 4.92 0.00 0.00 4.44
243 244 0.651031 GAAGCCGCGTATCAGAAACC 59.349 55.000 4.92 0.00 0.00 3.27
244 245 0.297820 CGAAGCCGCGTATCAGAAAC 59.702 55.000 4.92 0.00 0.00 2.78
245 246 2.660944 CGAAGCCGCGTATCAGAAA 58.339 52.632 4.92 0.00 0.00 2.52
246 247 4.395080 CGAAGCCGCGTATCAGAA 57.605 55.556 4.92 0.00 0.00 3.02
256 257 3.003056 AGTTTGGACTTTGCGAAGCCG 62.003 52.381 13.93 0.00 44.42 5.52
257 258 0.668535 AGTTTGGACTTTGCGAAGCC 59.331 50.000 13.93 15.27 44.42 4.35
258 259 2.665794 GCTAGTTTGGACTTTGCGAAGC 60.666 50.000 13.93 6.59 46.09 3.86
259 260 2.095718 GGCTAGTTTGGACTTTGCGAAG 60.096 50.000 12.41 12.41 37.33 3.79
260 261 1.877443 GGCTAGTTTGGACTTTGCGAA 59.123 47.619 0.00 0.00 37.33 4.70
261 262 1.519408 GGCTAGTTTGGACTTTGCGA 58.481 50.000 0.00 0.00 37.33 5.10
262 263 0.165944 CGGCTAGTTTGGACTTTGCG 59.834 55.000 0.00 0.00 37.33 4.85
263 264 1.464997 CTCGGCTAGTTTGGACTTTGC 59.535 52.381 0.00 0.00 37.33 3.68
264 265 1.464997 GCTCGGCTAGTTTGGACTTTG 59.535 52.381 0.00 0.00 37.33 2.77
265 266 1.809684 GCTCGGCTAGTTTGGACTTT 58.190 50.000 0.00 0.00 37.33 2.66
266 267 0.389948 CGCTCGGCTAGTTTGGACTT 60.390 55.000 0.00 0.00 37.33 3.01
267 268 1.215647 CGCTCGGCTAGTTTGGACT 59.784 57.895 0.00 0.00 39.97 3.85
268 269 0.389426 TTCGCTCGGCTAGTTTGGAC 60.389 55.000 0.00 0.00 0.00 4.02
269 270 0.108804 CTTCGCTCGGCTAGTTTGGA 60.109 55.000 0.00 0.00 0.00 3.53
270 271 1.084370 CCTTCGCTCGGCTAGTTTGG 61.084 60.000 0.00 0.00 0.00 3.28
271 272 0.108804 TCCTTCGCTCGGCTAGTTTG 60.109 55.000 0.00 0.00 0.00 2.93
272 273 0.824759 ATCCTTCGCTCGGCTAGTTT 59.175 50.000 0.00 0.00 0.00 2.66
273 274 0.103208 CATCCTTCGCTCGGCTAGTT 59.897 55.000 0.00 0.00 0.00 2.24
274 275 0.752009 TCATCCTTCGCTCGGCTAGT 60.752 55.000 0.00 0.00 0.00 2.57
275 276 0.600557 ATCATCCTTCGCTCGGCTAG 59.399 55.000 0.00 0.00 0.00 3.42
276 277 1.040646 AATCATCCTTCGCTCGGCTA 58.959 50.000 0.00 0.00 0.00 3.93
277 278 1.000283 CTAATCATCCTTCGCTCGGCT 60.000 52.381 0.00 0.00 0.00 5.52
278 279 1.423395 CTAATCATCCTTCGCTCGGC 58.577 55.000 0.00 0.00 0.00 5.54
279 280 1.269778 TGCTAATCATCCTTCGCTCGG 60.270 52.381 0.00 0.00 0.00 4.63
280 281 2.140065 TGCTAATCATCCTTCGCTCG 57.860 50.000 0.00 0.00 0.00 5.03
281 282 3.002759 GGTTTGCTAATCATCCTTCGCTC 59.997 47.826 0.00 0.00 0.00 5.03
282 283 2.945668 GGTTTGCTAATCATCCTTCGCT 59.054 45.455 0.00 0.00 0.00 4.93
283 284 2.286418 CGGTTTGCTAATCATCCTTCGC 60.286 50.000 0.00 0.00 0.00 4.70
284 285 2.287915 CCGGTTTGCTAATCATCCTTCG 59.712 50.000 0.00 0.00 0.00 3.79
285 286 2.618709 CCCGGTTTGCTAATCATCCTTC 59.381 50.000 0.00 0.00 0.00 3.46
286 287 2.654863 CCCGGTTTGCTAATCATCCTT 58.345 47.619 0.00 0.00 0.00 3.36
287 288 1.750682 GCCCGGTTTGCTAATCATCCT 60.751 52.381 0.00 0.00 0.00 3.24
288 289 0.668535 GCCCGGTTTGCTAATCATCC 59.331 55.000 0.00 0.00 0.00 3.51
289 290 0.307760 CGCCCGGTTTGCTAATCATC 59.692 55.000 0.00 0.00 0.00 2.92
290 291 0.107410 TCGCCCGGTTTGCTAATCAT 60.107 50.000 0.00 0.00 0.00 2.45
291 292 0.321741 TTCGCCCGGTTTGCTAATCA 60.322 50.000 0.00 0.00 0.00 2.57
292 293 0.806241 TTTCGCCCGGTTTGCTAATC 59.194 50.000 0.00 0.00 0.00 1.75
293 294 0.524414 GTTTCGCCCGGTTTGCTAAT 59.476 50.000 0.00 0.00 0.00 1.73
294 295 1.517210 GGTTTCGCCCGGTTTGCTAA 61.517 55.000 0.00 0.00 0.00 3.09
295 296 1.967494 GGTTTCGCCCGGTTTGCTA 60.967 57.895 0.00 0.00 0.00 3.49
296 297 3.292159 GGTTTCGCCCGGTTTGCT 61.292 61.111 0.00 0.00 0.00 3.91
297 298 4.693525 CGGTTTCGCCCGGTTTGC 62.694 66.667 0.00 0.00 44.32 3.68
304 305 1.293267 TGATTCGTTCGGTTTCGCCC 61.293 55.000 0.00 0.00 36.13 6.13
305 306 0.513820 TTGATTCGTTCGGTTTCGCC 59.486 50.000 0.00 0.00 36.13 5.54
306 307 1.967235 GTTTGATTCGTTCGGTTTCGC 59.033 47.619 0.00 0.00 36.13 4.70
307 308 3.241783 TGTTTGATTCGTTCGGTTTCG 57.758 42.857 0.00 0.00 37.82 3.46
308 309 4.085772 GCTTTGTTTGATTCGTTCGGTTTC 60.086 41.667 0.00 0.00 0.00 2.78
309 310 3.794564 GCTTTGTTTGATTCGTTCGGTTT 59.205 39.130 0.00 0.00 0.00 3.27
310 311 3.368495 GCTTTGTTTGATTCGTTCGGTT 58.632 40.909 0.00 0.00 0.00 4.44
311 312 2.287368 GGCTTTGTTTGATTCGTTCGGT 60.287 45.455 0.00 0.00 0.00 4.69
312 313 2.287308 TGGCTTTGTTTGATTCGTTCGG 60.287 45.455 0.00 0.00 0.00 4.30
313 314 2.973224 CTGGCTTTGTTTGATTCGTTCG 59.027 45.455 0.00 0.00 0.00 3.95
314 315 3.964909 ACTGGCTTTGTTTGATTCGTTC 58.035 40.909 0.00 0.00 0.00 3.95
315 316 5.335661 GGATACTGGCTTTGTTTGATTCGTT 60.336 40.000 0.00 0.00 0.00 3.85
316 317 4.156008 GGATACTGGCTTTGTTTGATTCGT 59.844 41.667 0.00 0.00 0.00 3.85
317 318 4.662145 GGATACTGGCTTTGTTTGATTCG 58.338 43.478 0.00 0.00 0.00 3.34
318 319 4.156008 ACGGATACTGGCTTTGTTTGATTC 59.844 41.667 0.00 0.00 0.00 2.52
319 320 4.079253 ACGGATACTGGCTTTGTTTGATT 58.921 39.130 0.00 0.00 0.00 2.57
320 321 3.686016 ACGGATACTGGCTTTGTTTGAT 58.314 40.909 0.00 0.00 0.00 2.57
321 322 3.134574 ACGGATACTGGCTTTGTTTGA 57.865 42.857 0.00 0.00 0.00 2.69
322 323 5.365403 TTTACGGATACTGGCTTTGTTTG 57.635 39.130 0.00 0.00 0.00 2.93
323 324 6.394025 TTTTTACGGATACTGGCTTTGTTT 57.606 33.333 0.00 0.00 0.00 2.83
343 344 1.401539 GCGCTGCTTCCGATTCTTTTT 60.402 47.619 0.00 0.00 0.00 1.94
344 345 0.169009 GCGCTGCTTCCGATTCTTTT 59.831 50.000 0.00 0.00 0.00 2.27
345 346 0.674895 AGCGCTGCTTCCGATTCTTT 60.675 50.000 10.39 0.00 33.89 2.52
346 347 0.674895 AAGCGCTGCTTCCGATTCTT 60.675 50.000 12.58 0.00 46.77 2.52
347 348 1.078848 AAGCGCTGCTTCCGATTCT 60.079 52.632 12.58 0.00 46.77 2.40
348 349 3.490890 AAGCGCTGCTTCCGATTC 58.509 55.556 12.58 0.00 46.77 2.52
356 357 2.190578 GTATGGGGAAGCGCTGCT 59.809 61.111 16.75 0.00 42.56 4.24
357 358 2.902343 GGTATGGGGAAGCGCTGC 60.902 66.667 12.58 9.65 0.00 5.25
358 359 2.587322 TTCGGTATGGGGAAGCGCTG 62.587 60.000 12.58 0.00 37.73 5.18
359 360 1.906105 TTTCGGTATGGGGAAGCGCT 61.906 55.000 2.64 2.64 37.73 5.92
360 361 1.450669 TTTCGGTATGGGGAAGCGC 60.451 57.895 0.00 0.00 37.73 5.92
361 362 1.093496 GGTTTCGGTATGGGGAAGCG 61.093 60.000 0.00 0.00 39.11 4.68
362 363 1.093496 CGGTTTCGGTATGGGGAAGC 61.093 60.000 0.00 0.00 0.00 3.86
363 364 0.538118 TCGGTTTCGGTATGGGGAAG 59.462 55.000 0.00 0.00 36.95 3.46
364 365 1.205966 ATCGGTTTCGGTATGGGGAA 58.794 50.000 0.00 0.00 36.95 3.97
365 366 1.205966 AATCGGTTTCGGTATGGGGA 58.794 50.000 0.00 0.00 36.95 4.81
366 367 2.486918 GTAATCGGTTTCGGTATGGGG 58.513 52.381 0.00 0.00 36.95 4.96
367 368 2.129607 CGTAATCGGTTTCGGTATGGG 58.870 52.381 0.00 0.00 36.95 4.00
368 369 2.813061 ACGTAATCGGTTTCGGTATGG 58.187 47.619 12.15 0.00 41.85 2.74
369 370 4.207019 GGTAACGTAATCGGTTTCGGTATG 59.793 45.833 8.46 0.00 41.85 2.39
370 371 4.097892 AGGTAACGTAATCGGTTTCGGTAT 59.902 41.667 8.46 0.00 46.39 2.73
371 372 3.442273 AGGTAACGTAATCGGTTTCGGTA 59.558 43.478 12.15 6.75 46.39 4.02
372 373 2.231235 AGGTAACGTAATCGGTTTCGGT 59.769 45.455 12.15 7.83 46.39 4.69
373 374 2.599973 CAGGTAACGTAATCGGTTTCGG 59.400 50.000 12.15 0.00 46.39 4.30
374 375 3.500982 TCAGGTAACGTAATCGGTTTCG 58.499 45.455 5.85 5.85 46.39 3.46
375 376 3.305361 GCTCAGGTAACGTAATCGGTTTC 59.695 47.826 0.00 0.00 46.39 2.78
376 377 3.256558 GCTCAGGTAACGTAATCGGTTT 58.743 45.455 0.00 0.00 46.39 3.27
377 378 2.231964 TGCTCAGGTAACGTAATCGGTT 59.768 45.455 0.00 0.00 46.39 4.44
378 379 1.820519 TGCTCAGGTAACGTAATCGGT 59.179 47.619 0.00 0.00 46.39 4.69
379 380 2.460918 CTGCTCAGGTAACGTAATCGG 58.539 52.381 0.00 0.00 46.39 4.18
380 381 1.852895 GCTGCTCAGGTAACGTAATCG 59.147 52.381 0.00 0.00 46.39 3.34
381 382 2.888594 TGCTGCTCAGGTAACGTAATC 58.111 47.619 0.00 0.00 46.39 1.75
382 383 3.000727 GTTGCTGCTCAGGTAACGTAAT 58.999 45.455 0.00 0.00 46.39 1.89
383 384 2.409975 GTTGCTGCTCAGGTAACGTAA 58.590 47.619 0.00 0.00 46.39 3.18
384 385 1.337447 GGTTGCTGCTCAGGTAACGTA 60.337 52.381 0.00 0.00 46.39 3.57
385 386 0.602905 GGTTGCTGCTCAGGTAACGT 60.603 55.000 0.00 0.00 46.39 3.99
386 387 0.602638 TGGTTGCTGCTCAGGTAACG 60.603 55.000 0.00 0.00 46.39 3.18
387 388 1.604604 TTGGTTGCTGCTCAGGTAAC 58.395 50.000 0.00 0.00 0.00 2.50
388 389 1.953686 GTTTGGTTGCTGCTCAGGTAA 59.046 47.619 0.00 0.00 0.00 2.85
389 390 1.604604 GTTTGGTTGCTGCTCAGGTA 58.395 50.000 0.00 0.00 0.00 3.08
390 391 1.447317 CGTTTGGTTGCTGCTCAGGT 61.447 55.000 0.00 0.00 0.00 4.00
391 392 1.283793 CGTTTGGTTGCTGCTCAGG 59.716 57.895 0.00 0.00 0.00 3.86
392 393 1.370900 GCGTTTGGTTGCTGCTCAG 60.371 57.895 0.00 0.00 0.00 3.35
393 394 2.721231 GCGTTTGGTTGCTGCTCA 59.279 55.556 0.00 0.00 0.00 4.26
394 395 2.427410 CGCGTTTGGTTGCTGCTC 60.427 61.111 0.00 0.00 0.00 4.26
395 396 3.181169 GACGCGTTTGGTTGCTGCT 62.181 57.895 15.53 0.00 0.00 4.24
396 397 2.725815 GACGCGTTTGGTTGCTGC 60.726 61.111 15.53 0.00 0.00 5.25
397 398 1.823260 TACGACGCGTTTGGTTGCTG 61.823 55.000 15.53 0.00 41.54 4.41
398 399 1.152989 TTACGACGCGTTTGGTTGCT 61.153 50.000 15.53 0.00 41.54 3.91
399 400 0.316032 TTTACGACGCGTTTGGTTGC 60.316 50.000 15.53 0.00 41.54 4.17
400 401 2.303707 ATTTACGACGCGTTTGGTTG 57.696 45.000 15.53 1.94 41.54 3.77
401 402 2.545106 AGAATTTACGACGCGTTTGGTT 59.455 40.909 15.53 4.13 41.54 3.67
402 403 2.137523 AGAATTTACGACGCGTTTGGT 58.862 42.857 15.53 14.81 41.54 3.67
403 404 2.867456 AGAATTTACGACGCGTTTGG 57.133 45.000 15.53 8.91 41.54 3.28
404 405 4.901881 AGAAAAGAATTTACGACGCGTTTG 59.098 37.500 15.53 12.46 37.28 2.93
405 406 5.086888 AGAAAAGAATTTACGACGCGTTT 57.913 34.783 15.53 6.34 37.28 3.60
406 407 4.720530 AGAAAAGAATTTACGACGCGTT 57.279 36.364 15.53 0.00 37.28 4.84
407 408 5.827568 TTAGAAAAGAATTTACGACGCGT 57.172 34.783 13.85 13.85 37.28 6.01
408 409 7.252865 CCATTTTAGAAAAGAATTTACGACGCG 60.253 37.037 3.53 3.53 37.28 6.01
409 410 7.536281 ACCATTTTAGAAAAGAATTTACGACGC 59.464 33.333 0.00 0.00 37.28 5.19
410 411 8.944212 ACCATTTTAGAAAAGAATTTACGACG 57.056 30.769 0.00 0.00 37.28 5.12
411 412 9.887406 TGACCATTTTAGAAAAGAATTTACGAC 57.113 29.630 0.00 0.00 37.28 4.34
479 480 2.310349 TGCCCTGAAGCCCTGTAAATTA 59.690 45.455 0.00 0.00 0.00 1.40
486 487 1.106285 GTAAATGCCCTGAAGCCCTG 58.894 55.000 0.00 0.00 0.00 4.45
487 488 0.704076 TGTAAATGCCCTGAAGCCCT 59.296 50.000 0.00 0.00 0.00 5.19
488 489 1.106285 CTGTAAATGCCCTGAAGCCC 58.894 55.000 0.00 0.00 0.00 5.19
491 492 7.572523 TGAATTATCTGTAAATGCCCTGAAG 57.427 36.000 0.00 0.00 0.00 3.02
492 493 7.560991 ACATGAATTATCTGTAAATGCCCTGAA 59.439 33.333 0.00 0.00 0.00 3.02
493 494 7.062322 ACATGAATTATCTGTAAATGCCCTGA 58.938 34.615 0.00 0.00 0.00 3.86
494 495 7.281040 ACATGAATTATCTGTAAATGCCCTG 57.719 36.000 0.00 0.00 0.00 4.45
495 496 8.220559 AGTACATGAATTATCTGTAAATGCCCT 58.779 33.333 0.00 0.00 0.00 5.19
496 497 8.396272 AGTACATGAATTATCTGTAAATGCCC 57.604 34.615 0.00 0.00 0.00 5.36
539 540 3.432252 ACTTTCGGTGATTGCTAGAAACG 59.568 43.478 0.00 0.00 0.00 3.60
600 604 1.339151 ACCTCAGCCCAAACGAGAATC 60.339 52.381 0.00 0.00 0.00 2.52
667 702 3.498397 TGAAACGAAAATGGACTCTCAGC 59.502 43.478 0.00 0.00 0.00 4.26
670 705 5.672321 GCAGATGAAACGAAAATGGACTCTC 60.672 44.000 0.00 0.00 0.00 3.20
671 706 4.154918 GCAGATGAAACGAAAATGGACTCT 59.845 41.667 0.00 0.00 0.00 3.24
718 753 0.674895 GCGCTCTGATTGGTTGGAGT 60.675 55.000 0.00 0.00 0.00 3.85
771 806 3.917760 GGACGGCTCGGATCTGGG 61.918 72.222 0.62 0.00 0.00 4.45
811 847 2.039831 GAGGGATGGTGGGGCCTA 60.040 66.667 0.84 0.00 38.35 3.93
1488 1578 1.600023 TCCACCATGGAACGAACAAC 58.400 50.000 21.47 0.00 45.00 3.32
1534 1624 2.417933 CAGTTACTGATGGCAGCAAGAC 59.582 50.000 6.97 5.82 46.26 3.01
1588 1680 4.481195 GCTCACACCAAGAGGCAA 57.519 55.556 0.00 0.00 39.06 4.52
1594 1686 1.538512 CAATGACAGGCTCACACCAAG 59.461 52.381 0.00 0.00 0.00 3.61
1626 1736 4.515567 GGGATAATCAGATCAACCGTTTCC 59.484 45.833 0.00 0.00 0.00 3.13
1635 1745 6.173427 TCACAAATCGGGATAATCAGATCA 57.827 37.500 0.00 0.00 0.00 2.92
1639 1749 8.931385 AAAATTTCACAAATCGGGATAATCAG 57.069 30.769 0.00 0.00 0.00 2.90
1692 1803 8.992073 CCAAGCTAAAAACTTGAAGCAATTTAT 58.008 29.630 5.12 0.00 45.99 1.40
1718 1834 5.772825 TTTAATACAGCCAAGGCATCATC 57.227 39.130 14.40 0.00 44.88 2.92
1753 1870 5.645067 TCTGAGGCAATCAACAAGATTACTG 59.355 40.000 0.00 0.00 45.06 2.74
1793 1910 3.088532 ACACAGAACTGAACAAGCCAAA 58.911 40.909 8.87 0.00 0.00 3.28
1800 1917 3.134623 AGATGGACACACAGAACTGAACA 59.865 43.478 8.87 0.00 0.00 3.18
1826 1951 9.520204 CAGGATAAAGGCAAATAAACAACATAG 57.480 33.333 0.00 0.00 0.00 2.23
1837 1970 7.978099 AAGGAATTACAGGATAAAGGCAAAT 57.022 32.000 0.00 0.00 0.00 2.32
1838 1971 7.790782 AAAGGAATTACAGGATAAAGGCAAA 57.209 32.000 0.00 0.00 0.00 3.68
1839 1972 7.453126 TCAAAAGGAATTACAGGATAAAGGCAA 59.547 33.333 0.00 0.00 0.00 4.52
1842 1975 8.633561 GGATCAAAAGGAATTACAGGATAAAGG 58.366 37.037 0.00 0.00 0.00 3.11
1843 1976 8.633561 GGGATCAAAAGGAATTACAGGATAAAG 58.366 37.037 0.00 0.00 0.00 1.85
1871 2008 2.810274 GAGAGTTGATTGCAGCAGTCAA 59.190 45.455 25.13 25.13 37.66 3.18
1913 2052 7.331791 ACATCTCTTGTCCTAATTTACCAGTC 58.668 38.462 0.00 0.00 30.89 3.51
1961 2106 8.251481 ACAGTCGTGTTAAAGACAGTATGTACG 61.251 40.741 8.91 0.00 42.56 3.67
1996 2141 6.989169 GCAAGTAATCCATCAGATCTTGTACT 59.011 38.462 0.00 0.00 38.33 2.73
1998 2143 6.763135 GTGCAAGTAATCCATCAGATCTTGTA 59.237 38.462 0.00 2.87 38.33 2.41
1999 2144 5.587844 GTGCAAGTAATCCATCAGATCTTGT 59.412 40.000 0.00 0.00 38.33 3.16
2000 2145 5.008415 GGTGCAAGTAATCCATCAGATCTTG 59.992 44.000 0.00 3.81 38.75 3.02
2001 2146 5.104193 AGGTGCAAGTAATCCATCAGATCTT 60.104 40.000 0.00 0.00 32.47 2.40
2002 2147 4.411540 AGGTGCAAGTAATCCATCAGATCT 59.588 41.667 0.00 0.00 32.47 2.75
2043 2201 0.383949 GCCACACCGTTGACAACATT 59.616 50.000 18.09 1.13 0.00 2.71
2181 2341 5.327091 CCAACAGAATTATGTGAAAGAGCG 58.673 41.667 6.46 0.00 32.52 5.03
2187 2347 7.112122 ACTAGATGCCAACAGAATTATGTGAA 58.888 34.615 6.46 0.00 32.52 3.18
2188 2348 6.653020 ACTAGATGCCAACAGAATTATGTGA 58.347 36.000 6.46 0.00 32.52 3.58
2229 2573 2.025155 CTCGTCCCTATCGGATATGGG 58.975 57.143 18.84 18.84 44.66 4.00
2230 2574 2.025155 CCTCGTCCCTATCGGATATGG 58.975 57.143 11.79 11.79 44.66 2.74
2231 2575 3.000684 TCCTCGTCCCTATCGGATATG 57.999 52.381 0.00 0.00 44.66 1.78
2232 2576 3.622630 CTTCCTCGTCCCTATCGGATAT 58.377 50.000 0.00 0.00 44.66 1.63
2282 2626 6.357367 ACCCTTTGGCTCACTAATTATGTAG 58.643 40.000 0.00 0.00 33.59 2.74
2286 2630 6.252995 TGAAACCCTTTGGCTCACTAATTAT 58.747 36.000 0.00 0.00 33.59 1.28
2352 2696 6.611381 TCATCTTCTTTTTGTAAGCAATCCG 58.389 36.000 0.00 0.00 34.18 4.18
2354 2698 7.867403 TGGTTCATCTTCTTTTTGTAAGCAATC 59.133 33.333 0.00 0.00 34.18 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.