Multiple sequence alignment - TraesCS1A01G359800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G359800 chr1A 100.000 2646 0 0 1 2646 541318293 541320938 0.000000e+00 4887.0
1 TraesCS1A01G359800 chr1A 95.851 1157 25 12 771 1906 541463642 541462488 0.000000e+00 1849.0
2 TraesCS1A01G359800 chr1A 90.909 198 15 1 2387 2584 541462213 541462019 2.020000e-66 263.0
3 TraesCS1A01G359800 chr1A 89.172 157 16 1 1959 2114 541462470 541462314 7.470000e-46 195.0
4 TraesCS1A01G359800 chr1A 84.328 134 17 4 451 581 105915598 105915730 7.690000e-26 128.0
5 TraesCS1A01G359800 chr1A 95.312 64 3 0 2240 2303 541462285 541462222 4.660000e-18 102.0
6 TraesCS1A01G359800 chr1A 93.750 64 3 1 2331 2393 73351478 73351541 7.800000e-16 95.3
7 TraesCS1A01G359800 chr1B 82.625 1836 158 55 776 2513 608054128 608052356 0.000000e+00 1474.0
8 TraesCS1A01G359800 chr1B 84.941 1441 100 43 756 2114 607429808 607428403 0.000000e+00 1351.0
9 TraesCS1A01G359800 chr1B 91.976 835 40 13 636 1465 606839513 606840325 0.000000e+00 1146.0
10 TraesCS1A01G359800 chr1B 85.070 931 69 31 798 1697 610560515 610561406 0.000000e+00 885.0
11 TraesCS1A01G359800 chr1B 88.671 715 59 13 754 1457 610965287 610965990 0.000000e+00 852.0
12 TraesCS1A01G359800 chr1B 81.481 540 68 22 1777 2300 610561533 610562056 5.270000e-112 414.0
13 TraesCS1A01G359800 chr1B 89.899 198 16 2 2387 2583 608354220 608354026 4.370000e-63 252.0
14 TraesCS1A01G359800 chr1B 92.169 166 13 0 2418 2583 607428250 607428085 4.400000e-58 235.0
15 TraesCS1A01G359800 chr1B 93.151 146 10 0 2162 2307 607428402 607428257 5.740000e-52 215.0
16 TraesCS1A01G359800 chr1B 84.076 157 22 3 2431 2584 610562078 610562234 5.900000e-32 148.0
17 TraesCS1A01G359800 chr1D 90.043 1165 61 30 335 1457 445316843 445317994 0.000000e+00 1458.0
18 TraesCS1A01G359800 chr1D 84.615 1339 117 41 1012 2306 355825267 355826560 0.000000e+00 1249.0
19 TraesCS1A01G359800 chr1D 86.243 945 65 27 798 1700 446436834 446437755 0.000000e+00 965.0
20 TraesCS1A01G359800 chr1D 88.250 783 49 19 771 1526 445387273 445386507 0.000000e+00 896.0
21 TraesCS1A01G359800 chr1D 88.567 726 59 17 756 1459 446558176 446558899 0.000000e+00 859.0
22 TraesCS1A01G359800 chr1D 84.651 873 82 27 1471 2311 445385242 445384390 0.000000e+00 822.0
23 TraesCS1A01G359800 chr1D 86.935 199 22 2 2387 2584 445384388 445384193 1.230000e-53 220.0
24 TraesCS1A01G359800 chr1D 88.793 116 7 3 2191 2300 446438251 446438366 1.280000e-28 137.0
25 TraesCS1A01G359800 chr1D 98.305 59 1 0 2331 2389 128534001 128533943 1.300000e-18 104.0
26 TraesCS1A01G359800 chr6A 85.894 872 76 31 799 1639 67142335 67141480 0.000000e+00 885.0
27 TraesCS1A01G359800 chr6A 93.750 64 4 0 2583 2646 27549482 27549545 2.170000e-16 97.1
28 TraesCS1A01G359800 chr3D 87.550 755 47 31 899 1639 114883246 114882525 0.000000e+00 830.0
29 TraesCS1A01G359800 chr3D 96.875 64 2 0 2583 2646 8000066 8000129 1.000000e-19 108.0
30 TraesCS1A01G359800 chr3D 93.939 66 4 0 2331 2396 609371511 609371576 1.680000e-17 100.0
31 TraesCS1A01G359800 chr3D 91.549 71 4 2 2331 2399 4319571 4319501 2.170000e-16 97.1
32 TraesCS1A01G359800 chr6D 86.020 794 77 20 747 1517 47812082 47812864 0.000000e+00 821.0
33 TraesCS1A01G359800 chr6D 83.399 253 30 7 339 581 200489710 200489960 9.530000e-55 224.0
34 TraesCS1A01G359800 chr2B 93.452 336 20 2 2 335 167835862 167835527 5.090000e-137 497.0
35 TraesCS1A01G359800 chr2B 93.134 335 21 2 2 334 500645432 500645766 8.510000e-135 490.0
36 TraesCS1A01G359800 chr2B 84.932 292 27 12 2009 2296 161027401 161027679 2.010000e-71 279.0
37 TraesCS1A01G359800 chr2B 87.895 190 17 2 2387 2576 161027694 161027877 4.430000e-53 219.0
38 TraesCS1A01G359800 chr2B 80.309 259 27 15 335 581 211612590 211612836 9.740000e-40 174.0
39 TraesCS1A01G359800 chr2B 83.784 74 10 2 2309 2380 782163550 782163623 4.730000e-08 69.4
40 TraesCS1A01G359800 chr4D 93.155 336 20 3 2 334 278286066 278285731 8.510000e-135 490.0
41 TraesCS1A01G359800 chr4D 100.000 38 0 0 339 376 473127940 473127977 1.310000e-08 71.3
42 TraesCS1A01G359800 chr4B 92.836 335 22 2 2 334 391152830 391153164 3.960000e-133 484.0
43 TraesCS1A01G359800 chr4B 81.395 258 37 6 335 582 481525083 481524827 1.610000e-47 200.0
44 TraesCS1A01G359800 chrUn 91.667 336 26 2 1 335 10327102 10326768 5.160000e-127 464.0
45 TraesCS1A01G359800 chr7B 89.614 337 24 4 1 336 14145116 14145442 4.070000e-113 418.0
46 TraesCS1A01G359800 chr7B 78.534 191 36 5 394 581 533636317 533636129 1.290000e-23 121.0
47 TraesCS1A01G359800 chr2A 82.006 339 52 6 1 334 88119951 88120285 2.010000e-71 279.0
48 TraesCS1A01G359800 chr2A 98.305 59 0 1 2331 2388 560782225 560782167 4.660000e-18 102.0
49 TraesCS1A01G359800 chr2A 93.846 65 4 0 2582 2646 558943585 558943649 6.030000e-17 99.0
50 TraesCS1A01G359800 chr2A 89.333 75 4 3 2331 2405 176087172 176087102 1.010000e-14 91.6
51 TraesCS1A01G359800 chr3A 86.454 251 22 5 339 579 747601596 747601348 5.620000e-67 265.0
52 TraesCS1A01G359800 chr6B 80.347 346 56 12 1 337 35567910 35567568 4.370000e-63 252.0
53 TraesCS1A01G359800 chr6B 80.409 342 55 12 1 334 546479281 546478944 1.570000e-62 250.0
54 TraesCS1A01G359800 chr6B 82.558 258 33 9 335 582 514658467 514658212 1.590000e-52 217.0
55 TraesCS1A01G359800 chr3B 79.878 164 27 5 422 582 189388779 189388619 5.990000e-22 115.0
56 TraesCS1A01G359800 chr5D 95.312 64 3 0 2583 2646 134476079 134476016 4.660000e-18 102.0
57 TraesCS1A01G359800 chr5D 96.610 59 2 0 2331 2389 150357939 150357881 6.030000e-17 99.0
58 TraesCS1A01G359800 chr5D 90.411 73 6 1 2574 2646 480838766 480838695 7.800000e-16 95.3
59 TraesCS1A01G359800 chr7D 95.238 63 3 0 2584 2646 548476579 548476517 1.680000e-17 100.0
60 TraesCS1A01G359800 chr5A 95.238 63 3 0 2584 2646 3710834 3710896 1.680000e-17 100.0
61 TraesCS1A01G359800 chr5A 95.238 63 3 0 2584 2646 445192367 445192429 1.680000e-17 100.0
62 TraesCS1A01G359800 chr5B 93.846 65 4 0 2582 2646 423739146 423739082 6.030000e-17 99.0
63 TraesCS1A01G359800 chr5B 83.951 81 9 4 2312 2389 24011393 24011472 1.020000e-09 75.0
64 TraesCS1A01G359800 chr2D 98.214 56 1 0 2330 2385 511529754 511529809 6.030000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G359800 chr1A 541318293 541320938 2645 False 4887.000000 4887 100.000000 1 2646 1 chr1A.!!$F3 2645
1 TraesCS1A01G359800 chr1A 541462019 541463642 1623 True 602.250000 1849 92.811000 771 2584 4 chr1A.!!$R1 1813
2 TraesCS1A01G359800 chr1B 608052356 608054128 1772 True 1474.000000 1474 82.625000 776 2513 1 chr1B.!!$R1 1737
3 TraesCS1A01G359800 chr1B 606839513 606840325 812 False 1146.000000 1146 91.976000 636 1465 1 chr1B.!!$F1 829
4 TraesCS1A01G359800 chr1B 610965287 610965990 703 False 852.000000 852 88.671000 754 1457 1 chr1B.!!$F2 703
5 TraesCS1A01G359800 chr1B 607428085 607429808 1723 True 600.333333 1351 90.087000 756 2583 3 chr1B.!!$R3 1827
6 TraesCS1A01G359800 chr1B 610560515 610562234 1719 False 482.333333 885 83.542333 798 2584 3 chr1B.!!$F3 1786
7 TraesCS1A01G359800 chr1D 445316843 445317994 1151 False 1458.000000 1458 90.043000 335 1457 1 chr1D.!!$F2 1122
8 TraesCS1A01G359800 chr1D 355825267 355826560 1293 False 1249.000000 1249 84.615000 1012 2306 1 chr1D.!!$F1 1294
9 TraesCS1A01G359800 chr1D 446558176 446558899 723 False 859.000000 859 88.567000 756 1459 1 chr1D.!!$F3 703
10 TraesCS1A01G359800 chr1D 445384193 445387273 3080 True 646.000000 896 86.612000 771 2584 3 chr1D.!!$R2 1813
11 TraesCS1A01G359800 chr1D 446436834 446438366 1532 False 551.000000 965 87.518000 798 2300 2 chr1D.!!$F4 1502
12 TraesCS1A01G359800 chr6A 67141480 67142335 855 True 885.000000 885 85.894000 799 1639 1 chr6A.!!$R1 840
13 TraesCS1A01G359800 chr3D 114882525 114883246 721 True 830.000000 830 87.550000 899 1639 1 chr3D.!!$R2 740
14 TraesCS1A01G359800 chr6D 47812082 47812864 782 False 821.000000 821 86.020000 747 1517 1 chr6D.!!$F1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 334 0.035056 AAATCTCAAGACCGGCCCTG 60.035 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 3944 1.270625 TGCTACAAAACGGAGGGAGTG 60.271 52.381 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.574516 AGTCAAATGTTAGGTCAAAATAGACTT 57.425 29.630 0.00 0.00 38.57 3.01
64 65 9.070179 TGTTAGGTCAAAATAGACTTAAAACCC 57.930 33.333 0.00 0.00 40.35 4.11
65 66 6.812879 AGGTCAAAATAGACTTAAAACCCG 57.187 37.500 0.00 0.00 38.57 5.28
66 67 6.536447 AGGTCAAAATAGACTTAAAACCCGA 58.464 36.000 0.00 0.00 38.57 5.14
67 68 6.653740 AGGTCAAAATAGACTTAAAACCCGAG 59.346 38.462 0.00 0.00 38.57 4.63
68 69 6.128090 GGTCAAAATAGACTTAAAACCCGAGG 60.128 42.308 0.00 0.00 38.57 4.63
69 70 6.652062 GTCAAAATAGACTTAAAACCCGAGGA 59.348 38.462 0.00 0.00 35.65 3.71
70 71 6.877322 TCAAAATAGACTTAAAACCCGAGGAG 59.123 38.462 0.00 0.00 0.00 3.69
71 72 5.354842 AATAGACTTAAAACCCGAGGAGG 57.645 43.478 0.00 0.00 40.63 4.30
72 73 2.898662 AGACTTAAAACCCGAGGAGGA 58.101 47.619 0.00 0.00 45.00 3.71
73 74 2.566279 AGACTTAAAACCCGAGGAGGAC 59.434 50.000 0.00 0.00 45.00 3.85
74 75 2.566279 GACTTAAAACCCGAGGAGGACT 59.434 50.000 0.00 0.00 45.00 3.85
75 76 3.766051 GACTTAAAACCCGAGGAGGACTA 59.234 47.826 0.00 0.00 45.00 2.59
76 77 4.162651 ACTTAAAACCCGAGGAGGACTAA 58.837 43.478 0.00 0.00 45.00 2.24
77 78 4.781621 ACTTAAAACCCGAGGAGGACTAAT 59.218 41.667 0.00 0.00 45.00 1.73
78 79 5.960202 ACTTAAAACCCGAGGAGGACTAATA 59.040 40.000 0.00 0.00 45.00 0.98
79 80 6.441604 ACTTAAAACCCGAGGAGGACTAATAA 59.558 38.462 0.00 0.00 45.00 1.40
80 81 5.767277 AAAACCCGAGGAGGACTAATAAA 57.233 39.130 0.00 0.00 45.00 1.40
81 82 5.970501 AAACCCGAGGAGGACTAATAAAT 57.029 39.130 0.00 0.00 45.00 1.40
82 83 5.970501 AACCCGAGGAGGACTAATAAATT 57.029 39.130 0.00 0.00 45.00 1.82
83 84 5.548181 ACCCGAGGAGGACTAATAAATTC 57.452 43.478 0.00 0.00 45.00 2.17
84 85 4.038883 ACCCGAGGAGGACTAATAAATTCG 59.961 45.833 0.00 0.00 45.00 3.34
85 86 4.280174 CCCGAGGAGGACTAATAAATTCGA 59.720 45.833 0.00 0.00 45.00 3.71
86 87 5.221382 CCCGAGGAGGACTAATAAATTCGAA 60.221 44.000 0.00 0.00 45.00 3.71
87 88 5.690857 CCGAGGAGGACTAATAAATTCGAAC 59.309 44.000 0.00 0.00 45.00 3.95
88 89 6.270815 CGAGGAGGACTAATAAATTCGAACA 58.729 40.000 0.00 0.00 0.00 3.18
89 90 6.755141 CGAGGAGGACTAATAAATTCGAACAA 59.245 38.462 0.00 0.00 0.00 2.83
90 91 7.277098 CGAGGAGGACTAATAAATTCGAACAAA 59.723 37.037 0.00 0.00 0.00 2.83
91 92 8.494016 AGGAGGACTAATAAATTCGAACAAAG 57.506 34.615 0.00 0.00 0.00 2.77
92 93 7.553044 AGGAGGACTAATAAATTCGAACAAAGG 59.447 37.037 0.00 0.00 0.00 3.11
93 94 7.551617 GGAGGACTAATAAATTCGAACAAAGGA 59.448 37.037 0.00 0.00 0.00 3.36
94 95 8.857694 AGGACTAATAAATTCGAACAAAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
95 96 9.292195 AGGACTAATAAATTCGAACAAAGGAAA 57.708 29.630 0.00 0.00 0.00 3.13
105 106 8.746052 ATTCGAACAAAGGAAATACCATATCA 57.254 30.769 0.00 0.00 42.04 2.15
106 107 8.568676 TTCGAACAAAGGAAATACCATATCAA 57.431 30.769 0.00 0.00 42.04 2.57
107 108 8.208718 TCGAACAAAGGAAATACCATATCAAG 57.791 34.615 0.00 0.00 42.04 3.02
108 109 6.912591 CGAACAAAGGAAATACCATATCAAGC 59.087 38.462 0.00 0.00 42.04 4.01
109 110 7.415095 CGAACAAAGGAAATACCATATCAAGCA 60.415 37.037 0.00 0.00 42.04 3.91
110 111 7.100458 ACAAAGGAAATACCATATCAAGCAC 57.900 36.000 0.00 0.00 42.04 4.40
111 112 6.663093 ACAAAGGAAATACCATATCAAGCACA 59.337 34.615 0.00 0.00 42.04 4.57
112 113 6.699575 AAGGAAATACCATATCAAGCACAC 57.300 37.500 0.00 0.00 42.04 3.82
113 114 6.006275 AGGAAATACCATATCAAGCACACT 57.994 37.500 0.00 0.00 42.04 3.55
114 115 5.824624 AGGAAATACCATATCAAGCACACTG 59.175 40.000 0.00 0.00 42.04 3.66
115 116 5.590259 GGAAATACCATATCAAGCACACTGT 59.410 40.000 0.00 0.00 38.79 3.55
116 117 6.441093 AAATACCATATCAAGCACACTGTG 57.559 37.500 6.19 6.19 36.51 3.66
127 128 2.830772 CACACTGTGCCGGAATTATG 57.169 50.000 5.05 0.00 0.00 1.90
128 129 2.355197 CACACTGTGCCGGAATTATGA 58.645 47.619 5.05 0.00 0.00 2.15
129 130 2.095853 CACACTGTGCCGGAATTATGAC 59.904 50.000 5.05 0.00 0.00 3.06
130 131 2.290008 ACACTGTGCCGGAATTATGACA 60.290 45.455 5.05 0.00 0.00 3.58
131 132 2.746904 CACTGTGCCGGAATTATGACAA 59.253 45.455 5.05 0.00 0.00 3.18
132 133 2.747446 ACTGTGCCGGAATTATGACAAC 59.253 45.455 5.05 0.00 0.00 3.32
133 134 3.009723 CTGTGCCGGAATTATGACAACT 58.990 45.455 5.05 0.00 0.00 3.16
134 135 4.188462 CTGTGCCGGAATTATGACAACTA 58.812 43.478 5.05 0.00 0.00 2.24
135 136 4.188462 TGTGCCGGAATTATGACAACTAG 58.812 43.478 5.05 0.00 0.00 2.57
136 137 4.189231 GTGCCGGAATTATGACAACTAGT 58.811 43.478 5.05 0.00 0.00 2.57
146 147 2.489938 GACAACTAGTCATGGGCCAA 57.510 50.000 11.89 0.00 46.77 4.52
147 148 2.084546 GACAACTAGTCATGGGCCAAC 58.915 52.381 11.89 4.98 46.77 3.77
148 149 1.423541 ACAACTAGTCATGGGCCAACA 59.576 47.619 11.89 0.00 0.00 3.33
149 150 1.812571 CAACTAGTCATGGGCCAACAC 59.187 52.381 11.89 10.51 0.00 3.32
150 151 1.362224 ACTAGTCATGGGCCAACACT 58.638 50.000 20.87 20.87 0.00 3.55
151 152 1.705186 ACTAGTCATGGGCCAACACTT 59.295 47.619 21.93 6.37 0.00 3.16
152 153 2.086869 CTAGTCATGGGCCAACACTTG 58.913 52.381 21.93 17.15 0.00 3.16
153 154 0.185901 AGTCATGGGCCAACACTTGT 59.814 50.000 11.89 0.00 0.00 3.16
154 155 0.314935 GTCATGGGCCAACACTTGTG 59.685 55.000 11.89 1.69 0.00 3.33
155 156 0.827089 TCATGGGCCAACACTTGTGG 60.827 55.000 11.89 0.00 0.00 4.17
156 157 0.827089 CATGGGCCAACACTTGTGGA 60.827 55.000 11.89 0.00 0.00 4.02
157 158 0.114954 ATGGGCCAACACTTGTGGAT 59.885 50.000 11.89 0.00 0.00 3.41
158 159 0.539438 TGGGCCAACACTTGTGGATC 60.539 55.000 2.13 0.00 0.00 3.36
159 160 0.251341 GGGCCAACACTTGTGGATCT 60.251 55.000 4.39 0.00 0.00 2.75
160 161 1.168714 GGCCAACACTTGTGGATCTC 58.831 55.000 0.00 0.00 0.00 2.75
161 162 1.545428 GGCCAACACTTGTGGATCTCA 60.545 52.381 0.00 0.00 0.00 3.27
162 163 1.537202 GCCAACACTTGTGGATCTCAC 59.463 52.381 5.72 7.22 46.23 3.51
173 174 4.320608 GTGGATCTCACAAGAGGATCTC 57.679 50.000 8.84 0.00 44.13 2.75
174 175 3.069443 GTGGATCTCACAAGAGGATCTCC 59.931 52.174 8.84 0.00 44.13 3.71
175 176 6.013971 GTGGATCTCACAAGAGGATCTCCC 62.014 54.167 8.84 0.00 44.13 4.30
183 184 4.480480 AGGATCTCCCTCGCCAAA 57.520 55.556 0.00 0.00 43.31 3.28
184 185 2.216148 AGGATCTCCCTCGCCAAAG 58.784 57.895 0.00 0.00 43.31 2.77
185 186 1.147153 GGATCTCCCTCGCCAAAGG 59.853 63.158 0.00 0.00 36.08 3.11
186 187 1.627297 GGATCTCCCTCGCCAAAGGT 61.627 60.000 0.00 0.00 34.34 3.50
187 188 0.179070 GATCTCCCTCGCCAAAGGTC 60.179 60.000 0.00 0.00 34.34 3.85
188 189 0.909610 ATCTCCCTCGCCAAAGGTCA 60.910 55.000 0.00 0.00 34.34 4.02
189 190 0.909610 TCTCCCTCGCCAAAGGTCAT 60.910 55.000 0.00 0.00 34.34 3.06
190 191 0.830648 CTCCCTCGCCAAAGGTCATA 59.169 55.000 0.00 0.00 34.34 2.15
191 192 0.830648 TCCCTCGCCAAAGGTCATAG 59.169 55.000 0.00 0.00 34.34 2.23
192 193 0.541863 CCCTCGCCAAAGGTCATAGT 59.458 55.000 0.00 0.00 34.34 2.12
193 194 1.065418 CCCTCGCCAAAGGTCATAGTT 60.065 52.381 0.00 0.00 34.34 2.24
194 195 2.280628 CCTCGCCAAAGGTCATAGTTC 58.719 52.381 0.00 0.00 0.00 3.01
195 196 2.354704 CCTCGCCAAAGGTCATAGTTCA 60.355 50.000 0.00 0.00 0.00 3.18
196 197 3.334691 CTCGCCAAAGGTCATAGTTCAA 58.665 45.455 0.00 0.00 0.00 2.69
197 198 3.334691 TCGCCAAAGGTCATAGTTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
198 199 3.074412 CGCCAAAGGTCATAGTTCAAGT 58.926 45.455 0.00 0.00 0.00 3.16
199 200 3.502211 CGCCAAAGGTCATAGTTCAAGTT 59.498 43.478 0.00 0.00 0.00 2.66
200 201 4.613622 CGCCAAAGGTCATAGTTCAAGTTG 60.614 45.833 0.00 0.00 0.00 3.16
201 202 4.278419 GCCAAAGGTCATAGTTCAAGTTGT 59.722 41.667 2.11 0.00 0.00 3.32
202 203 5.472137 GCCAAAGGTCATAGTTCAAGTTGTA 59.528 40.000 2.11 0.00 0.00 2.41
203 204 6.348540 GCCAAAGGTCATAGTTCAAGTTGTAG 60.349 42.308 2.11 0.00 0.00 2.74
204 205 6.149474 CCAAAGGTCATAGTTCAAGTTGTAGG 59.851 42.308 2.11 0.00 0.00 3.18
205 206 6.681729 AAGGTCATAGTTCAAGTTGTAGGA 57.318 37.500 2.11 0.00 0.00 2.94
206 207 6.681729 AGGTCATAGTTCAAGTTGTAGGAA 57.318 37.500 2.11 0.00 0.00 3.36
207 208 7.259088 AGGTCATAGTTCAAGTTGTAGGAAT 57.741 36.000 2.11 0.00 0.00 3.01
208 209 8.375493 AGGTCATAGTTCAAGTTGTAGGAATA 57.625 34.615 2.11 0.00 0.00 1.75
209 210 8.822805 AGGTCATAGTTCAAGTTGTAGGAATAA 58.177 33.333 2.11 0.00 0.00 1.40
210 211 8.880750 GGTCATAGTTCAAGTTGTAGGAATAAC 58.119 37.037 2.11 0.00 0.00 1.89
211 212 9.654663 GTCATAGTTCAAGTTGTAGGAATAACT 57.345 33.333 2.11 6.00 38.56 2.24
228 229 9.915629 AGGAATAACTATATAAGCGAAAGTGAG 57.084 33.333 0.00 0.00 0.00 3.51
229 230 8.648968 GGAATAACTATATAAGCGAAAGTGAGC 58.351 37.037 0.00 0.00 0.00 4.26
230 231 9.413048 GAATAACTATATAAGCGAAAGTGAGCT 57.587 33.333 0.00 0.00 46.97 4.09
237 238 2.833794 AGCGAAAGTGAGCTTGTTACA 58.166 42.857 0.00 0.00 41.52 2.41
238 239 3.202906 AGCGAAAGTGAGCTTGTTACAA 58.797 40.909 0.00 0.00 41.52 2.41
239 240 3.625764 AGCGAAAGTGAGCTTGTTACAAA 59.374 39.130 0.00 0.00 41.52 2.83
240 241 4.275936 AGCGAAAGTGAGCTTGTTACAAAT 59.724 37.500 0.00 0.00 41.52 2.32
241 242 4.613031 GCGAAAGTGAGCTTGTTACAAATC 59.387 41.667 0.00 1.44 34.71 2.17
242 243 5.560953 GCGAAAGTGAGCTTGTTACAAATCT 60.561 40.000 0.00 0.00 34.71 2.40
243 244 6.074005 CGAAAGTGAGCTTGTTACAAATCTC 58.926 40.000 15.45 15.45 34.71 2.75
244 245 6.292865 CGAAAGTGAGCTTGTTACAAATCTCA 60.293 38.462 18.90 18.90 34.71 3.27
245 246 7.516198 AAAGTGAGCTTGTTACAAATCTCAT 57.484 32.000 22.84 12.05 35.44 2.90
246 247 8.621532 AAAGTGAGCTTGTTACAAATCTCATA 57.378 30.769 22.84 7.52 35.44 2.15
247 248 8.798859 AAGTGAGCTTGTTACAAATCTCATAT 57.201 30.769 22.84 15.91 35.44 1.78
248 249 8.430801 AGTGAGCTTGTTACAAATCTCATATC 57.569 34.615 22.84 14.91 35.44 1.63
249 250 7.497249 AGTGAGCTTGTTACAAATCTCATATCC 59.503 37.037 22.84 14.68 35.44 2.59
250 251 7.280876 GTGAGCTTGTTACAAATCTCATATCCA 59.719 37.037 22.84 6.45 35.44 3.41
251 252 7.994911 TGAGCTTGTTACAAATCTCATATCCAT 59.005 33.333 18.90 0.00 29.68 3.41
252 253 8.757982 AGCTTGTTACAAATCTCATATCCATT 57.242 30.769 0.00 0.00 0.00 3.16
253 254 9.851686 AGCTTGTTACAAATCTCATATCCATTA 57.148 29.630 0.00 0.00 0.00 1.90
261 262 9.730705 ACAAATCTCATATCCATTATCATCGTT 57.269 29.630 0.00 0.00 0.00 3.85
283 284 9.059260 TCGTTACAATTTCTATATAAAAGGGGC 57.941 33.333 0.00 0.00 0.00 5.80
284 285 8.294577 CGTTACAATTTCTATATAAAAGGGGCC 58.705 37.037 0.00 0.00 0.00 5.80
285 286 8.582437 GTTACAATTTCTATATAAAAGGGGCCC 58.418 37.037 17.12 17.12 0.00 5.80
286 287 6.082031 ACAATTTCTATATAAAAGGGGCCCC 58.918 40.000 35.90 35.90 0.00 5.80
287 288 4.376225 TTTCTATATAAAAGGGGCCCCG 57.624 45.455 35.78 17.72 41.95 5.73
288 289 3.278987 TCTATATAAAAGGGGCCCCGA 57.721 47.619 35.78 21.92 41.95 5.14
289 290 3.178865 TCTATATAAAAGGGGCCCCGAG 58.821 50.000 35.78 20.87 41.95 4.63
290 291 1.829138 ATATAAAAGGGGCCCCGAGT 58.171 50.000 35.78 25.03 41.95 4.18
291 292 1.598869 TATAAAAGGGGCCCCGAGTT 58.401 50.000 35.78 29.22 41.95 3.01
292 293 0.708209 ATAAAAGGGGCCCCGAGTTT 59.292 50.000 35.78 32.79 41.95 2.66
293 294 0.483770 TAAAAGGGGCCCCGAGTTTT 59.516 50.000 35.78 33.09 41.95 2.43
294 295 0.483770 AAAAGGGGCCCCGAGTTTTA 59.516 50.000 35.78 0.00 41.95 1.52
295 296 0.039180 AAAGGGGCCCCGAGTTTTAG 59.961 55.000 35.78 0.00 41.95 1.85
296 297 1.138228 AAGGGGCCCCGAGTTTTAGT 61.138 55.000 35.78 11.96 41.95 2.24
297 298 1.138228 AGGGGCCCCGAGTTTTAGTT 61.138 55.000 35.78 11.08 41.95 2.24
298 299 0.251474 GGGGCCCCGAGTTTTAGTTT 60.251 55.000 29.50 0.00 0.00 2.66
299 300 1.171308 GGGCCCCGAGTTTTAGTTTC 58.829 55.000 12.23 0.00 0.00 2.78
300 301 0.800631 GGCCCCGAGTTTTAGTTTCG 59.199 55.000 0.00 0.00 0.00 3.46
301 302 0.167470 GCCCCGAGTTTTAGTTTCGC 59.833 55.000 0.00 0.00 33.25 4.70
302 303 0.800631 CCCCGAGTTTTAGTTTCGCC 59.199 55.000 0.00 0.00 33.25 5.54
303 304 0.800631 CCCGAGTTTTAGTTTCGCCC 59.199 55.000 0.00 0.00 33.25 6.13
304 305 0.800631 CCGAGTTTTAGTTTCGCCCC 59.199 55.000 0.00 0.00 33.25 5.80
305 306 0.441145 CGAGTTTTAGTTTCGCCCCG 59.559 55.000 0.00 0.00 0.00 5.73
306 307 0.800631 GAGTTTTAGTTTCGCCCCGG 59.199 55.000 0.00 0.00 0.00 5.73
307 308 0.607217 AGTTTTAGTTTCGCCCCGGG 60.607 55.000 15.80 15.80 0.00 5.73
308 309 1.972752 TTTTAGTTTCGCCCCGGGC 60.973 57.895 19.64 19.64 46.75 6.13
319 320 4.074408 CCCGGGCCCCCAAAATCT 62.074 66.667 18.66 0.00 35.37 2.40
320 321 2.442087 CCGGGCCCCCAAAATCTC 60.442 66.667 18.66 0.00 35.37 2.75
321 322 2.358619 CGGGCCCCCAAAATCTCA 59.641 61.111 18.66 0.00 35.37 3.27
322 323 1.304879 CGGGCCCCCAAAATCTCAA 60.305 57.895 18.66 0.00 35.37 3.02
323 324 1.322538 CGGGCCCCCAAAATCTCAAG 61.323 60.000 18.66 0.00 35.37 3.02
324 325 0.041090 GGGCCCCCAAAATCTCAAGA 59.959 55.000 12.23 0.00 35.81 3.02
325 326 1.186200 GGCCCCCAAAATCTCAAGAC 58.814 55.000 0.00 0.00 0.00 3.01
326 327 1.186200 GCCCCCAAAATCTCAAGACC 58.814 55.000 0.00 0.00 0.00 3.85
327 328 1.463674 CCCCCAAAATCTCAAGACCG 58.536 55.000 0.00 0.00 0.00 4.79
328 329 1.463674 CCCCAAAATCTCAAGACCGG 58.536 55.000 0.00 0.00 0.00 5.28
329 330 0.811281 CCCAAAATCTCAAGACCGGC 59.189 55.000 0.00 0.00 0.00 6.13
330 331 0.811281 CCAAAATCTCAAGACCGGCC 59.189 55.000 0.00 0.00 0.00 6.13
331 332 0.811281 CAAAATCTCAAGACCGGCCC 59.189 55.000 0.00 0.00 0.00 5.80
332 333 0.698818 AAAATCTCAAGACCGGCCCT 59.301 50.000 0.00 0.00 0.00 5.19
333 334 0.035056 AAATCTCAAGACCGGCCCTG 60.035 55.000 0.00 0.00 0.00 4.45
334 335 1.201429 AATCTCAAGACCGGCCCTGT 61.201 55.000 0.00 0.00 0.00 4.00
335 336 1.903877 ATCTCAAGACCGGCCCTGTG 61.904 60.000 0.00 0.00 0.00 3.66
336 337 2.847234 TCAAGACCGGCCCTGTGT 60.847 61.111 0.00 0.00 0.00 3.72
337 338 1.534476 TCAAGACCGGCCCTGTGTA 60.534 57.895 0.00 0.00 0.00 2.90
338 339 1.122632 TCAAGACCGGCCCTGTGTAA 61.123 55.000 0.00 0.00 0.00 2.41
379 380 9.814899 TTTGGTTATGGATTATATGTTTGCTTG 57.185 29.630 0.00 0.00 0.00 4.01
380 381 8.532186 TGGTTATGGATTATATGTTTGCTTGT 57.468 30.769 0.00 0.00 0.00 3.16
381 382 8.412456 TGGTTATGGATTATATGTTTGCTTGTG 58.588 33.333 0.00 0.00 0.00 3.33
382 383 7.382218 GGTTATGGATTATATGTTTGCTTGTGC 59.618 37.037 0.00 0.00 40.20 4.57
412 413 7.928908 TTGTCTGTGAAATAATGCAAAGTTC 57.071 32.000 0.00 0.00 0.00 3.01
421 422 7.812191 TGAAATAATGCAAAGTTCGTGCTATTT 59.188 29.630 0.00 4.48 42.69 1.40
439 441 1.120530 TTGTTAAAAAGGGCGGCCAA 58.879 45.000 31.59 12.55 0.00 4.52
465 467 1.809619 CGCCGGCATATATGGGTCG 60.810 63.158 28.98 11.10 0.00 4.79
466 468 1.594833 GCCGGCATATATGGGTCGA 59.405 57.895 24.80 0.00 0.00 4.20
533 536 3.666253 GGACGGCCAACCCAAACG 61.666 66.667 0.00 0.00 0.00 3.60
534 537 2.592287 GACGGCCAACCCAAACGA 60.592 61.111 2.24 0.00 0.00 3.85
536 539 1.726533 GACGGCCAACCCAAACGAAA 61.727 55.000 2.24 0.00 0.00 3.46
581 594 0.438830 CGCGTTGGAGTTGCTCTTAC 59.561 55.000 0.00 0.00 0.00 2.34
584 597 2.548480 GCGTTGGAGTTGCTCTTACTTT 59.452 45.455 0.00 0.00 0.00 2.66
599 612 8.598041 TGCTCTTACTTTCCTCTTTAATTCTCT 58.402 33.333 0.00 0.00 0.00 3.10
629 642 5.965486 AGGGTCCTTTATTTCTCTTTTGGT 58.035 37.500 0.00 0.00 0.00 3.67
630 643 5.775195 AGGGTCCTTTATTTCTCTTTTGGTG 59.225 40.000 0.00 0.00 0.00 4.17
631 644 5.773176 GGGTCCTTTATTTCTCTTTTGGTGA 59.227 40.000 0.00 0.00 0.00 4.02
632 645 6.294564 GGGTCCTTTATTTCTCTTTTGGTGAC 60.295 42.308 0.00 0.00 0.00 3.67
673 689 6.377146 GGAGTAGATTTTTGCTTGGGATGTTA 59.623 38.462 0.00 0.00 0.00 2.41
732 753 1.933853 CGACCATTTCGTTCCATCTCC 59.066 52.381 0.00 0.00 43.24 3.71
733 754 2.289565 GACCATTTCGTTCCATCTCCC 58.710 52.381 0.00 0.00 0.00 4.30
734 755 1.064685 ACCATTTCGTTCCATCTCCCC 60.065 52.381 0.00 0.00 0.00 4.81
735 756 1.064758 CCATTTCGTTCCATCTCCCCA 60.065 52.381 0.00 0.00 0.00 4.96
738 759 1.285280 TTCGTTCCATCTCCCCACAT 58.715 50.000 0.00 0.00 0.00 3.21
739 760 0.541392 TCGTTCCATCTCCCCACATG 59.459 55.000 0.00 0.00 0.00 3.21
740 761 0.464373 CGTTCCATCTCCCCACATGG 60.464 60.000 0.00 0.00 41.04 3.66
741 762 0.918983 GTTCCATCTCCCCACATGGA 59.081 55.000 0.00 0.00 45.74 3.41
951 1038 1.543941 CGCTCGCTCGCCTTCTATTG 61.544 60.000 0.00 0.00 0.00 1.90
1517 2983 0.666577 CCTGAGTTCGTCGGTGGAAC 60.667 60.000 0.00 6.18 43.15 3.62
1923 3499 5.395325 CGCAAGTCTATCAAACATACTGG 57.605 43.478 0.00 0.00 0.00 4.00
1925 3501 5.233050 CGCAAGTCTATCAAACATACTGGAG 59.767 44.000 0.00 0.00 0.00 3.86
1927 3503 6.036517 GCAAGTCTATCAAACATACTGGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
1928 3504 5.665459 AGTCTATCAAACATACTGGAGTGC 58.335 41.667 0.00 0.00 0.00 4.40
1930 3506 5.751028 GTCTATCAAACATACTGGAGTGCTC 59.249 44.000 0.00 0.00 0.00 4.26
1942 3525 3.865446 TGGAGTGCTCAACATACTGATG 58.135 45.455 1.41 0.00 39.16 3.07
1943 3526 2.611292 GGAGTGCTCAACATACTGATGC 59.389 50.000 1.41 0.00 36.43 3.91
2007 3613 2.345991 GCAGGCTTCCACACCGTA 59.654 61.111 0.00 0.00 0.00 4.02
2064 3675 4.876107 CCTAAATAACGCACCAGAACATCT 59.124 41.667 0.00 0.00 0.00 2.90
2073 3684 2.166459 CACCAGAACATCTAGGAAGCGA 59.834 50.000 0.00 0.00 0.00 4.93
2076 3687 3.068732 CCAGAACATCTAGGAAGCGATGA 59.931 47.826 6.29 0.00 39.43 2.92
2086 3697 1.999735 GGAAGCGATGACAACGATTGA 59.000 47.619 13.44 0.00 39.36 2.57
2159 3774 3.743521 CTTGATGTTCTGTTCCAGTGGA 58.256 45.455 8.12 8.12 32.61 4.02
2277 3914 5.334182 GCCAGTTTTAGCTAGTGTGTTCTTC 60.334 44.000 0.00 0.00 0.00 2.87
2307 3944 7.113544 GCTTCGATTTTGTAGCTTATAAATGGC 59.886 37.037 0.00 0.00 30.50 4.40
2316 3953 3.149981 GCTTATAAATGGCACTCCCTCC 58.850 50.000 0.00 0.00 0.00 4.30
2320 3957 0.112412 AAATGGCACTCCCTCCGTTT 59.888 50.000 0.00 0.00 36.90 3.60
2321 3958 0.112412 AATGGCACTCCCTCCGTTTT 59.888 50.000 0.00 0.00 0.00 2.43
2322 3959 0.609131 ATGGCACTCCCTCCGTTTTG 60.609 55.000 0.00 0.00 0.00 2.44
2325 3962 1.439679 GCACTCCCTCCGTTTTGTAG 58.560 55.000 0.00 0.00 0.00 2.74
2326 3963 1.439679 CACTCCCTCCGTTTTGTAGC 58.560 55.000 0.00 0.00 0.00 3.58
2331 3975 1.542547 CCCTCCGTTTTGTAGCACTGT 60.543 52.381 0.00 0.00 0.00 3.55
2338 3982 5.354792 TCCGTTTTGTAGCACTGTTTTAGTT 59.645 36.000 0.00 0.00 37.60 2.24
2342 3986 7.271653 CGTTTTGTAGCACTGTTTTAGTTCAAA 59.728 33.333 0.00 0.00 37.60 2.69
2347 3991 8.462811 TGTAGCACTGTTTTAGTTCAAATTTGA 58.537 29.630 16.91 16.91 37.60 2.69
2362 4006 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
2369 4013 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2381 4025 2.564062 ACGAGTAATTTGGAACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2385 4029 4.324267 AGTAATTTGGAACGGAGGAAGTG 58.676 43.478 0.00 0.00 0.00 3.16
2406 4050 6.119536 AGTGGTACTGTGTCAAAATTCTTCA 58.880 36.000 0.00 0.00 0.00 3.02
2476 4120 3.916172 TGTAATACGCTCGTTCAGTTCAC 59.084 43.478 0.00 0.00 0.00 3.18
2490 4134 2.472861 CAGTTCACTTCTGTGTAGCACG 59.527 50.000 0.00 0.00 44.14 5.34
2517 4163 4.098914 ACAGTGCTTTCCTGATGGTAAA 57.901 40.909 0.00 0.00 34.04 2.01
2561 4208 2.555199 CCTGCCTCTGTGCTGTATAAC 58.445 52.381 0.00 0.00 0.00 1.89
2569 4216 5.882557 CCTCTGTGCTGTATAACCTCAAAAT 59.117 40.000 0.00 0.00 0.00 1.82
2576 4223 9.855021 GTGCTGTATAACCTCAAAATTACAAAT 57.145 29.630 0.00 0.00 0.00 2.32
2577 4224 9.853555 TGCTGTATAACCTCAAAATTACAAATG 57.146 29.630 0.00 0.00 0.00 2.32
2585 4232 8.986477 ACCTCAAAATTACAAATGCAGTTATC 57.014 30.769 0.00 0.00 0.00 1.75
2586 4233 8.806146 ACCTCAAAATTACAAATGCAGTTATCT 58.194 29.630 0.00 0.00 0.00 1.98
2621 4268 9.041354 ACCAATATAAAAAGACTTAAATGGGCA 57.959 29.630 0.00 0.00 0.00 5.36
2622 4269 9.533253 CCAATATAAAAAGACTTAAATGGGCAG 57.467 33.333 0.00 0.00 0.00 4.85
2626 4273 8.829373 ATAAAAAGACTTAAATGGGCAGATCT 57.171 30.769 0.00 0.00 0.00 2.75
2627 4274 9.920946 ATAAAAAGACTTAAATGGGCAGATCTA 57.079 29.630 0.00 0.00 0.00 1.98
2628 4275 8.650143 AAAAAGACTTAAATGGGCAGATCTAA 57.350 30.769 0.00 0.00 0.00 2.10
2629 4276 8.650143 AAAAGACTTAAATGGGCAGATCTAAA 57.350 30.769 0.00 0.00 0.00 1.85
2630 4277 7.631717 AAGACTTAAATGGGCAGATCTAAAC 57.368 36.000 0.00 0.00 0.00 2.01
2631 4278 6.122964 AGACTTAAATGGGCAGATCTAAACC 58.877 40.000 0.00 0.00 0.00 3.27
2632 4279 5.826643 ACTTAAATGGGCAGATCTAAACCA 58.173 37.500 12.85 12.85 35.39 3.67
2633 4280 6.435164 ACTTAAATGGGCAGATCTAAACCAT 58.565 36.000 15.55 15.55 43.39 3.55
2634 4281 6.547510 ACTTAAATGGGCAGATCTAAACCATC 59.452 38.462 19.48 2.99 40.84 3.51
2635 4282 4.803329 AATGGGCAGATCTAAACCATCT 57.197 40.909 19.48 10.90 40.84 2.90
2636 4283 3.845781 TGGGCAGATCTAAACCATCTC 57.154 47.619 7.83 0.00 0.00 2.75
2637 4284 2.103094 TGGGCAGATCTAAACCATCTCG 59.897 50.000 7.83 0.00 0.00 4.04
2638 4285 2.365617 GGGCAGATCTAAACCATCTCGA 59.634 50.000 0.00 0.00 0.00 4.04
2639 4286 3.385577 GGCAGATCTAAACCATCTCGAC 58.614 50.000 0.00 0.00 0.00 4.20
2640 4287 3.385577 GCAGATCTAAACCATCTCGACC 58.614 50.000 0.00 0.00 0.00 4.79
2641 4288 3.633235 CAGATCTAAACCATCTCGACCG 58.367 50.000 0.00 0.00 0.00 4.79
2642 4289 3.066900 CAGATCTAAACCATCTCGACCGT 59.933 47.826 0.00 0.00 0.00 4.83
2643 4290 3.315749 AGATCTAAACCATCTCGACCGTC 59.684 47.826 0.00 0.00 0.00 4.79
2644 4291 2.439409 TCTAAACCATCTCGACCGTCA 58.561 47.619 0.00 0.00 0.00 4.35
2645 4292 2.821378 TCTAAACCATCTCGACCGTCAA 59.179 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.574516 AAGTCTATTTTGACCTAACATTTGACT 57.425 29.630 0.00 0.00 37.66 3.41
38 39 9.070179 GGGTTTTAAGTCTATTTTGACCTAACA 57.930 33.333 0.00 0.00 37.66 2.41
39 40 8.232513 CGGGTTTTAAGTCTATTTTGACCTAAC 58.767 37.037 0.00 0.00 37.66 2.34
40 41 8.156165 TCGGGTTTTAAGTCTATTTTGACCTAA 58.844 33.333 0.00 0.00 37.66 2.69
41 42 7.678837 TCGGGTTTTAAGTCTATTTTGACCTA 58.321 34.615 0.00 0.00 37.66 3.08
42 43 6.536447 TCGGGTTTTAAGTCTATTTTGACCT 58.464 36.000 0.00 0.00 37.66 3.85
43 44 6.128090 CCTCGGGTTTTAAGTCTATTTTGACC 60.128 42.308 0.00 0.00 37.66 4.02
44 45 6.652062 TCCTCGGGTTTTAAGTCTATTTTGAC 59.348 38.462 0.00 0.00 37.23 3.18
45 46 6.771573 TCCTCGGGTTTTAAGTCTATTTTGA 58.228 36.000 0.00 0.00 0.00 2.69
46 47 6.093633 CCTCCTCGGGTTTTAAGTCTATTTTG 59.906 42.308 0.00 0.00 0.00 2.44
47 48 6.013119 TCCTCCTCGGGTTTTAAGTCTATTTT 60.013 38.462 0.00 0.00 0.00 1.82
48 49 5.486419 TCCTCCTCGGGTTTTAAGTCTATTT 59.514 40.000 0.00 0.00 0.00 1.40
49 50 5.028131 TCCTCCTCGGGTTTTAAGTCTATT 58.972 41.667 0.00 0.00 0.00 1.73
50 51 4.405036 GTCCTCCTCGGGTTTTAAGTCTAT 59.595 45.833 0.00 0.00 0.00 1.98
51 52 3.766051 GTCCTCCTCGGGTTTTAAGTCTA 59.234 47.826 0.00 0.00 0.00 2.59
52 53 2.566279 GTCCTCCTCGGGTTTTAAGTCT 59.434 50.000 0.00 0.00 0.00 3.24
53 54 2.566279 AGTCCTCCTCGGGTTTTAAGTC 59.434 50.000 0.00 0.00 0.00 3.01
54 55 2.617658 AGTCCTCCTCGGGTTTTAAGT 58.382 47.619 0.00 0.00 0.00 2.24
55 56 4.813750 TTAGTCCTCCTCGGGTTTTAAG 57.186 45.455 0.00 0.00 0.00 1.85
56 57 6.872585 TTATTAGTCCTCCTCGGGTTTTAA 57.127 37.500 0.00 0.00 0.00 1.52
57 58 6.872585 TTTATTAGTCCTCCTCGGGTTTTA 57.127 37.500 0.00 0.00 0.00 1.52
58 59 5.767277 TTTATTAGTCCTCCTCGGGTTTT 57.233 39.130 0.00 0.00 0.00 2.43
59 60 5.970501 ATTTATTAGTCCTCCTCGGGTTT 57.029 39.130 0.00 0.00 0.00 3.27
60 61 5.452917 CGAATTTATTAGTCCTCCTCGGGTT 60.453 44.000 0.00 0.00 0.00 4.11
61 62 4.038883 CGAATTTATTAGTCCTCCTCGGGT 59.961 45.833 0.00 0.00 0.00 5.28
62 63 4.280174 TCGAATTTATTAGTCCTCCTCGGG 59.720 45.833 0.00 0.00 0.00 5.14
63 64 5.449107 TCGAATTTATTAGTCCTCCTCGG 57.551 43.478 0.00 0.00 0.00 4.63
64 65 6.270815 TGTTCGAATTTATTAGTCCTCCTCG 58.729 40.000 0.00 0.00 0.00 4.63
65 66 8.488651 TTTGTTCGAATTTATTAGTCCTCCTC 57.511 34.615 0.00 0.00 0.00 3.71
66 67 7.553044 CCTTTGTTCGAATTTATTAGTCCTCCT 59.447 37.037 0.00 0.00 0.00 3.69
67 68 7.551617 TCCTTTGTTCGAATTTATTAGTCCTCC 59.448 37.037 0.00 0.00 0.00 4.30
68 69 8.488651 TCCTTTGTTCGAATTTATTAGTCCTC 57.511 34.615 0.00 0.00 0.00 3.71
69 70 8.857694 TTCCTTTGTTCGAATTTATTAGTCCT 57.142 30.769 0.00 0.00 0.00 3.85
79 80 9.184523 TGATATGGTATTTCCTTTGTTCGAATT 57.815 29.630 0.00 0.00 37.07 2.17
80 81 8.746052 TGATATGGTATTTCCTTTGTTCGAAT 57.254 30.769 0.00 0.00 37.07 3.34
81 82 8.568676 TTGATATGGTATTTCCTTTGTTCGAA 57.431 30.769 0.00 0.00 37.07 3.71
82 83 7.201696 GCTTGATATGGTATTTCCTTTGTTCGA 60.202 37.037 0.00 0.00 37.07 3.71
83 84 6.912591 GCTTGATATGGTATTTCCTTTGTTCG 59.087 38.462 0.00 0.00 37.07 3.95
84 85 7.702348 GTGCTTGATATGGTATTTCCTTTGTTC 59.298 37.037 0.00 0.00 37.07 3.18
85 86 7.178274 TGTGCTTGATATGGTATTTCCTTTGTT 59.822 33.333 0.00 0.00 37.07 2.83
86 87 6.663093 TGTGCTTGATATGGTATTTCCTTTGT 59.337 34.615 0.00 0.00 37.07 2.83
87 88 6.974622 GTGTGCTTGATATGGTATTTCCTTTG 59.025 38.462 0.00 0.00 37.07 2.77
88 89 6.891908 AGTGTGCTTGATATGGTATTTCCTTT 59.108 34.615 0.00 0.00 37.07 3.11
89 90 6.319658 CAGTGTGCTTGATATGGTATTTCCTT 59.680 38.462 0.00 0.00 37.07 3.36
90 91 5.824624 CAGTGTGCTTGATATGGTATTTCCT 59.175 40.000 0.00 0.00 37.07 3.36
91 92 5.590259 ACAGTGTGCTTGATATGGTATTTCC 59.410 40.000 0.00 0.00 0.00 3.13
92 93 6.489675 CACAGTGTGCTTGATATGGTATTTC 58.510 40.000 10.97 0.00 0.00 2.17
93 94 6.441093 CACAGTGTGCTTGATATGGTATTT 57.559 37.500 10.97 0.00 0.00 1.40
108 109 2.095853 GTCATAATTCCGGCACAGTGTG 59.904 50.000 19.27 19.27 36.51 3.82
109 110 2.290008 TGTCATAATTCCGGCACAGTGT 60.290 45.455 0.00 0.00 0.00 3.55
110 111 2.355197 TGTCATAATTCCGGCACAGTG 58.645 47.619 0.00 0.00 0.00 3.66
111 112 2.747446 GTTGTCATAATTCCGGCACAGT 59.253 45.455 0.00 0.00 0.00 3.55
112 113 3.009723 AGTTGTCATAATTCCGGCACAG 58.990 45.455 0.00 0.00 0.00 3.66
113 114 3.066291 AGTTGTCATAATTCCGGCACA 57.934 42.857 0.00 0.00 0.00 4.57
114 115 4.189231 ACTAGTTGTCATAATTCCGGCAC 58.811 43.478 0.00 0.00 0.00 5.01
115 116 4.439057 GACTAGTTGTCATAATTCCGGCA 58.561 43.478 0.00 0.00 44.73 5.69
127 128 2.084546 GTTGGCCCATGACTAGTTGTC 58.915 52.381 0.00 0.00 45.54 3.18
128 129 1.423541 TGTTGGCCCATGACTAGTTGT 59.576 47.619 0.00 0.00 0.00 3.32
129 130 1.812571 GTGTTGGCCCATGACTAGTTG 59.187 52.381 0.00 0.00 0.00 3.16
130 131 1.705186 AGTGTTGGCCCATGACTAGTT 59.295 47.619 0.00 0.00 0.00 2.24
131 132 1.362224 AGTGTTGGCCCATGACTAGT 58.638 50.000 0.00 0.00 0.00 2.57
132 133 2.086869 CAAGTGTTGGCCCATGACTAG 58.913 52.381 0.00 0.00 0.00 2.57
133 134 1.423541 ACAAGTGTTGGCCCATGACTA 59.576 47.619 0.00 0.00 34.12 2.59
134 135 0.185901 ACAAGTGTTGGCCCATGACT 59.814 50.000 0.00 0.00 34.12 3.41
135 136 0.314935 CACAAGTGTTGGCCCATGAC 59.685 55.000 0.00 0.00 34.12 3.06
136 137 0.827089 CCACAAGTGTTGGCCCATGA 60.827 55.000 0.00 0.00 34.12 3.07
137 138 0.827089 TCCACAAGTGTTGGCCCATG 60.827 55.000 0.00 0.00 34.12 3.66
138 139 0.114954 ATCCACAAGTGTTGGCCCAT 59.885 50.000 0.00 0.00 34.12 4.00
139 140 0.539438 GATCCACAAGTGTTGGCCCA 60.539 55.000 0.00 0.00 34.12 5.36
140 141 0.251341 AGATCCACAAGTGTTGGCCC 60.251 55.000 0.00 0.00 34.12 5.80
141 142 1.168714 GAGATCCACAAGTGTTGGCC 58.831 55.000 0.00 0.00 34.12 5.36
142 143 1.537202 GTGAGATCCACAAGTGTTGGC 59.463 52.381 8.84 0.00 45.03 4.52
152 153 3.069443 GGAGATCCTCTTGTGAGATCCAC 59.931 52.174 7.22 7.22 45.88 4.02
153 154 3.303938 GGAGATCCTCTTGTGAGATCCA 58.696 50.000 0.00 0.00 42.73 3.41
154 155 2.632512 GGGAGATCCTCTTGTGAGATCC 59.367 54.545 0.00 0.00 42.73 3.36
155 156 3.575805 AGGGAGATCCTCTTGTGAGATC 58.424 50.000 0.00 0.00 44.06 2.75
156 157 3.704545 AGGGAGATCCTCTTGTGAGAT 57.295 47.619 0.00 0.00 44.06 2.75
167 168 1.147153 CCTTTGGCGAGGGAGATCC 59.853 63.158 0.00 0.00 32.94 3.36
168 169 0.179070 GACCTTTGGCGAGGGAGATC 60.179 60.000 10.34 0.00 41.31 2.75
169 170 0.909610 TGACCTTTGGCGAGGGAGAT 60.910 55.000 10.34 0.00 41.31 2.75
170 171 0.909610 ATGACCTTTGGCGAGGGAGA 60.910 55.000 10.34 0.00 41.31 3.71
171 172 0.830648 TATGACCTTTGGCGAGGGAG 59.169 55.000 10.34 0.00 41.31 4.30
172 173 0.830648 CTATGACCTTTGGCGAGGGA 59.169 55.000 10.34 0.00 41.31 4.20
173 174 0.541863 ACTATGACCTTTGGCGAGGG 59.458 55.000 10.94 6.52 41.31 4.30
174 175 2.280628 GAACTATGACCTTTGGCGAGG 58.719 52.381 5.29 5.29 42.75 4.63
175 176 2.972625 TGAACTATGACCTTTGGCGAG 58.027 47.619 0.00 0.00 0.00 5.03
176 177 3.244422 ACTTGAACTATGACCTTTGGCGA 60.244 43.478 0.00 0.00 0.00 5.54
177 178 3.074412 ACTTGAACTATGACCTTTGGCG 58.926 45.455 0.00 0.00 0.00 5.69
178 179 4.278419 ACAACTTGAACTATGACCTTTGGC 59.722 41.667 0.00 0.00 0.00 4.52
179 180 6.149474 CCTACAACTTGAACTATGACCTTTGG 59.851 42.308 0.00 0.00 0.00 3.28
180 181 6.934645 TCCTACAACTTGAACTATGACCTTTG 59.065 38.462 0.00 0.00 0.00 2.77
181 182 7.074653 TCCTACAACTTGAACTATGACCTTT 57.925 36.000 0.00 0.00 0.00 3.11
182 183 6.681729 TCCTACAACTTGAACTATGACCTT 57.318 37.500 0.00 0.00 0.00 3.50
183 184 6.681729 TTCCTACAACTTGAACTATGACCT 57.318 37.500 0.00 0.00 0.00 3.85
184 185 8.880750 GTTATTCCTACAACTTGAACTATGACC 58.119 37.037 0.00 0.00 0.00 4.02
185 186 9.654663 AGTTATTCCTACAACTTGAACTATGAC 57.345 33.333 0.00 0.00 30.89 3.06
202 203 9.915629 CTCACTTTCGCTTATATAGTTATTCCT 57.084 33.333 0.00 0.00 0.00 3.36
203 204 8.648968 GCTCACTTTCGCTTATATAGTTATTCC 58.351 37.037 0.00 0.00 0.00 3.01
204 205 9.413048 AGCTCACTTTCGCTTATATAGTTATTC 57.587 33.333 0.00 0.00 31.17 1.75
205 206 9.765795 AAGCTCACTTTCGCTTATATAGTTATT 57.234 29.630 0.00 0.00 44.05 1.40
206 207 9.197694 CAAGCTCACTTTCGCTTATATAGTTAT 57.802 33.333 0.00 0.00 44.06 1.89
207 208 8.195436 ACAAGCTCACTTTCGCTTATATAGTTA 58.805 33.333 0.00 0.00 44.06 2.24
208 209 7.042335 ACAAGCTCACTTTCGCTTATATAGTT 58.958 34.615 0.00 0.00 44.06 2.24
209 210 6.574350 ACAAGCTCACTTTCGCTTATATAGT 58.426 36.000 0.00 0.00 44.06 2.12
210 211 7.470289 AACAAGCTCACTTTCGCTTATATAG 57.530 36.000 0.00 0.00 44.06 1.31
211 212 7.977293 TGTAACAAGCTCACTTTCGCTTATATA 59.023 33.333 0.00 0.00 44.06 0.86
212 213 6.816640 TGTAACAAGCTCACTTTCGCTTATAT 59.183 34.615 0.00 0.00 44.06 0.86
213 214 6.160684 TGTAACAAGCTCACTTTCGCTTATA 58.839 36.000 0.00 0.00 44.06 0.98
214 215 4.994852 TGTAACAAGCTCACTTTCGCTTAT 59.005 37.500 0.00 0.00 44.06 1.73
215 216 4.373527 TGTAACAAGCTCACTTTCGCTTA 58.626 39.130 0.00 0.00 44.06 3.09
216 217 3.202906 TGTAACAAGCTCACTTTCGCTT 58.797 40.909 0.00 0.00 46.59 4.68
217 218 2.833794 TGTAACAAGCTCACTTTCGCT 58.166 42.857 0.00 0.00 38.30 4.93
218 219 3.602390 TTGTAACAAGCTCACTTTCGC 57.398 42.857 0.00 0.00 32.29 4.70
219 220 5.990408 AGATTTGTAACAAGCTCACTTTCG 58.010 37.500 0.00 0.00 32.29 3.46
220 221 6.959361 TGAGATTTGTAACAAGCTCACTTTC 58.041 36.000 9.09 0.00 32.29 2.62
221 222 6.942532 TGAGATTTGTAACAAGCTCACTTT 57.057 33.333 9.09 0.00 32.29 2.66
222 223 8.798859 ATATGAGATTTGTAACAAGCTCACTT 57.201 30.769 13.59 5.07 35.49 3.16
223 224 7.497249 GGATATGAGATTTGTAACAAGCTCACT 59.503 37.037 13.59 6.92 35.49 3.41
224 225 7.280876 TGGATATGAGATTTGTAACAAGCTCAC 59.719 37.037 13.59 5.12 35.49 3.51
225 226 7.337938 TGGATATGAGATTTGTAACAAGCTCA 58.662 34.615 13.65 13.65 36.88 4.26
226 227 7.792374 TGGATATGAGATTTGTAACAAGCTC 57.208 36.000 0.00 4.92 0.00 4.09
227 228 8.757982 AATGGATATGAGATTTGTAACAAGCT 57.242 30.769 0.00 0.00 0.00 3.74
235 236 9.730705 AACGATGATAATGGATATGAGATTTGT 57.269 29.630 0.00 0.00 0.00 2.83
257 258 9.059260 GCCCCTTTTATATAGAAATTGTAACGA 57.941 33.333 0.00 0.00 0.00 3.85
258 259 8.294577 GGCCCCTTTTATATAGAAATTGTAACG 58.705 37.037 0.00 0.00 0.00 3.18
259 260 8.582437 GGGCCCCTTTTATATAGAAATTGTAAC 58.418 37.037 12.23 0.00 0.00 2.50
260 261 7.731235 GGGGCCCCTTTTATATAGAAATTGTAA 59.269 37.037 35.49 0.00 0.00 2.41
261 262 7.243091 GGGGCCCCTTTTATATAGAAATTGTA 58.757 38.462 35.49 0.00 0.00 2.41
262 263 6.082031 GGGGCCCCTTTTATATAGAAATTGT 58.918 40.000 35.49 0.00 0.00 2.71
263 264 5.185056 CGGGGCCCCTTTTATATAGAAATTG 59.815 44.000 38.17 12.69 0.00 2.32
264 265 5.075344 TCGGGGCCCCTTTTATATAGAAATT 59.925 40.000 38.17 0.00 0.00 1.82
265 266 4.604490 TCGGGGCCCCTTTTATATAGAAAT 59.396 41.667 38.17 0.00 0.00 2.17
266 267 3.982052 TCGGGGCCCCTTTTATATAGAAA 59.018 43.478 38.17 1.36 0.00 2.52
267 268 3.585732 CTCGGGGCCCCTTTTATATAGAA 59.414 47.826 38.17 8.58 0.00 2.10
268 269 3.178865 CTCGGGGCCCCTTTTATATAGA 58.821 50.000 38.17 22.55 0.00 1.98
269 270 2.910977 ACTCGGGGCCCCTTTTATATAG 59.089 50.000 38.17 19.42 0.00 1.31
270 271 2.994355 ACTCGGGGCCCCTTTTATATA 58.006 47.619 38.17 11.92 0.00 0.86
271 272 1.829138 ACTCGGGGCCCCTTTTATAT 58.171 50.000 38.17 13.73 0.00 0.86
272 273 1.598869 AACTCGGGGCCCCTTTTATA 58.401 50.000 38.17 15.08 0.00 0.98
273 274 0.708209 AAACTCGGGGCCCCTTTTAT 59.292 50.000 38.17 18.88 0.00 1.40
274 275 0.483770 AAAACTCGGGGCCCCTTTTA 59.516 50.000 38.17 19.43 0.00 1.52
275 276 0.483770 TAAAACTCGGGGCCCCTTTT 59.516 50.000 38.17 34.11 0.00 2.27
276 277 0.039180 CTAAAACTCGGGGCCCCTTT 59.961 55.000 38.17 30.64 0.00 3.11
277 278 1.138228 ACTAAAACTCGGGGCCCCTT 61.138 55.000 38.17 26.55 0.00 3.95
278 279 1.138228 AACTAAAACTCGGGGCCCCT 61.138 55.000 38.17 21.28 0.00 4.79
279 280 0.251474 AAACTAAAACTCGGGGCCCC 60.251 55.000 33.22 33.22 0.00 5.80
280 281 1.171308 GAAACTAAAACTCGGGGCCC 58.829 55.000 15.76 15.76 0.00 5.80
281 282 0.800631 CGAAACTAAAACTCGGGGCC 59.199 55.000 0.00 0.00 0.00 5.80
282 283 0.167470 GCGAAACTAAAACTCGGGGC 59.833 55.000 0.00 0.00 33.23 5.80
283 284 0.800631 GGCGAAACTAAAACTCGGGG 59.199 55.000 0.00 0.00 33.23 5.73
284 285 0.800631 GGGCGAAACTAAAACTCGGG 59.199 55.000 0.00 0.00 33.23 5.14
285 286 0.800631 GGGGCGAAACTAAAACTCGG 59.199 55.000 0.00 0.00 33.23 4.63
286 287 0.441145 CGGGGCGAAACTAAAACTCG 59.559 55.000 0.00 0.00 35.70 4.18
287 288 0.800631 CCGGGGCGAAACTAAAACTC 59.199 55.000 0.00 0.00 0.00 3.01
288 289 0.607217 CCCGGGGCGAAACTAAAACT 60.607 55.000 14.71 0.00 0.00 2.66
289 290 1.878070 CCCGGGGCGAAACTAAAAC 59.122 57.895 14.71 0.00 0.00 2.43
290 291 1.972752 GCCCGGGGCGAAACTAAAA 60.973 57.895 24.63 0.00 39.62 1.52
291 292 2.360225 GCCCGGGGCGAAACTAAA 60.360 61.111 24.63 0.00 39.62 1.85
302 303 4.074408 AGATTTTGGGGGCCCGGG 62.074 66.667 19.09 19.09 39.42 5.73
303 304 2.442087 GAGATTTTGGGGGCCCGG 60.442 66.667 17.79 0.00 39.42 5.73
304 305 1.304879 TTGAGATTTTGGGGGCCCG 60.305 57.895 17.79 0.00 39.42 6.13
305 306 0.041090 TCTTGAGATTTTGGGGGCCC 59.959 55.000 15.76 15.76 0.00 5.80
306 307 1.186200 GTCTTGAGATTTTGGGGGCC 58.814 55.000 0.00 0.00 0.00 5.80
307 308 1.186200 GGTCTTGAGATTTTGGGGGC 58.814 55.000 0.00 0.00 0.00 5.80
308 309 1.463674 CGGTCTTGAGATTTTGGGGG 58.536 55.000 0.00 0.00 0.00 5.40
309 310 1.463674 CCGGTCTTGAGATTTTGGGG 58.536 55.000 0.00 0.00 0.00 4.96
310 311 0.811281 GCCGGTCTTGAGATTTTGGG 59.189 55.000 1.90 0.00 0.00 4.12
311 312 0.811281 GGCCGGTCTTGAGATTTTGG 59.189 55.000 1.90 0.00 0.00 3.28
312 313 0.811281 GGGCCGGTCTTGAGATTTTG 59.189 55.000 5.77 0.00 0.00 2.44
313 314 0.698818 AGGGCCGGTCTTGAGATTTT 59.301 50.000 5.77 0.00 0.00 1.82
314 315 0.035056 CAGGGCCGGTCTTGAGATTT 60.035 55.000 13.86 0.00 0.00 2.17
315 316 1.201429 ACAGGGCCGGTCTTGAGATT 61.201 55.000 26.51 0.00 0.00 2.40
316 317 1.613630 ACAGGGCCGGTCTTGAGAT 60.614 57.895 26.51 0.00 0.00 2.75
317 318 2.203788 ACAGGGCCGGTCTTGAGA 60.204 61.111 26.51 0.00 0.00 3.27
318 319 1.541310 TACACAGGGCCGGTCTTGAG 61.541 60.000 26.51 19.90 0.00 3.02
319 320 1.122632 TTACACAGGGCCGGTCTTGA 61.123 55.000 26.51 0.00 0.00 3.02
320 321 0.250553 TTTACACAGGGCCGGTCTTG 60.251 55.000 17.74 17.74 0.00 3.02
321 322 0.475044 TTTTACACAGGGCCGGTCTT 59.525 50.000 6.27 0.00 0.00 3.01
322 323 0.250597 GTTTTACACAGGGCCGGTCT 60.251 55.000 6.27 0.00 0.00 3.85
323 324 0.250597 AGTTTTACACAGGGCCGGTC 60.251 55.000 6.27 0.00 0.00 4.79
324 325 1.058284 TAGTTTTACACAGGGCCGGT 58.942 50.000 2.53 2.53 0.00 5.28
325 326 2.014128 CATAGTTTTACACAGGGCCGG 58.986 52.381 0.79 0.79 0.00 6.13
326 327 1.400494 GCATAGTTTTACACAGGGCCG 59.600 52.381 0.00 0.00 0.00 6.13
327 328 2.723273 AGCATAGTTTTACACAGGGCC 58.277 47.619 0.00 0.00 0.00 5.80
328 329 6.451064 AAATAGCATAGTTTTACACAGGGC 57.549 37.500 0.00 0.00 0.00 5.19
379 380 7.531534 GCATTATTTCACAGACAAATTTTGCAC 59.468 33.333 9.04 4.27 33.91 4.57
380 381 7.226128 TGCATTATTTCACAGACAAATTTTGCA 59.774 29.630 9.04 1.45 37.45 4.08
381 382 7.574496 TGCATTATTTCACAGACAAATTTTGC 58.426 30.769 9.04 2.76 34.10 3.68
382 383 9.932699 TTTGCATTATTTCACAGACAAATTTTG 57.067 25.926 7.59 7.59 0.00 2.44
384 385 9.328845 ACTTTGCATTATTTCACAGACAAATTT 57.671 25.926 0.00 0.00 0.00 1.82
385 386 8.891671 ACTTTGCATTATTTCACAGACAAATT 57.108 26.923 0.00 0.00 0.00 1.82
386 387 8.891671 AACTTTGCATTATTTCACAGACAAAT 57.108 26.923 0.00 0.00 0.00 2.32
387 388 7.167302 CGAACTTTGCATTATTTCACAGACAAA 59.833 33.333 0.00 0.00 0.00 2.83
388 389 6.636447 CGAACTTTGCATTATTTCACAGACAA 59.364 34.615 0.00 0.00 0.00 3.18
389 390 6.142139 CGAACTTTGCATTATTTCACAGACA 58.858 36.000 0.00 0.00 0.00 3.41
390 391 6.086765 CACGAACTTTGCATTATTTCACAGAC 59.913 38.462 0.00 0.00 0.00 3.51
391 392 6.142139 CACGAACTTTGCATTATTTCACAGA 58.858 36.000 0.00 0.00 0.00 3.41
392 393 5.164158 GCACGAACTTTGCATTATTTCACAG 60.164 40.000 0.00 0.00 39.93 3.66
393 394 4.679197 GCACGAACTTTGCATTATTTCACA 59.321 37.500 0.00 0.00 39.93 3.58
409 410 5.118050 GCCCTTTTTAACAAATAGCACGAAC 59.882 40.000 0.00 0.00 0.00 3.95
412 413 3.606346 CGCCCTTTTTAACAAATAGCACG 59.394 43.478 0.00 0.00 0.00 5.34
421 422 0.389757 GTTGGCCGCCCTTTTTAACA 59.610 50.000 7.03 0.00 0.00 2.41
465 467 3.426568 GCAGTGCGCCCAACTCTC 61.427 66.667 4.18 0.00 32.94 3.20
485 488 4.511826 GTCCGTCTTGTTTGAGATTTGAGT 59.488 41.667 0.00 0.00 0.00 3.41
518 521 1.321074 TTTTCGTTTGGGTTGGCCGT 61.321 50.000 0.00 0.00 34.97 5.68
551 564 3.732892 CAACGCGCCGACCCAAAT 61.733 61.111 5.73 0.00 0.00 2.32
622 635 5.248640 ACTCCTATGTCATGTCACCAAAAG 58.751 41.667 0.00 0.00 0.00 2.27
623 636 5.241403 ACTCCTATGTCATGTCACCAAAA 57.759 39.130 0.00 0.00 0.00 2.44
627 640 4.649674 TCCTTACTCCTATGTCATGTCACC 59.350 45.833 0.00 0.00 0.00 4.02
629 642 5.519808 ACTCCTTACTCCTATGTCATGTCA 58.480 41.667 0.00 0.00 0.00 3.58
630 643 6.999272 TCTACTCCTTACTCCTATGTCATGTC 59.001 42.308 0.00 0.00 0.00 3.06
631 644 6.912426 TCTACTCCTTACTCCTATGTCATGT 58.088 40.000 0.00 0.00 0.00 3.21
632 645 8.415950 AATCTACTCCTTACTCCTATGTCATG 57.584 38.462 0.00 0.00 0.00 3.07
673 689 1.181098 ATGTTTGCTCTTTGCCGCCT 61.181 50.000 0.00 0.00 42.00 5.52
732 753 3.794737 CCACTGATCTCCATGTGGG 57.205 57.895 0.00 0.00 44.33 4.61
734 755 1.434622 GCGCCACTGATCTCCATGTG 61.435 60.000 0.00 0.00 0.00 3.21
735 756 1.153289 GCGCCACTGATCTCCATGT 60.153 57.895 0.00 0.00 0.00 3.21
738 759 3.002583 TGGCGCCACTGATCTCCA 61.003 61.111 29.03 0.00 0.00 3.86
739 760 2.202987 CTGGCGCCACTGATCTCC 60.203 66.667 29.03 0.00 0.00 3.71
740 761 2.894387 GCTGGCGCCACTGATCTC 60.894 66.667 29.03 4.77 0.00 2.75
741 762 3.677284 CTGCTGGCGCCACTGATCT 62.677 63.158 29.03 0.00 34.43 2.75
934 1011 1.855360 GTTCAATAGAAGGCGAGCGAG 59.145 52.381 0.00 0.00 33.63 5.03
935 1012 1.797713 CGTTCAATAGAAGGCGAGCGA 60.798 52.381 0.00 0.00 34.54 4.93
936 1013 0.572590 CGTTCAATAGAAGGCGAGCG 59.427 55.000 0.00 0.00 33.63 5.03
1517 2983 2.332104 CTACTGCTAGCACACACACAG 58.668 52.381 14.93 3.88 0.00 3.66
1912 3488 3.814842 TGTTGAGCACTCCAGTATGTTTG 59.185 43.478 0.00 0.00 0.00 2.93
1915 3491 3.988976 ATGTTGAGCACTCCAGTATGT 57.011 42.857 0.00 0.00 0.00 2.29
1919 3495 2.899900 TCAGTATGTTGAGCACTCCAGT 59.100 45.455 0.00 0.00 37.40 4.00
1922 3498 2.611292 GCATCAGTATGTTGAGCACTCC 59.389 50.000 0.00 0.00 38.03 3.85
1923 3499 3.529533 AGCATCAGTATGTTGAGCACTC 58.470 45.455 0.00 0.00 38.03 3.51
1925 3501 4.183865 TGTAGCATCAGTATGTTGAGCAC 58.816 43.478 0.00 0.00 38.03 4.40
1927 3503 5.801350 TTTGTAGCATCAGTATGTTGAGC 57.199 39.130 0.00 0.00 38.03 4.26
1928 3504 6.690098 GCAATTTGTAGCATCAGTATGTTGAG 59.310 38.462 0.00 0.00 38.03 3.02
1930 3506 6.558009 AGCAATTTGTAGCATCAGTATGTTG 58.442 36.000 0.00 0.00 38.79 3.33
1942 3525 3.923017 AGACACCAAGCAATTTGTAGC 57.077 42.857 0.00 0.00 34.87 3.58
1943 3526 5.239306 TCTGAAGACACCAAGCAATTTGTAG 59.761 40.000 0.00 0.00 34.87 2.74
2064 3675 3.119280 TCAATCGTTGTCATCGCTTCCTA 60.119 43.478 0.00 0.00 0.00 2.94
2073 3684 7.381766 TGAGATTTTGATCAATCGTTGTCAT 57.618 32.000 9.40 0.00 38.10 3.06
2076 3687 6.032094 GCATGAGATTTTGATCAATCGTTGT 58.968 36.000 9.40 0.00 38.10 3.32
2086 3697 3.319972 CGGGAATGGCATGAGATTTTGAT 59.680 43.478 0.00 0.00 0.00 2.57
2277 3914 9.502145 TTTATAAGCTACAAAATCGAAGCAATG 57.498 29.630 7.24 0.00 37.44 2.82
2307 3944 1.270625 TGCTACAAAACGGAGGGAGTG 60.271 52.381 0.00 0.00 0.00 3.51
2316 3953 6.252281 TGAACTAAAACAGTGCTACAAAACG 58.748 36.000 0.00 0.00 37.63 3.60
2320 3957 9.081997 CAAATTTGAACTAAAACAGTGCTACAA 57.918 29.630 13.08 0.00 37.63 2.41
2321 3958 8.462811 TCAAATTTGAACTAAAACAGTGCTACA 58.537 29.630 18.45 0.00 37.63 2.74
2322 3959 8.850454 TCAAATTTGAACTAAAACAGTGCTAC 57.150 30.769 18.45 0.00 37.63 3.58
2338 3982 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
2342 3986 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2347 3991 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2354 3998 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2356 4000 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2357 4001 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2362 4006 4.392138 CACTTCCTCCGTTCCAAATTACTC 59.608 45.833 0.00 0.00 0.00 2.59
2369 4013 1.345415 GTACCACTTCCTCCGTTCCAA 59.655 52.381 0.00 0.00 0.00 3.53
2381 4025 6.601613 TGAAGAATTTTGACACAGTACCACTT 59.398 34.615 0.00 0.00 0.00 3.16
2385 4029 8.871686 ATTTTGAAGAATTTTGACACAGTACC 57.128 30.769 0.00 0.00 0.00 3.34
2406 4050 8.640063 AAACCAACCGGAATACTAGTTATTTT 57.360 30.769 9.46 0.00 35.59 1.82
2414 4058 4.081309 CAGAGGAAACCAACCGGAATACTA 60.081 45.833 9.46 0.00 35.59 1.82
2415 4059 2.910977 AGAGGAAACCAACCGGAATACT 59.089 45.455 9.46 0.00 35.59 2.12
2416 4060 3.007635 CAGAGGAAACCAACCGGAATAC 58.992 50.000 9.46 0.00 35.59 1.89
2476 4120 3.431912 TGTTTATGCGTGCTACACAGAAG 59.568 43.478 0.00 0.00 33.40 2.85
2490 4134 4.418392 CATCAGGAAAGCACTGTTTATGC 58.582 43.478 0.00 0.00 43.74 3.14
2517 4163 2.224281 TGAGACACTTTCAGCACCGATT 60.224 45.455 0.00 0.00 0.00 3.34
2595 4242 9.041354 TGCCCATTTAAGTCTTTTTATATTGGT 57.959 29.630 0.00 0.00 0.00 3.67
2596 4243 9.533253 CTGCCCATTTAAGTCTTTTTATATTGG 57.467 33.333 0.00 0.00 0.00 3.16
2600 4247 9.920946 AGATCTGCCCATTTAAGTCTTTTTATA 57.079 29.630 0.00 0.00 0.00 0.98
2601 4248 8.829373 AGATCTGCCCATTTAAGTCTTTTTAT 57.171 30.769 0.00 0.00 0.00 1.40
2602 4249 9.747898 TTAGATCTGCCCATTTAAGTCTTTTTA 57.252 29.630 5.18 0.00 0.00 1.52
2603 4250 8.650143 TTAGATCTGCCCATTTAAGTCTTTTT 57.350 30.769 5.18 0.00 0.00 1.94
2604 4251 8.523658 GTTTAGATCTGCCCATTTAAGTCTTTT 58.476 33.333 5.18 0.00 0.00 2.27
2605 4252 7.122799 GGTTTAGATCTGCCCATTTAAGTCTTT 59.877 37.037 5.18 0.00 0.00 2.52
2606 4253 6.603599 GGTTTAGATCTGCCCATTTAAGTCTT 59.396 38.462 5.18 0.00 0.00 3.01
2607 4254 6.122964 GGTTTAGATCTGCCCATTTAAGTCT 58.877 40.000 5.18 0.00 0.00 3.24
2608 4255 5.885912 TGGTTTAGATCTGCCCATTTAAGTC 59.114 40.000 5.18 0.00 0.00 3.01
2609 4256 5.826643 TGGTTTAGATCTGCCCATTTAAGT 58.173 37.500 5.18 0.00 0.00 2.24
2610 4257 6.774656 AGATGGTTTAGATCTGCCCATTTAAG 59.225 38.462 18.28 0.00 36.08 1.85
2611 4258 6.672593 AGATGGTTTAGATCTGCCCATTTAA 58.327 36.000 18.28 0.00 36.08 1.52
2612 4259 6.266131 AGATGGTTTAGATCTGCCCATTTA 57.734 37.500 18.28 0.36 36.08 1.40
2613 4260 5.134725 AGATGGTTTAGATCTGCCCATTT 57.865 39.130 18.28 12.77 36.08 2.32
2614 4261 4.723309 GAGATGGTTTAGATCTGCCCATT 58.277 43.478 18.28 11.37 36.08 3.16
2615 4262 3.244353 CGAGATGGTTTAGATCTGCCCAT 60.244 47.826 17.63 17.63 38.58 4.00
2616 4263 2.103094 CGAGATGGTTTAGATCTGCCCA 59.897 50.000 5.18 8.80 29.97 5.36
2617 4264 2.365617 TCGAGATGGTTTAGATCTGCCC 59.634 50.000 5.18 2.84 29.97 5.36
2618 4265 3.385577 GTCGAGATGGTTTAGATCTGCC 58.614 50.000 5.18 5.70 29.97 4.85
2619 4266 3.385577 GGTCGAGATGGTTTAGATCTGC 58.614 50.000 5.18 0.00 29.97 4.26
2620 4267 3.066900 ACGGTCGAGATGGTTTAGATCTG 59.933 47.826 5.18 0.00 29.97 2.90
2621 4268 3.288964 ACGGTCGAGATGGTTTAGATCT 58.711 45.455 0.00 0.00 32.63 2.75
2622 4269 3.066342 TGACGGTCGAGATGGTTTAGATC 59.934 47.826 3.34 0.00 0.00 2.75
2623 4270 3.021695 TGACGGTCGAGATGGTTTAGAT 58.978 45.455 3.34 0.00 0.00 1.98
2624 4271 2.439409 TGACGGTCGAGATGGTTTAGA 58.561 47.619 3.34 0.00 0.00 2.10
2625 4272 2.933495 TGACGGTCGAGATGGTTTAG 57.067 50.000 3.34 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.