Multiple sequence alignment - TraesCS1A01G359400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G359400 chr1A 100.000 2733 0 0 1 2733 540889525 540886793 0.000000e+00 5048
1 TraesCS1A01G359400 chr1A 98.180 824 13 2 1 824 146943316 146942495 0.000000e+00 1437
2 TraesCS1A01G359400 chr1A 82.622 656 65 32 927 1581 588128772 588129379 4.010000e-148 534
3 TraesCS1A01G359400 chr1A 84.164 562 57 20 1240 1793 588098283 588098820 1.450000e-142 516
4 TraesCS1A01G359400 chr1A 86.885 183 14 7 895 1075 588096701 588096875 2.150000e-46 196
5 TraesCS1A01G359400 chr1D 95.686 1020 18 9 820 1835 489092295 489091298 0.000000e+00 1616
6 TraesCS1A01G359400 chr1D 89.679 436 28 10 1847 2277 489091322 489090899 8.610000e-150 540
7 TraesCS1A01G359400 chr1D 86.512 430 33 18 1240 1669 490093617 490093213 1.490000e-122 449
8 TraesCS1A01G359400 chr1D 89.121 239 14 6 944 1176 490095523 490095291 1.240000e-73 287
9 TraesCS1A01G359400 chr1D 95.238 63 3 0 2261 2323 489090443 489090381 1.730000e-17 100
10 TraesCS1A01G359400 chr2A 98.180 824 13 2 1 824 346061079 346061900 0.000000e+00 1437
11 TraesCS1A01G359400 chr6A 97.942 826 13 4 1 825 534982355 534983177 0.000000e+00 1428
12 TraesCS1A01G359400 chr6A 98.046 819 13 3 1 819 499621582 499620767 0.000000e+00 1421
13 TraesCS1A01G359400 chr1B 92.588 823 50 9 1 815 623541503 623542322 0.000000e+00 1171
14 TraesCS1A01G359400 chr1B 91.941 819 51 13 1 812 262609065 262608255 0.000000e+00 1133
15 TraesCS1A01G359400 chr1B 81.354 783 75 39 889 1669 680934763 680934050 3.050000e-159 571
16 TraesCS1A01G359400 chr3A 98.065 672 9 4 1 672 125482471 125481804 0.000000e+00 1166
17 TraesCS1A01G359400 chr6B 91.495 823 63 7 1 819 223256229 223257048 0.000000e+00 1125
18 TraesCS1A01G359400 chr7B 91.052 827 63 7 1 819 501938110 501937287 0.000000e+00 1107
19 TraesCS1A01G359400 chr7B 89.866 819 73 8 5 819 92816304 92815492 0.000000e+00 1044


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G359400 chr1A 540886793 540889525 2732 True 5048 5048 100.000000 1 2733 1 chr1A.!!$R2 2732
1 TraesCS1A01G359400 chr1A 146942495 146943316 821 True 1437 1437 98.180000 1 824 1 chr1A.!!$R1 823
2 TraesCS1A01G359400 chr1A 588128772 588129379 607 False 534 534 82.622000 927 1581 1 chr1A.!!$F1 654
3 TraesCS1A01G359400 chr1A 588096701 588098820 2119 False 356 516 85.524500 895 1793 2 chr1A.!!$F2 898
4 TraesCS1A01G359400 chr1D 489090381 489092295 1914 True 752 1616 93.534333 820 2323 3 chr1D.!!$R1 1503
5 TraesCS1A01G359400 chr1D 490093213 490095523 2310 True 368 449 87.816500 944 1669 2 chr1D.!!$R2 725
6 TraesCS1A01G359400 chr2A 346061079 346061900 821 False 1437 1437 98.180000 1 824 1 chr2A.!!$F1 823
7 TraesCS1A01G359400 chr6A 534982355 534983177 822 False 1428 1428 97.942000 1 825 1 chr6A.!!$F1 824
8 TraesCS1A01G359400 chr6A 499620767 499621582 815 True 1421 1421 98.046000 1 819 1 chr6A.!!$R1 818
9 TraesCS1A01G359400 chr1B 623541503 623542322 819 False 1171 1171 92.588000 1 815 1 chr1B.!!$F1 814
10 TraesCS1A01G359400 chr1B 262608255 262609065 810 True 1133 1133 91.941000 1 812 1 chr1B.!!$R1 811
11 TraesCS1A01G359400 chr1B 680934050 680934763 713 True 571 571 81.354000 889 1669 1 chr1B.!!$R2 780
12 TraesCS1A01G359400 chr3A 125481804 125482471 667 True 1166 1166 98.065000 1 672 1 chr3A.!!$R1 671
13 TraesCS1A01G359400 chr6B 223256229 223257048 819 False 1125 1125 91.495000 1 819 1 chr6B.!!$F1 818
14 TraesCS1A01G359400 chr7B 501937287 501938110 823 True 1107 1107 91.052000 1 819 1 chr7B.!!$R2 818
15 TraesCS1A01G359400 chr7B 92815492 92816304 812 True 1044 1044 89.866000 5 819 1 chr7B.!!$R1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 855 1.426215 CCCTCTCTACTACCTCCTCCC 59.574 61.905 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 3647 0.035458 AACAGAAAGGGAGGCGAGTG 59.965 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 7.329226 CACAGATCCAAAAATATGTTCGCTTTT 59.671 33.333 0.00 0.00 28.92 2.27
314 317 7.904977 GCTTTCTTCAAATTTTGTTCCAAGTTC 59.095 33.333 8.89 0.00 0.00 3.01
766 779 4.038080 GGCCCAAACGAAGCACCG 62.038 66.667 0.00 0.00 0.00 4.94
837 855 1.426215 CCCTCTCTACTACCTCCTCCC 59.574 61.905 0.00 0.00 0.00 4.30
880 898 4.424711 GGGCCTGGCGGATTGTGA 62.425 66.667 13.40 0.00 0.00 3.58
1124 1148 4.514577 CCGCCCGAATCTCACGCT 62.515 66.667 0.00 0.00 0.00 5.07
1125 1149 2.956964 CGCCCGAATCTCACGCTC 60.957 66.667 0.00 0.00 0.00 5.03
1126 1150 2.184322 GCCCGAATCTCACGCTCA 59.816 61.111 0.00 0.00 0.00 4.26
1127 1151 2.167861 GCCCGAATCTCACGCTCAC 61.168 63.158 0.00 0.00 0.00 3.51
1177 1201 6.960542 TCCCTAGTTATCCAGTCTTCTTTTCT 59.039 38.462 0.00 0.00 0.00 2.52
1183 1207 9.634021 AGTTATCCAGTCTTCTTTTCTTTTCTT 57.366 29.630 0.00 0.00 0.00 2.52
1366 3132 1.667830 CAACGACGGCTCCATGTGT 60.668 57.895 0.00 0.00 0.00 3.72
1378 3144 3.250040 GCTCCATGTGTTACTCAAACGTT 59.750 43.478 0.00 0.00 41.30 3.99
1457 3223 7.385778 TGGTACAGTACATATTTTCTTTGCC 57.614 36.000 12.89 0.00 0.00 4.52
1459 3225 6.602009 GGTACAGTACATATTTTCTTTGCCCT 59.398 38.462 12.89 0.00 0.00 5.19
1461 3227 7.539034 ACAGTACATATTTTCTTTGCCCTTT 57.461 32.000 0.00 0.00 0.00 3.11
1462 3228 7.962441 ACAGTACATATTTTCTTTGCCCTTTT 58.038 30.769 0.00 0.00 0.00 2.27
1463 3229 8.428852 ACAGTACATATTTTCTTTGCCCTTTTT 58.571 29.630 0.00 0.00 0.00 1.94
1588 3364 1.516161 GGCGTTACCTTCGGAAAGTT 58.484 50.000 0.00 0.00 34.51 2.66
1628 3404 0.680921 GATGTGCTTAAGCCCTGGCA 60.681 55.000 24.30 14.72 44.88 4.92
1654 3430 2.801699 CGCCTACGCAATCTGGAACATA 60.802 50.000 0.00 0.00 33.36 2.29
1759 3541 1.265365 GAAGTGGTTGTCTGCTGAAGC 59.735 52.381 0.00 0.00 42.50 3.86
1828 3611 2.270352 TGTCTTTGAGAATTGCCGGT 57.730 45.000 1.90 0.00 0.00 5.28
1829 3612 2.151202 TGTCTTTGAGAATTGCCGGTC 58.849 47.619 1.90 0.00 0.00 4.79
1830 3613 1.128692 GTCTTTGAGAATTGCCGGTCG 59.871 52.381 1.90 0.00 0.00 4.79
1831 3614 0.179189 CTTTGAGAATTGCCGGTCGC 60.179 55.000 1.90 0.00 38.31 5.19
1832 3615 1.582610 TTTGAGAATTGCCGGTCGCC 61.583 55.000 1.90 0.00 36.24 5.54
1833 3616 2.125106 GAGAATTGCCGGTCGCCT 60.125 61.111 1.90 0.00 36.24 5.52
1834 3617 2.125106 AGAATTGCCGGTCGCCTC 60.125 61.111 1.90 0.00 36.24 4.70
1835 3618 2.435938 GAATTGCCGGTCGCCTCA 60.436 61.111 1.90 0.00 36.24 3.86
1836 3619 2.436646 AATTGCCGGTCGCCTCAG 60.437 61.111 1.90 0.00 36.24 3.35
1837 3620 3.976701 AATTGCCGGTCGCCTCAGG 62.977 63.158 1.90 0.00 36.24 3.86
1843 3626 4.329545 GGTCGCCTCAGGTTGCCA 62.330 66.667 0.00 0.00 0.00 4.92
1844 3627 2.281484 GTCGCCTCAGGTTGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
1845 3628 1.896660 GTCGCCTCAGGTTGCCAAA 60.897 57.895 0.00 0.00 0.00 3.28
1846 3629 1.600636 TCGCCTCAGGTTGCCAAAG 60.601 57.895 0.00 0.00 0.00 2.77
1847 3630 1.898574 CGCCTCAGGTTGCCAAAGT 60.899 57.895 0.00 0.00 0.00 2.66
1848 3631 1.856265 CGCCTCAGGTTGCCAAAGTC 61.856 60.000 0.00 0.00 0.00 3.01
1849 3632 0.538287 GCCTCAGGTTGCCAAAGTCT 60.538 55.000 0.00 0.00 0.00 3.24
1850 3633 1.986882 CCTCAGGTTGCCAAAGTCTT 58.013 50.000 0.00 0.00 0.00 3.01
1851 3634 1.610522 CCTCAGGTTGCCAAAGTCTTG 59.389 52.381 0.00 0.00 0.00 3.02
1852 3635 2.301346 CTCAGGTTGCCAAAGTCTTGT 58.699 47.619 0.00 0.00 0.00 3.16
1853 3636 2.023673 TCAGGTTGCCAAAGTCTTGTG 58.976 47.619 0.00 0.00 0.00 3.33
1854 3637 1.067516 CAGGTTGCCAAAGTCTTGTGG 59.932 52.381 8.60 8.60 38.00 4.17
1855 3638 1.064017 AGGTTGCCAAAGTCTTGTGGA 60.064 47.619 14.42 0.00 37.03 4.02
1856 3639 1.338020 GGTTGCCAAAGTCTTGTGGAG 59.662 52.381 14.42 0.00 37.03 3.86
1857 3640 2.297701 GTTGCCAAAGTCTTGTGGAGA 58.702 47.619 14.42 3.33 37.03 3.71
1858 3641 2.687935 GTTGCCAAAGTCTTGTGGAGAA 59.312 45.455 14.42 6.40 37.03 2.87
1859 3642 3.228188 TGCCAAAGTCTTGTGGAGAAT 57.772 42.857 14.42 0.00 37.03 2.40
1860 3643 3.565307 TGCCAAAGTCTTGTGGAGAATT 58.435 40.909 14.42 0.00 44.02 2.17
1861 3644 3.318839 TGCCAAAGTCTTGTGGAGAATTG 59.681 43.478 14.42 0.00 41.50 2.32
1862 3645 3.305608 GCCAAAGTCTTGTGGAGAATTGG 60.306 47.826 14.42 13.43 46.50 3.16
1863 3646 3.891366 CCAAAGTCTTGTGGAGAATTGGT 59.109 43.478 7.62 0.00 41.50 3.67
1864 3647 4.022849 CCAAAGTCTTGTGGAGAATTGGTC 60.023 45.833 7.62 0.00 41.50 4.02
1865 3648 4.437682 AAGTCTTGTGGAGAATTGGTCA 57.562 40.909 0.00 0.00 40.87 4.02
1866 3649 3.744660 AGTCTTGTGGAGAATTGGTCAC 58.255 45.455 0.00 0.00 35.79 3.67
1929 3712 9.869844 GTTGTGTAATGATGCTTAACTGATATC 57.130 33.333 0.00 0.00 0.00 1.63
1967 3750 5.068067 TGAGATTTGCATGTCCATATGGTTG 59.932 40.000 21.28 17.00 36.34 3.77
1977 3760 2.238646 TCCATATGGTTGTGGTGGTCTC 59.761 50.000 21.28 0.00 35.69 3.36
2123 3906 3.256631 ACTTGCATTGAGCCAACTTAAGG 59.743 43.478 7.53 0.00 44.83 2.69
2132 3915 4.202461 TGAGCCAACTTAAGGTCTCAATGT 60.202 41.667 8.98 0.00 36.81 2.71
2138 3921 7.309194 GCCAACTTAAGGTCTCAATGTACATTT 60.309 37.037 18.50 5.23 0.00 2.32
2160 3943 9.282247 CATTTGAGCTGATGTCATTACTTTAAC 57.718 33.333 0.00 0.00 0.00 2.01
2161 3944 6.985188 TGAGCTGATGTCATTACTTTAACC 57.015 37.500 0.00 0.00 0.00 2.85
2162 3945 5.880332 TGAGCTGATGTCATTACTTTAACCC 59.120 40.000 0.00 0.00 0.00 4.11
2163 3946 6.067217 AGCTGATGTCATTACTTTAACCCT 57.933 37.500 0.00 0.00 0.00 4.34
2164 3947 5.882557 AGCTGATGTCATTACTTTAACCCTG 59.117 40.000 0.00 0.00 0.00 4.45
2165 3948 5.648092 GCTGATGTCATTACTTTAACCCTGT 59.352 40.000 0.00 0.00 0.00 4.00
2212 3999 9.528018 AAAATTTACCACTCTACAATTTGTGTG 57.472 29.630 12.30 11.04 41.89 3.82
2213 4000 7.817418 ATTTACCACTCTACAATTTGTGTGT 57.183 32.000 12.30 5.40 41.89 3.72
2214 4001 8.911918 ATTTACCACTCTACAATTTGTGTGTA 57.088 30.769 12.30 5.05 41.89 2.90
2216 4003 8.734218 TTACCACTCTACAATTTGTGTGTAAA 57.266 30.769 12.30 5.75 41.89 2.01
2217 4004 7.633193 ACCACTCTACAATTTGTGTGTAAAA 57.367 32.000 12.30 0.00 41.89 1.52
2218 4005 7.703328 ACCACTCTACAATTTGTGTGTAAAAG 58.297 34.615 12.30 0.01 41.89 2.27
2219 4006 7.554835 ACCACTCTACAATTTGTGTGTAAAAGA 59.445 33.333 12.30 4.34 41.89 2.52
2220 4007 7.855904 CCACTCTACAATTTGTGTGTAAAAGAC 59.144 37.037 12.30 0.00 41.89 3.01
2245 4032 2.859165 TGGTTGGAGAAGCTACTTGG 57.141 50.000 0.00 0.00 0.00 3.61
2259 4046 8.852135 AGAAGCTACTTGGTCTATATCTGTAAC 58.148 37.037 0.00 0.00 0.00 2.50
2288 4546 4.096382 AGTTCGACAATGTCTTTGCTTGTT 59.904 37.500 11.92 0.00 39.03 2.83
2289 4547 4.630894 TCGACAATGTCTTTGCTTGTTT 57.369 36.364 11.92 0.00 39.03 2.83
2294 4552 4.562394 ACAATGTCTTTGCTTGTTTGTTCG 59.438 37.500 0.00 0.00 39.03 3.95
2329 4587 1.889545 GCTGGGCCATGAAGAGTATC 58.110 55.000 6.72 0.00 0.00 2.24
2330 4588 1.141657 GCTGGGCCATGAAGAGTATCA 59.858 52.381 6.72 0.00 37.82 2.15
2331 4589 2.843701 CTGGGCCATGAAGAGTATCAC 58.156 52.381 6.72 0.00 37.82 3.06
2332 4590 1.490490 TGGGCCATGAAGAGTATCACC 59.510 52.381 0.00 0.00 37.82 4.02
2333 4591 1.771255 GGGCCATGAAGAGTATCACCT 59.229 52.381 4.39 0.00 37.82 4.00
2334 4592 2.224402 GGGCCATGAAGAGTATCACCTC 60.224 54.545 4.39 0.00 37.82 3.85
2335 4593 2.224402 GGCCATGAAGAGTATCACCTCC 60.224 54.545 0.00 0.00 37.82 4.30
2336 4594 2.435805 GCCATGAAGAGTATCACCTCCA 59.564 50.000 0.00 0.00 37.82 3.86
2337 4595 3.494048 GCCATGAAGAGTATCACCTCCAG 60.494 52.174 0.00 0.00 37.82 3.86
2338 4596 3.070734 CCATGAAGAGTATCACCTCCAGG 59.929 52.174 0.00 0.00 37.82 4.45
2339 4597 3.757947 TGAAGAGTATCACCTCCAGGA 57.242 47.619 0.00 0.00 37.82 3.86
2340 4598 3.366396 TGAAGAGTATCACCTCCAGGAC 58.634 50.000 0.00 0.00 37.82 3.85
2341 4599 2.060050 AGAGTATCACCTCCAGGACG 57.940 55.000 0.00 0.00 37.82 4.79
2342 4600 1.564818 AGAGTATCACCTCCAGGACGA 59.435 52.381 0.00 0.00 37.82 4.20
2343 4601 2.175931 AGAGTATCACCTCCAGGACGAT 59.824 50.000 0.00 3.85 37.82 3.73
2344 4602 3.394940 AGAGTATCACCTCCAGGACGATA 59.605 47.826 0.00 2.92 37.82 2.92
2345 4603 4.043561 AGAGTATCACCTCCAGGACGATAT 59.956 45.833 0.00 0.00 37.82 1.63
2346 4604 4.082845 AGTATCACCTCCAGGACGATATG 58.917 47.826 0.00 0.00 36.39 1.78
2347 4605 2.748209 TCACCTCCAGGACGATATGA 57.252 50.000 0.00 0.00 38.94 2.15
2348 4606 2.307768 TCACCTCCAGGACGATATGAC 58.692 52.381 0.00 0.00 38.94 3.06
2349 4607 2.091830 TCACCTCCAGGACGATATGACT 60.092 50.000 0.00 0.00 38.94 3.41
2350 4608 2.294791 CACCTCCAGGACGATATGACTC 59.705 54.545 0.00 0.00 38.94 3.36
2351 4609 1.889829 CCTCCAGGACGATATGACTCC 59.110 57.143 0.00 0.00 37.39 3.85
2352 4610 2.489985 CCTCCAGGACGATATGACTCCT 60.490 54.545 0.00 0.00 37.39 3.69
2353 4611 3.226777 CTCCAGGACGATATGACTCCTT 58.773 50.000 0.00 0.00 31.58 3.36
2354 4612 3.639094 CTCCAGGACGATATGACTCCTTT 59.361 47.826 0.00 0.00 31.58 3.11
2355 4613 4.030913 TCCAGGACGATATGACTCCTTTT 58.969 43.478 0.00 0.00 31.58 2.27
2356 4614 4.099573 TCCAGGACGATATGACTCCTTTTC 59.900 45.833 0.00 0.00 31.58 2.29
2357 4615 4.045104 CAGGACGATATGACTCCTTTTCG 58.955 47.826 0.00 0.00 31.58 3.46
2358 4616 2.795470 GGACGATATGACTCCTTTTCGC 59.205 50.000 0.00 0.00 0.00 4.70
2359 4617 3.444916 GACGATATGACTCCTTTTCGCA 58.555 45.455 0.00 0.00 0.00 5.10
2360 4618 4.051922 GACGATATGACTCCTTTTCGCAT 58.948 43.478 0.00 0.00 0.00 4.73
2361 4619 4.051922 ACGATATGACTCCTTTTCGCATC 58.948 43.478 0.00 0.00 0.00 3.91
2362 4620 4.051237 CGATATGACTCCTTTTCGCATCA 58.949 43.478 0.00 0.00 0.00 3.07
2363 4621 4.149571 CGATATGACTCCTTTTCGCATCAG 59.850 45.833 0.00 0.00 0.00 2.90
2364 4622 1.442769 TGACTCCTTTTCGCATCAGC 58.557 50.000 0.00 0.00 37.42 4.26
2365 4623 1.270785 TGACTCCTTTTCGCATCAGCA 60.271 47.619 0.00 0.00 42.27 4.41
2366 4624 1.806542 GACTCCTTTTCGCATCAGCAA 59.193 47.619 0.00 0.00 42.27 3.91
2367 4625 1.808945 ACTCCTTTTCGCATCAGCAAG 59.191 47.619 0.00 0.00 42.27 4.01
2368 4626 0.523072 TCCTTTTCGCATCAGCAAGC 59.477 50.000 0.00 0.00 42.27 4.01
2379 4637 3.910767 GCATCAGCAAGCGATTTATTAGC 59.089 43.478 0.00 0.00 41.58 3.09
2380 4638 4.320057 GCATCAGCAAGCGATTTATTAGCT 60.320 41.667 0.00 0.00 43.90 3.32
2381 4639 5.380651 CATCAGCAAGCGATTTATTAGCTC 58.619 41.667 0.00 0.00 40.78 4.09
2382 4640 3.490896 TCAGCAAGCGATTTATTAGCTCG 59.509 43.478 0.00 0.00 40.78 5.03
2387 4645 1.439679 CGATTTATTAGCTCGCCCCC 58.560 55.000 0.00 0.00 0.00 5.40
2388 4646 1.270625 CGATTTATTAGCTCGCCCCCA 60.271 52.381 0.00 0.00 0.00 4.96
2389 4647 2.615493 CGATTTATTAGCTCGCCCCCAT 60.615 50.000 0.00 0.00 0.00 4.00
2390 4648 2.270352 TTTATTAGCTCGCCCCCATG 57.730 50.000 0.00 0.00 0.00 3.66
2391 4649 1.429930 TTATTAGCTCGCCCCCATGA 58.570 50.000 0.00 0.00 0.00 3.07
2392 4650 0.685097 TATTAGCTCGCCCCCATGAC 59.315 55.000 0.00 0.00 0.00 3.06
2393 4651 1.344953 ATTAGCTCGCCCCCATGACA 61.345 55.000 0.00 0.00 0.00 3.58
2394 4652 1.558167 TTAGCTCGCCCCCATGACAA 61.558 55.000 0.00 0.00 0.00 3.18
2395 4653 2.252072 TAGCTCGCCCCCATGACAAC 62.252 60.000 0.00 0.00 0.00 3.32
2396 4654 2.350895 CTCGCCCCCATGACAACA 59.649 61.111 0.00 0.00 0.00 3.33
2397 4655 1.746615 CTCGCCCCCATGACAACAG 60.747 63.158 0.00 0.00 0.00 3.16
2398 4656 2.184020 CTCGCCCCCATGACAACAGA 62.184 60.000 0.00 0.00 0.00 3.41
2399 4657 1.077501 CGCCCCCATGACAACAGAT 60.078 57.895 0.00 0.00 0.00 2.90
2400 4658 1.378882 CGCCCCCATGACAACAGATG 61.379 60.000 0.00 0.00 0.00 2.90
2401 4659 1.039233 GCCCCCATGACAACAGATGG 61.039 60.000 0.00 0.00 0.00 3.51
2402 4660 0.332632 CCCCCATGACAACAGATGGT 59.667 55.000 0.00 0.00 32.48 3.55
2403 4661 1.272648 CCCCCATGACAACAGATGGTT 60.273 52.381 0.00 0.00 41.47 3.67
2425 4683 6.947644 TTGATCTGATCAATGTATTGGGTG 57.052 37.500 25.05 0.00 43.84 4.61
2426 4684 4.823442 TGATCTGATCAATGTATTGGGTGC 59.177 41.667 17.56 0.00 38.30 5.01
2427 4685 4.508551 TCTGATCAATGTATTGGGTGCT 57.491 40.909 0.00 0.00 38.30 4.40
2428 4686 4.858850 TCTGATCAATGTATTGGGTGCTT 58.141 39.130 0.00 0.00 38.30 3.91
2429 4687 6.000246 TCTGATCAATGTATTGGGTGCTTA 58.000 37.500 0.00 0.00 38.30 3.09
2430 4688 6.604171 TCTGATCAATGTATTGGGTGCTTAT 58.396 36.000 0.00 0.00 38.30 1.73
2431 4689 7.062322 TCTGATCAATGTATTGGGTGCTTATT 58.938 34.615 0.00 0.00 38.30 1.40
2432 4690 7.229306 TCTGATCAATGTATTGGGTGCTTATTC 59.771 37.037 0.00 0.00 38.30 1.75
2433 4691 5.749596 TCAATGTATTGGGTGCTTATTCG 57.250 39.130 4.89 0.00 38.30 3.34
2434 4692 5.189928 TCAATGTATTGGGTGCTTATTCGT 58.810 37.500 4.89 0.00 38.30 3.85
2435 4693 5.650266 TCAATGTATTGGGTGCTTATTCGTT 59.350 36.000 4.89 0.00 38.30 3.85
2436 4694 6.151985 TCAATGTATTGGGTGCTTATTCGTTT 59.848 34.615 4.89 0.00 38.30 3.60
2437 4695 5.968528 TGTATTGGGTGCTTATTCGTTTT 57.031 34.783 0.00 0.00 0.00 2.43
2438 4696 6.334102 TGTATTGGGTGCTTATTCGTTTTT 57.666 33.333 0.00 0.00 0.00 1.94
2497 4755 9.603921 ATGCTTTTTACAATAATTGGAATCAGG 57.396 29.630 0.00 0.00 32.53 3.86
2498 4756 8.811017 TGCTTTTTACAATAATTGGAATCAGGA 58.189 29.630 0.00 0.00 32.53 3.86
2499 4757 9.651913 GCTTTTTACAATAATTGGAATCAGGAA 57.348 29.630 0.00 0.00 32.53 3.36
2512 4770 2.604686 AGGAACTGAGGCGGCTGA 60.605 61.111 19.63 7.26 37.18 4.26
2513 4771 1.992277 AGGAACTGAGGCGGCTGAT 60.992 57.895 19.63 0.00 37.18 2.90
2514 4772 1.522580 GGAACTGAGGCGGCTGATC 60.523 63.158 19.63 7.16 0.00 2.92
2515 4773 1.522580 GAACTGAGGCGGCTGATCC 60.523 63.158 19.63 1.41 0.00 3.36
2516 4774 2.244117 GAACTGAGGCGGCTGATCCA 62.244 60.000 19.63 7.13 34.01 3.41
2517 4775 1.630126 AACTGAGGCGGCTGATCCAT 61.630 55.000 19.63 0.00 34.01 3.41
2518 4776 1.301558 CTGAGGCGGCTGATCCATC 60.302 63.158 19.63 0.00 34.01 3.51
2519 4777 2.031768 GAGGCGGCTGATCCATCC 59.968 66.667 19.63 0.00 34.01 3.51
2520 4778 2.769621 AGGCGGCTGATCCATCCA 60.770 61.111 12.25 0.00 34.01 3.41
2521 4779 2.121992 GAGGCGGCTGATCCATCCAT 62.122 60.000 19.63 0.00 34.01 3.41
2522 4780 0.837691 AGGCGGCTGATCCATCCATA 60.838 55.000 12.25 0.00 34.01 2.74
2523 4781 0.674895 GGCGGCTGATCCATCCATAC 60.675 60.000 0.00 0.00 34.01 2.39
2524 4782 0.674895 GCGGCTGATCCATCCATACC 60.675 60.000 0.00 0.00 34.01 2.73
2525 4783 0.979665 CGGCTGATCCATCCATACCT 59.020 55.000 0.00 0.00 34.01 3.08
2526 4784 1.066573 CGGCTGATCCATCCATACCTC 60.067 57.143 0.00 0.00 34.01 3.85
2527 4785 1.280421 GGCTGATCCATCCATACCTCC 59.720 57.143 0.00 0.00 34.01 4.30
2528 4786 2.264455 GCTGATCCATCCATACCTCCT 58.736 52.381 0.00 0.00 0.00 3.69
2529 4787 2.235898 GCTGATCCATCCATACCTCCTC 59.764 54.545 0.00 0.00 0.00 3.71
2530 4788 3.788933 CTGATCCATCCATACCTCCTCT 58.211 50.000 0.00 0.00 0.00 3.69
2531 4789 3.514539 TGATCCATCCATACCTCCTCTG 58.485 50.000 0.00 0.00 0.00 3.35
2532 4790 3.116590 TGATCCATCCATACCTCCTCTGT 60.117 47.826 0.00 0.00 0.00 3.41
2533 4791 2.964209 TCCATCCATACCTCCTCTGTC 58.036 52.381 0.00 0.00 0.00 3.51
2534 4792 1.974236 CCATCCATACCTCCTCTGTCC 59.026 57.143 0.00 0.00 0.00 4.02
2535 4793 2.427002 CCATCCATACCTCCTCTGTCCT 60.427 54.545 0.00 0.00 0.00 3.85
2536 4794 3.312890 CATCCATACCTCCTCTGTCCTT 58.687 50.000 0.00 0.00 0.00 3.36
2537 4795 3.033659 TCCATACCTCCTCTGTCCTTC 57.966 52.381 0.00 0.00 0.00 3.46
2538 4796 1.683917 CCATACCTCCTCTGTCCTTCG 59.316 57.143 0.00 0.00 0.00 3.79
2539 4797 2.656002 CATACCTCCTCTGTCCTTCGA 58.344 52.381 0.00 0.00 0.00 3.71
2540 4798 3.226777 CATACCTCCTCTGTCCTTCGAT 58.773 50.000 0.00 0.00 0.00 3.59
2541 4799 4.399219 CATACCTCCTCTGTCCTTCGATA 58.601 47.826 0.00 0.00 0.00 2.92
2542 4800 3.383698 ACCTCCTCTGTCCTTCGATAA 57.616 47.619 0.00 0.00 0.00 1.75
2543 4801 3.292460 ACCTCCTCTGTCCTTCGATAAG 58.708 50.000 0.00 0.00 0.00 1.73
2544 4802 3.053544 ACCTCCTCTGTCCTTCGATAAGA 60.054 47.826 0.00 0.00 34.37 2.10
2545 4803 3.954904 CCTCCTCTGTCCTTCGATAAGAA 59.045 47.826 0.00 0.00 34.37 2.52
2546 4804 4.402793 CCTCCTCTGTCCTTCGATAAGAAA 59.597 45.833 0.00 0.00 38.57 2.52
2547 4805 5.069781 CCTCCTCTGTCCTTCGATAAGAAAT 59.930 44.000 0.00 0.00 38.57 2.17
2548 4806 6.150396 TCCTCTGTCCTTCGATAAGAAATC 57.850 41.667 0.00 0.00 38.57 2.17
2549 4807 5.894393 TCCTCTGTCCTTCGATAAGAAATCT 59.106 40.000 0.00 0.00 38.57 2.40
2550 4808 5.982516 CCTCTGTCCTTCGATAAGAAATCTG 59.017 44.000 0.00 0.00 38.57 2.90
2551 4809 6.183360 CCTCTGTCCTTCGATAAGAAATCTGA 60.183 42.308 0.00 0.00 38.57 3.27
2552 4810 7.170393 TCTGTCCTTCGATAAGAAATCTGAA 57.830 36.000 0.00 0.00 38.57 3.02
2553 4811 7.611770 TCTGTCCTTCGATAAGAAATCTGAAA 58.388 34.615 0.00 0.00 38.57 2.69
2554 4812 7.545965 TCTGTCCTTCGATAAGAAATCTGAAAC 59.454 37.037 0.00 0.00 38.57 2.78
2555 4813 7.386851 TGTCCTTCGATAAGAAATCTGAAACT 58.613 34.615 0.00 0.00 38.57 2.66
2556 4814 8.528643 TGTCCTTCGATAAGAAATCTGAAACTA 58.471 33.333 0.00 0.00 38.57 2.24
2557 4815 8.809478 GTCCTTCGATAAGAAATCTGAAACTAC 58.191 37.037 0.00 0.00 38.57 2.73
2558 4816 8.528643 TCCTTCGATAAGAAATCTGAAACTACA 58.471 33.333 0.00 0.00 38.57 2.74
2559 4817 8.812329 CCTTCGATAAGAAATCTGAAACTACAG 58.188 37.037 0.00 0.00 38.57 2.74
2560 4818 7.757097 TCGATAAGAAATCTGAAACTACAGC 57.243 36.000 0.00 0.00 37.75 4.40
2561 4819 7.548097 TCGATAAGAAATCTGAAACTACAGCT 58.452 34.615 0.00 0.00 37.75 4.24
2562 4820 7.489435 TCGATAAGAAATCTGAAACTACAGCTG 59.511 37.037 13.48 13.48 37.75 4.24
2563 4821 7.489435 CGATAAGAAATCTGAAACTACAGCTGA 59.511 37.037 23.35 2.95 37.75 4.26
2564 4822 9.323985 GATAAGAAATCTGAAACTACAGCTGAT 57.676 33.333 23.35 7.41 37.75 2.90
2565 4823 7.608308 AAGAAATCTGAAACTACAGCTGATC 57.392 36.000 23.35 10.54 37.75 2.92
2566 4824 6.945218 AGAAATCTGAAACTACAGCTGATCT 58.055 36.000 23.35 0.00 37.75 2.75
2567 4825 7.393216 AGAAATCTGAAACTACAGCTGATCTT 58.607 34.615 23.35 7.75 37.75 2.40
2568 4826 7.882271 AGAAATCTGAAACTACAGCTGATCTTT 59.118 33.333 23.35 13.27 37.75 2.52
2569 4827 9.155975 GAAATCTGAAACTACAGCTGATCTTTA 57.844 33.333 23.35 0.06 37.75 1.85
2570 4828 8.715191 AATCTGAAACTACAGCTGATCTTTAG 57.285 34.615 23.35 13.53 37.75 1.85
2571 4829 7.233389 TCTGAAACTACAGCTGATCTTTAGT 57.767 36.000 23.35 14.22 39.34 2.24
2572 4830 7.671302 TCTGAAACTACAGCTGATCTTTAGTT 58.329 34.615 23.35 19.24 45.37 2.24
2573 4831 7.600375 TCTGAAACTACAGCTGATCTTTAGTTG 59.400 37.037 23.35 11.20 43.68 3.16
2574 4832 7.217200 TGAAACTACAGCTGATCTTTAGTTGT 58.783 34.615 23.35 12.88 43.68 3.32
2575 4833 7.715249 TGAAACTACAGCTGATCTTTAGTTGTT 59.285 33.333 23.35 9.11 43.68 2.83
2576 4834 9.204570 GAAACTACAGCTGATCTTTAGTTGTTA 57.795 33.333 23.35 0.00 43.68 2.41
2577 4835 8.535690 AACTACAGCTGATCTTTAGTTGTTAC 57.464 34.615 23.35 0.00 43.16 2.50
2578 4836 7.897864 ACTACAGCTGATCTTTAGTTGTTACT 58.102 34.615 23.35 0.00 39.72 2.24
2579 4837 8.368668 ACTACAGCTGATCTTTAGTTGTTACTT 58.631 33.333 23.35 0.00 39.72 2.24
2580 4838 9.209175 CTACAGCTGATCTTTAGTTGTTACTTT 57.791 33.333 23.35 0.00 39.72 2.66
2581 4839 8.451908 ACAGCTGATCTTTAGTTGTTACTTTT 57.548 30.769 23.35 0.00 36.39 2.27
2582 4840 8.345565 ACAGCTGATCTTTAGTTGTTACTTTTG 58.654 33.333 23.35 0.00 36.39 2.44
2583 4841 8.559536 CAGCTGATCTTTAGTTGTTACTTTTGA 58.440 33.333 8.42 0.00 35.78 2.69
2584 4842 8.778358 AGCTGATCTTTAGTTGTTACTTTTGAG 58.222 33.333 0.00 0.00 35.78 3.02
2585 4843 8.774586 GCTGATCTTTAGTTGTTACTTTTGAGA 58.225 33.333 0.00 0.00 35.78 3.27
2590 4848 8.836413 TCTTTAGTTGTTACTTTTGAGATGTGG 58.164 33.333 0.00 0.00 35.78 4.17
2591 4849 8.514330 TTTAGTTGTTACTTTTGAGATGTGGT 57.486 30.769 0.00 0.00 35.78 4.16
2592 4850 8.514330 TTAGTTGTTACTTTTGAGATGTGGTT 57.486 30.769 0.00 0.00 35.78 3.67
2593 4851 6.795399 AGTTGTTACTTTTGAGATGTGGTTG 58.205 36.000 0.00 0.00 0.00 3.77
2594 4852 6.601613 AGTTGTTACTTTTGAGATGTGGTTGA 59.398 34.615 0.00 0.00 0.00 3.18
2595 4853 7.285401 AGTTGTTACTTTTGAGATGTGGTTGAT 59.715 33.333 0.00 0.00 0.00 2.57
2596 4854 6.969366 TGTTACTTTTGAGATGTGGTTGATG 58.031 36.000 0.00 0.00 0.00 3.07
2597 4855 6.545666 TGTTACTTTTGAGATGTGGTTGATGT 59.454 34.615 0.00 0.00 0.00 3.06
2598 4856 5.443185 ACTTTTGAGATGTGGTTGATGTG 57.557 39.130 0.00 0.00 0.00 3.21
2599 4857 5.132502 ACTTTTGAGATGTGGTTGATGTGA 58.867 37.500 0.00 0.00 0.00 3.58
2600 4858 5.240183 ACTTTTGAGATGTGGTTGATGTGAG 59.760 40.000 0.00 0.00 0.00 3.51
2601 4859 4.622260 TTGAGATGTGGTTGATGTGAGA 57.378 40.909 0.00 0.00 0.00 3.27
2602 4860 4.831674 TGAGATGTGGTTGATGTGAGAT 57.168 40.909 0.00 0.00 0.00 2.75
2603 4861 5.169992 TGAGATGTGGTTGATGTGAGATT 57.830 39.130 0.00 0.00 0.00 2.40
2604 4862 6.298441 TGAGATGTGGTTGATGTGAGATTA 57.702 37.500 0.00 0.00 0.00 1.75
2605 4863 6.710278 TGAGATGTGGTTGATGTGAGATTAA 58.290 36.000 0.00 0.00 0.00 1.40
2606 4864 7.167535 TGAGATGTGGTTGATGTGAGATTAAA 58.832 34.615 0.00 0.00 0.00 1.52
2607 4865 7.335171 TGAGATGTGGTTGATGTGAGATTAAAG 59.665 37.037 0.00 0.00 0.00 1.85
2608 4866 7.170965 AGATGTGGTTGATGTGAGATTAAAGT 58.829 34.615 0.00 0.00 0.00 2.66
2609 4867 8.321353 AGATGTGGTTGATGTGAGATTAAAGTA 58.679 33.333 0.00 0.00 0.00 2.24
2610 4868 8.862325 ATGTGGTTGATGTGAGATTAAAGTAA 57.138 30.769 0.00 0.00 0.00 2.24
2611 4869 8.684386 TGTGGTTGATGTGAGATTAAAGTAAA 57.316 30.769 0.00 0.00 0.00 2.01
2612 4870 8.783093 TGTGGTTGATGTGAGATTAAAGTAAAG 58.217 33.333 0.00 0.00 0.00 1.85
2613 4871 8.999431 GTGGTTGATGTGAGATTAAAGTAAAGA 58.001 33.333 0.00 0.00 0.00 2.52
2614 4872 9.567776 TGGTTGATGTGAGATTAAAGTAAAGAA 57.432 29.630 0.00 0.00 0.00 2.52
2630 4888 9.653287 AAAGTAAAGAAAACTAAGCAAAAGCTT 57.347 25.926 7.91 7.91 0.00 3.74
2646 4904 9.730705 AGCAAAAGCTTAGATATATGCTTATCA 57.269 29.630 17.72 0.00 43.80 2.15
2647 4905 9.766277 GCAAAAGCTTAGATATATGCTTATCAC 57.234 33.333 17.72 7.37 43.80 3.06
2651 4909 9.664332 AAGCTTAGATATATGCTTATCACCAAG 57.336 33.333 16.35 0.00 42.94 3.61
2652 4910 9.040259 AGCTTAGATATATGCTTATCACCAAGA 57.960 33.333 2.11 0.00 32.10 3.02
2653 4911 9.658799 GCTTAGATATATGCTTATCACCAAGAA 57.341 33.333 0.00 0.00 32.10 2.52
2660 4918 4.870363 TGCTTATCACCAAGAAAAGTTGC 58.130 39.130 0.00 0.00 0.00 4.17
2661 4919 3.914364 GCTTATCACCAAGAAAAGTTGCG 59.086 43.478 0.00 0.00 0.00 4.85
2662 4920 4.556699 GCTTATCACCAAGAAAAGTTGCGT 60.557 41.667 0.00 0.00 0.00 5.24
2663 4921 5.508200 TTATCACCAAGAAAAGTTGCGTT 57.492 34.783 0.00 0.00 0.00 4.84
2664 4922 3.859411 TCACCAAGAAAAGTTGCGTTT 57.141 38.095 0.00 0.00 0.00 3.60
2665 4923 3.765026 TCACCAAGAAAAGTTGCGTTTC 58.235 40.909 0.52 0.52 35.60 2.78
2666 4924 3.442273 TCACCAAGAAAAGTTGCGTTTCT 59.558 39.130 4.66 4.66 45.14 2.52
2667 4925 3.791353 CACCAAGAAAAGTTGCGTTTCTC 59.209 43.478 9.66 0.00 43.00 2.87
2668 4926 3.181490 ACCAAGAAAAGTTGCGTTTCTCC 60.181 43.478 9.66 0.00 43.00 3.71
2669 4927 3.066760 CCAAGAAAAGTTGCGTTTCTCCT 59.933 43.478 9.66 0.00 43.00 3.69
2670 4928 4.440112 CCAAGAAAAGTTGCGTTTCTCCTT 60.440 41.667 9.66 0.00 43.00 3.36
2671 4929 4.292977 AGAAAAGTTGCGTTTCTCCTTG 57.707 40.909 4.66 0.00 40.50 3.61
2672 4930 3.945285 AGAAAAGTTGCGTTTCTCCTTGA 59.055 39.130 4.66 0.00 40.50 3.02
2673 4931 4.580580 AGAAAAGTTGCGTTTCTCCTTGAT 59.419 37.500 4.66 0.00 40.50 2.57
2674 4932 4.489679 AAAGTTGCGTTTCTCCTTGATC 57.510 40.909 0.00 0.00 0.00 2.92
2675 4933 3.126001 AGTTGCGTTTCTCCTTGATCA 57.874 42.857 0.00 0.00 0.00 2.92
2676 4934 3.070018 AGTTGCGTTTCTCCTTGATCAG 58.930 45.455 0.00 0.00 0.00 2.90
2677 4935 3.067106 GTTGCGTTTCTCCTTGATCAGA 58.933 45.455 0.00 0.00 0.00 3.27
2678 4936 3.401033 TGCGTTTCTCCTTGATCAGAA 57.599 42.857 0.00 0.00 0.00 3.02
2679 4937 3.738982 TGCGTTTCTCCTTGATCAGAAA 58.261 40.909 4.26 4.26 34.17 2.52
2680 4938 4.326826 TGCGTTTCTCCTTGATCAGAAAT 58.673 39.130 10.10 0.00 34.17 2.17
2681 4939 5.487433 TGCGTTTCTCCTTGATCAGAAATA 58.513 37.500 10.10 0.73 34.17 1.40
2682 4940 5.351465 TGCGTTTCTCCTTGATCAGAAATAC 59.649 40.000 10.10 7.07 34.17 1.89
2683 4941 5.351465 GCGTTTCTCCTTGATCAGAAATACA 59.649 40.000 10.10 0.00 34.17 2.29
2684 4942 6.456181 GCGTTTCTCCTTGATCAGAAATACAG 60.456 42.308 10.10 0.00 34.17 2.74
2685 4943 6.036517 CGTTTCTCCTTGATCAGAAATACAGG 59.963 42.308 10.10 6.16 34.17 4.00
2686 4944 6.874278 TTCTCCTTGATCAGAAATACAGGA 57.126 37.500 9.22 9.22 0.00 3.86
2687 4945 6.874278 TCTCCTTGATCAGAAATACAGGAA 57.126 37.500 10.49 1.59 0.00 3.36
2688 4946 7.257790 TCTCCTTGATCAGAAATACAGGAAA 57.742 36.000 10.49 0.00 0.00 3.13
2689 4947 7.334090 TCTCCTTGATCAGAAATACAGGAAAG 58.666 38.462 10.49 2.17 0.00 2.62
2690 4948 7.180946 TCTCCTTGATCAGAAATACAGGAAAGA 59.819 37.037 10.49 4.13 0.00 2.52
2691 4949 7.865820 TCCTTGATCAGAAATACAGGAAAGAT 58.134 34.615 7.46 0.00 0.00 2.40
2692 4950 8.331740 TCCTTGATCAGAAATACAGGAAAGATT 58.668 33.333 7.46 0.00 0.00 2.40
2693 4951 8.404000 CCTTGATCAGAAATACAGGAAAGATTG 58.596 37.037 1.70 0.00 0.00 2.67
2694 4952 7.325660 TGATCAGAAATACAGGAAAGATTGC 57.674 36.000 0.00 0.00 0.00 3.56
2695 4953 7.114754 TGATCAGAAATACAGGAAAGATTGCT 58.885 34.615 0.00 0.00 0.00 3.91
2702 4960 2.996631 CAGGAAAGATTGCTGCTAGGT 58.003 47.619 0.00 0.00 42.18 3.08
2703 4961 2.681848 CAGGAAAGATTGCTGCTAGGTG 59.318 50.000 0.00 0.00 42.18 4.00
2704 4962 2.307098 AGGAAAGATTGCTGCTAGGTGT 59.693 45.455 0.00 0.00 0.00 4.16
2705 4963 2.421424 GGAAAGATTGCTGCTAGGTGTG 59.579 50.000 0.00 0.00 0.00 3.82
2706 4964 3.338249 GAAAGATTGCTGCTAGGTGTGA 58.662 45.455 0.00 0.00 0.00 3.58
2707 4965 2.687700 AGATTGCTGCTAGGTGTGAG 57.312 50.000 0.00 0.00 0.00 3.51
2708 4966 1.905215 AGATTGCTGCTAGGTGTGAGT 59.095 47.619 0.00 0.00 0.00 3.41
2709 4967 3.099905 AGATTGCTGCTAGGTGTGAGTA 58.900 45.455 0.00 0.00 0.00 2.59
2710 4968 3.131933 AGATTGCTGCTAGGTGTGAGTAG 59.868 47.826 0.00 0.00 0.00 2.57
2711 4969 1.186200 TGCTGCTAGGTGTGAGTAGG 58.814 55.000 0.00 0.00 0.00 3.18
2712 4970 1.187087 GCTGCTAGGTGTGAGTAGGT 58.813 55.000 0.00 0.00 0.00 3.08
2713 4971 1.134965 GCTGCTAGGTGTGAGTAGGTG 60.135 57.143 0.00 0.00 0.00 4.00
2714 4972 0.895530 TGCTAGGTGTGAGTAGGTGC 59.104 55.000 0.00 0.00 0.00 5.01
2715 4973 0.895530 GCTAGGTGTGAGTAGGTGCA 59.104 55.000 0.00 0.00 0.00 4.57
2716 4974 1.134965 GCTAGGTGTGAGTAGGTGCAG 60.135 57.143 0.00 0.00 0.00 4.41
2717 4975 1.478510 CTAGGTGTGAGTAGGTGCAGG 59.521 57.143 0.00 0.00 0.00 4.85
2718 4976 0.471971 AGGTGTGAGTAGGTGCAGGT 60.472 55.000 0.00 0.00 0.00 4.00
2719 4977 0.037232 GGTGTGAGTAGGTGCAGGTC 60.037 60.000 0.00 0.00 0.00 3.85
2720 4978 0.969894 GTGTGAGTAGGTGCAGGTCT 59.030 55.000 0.00 0.00 0.00 3.85
2721 4979 0.969149 TGTGAGTAGGTGCAGGTCTG 59.031 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
824 842 0.920763 TCGTGGGGGAGGAGGTAGTA 60.921 60.000 0.00 0.00 0.00 1.82
825 843 1.807771 TTCGTGGGGGAGGAGGTAGT 61.808 60.000 0.00 0.00 0.00 2.73
837 855 2.744202 CAAACTCCTCATCTTTCGTGGG 59.256 50.000 0.00 0.00 0.00 4.61
878 896 8.984764 GGCGCCGTATTTATTATATTATCATCA 58.015 33.333 12.58 0.00 0.00 3.07
879 897 8.160342 CGGCGCCGTATTTATTATATTATCATC 58.840 37.037 39.71 0.00 34.35 2.92
880 898 7.117236 CCGGCGCCGTATTTATTATATTATCAT 59.883 37.037 43.12 0.00 37.81 2.45
1128 1152 0.031449 GAGATCGGACTAGCACCTGC 59.969 60.000 5.27 0.00 42.49 4.85
1135 1159 3.150767 AGGGATTTCGAGATCGGACTAG 58.849 50.000 9.60 0.00 40.29 2.57
1213 1414 4.970662 AGTTTGGCACACATCATGTATC 57.029 40.909 6.55 0.00 40.64 2.24
1366 3132 3.186409 GCATGAGCTGAACGTTTGAGTAA 59.814 43.478 0.46 0.00 37.91 2.24
1378 3144 1.138464 GAGAGATGGTGCATGAGCTGA 59.862 52.381 0.00 0.00 42.74 4.26
1588 3364 7.341512 CACATCCAGAGAATATAGAGGCTATGA 59.658 40.741 0.00 0.00 0.00 2.15
1730 3512 1.982958 GACAACCACTTCTTCCCCCTA 59.017 52.381 0.00 0.00 0.00 3.53
1759 3541 7.936304 GTCCATTGACAGTCTTGAGTGACAAG 61.936 46.154 20.82 15.00 46.50 3.16
1828 3611 1.600636 CTTTGGCAACCTGAGGCGA 60.601 57.895 0.00 0.00 0.00 5.54
1829 3612 1.856265 GACTTTGGCAACCTGAGGCG 61.856 60.000 0.00 0.00 0.00 5.52
1830 3613 0.538287 AGACTTTGGCAACCTGAGGC 60.538 55.000 0.00 0.00 0.00 4.70
1831 3614 1.610522 CAAGACTTTGGCAACCTGAGG 59.389 52.381 0.00 0.00 0.00 3.86
1832 3615 2.033801 CACAAGACTTTGGCAACCTGAG 59.966 50.000 0.00 0.00 38.66 3.35
1833 3616 2.023673 CACAAGACTTTGGCAACCTGA 58.976 47.619 0.00 0.00 38.66 3.86
1834 3617 1.067516 CCACAAGACTTTGGCAACCTG 59.932 52.381 0.00 0.00 38.66 4.00
1835 3618 1.064017 TCCACAAGACTTTGGCAACCT 60.064 47.619 0.00 0.00 38.66 3.50
1836 3619 1.338020 CTCCACAAGACTTTGGCAACC 59.662 52.381 0.00 0.00 38.66 3.77
1837 3620 2.297701 TCTCCACAAGACTTTGGCAAC 58.702 47.619 0.00 0.00 38.66 4.17
1838 3621 2.727123 TCTCCACAAGACTTTGGCAA 57.273 45.000 0.00 0.00 38.66 4.52
1839 3622 2.727123 TTCTCCACAAGACTTTGGCA 57.273 45.000 10.06 0.00 38.66 4.92
1840 3623 3.305608 CCAATTCTCCACAAGACTTTGGC 60.306 47.826 10.06 0.00 39.16 4.52
1841 3624 3.891366 ACCAATTCTCCACAAGACTTTGG 59.109 43.478 11.59 11.59 45.19 3.28
1842 3625 4.580167 TGACCAATTCTCCACAAGACTTTG 59.420 41.667 0.00 0.00 40.24 2.77
1843 3626 4.580580 GTGACCAATTCTCCACAAGACTTT 59.419 41.667 0.00 0.00 32.27 2.66
1844 3627 4.137543 GTGACCAATTCTCCACAAGACTT 58.862 43.478 0.00 0.00 32.27 3.01
1845 3628 3.392616 AGTGACCAATTCTCCACAAGACT 59.607 43.478 0.00 0.00 32.27 3.24
1846 3629 3.744660 AGTGACCAATTCTCCACAAGAC 58.255 45.455 0.00 0.00 32.27 3.01
1847 3630 3.554960 CGAGTGACCAATTCTCCACAAGA 60.555 47.826 0.00 0.00 32.35 3.02
1848 3631 2.738846 CGAGTGACCAATTCTCCACAAG 59.261 50.000 0.00 0.00 32.35 3.16
1849 3632 2.766313 CGAGTGACCAATTCTCCACAA 58.234 47.619 0.00 0.00 32.35 3.33
1850 3633 1.608025 GCGAGTGACCAATTCTCCACA 60.608 52.381 0.00 0.00 32.35 4.17
1851 3634 1.079503 GCGAGTGACCAATTCTCCAC 58.920 55.000 0.00 0.00 0.00 4.02
1852 3635 0.036388 GGCGAGTGACCAATTCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
1853 3636 0.250513 AGGCGAGTGACCAATTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
1854 3637 1.646189 GAGGCGAGTGACCAATTCTC 58.354 55.000 0.00 0.00 0.00 2.87
1855 3638 0.250513 GGAGGCGAGTGACCAATTCT 59.749 55.000 0.00 0.00 0.00 2.40
1856 3639 0.744771 GGGAGGCGAGTGACCAATTC 60.745 60.000 0.00 0.00 0.00 2.17
1857 3640 1.201429 AGGGAGGCGAGTGACCAATT 61.201 55.000 0.00 0.00 0.00 2.32
1858 3641 1.201429 AAGGGAGGCGAGTGACCAAT 61.201 55.000 0.00 0.00 0.00 3.16
1859 3642 1.415672 AAAGGGAGGCGAGTGACCAA 61.416 55.000 0.00 0.00 0.00 3.67
1860 3643 1.827399 GAAAGGGAGGCGAGTGACCA 61.827 60.000 0.00 0.00 0.00 4.02
1861 3644 1.079057 GAAAGGGAGGCGAGTGACC 60.079 63.158 0.00 0.00 0.00 4.02
1862 3645 0.390472 CAGAAAGGGAGGCGAGTGAC 60.390 60.000 0.00 0.00 0.00 3.67
1863 3646 0.832135 ACAGAAAGGGAGGCGAGTGA 60.832 55.000 0.00 0.00 0.00 3.41
1864 3647 0.035458 AACAGAAAGGGAGGCGAGTG 59.965 55.000 0.00 0.00 0.00 3.51
1865 3648 0.765510 AAACAGAAAGGGAGGCGAGT 59.234 50.000 0.00 0.00 0.00 4.18
1866 3649 1.443802 GAAACAGAAAGGGAGGCGAG 58.556 55.000 0.00 0.00 0.00 5.03
1934 3717 8.291191 TGGACATGCAAATCTCACAAAATATA 57.709 30.769 0.00 0.00 0.00 0.86
1935 3718 7.172868 TGGACATGCAAATCTCACAAAATAT 57.827 32.000 0.00 0.00 0.00 1.28
1943 3726 4.795469 ACCATATGGACATGCAAATCTCA 58.205 39.130 28.77 0.00 38.94 3.27
1967 3750 6.699575 AAATAATAATGCAGAGACCACCAC 57.300 37.500 0.00 0.00 0.00 4.16
2123 3906 6.093219 ACATCAGCTCAAATGTACATTGAGAC 59.907 38.462 30.97 24.95 34.42 3.36
2132 3915 8.565896 AAAGTAATGACATCAGCTCAAATGTA 57.434 30.769 6.01 0.00 36.28 2.29
2138 3921 5.880332 GGGTTAAAGTAATGACATCAGCTCA 59.120 40.000 0.00 0.00 0.00 4.26
2160 3943 4.196626 TGTACGGATTACTTTGACAGGG 57.803 45.455 0.00 0.00 0.00 4.45
2161 3944 6.737254 ATTTGTACGGATTACTTTGACAGG 57.263 37.500 0.00 0.00 0.00 4.00
2220 4007 1.986882 AGCTTCTCCAACCAAAGTGG 58.013 50.000 0.00 0.00 45.02 4.00
2245 4032 8.350722 TCGAACTTCCATGTTACAGATATAGAC 58.649 37.037 0.00 0.00 0.00 2.59
2259 4046 5.149273 CAAAGACATTGTCGAACTTCCATG 58.851 41.667 11.01 0.00 37.67 3.66
2323 4581 2.054232 TCGTCCTGGAGGTGATACTC 57.946 55.000 15.40 0.00 36.76 2.59
2324 4582 2.757894 ATCGTCCTGGAGGTGATACT 57.242 50.000 15.40 0.00 36.34 2.12
2325 4583 4.079970 TCATATCGTCCTGGAGGTGATAC 58.920 47.826 15.40 0.00 36.89 2.24
2326 4584 4.079970 GTCATATCGTCCTGGAGGTGATA 58.920 47.826 15.40 13.93 37.71 2.15
2327 4585 2.894126 GTCATATCGTCCTGGAGGTGAT 59.106 50.000 15.40 12.38 36.16 3.06
2328 4586 2.091830 AGTCATATCGTCCTGGAGGTGA 60.092 50.000 15.40 9.64 36.34 4.02
2329 4587 2.294791 GAGTCATATCGTCCTGGAGGTG 59.705 54.545 15.40 7.57 36.34 4.00
2330 4588 2.588620 GAGTCATATCGTCCTGGAGGT 58.411 52.381 15.40 6.52 36.34 3.85
2331 4589 1.889829 GGAGTCATATCGTCCTGGAGG 59.110 57.143 10.09 10.09 0.00 4.30
2332 4590 2.870175 AGGAGTCATATCGTCCTGGAG 58.130 52.381 0.00 0.00 39.36 3.86
2333 4591 3.314307 AAGGAGTCATATCGTCCTGGA 57.686 47.619 0.00 0.00 39.97 3.86
2334 4592 4.372656 GAAAAGGAGTCATATCGTCCTGG 58.627 47.826 0.00 0.00 39.97 4.45
2335 4593 4.045104 CGAAAAGGAGTCATATCGTCCTG 58.955 47.826 5.13 0.00 39.97 3.86
2336 4594 3.491104 GCGAAAAGGAGTCATATCGTCCT 60.491 47.826 12.53 0.00 42.87 3.85
2337 4595 2.795470 GCGAAAAGGAGTCATATCGTCC 59.205 50.000 12.53 0.00 33.18 4.79
2338 4596 3.444916 TGCGAAAAGGAGTCATATCGTC 58.555 45.455 12.53 7.27 33.18 4.20
2339 4597 3.520290 TGCGAAAAGGAGTCATATCGT 57.480 42.857 12.53 0.00 33.18 3.73
2340 4598 4.051237 TGATGCGAAAAGGAGTCATATCG 58.949 43.478 8.14 8.14 0.00 2.92
2341 4599 4.084118 GCTGATGCGAAAAGGAGTCATATC 60.084 45.833 0.00 0.00 0.00 1.63
2342 4600 3.812053 GCTGATGCGAAAAGGAGTCATAT 59.188 43.478 0.00 0.00 0.00 1.78
2343 4601 3.198068 GCTGATGCGAAAAGGAGTCATA 58.802 45.455 0.00 0.00 0.00 2.15
2344 4602 2.012673 GCTGATGCGAAAAGGAGTCAT 58.987 47.619 0.00 0.00 0.00 3.06
2345 4603 1.270785 TGCTGATGCGAAAAGGAGTCA 60.271 47.619 0.00 0.00 43.34 3.41
2346 4604 1.442769 TGCTGATGCGAAAAGGAGTC 58.557 50.000 0.00 0.00 43.34 3.36
2347 4605 1.808945 CTTGCTGATGCGAAAAGGAGT 59.191 47.619 0.00 0.00 43.34 3.85
2348 4606 1.467035 GCTTGCTGATGCGAAAAGGAG 60.467 52.381 0.00 0.00 43.34 3.69
2349 4607 0.523072 GCTTGCTGATGCGAAAAGGA 59.477 50.000 0.00 0.00 43.34 3.36
2350 4608 3.025866 GCTTGCTGATGCGAAAAGG 57.974 52.632 0.00 0.00 43.34 3.11
2357 4615 3.910767 GCTAATAAATCGCTTGCTGATGC 59.089 43.478 0.00 0.00 40.20 3.91
2358 4616 5.354054 AGCTAATAAATCGCTTGCTGATG 57.646 39.130 0.00 0.00 0.00 3.07
2359 4617 4.151335 CGAGCTAATAAATCGCTTGCTGAT 59.849 41.667 0.00 0.00 33.47 2.90
2360 4618 3.490896 CGAGCTAATAAATCGCTTGCTGA 59.509 43.478 0.00 0.00 33.47 4.26
2361 4619 3.792294 CGAGCTAATAAATCGCTTGCTG 58.208 45.455 0.00 0.00 33.47 4.41
2368 4626 1.270625 TGGGGGCGAGCTAATAAATCG 60.271 52.381 0.00 0.00 39.40 3.34
2369 4627 2.561478 TGGGGGCGAGCTAATAAATC 57.439 50.000 0.00 0.00 0.00 2.17
2370 4628 2.375174 TCATGGGGGCGAGCTAATAAAT 59.625 45.455 0.00 0.00 0.00 1.40
2371 4629 1.771854 TCATGGGGGCGAGCTAATAAA 59.228 47.619 0.00 0.00 0.00 1.40
2372 4630 1.071699 GTCATGGGGGCGAGCTAATAA 59.928 52.381 0.00 0.00 0.00 1.40
2373 4631 0.685097 GTCATGGGGGCGAGCTAATA 59.315 55.000 0.00 0.00 0.00 0.98
2374 4632 1.344953 TGTCATGGGGGCGAGCTAAT 61.345 55.000 0.00 0.00 0.00 1.73
2375 4633 1.558167 TTGTCATGGGGGCGAGCTAA 61.558 55.000 0.00 0.00 0.00 3.09
2376 4634 1.992834 TTGTCATGGGGGCGAGCTA 60.993 57.895 0.00 0.00 0.00 3.32
2377 4635 3.329889 TTGTCATGGGGGCGAGCT 61.330 61.111 0.00 0.00 0.00 4.09
2378 4636 3.134127 GTTGTCATGGGGGCGAGC 61.134 66.667 0.00 0.00 0.00 5.03
2379 4637 1.746615 CTGTTGTCATGGGGGCGAG 60.747 63.158 0.00 0.00 0.00 5.03
2380 4638 1.561769 ATCTGTTGTCATGGGGGCGA 61.562 55.000 0.00 0.00 0.00 5.54
2381 4639 1.077501 ATCTGTTGTCATGGGGGCG 60.078 57.895 0.00 0.00 0.00 6.13
2382 4640 1.039233 CCATCTGTTGTCATGGGGGC 61.039 60.000 0.00 0.00 0.00 5.80
2383 4641 0.332632 ACCATCTGTTGTCATGGGGG 59.667 55.000 3.10 0.00 38.45 5.40
2384 4642 2.220653 AACCATCTGTTGTCATGGGG 57.779 50.000 3.10 0.00 38.45 4.96
2403 4661 4.823442 GCACCCAATACATTGATCAGATCA 59.177 41.667 9.21 9.21 40.14 2.92
2404 4662 5.068636 AGCACCCAATACATTGATCAGATC 58.931 41.667 3.11 3.11 40.14 2.75
2405 4663 5.057843 AGCACCCAATACATTGATCAGAT 57.942 39.130 3.48 0.00 40.14 2.90
2406 4664 4.508551 AGCACCCAATACATTGATCAGA 57.491 40.909 3.48 0.00 40.14 3.27
2407 4665 6.889301 ATAAGCACCCAATACATTGATCAG 57.111 37.500 3.48 0.00 40.14 2.90
2408 4666 6.017192 CGAATAAGCACCCAATACATTGATCA 60.017 38.462 3.48 0.00 40.14 2.92
2409 4667 6.017109 ACGAATAAGCACCCAATACATTGATC 60.017 38.462 3.48 0.00 40.14 2.92
2410 4668 5.827797 ACGAATAAGCACCCAATACATTGAT 59.172 36.000 3.48 0.00 40.14 2.57
2411 4669 5.189928 ACGAATAAGCACCCAATACATTGA 58.810 37.500 3.48 0.00 40.14 2.57
2412 4670 5.499139 ACGAATAAGCACCCAATACATTG 57.501 39.130 0.00 0.00 37.52 2.82
2413 4671 6.524101 AAACGAATAAGCACCCAATACATT 57.476 33.333 0.00 0.00 0.00 2.71
2414 4672 6.524101 AAAACGAATAAGCACCCAATACAT 57.476 33.333 0.00 0.00 0.00 2.29
2415 4673 5.968528 AAAACGAATAAGCACCCAATACA 57.031 34.783 0.00 0.00 0.00 2.29
2471 4729 9.603921 CCTGATTCCAATTATTGTAAAAAGCAT 57.396 29.630 4.15 0.00 0.00 3.79
2472 4730 8.811017 TCCTGATTCCAATTATTGTAAAAAGCA 58.189 29.630 4.15 1.92 0.00 3.91
2473 4731 9.651913 TTCCTGATTCCAATTATTGTAAAAAGC 57.348 29.630 4.15 0.00 0.00 3.51
2477 4735 9.527157 TCAGTTCCTGATTCCAATTATTGTAAA 57.473 29.630 4.15 0.00 35.39 2.01
2478 4736 9.177608 CTCAGTTCCTGATTCCAATTATTGTAA 57.822 33.333 4.15 0.00 39.92 2.41
2479 4737 7.775093 CCTCAGTTCCTGATTCCAATTATTGTA 59.225 37.037 4.15 0.00 39.92 2.41
2480 4738 6.604795 CCTCAGTTCCTGATTCCAATTATTGT 59.395 38.462 4.15 0.00 39.92 2.71
2481 4739 6.460676 GCCTCAGTTCCTGATTCCAATTATTG 60.461 42.308 0.00 0.00 39.92 1.90
2482 4740 5.595952 GCCTCAGTTCCTGATTCCAATTATT 59.404 40.000 0.00 0.00 39.92 1.40
2483 4741 5.136105 GCCTCAGTTCCTGATTCCAATTAT 58.864 41.667 0.00 0.00 39.92 1.28
2484 4742 4.526970 GCCTCAGTTCCTGATTCCAATTA 58.473 43.478 0.00 0.00 39.92 1.40
2485 4743 3.359950 GCCTCAGTTCCTGATTCCAATT 58.640 45.455 0.00 0.00 39.92 2.32
2486 4744 2.681976 CGCCTCAGTTCCTGATTCCAAT 60.682 50.000 0.00 0.00 39.92 3.16
2487 4745 1.339055 CGCCTCAGTTCCTGATTCCAA 60.339 52.381 0.00 0.00 39.92 3.53
2488 4746 0.250234 CGCCTCAGTTCCTGATTCCA 59.750 55.000 0.00 0.00 39.92 3.53
2489 4747 0.462759 CCGCCTCAGTTCCTGATTCC 60.463 60.000 0.00 0.00 39.92 3.01
2490 4748 1.092345 GCCGCCTCAGTTCCTGATTC 61.092 60.000 0.00 0.00 39.92 2.52
2491 4749 1.078143 GCCGCCTCAGTTCCTGATT 60.078 57.895 0.00 0.00 39.92 2.57
2492 4750 1.992277 AGCCGCCTCAGTTCCTGAT 60.992 57.895 0.00 0.00 39.92 2.90
2493 4751 2.604686 AGCCGCCTCAGTTCCTGA 60.605 61.111 0.00 0.00 38.25 3.86
2494 4752 2.249413 ATCAGCCGCCTCAGTTCCTG 62.249 60.000 0.00 0.00 0.00 3.86
2495 4753 1.965754 GATCAGCCGCCTCAGTTCCT 61.966 60.000 0.00 0.00 0.00 3.36
2496 4754 1.522580 GATCAGCCGCCTCAGTTCC 60.523 63.158 0.00 0.00 0.00 3.62
2497 4755 1.522580 GGATCAGCCGCCTCAGTTC 60.523 63.158 0.00 0.00 0.00 3.01
2498 4756 1.630126 ATGGATCAGCCGCCTCAGTT 61.630 55.000 0.00 0.00 40.66 3.16
2499 4757 2.037620 GATGGATCAGCCGCCTCAGT 62.038 60.000 0.00 0.00 40.66 3.41
2500 4758 1.301558 GATGGATCAGCCGCCTCAG 60.302 63.158 0.00 0.00 40.66 3.35
2501 4759 2.811514 GGATGGATCAGCCGCCTCA 61.812 63.158 0.00 0.00 40.66 3.86
2502 4760 2.031768 GGATGGATCAGCCGCCTC 59.968 66.667 0.00 0.00 40.66 4.70
2503 4761 0.837691 TATGGATGGATCAGCCGCCT 60.838 55.000 0.00 0.00 43.67 5.52
2504 4762 0.674895 GTATGGATGGATCAGCCGCC 60.675 60.000 0.00 0.00 43.67 6.13
2505 4763 0.674895 GGTATGGATGGATCAGCCGC 60.675 60.000 0.00 0.00 43.67 6.53
2506 4764 0.979665 AGGTATGGATGGATCAGCCG 59.020 55.000 0.00 0.00 43.67 5.52
2507 4765 1.280421 GGAGGTATGGATGGATCAGCC 59.720 57.143 0.00 0.00 40.77 4.85
2508 4766 2.235898 GAGGAGGTATGGATGGATCAGC 59.764 54.545 0.00 0.00 0.00 4.26
2509 4767 3.514706 CAGAGGAGGTATGGATGGATCAG 59.485 52.174 0.00 0.00 0.00 2.90
2510 4768 3.116590 ACAGAGGAGGTATGGATGGATCA 60.117 47.826 0.00 0.00 0.00 2.92
2511 4769 3.513515 GACAGAGGAGGTATGGATGGATC 59.486 52.174 0.00 0.00 0.00 3.36
2512 4770 3.515562 GACAGAGGAGGTATGGATGGAT 58.484 50.000 0.00 0.00 0.00 3.41
2513 4771 2.426414 GGACAGAGGAGGTATGGATGGA 60.426 54.545 0.00 0.00 0.00 3.41
2514 4772 1.974236 GGACAGAGGAGGTATGGATGG 59.026 57.143 0.00 0.00 0.00 3.51
2515 4773 2.969628 AGGACAGAGGAGGTATGGATG 58.030 52.381 0.00 0.00 0.00 3.51
2516 4774 3.582164 GAAGGACAGAGGAGGTATGGAT 58.418 50.000 0.00 0.00 0.00 3.41
2517 4775 2.687014 CGAAGGACAGAGGAGGTATGGA 60.687 54.545 0.00 0.00 0.00 3.41
2518 4776 1.683917 CGAAGGACAGAGGAGGTATGG 59.316 57.143 0.00 0.00 0.00 2.74
2519 4777 2.656002 TCGAAGGACAGAGGAGGTATG 58.344 52.381 0.00 0.00 0.00 2.39
2520 4778 3.603965 ATCGAAGGACAGAGGAGGTAT 57.396 47.619 0.00 0.00 0.00 2.73
2521 4779 4.165565 TCTTATCGAAGGACAGAGGAGGTA 59.834 45.833 0.00 0.00 33.09 3.08
2522 4780 3.053544 TCTTATCGAAGGACAGAGGAGGT 60.054 47.826 0.00 0.00 33.09 3.85
2523 4781 3.556999 TCTTATCGAAGGACAGAGGAGG 58.443 50.000 0.00 0.00 33.09 4.30
2524 4782 5.584253 TTTCTTATCGAAGGACAGAGGAG 57.416 43.478 0.00 0.00 33.09 3.69
2525 4783 5.894393 AGATTTCTTATCGAAGGACAGAGGA 59.106 40.000 0.00 0.00 33.09 3.71
2526 4784 5.982516 CAGATTTCTTATCGAAGGACAGAGG 59.017 44.000 0.00 0.00 33.09 3.69
2527 4785 6.800543 TCAGATTTCTTATCGAAGGACAGAG 58.199 40.000 0.00 0.00 33.09 3.35
2528 4786 6.775594 TCAGATTTCTTATCGAAGGACAGA 57.224 37.500 0.00 0.00 33.09 3.41
2529 4787 7.547370 AGTTTCAGATTTCTTATCGAAGGACAG 59.453 37.037 0.00 0.00 33.09 3.51
2530 4788 7.386851 AGTTTCAGATTTCTTATCGAAGGACA 58.613 34.615 0.00 0.00 33.09 4.02
2531 4789 7.835634 AGTTTCAGATTTCTTATCGAAGGAC 57.164 36.000 0.00 0.00 33.09 3.85
2532 4790 8.528643 TGTAGTTTCAGATTTCTTATCGAAGGA 58.471 33.333 0.00 0.00 33.09 3.36
2533 4791 8.703604 TGTAGTTTCAGATTTCTTATCGAAGG 57.296 34.615 0.00 0.00 33.09 3.46
2534 4792 8.324567 GCTGTAGTTTCAGATTTCTTATCGAAG 58.675 37.037 0.00 0.00 37.61 3.79
2535 4793 8.035394 AGCTGTAGTTTCAGATTTCTTATCGAA 58.965 33.333 0.00 0.00 37.61 3.71
2536 4794 7.489435 CAGCTGTAGTTTCAGATTTCTTATCGA 59.511 37.037 5.25 0.00 37.61 3.59
2537 4795 7.489435 TCAGCTGTAGTTTCAGATTTCTTATCG 59.511 37.037 14.67 0.00 37.61 2.92
2538 4796 8.709386 TCAGCTGTAGTTTCAGATTTCTTATC 57.291 34.615 14.67 0.00 37.61 1.75
2539 4797 9.323985 GATCAGCTGTAGTTTCAGATTTCTTAT 57.676 33.333 14.67 0.00 37.61 1.73
2540 4798 8.535335 AGATCAGCTGTAGTTTCAGATTTCTTA 58.465 33.333 14.67 0.00 37.61 2.10
2541 4799 7.393216 AGATCAGCTGTAGTTTCAGATTTCTT 58.607 34.615 14.67 0.00 37.61 2.52
2542 4800 6.945218 AGATCAGCTGTAGTTTCAGATTTCT 58.055 36.000 14.67 0.00 37.61 2.52
2543 4801 7.608308 AAGATCAGCTGTAGTTTCAGATTTC 57.392 36.000 14.67 0.00 37.61 2.17
2544 4802 7.992754 AAAGATCAGCTGTAGTTTCAGATTT 57.007 32.000 14.67 0.00 37.61 2.17
2545 4803 8.317679 ACTAAAGATCAGCTGTAGTTTCAGATT 58.682 33.333 14.67 4.65 43.71 2.40
2546 4804 7.846066 ACTAAAGATCAGCTGTAGTTTCAGAT 58.154 34.615 14.67 0.00 43.71 2.90
2547 4805 7.233389 ACTAAAGATCAGCTGTAGTTTCAGA 57.767 36.000 14.67 0.00 43.71 3.27
2554 4812 8.764524 AAGTAACAACTAAAGATCAGCTGTAG 57.235 34.615 14.67 10.04 39.86 2.74
2555 4813 9.555727 AAAAGTAACAACTAAAGATCAGCTGTA 57.444 29.630 14.67 0.48 0.00 2.74
2556 4814 8.345565 CAAAAGTAACAACTAAAGATCAGCTGT 58.654 33.333 14.67 0.42 0.00 4.40
2557 4815 8.559536 TCAAAAGTAACAACTAAAGATCAGCTG 58.440 33.333 7.63 7.63 0.00 4.24
2558 4816 8.677148 TCAAAAGTAACAACTAAAGATCAGCT 57.323 30.769 0.00 0.00 0.00 4.24
2559 4817 8.774586 TCTCAAAAGTAACAACTAAAGATCAGC 58.225 33.333 0.00 0.00 0.00 4.26
2564 4822 8.836413 CCACATCTCAAAAGTAACAACTAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
2565 4823 8.621286 ACCACATCTCAAAAGTAACAACTAAAG 58.379 33.333 0.00 0.00 0.00 1.85
2566 4824 8.514330 ACCACATCTCAAAAGTAACAACTAAA 57.486 30.769 0.00 0.00 0.00 1.85
2567 4825 8.402472 CAACCACATCTCAAAAGTAACAACTAA 58.598 33.333 0.00 0.00 0.00 2.24
2568 4826 7.771361 TCAACCACATCTCAAAAGTAACAACTA 59.229 33.333 0.00 0.00 0.00 2.24
2569 4827 6.601613 TCAACCACATCTCAAAAGTAACAACT 59.398 34.615 0.00 0.00 0.00 3.16
2570 4828 6.791303 TCAACCACATCTCAAAAGTAACAAC 58.209 36.000 0.00 0.00 0.00 3.32
2571 4829 7.068103 ACATCAACCACATCTCAAAAGTAACAA 59.932 33.333 0.00 0.00 0.00 2.83
2572 4830 6.545666 ACATCAACCACATCTCAAAAGTAACA 59.454 34.615 0.00 0.00 0.00 2.41
2573 4831 6.857964 CACATCAACCACATCTCAAAAGTAAC 59.142 38.462 0.00 0.00 0.00 2.50
2574 4832 6.770303 TCACATCAACCACATCTCAAAAGTAA 59.230 34.615 0.00 0.00 0.00 2.24
2575 4833 6.295249 TCACATCAACCACATCTCAAAAGTA 58.705 36.000 0.00 0.00 0.00 2.24
2576 4834 5.132502 TCACATCAACCACATCTCAAAAGT 58.867 37.500 0.00 0.00 0.00 2.66
2577 4835 5.471116 TCTCACATCAACCACATCTCAAAAG 59.529 40.000 0.00 0.00 0.00 2.27
2578 4836 5.375773 TCTCACATCAACCACATCTCAAAA 58.624 37.500 0.00 0.00 0.00 2.44
2579 4837 4.971939 TCTCACATCAACCACATCTCAAA 58.028 39.130 0.00 0.00 0.00 2.69
2580 4838 4.622260 TCTCACATCAACCACATCTCAA 57.378 40.909 0.00 0.00 0.00 3.02
2581 4839 4.831674 ATCTCACATCAACCACATCTCA 57.168 40.909 0.00 0.00 0.00 3.27
2582 4840 7.335422 ACTTTAATCTCACATCAACCACATCTC 59.665 37.037 0.00 0.00 0.00 2.75
2583 4841 7.170965 ACTTTAATCTCACATCAACCACATCT 58.829 34.615 0.00 0.00 0.00 2.90
2584 4842 7.383102 ACTTTAATCTCACATCAACCACATC 57.617 36.000 0.00 0.00 0.00 3.06
2585 4843 8.862325 TTACTTTAATCTCACATCAACCACAT 57.138 30.769 0.00 0.00 0.00 3.21
2586 4844 8.684386 TTTACTTTAATCTCACATCAACCACA 57.316 30.769 0.00 0.00 0.00 4.17
2587 4845 8.999431 TCTTTACTTTAATCTCACATCAACCAC 58.001 33.333 0.00 0.00 0.00 4.16
2588 4846 9.567776 TTCTTTACTTTAATCTCACATCAACCA 57.432 29.630 0.00 0.00 0.00 3.67
2620 4878 9.730705 TGATAAGCATATATCTAAGCTTTTGCT 57.269 29.630 3.20 5.76 44.22 3.91
2621 4879 9.766277 GTGATAAGCATATATCTAAGCTTTTGC 57.234 33.333 3.20 3.51 44.22 3.68
2626 4884 9.040259 TCTTGGTGATAAGCATATATCTAAGCT 57.960 33.333 5.97 0.00 39.37 3.74
2627 4885 9.658799 TTCTTGGTGATAAGCATATATCTAAGC 57.341 33.333 5.97 0.00 34.14 3.09
2634 4892 8.405531 GCAACTTTTCTTGGTGATAAGCATATA 58.594 33.333 0.00 0.00 37.28 0.86
2635 4893 7.260603 GCAACTTTTCTTGGTGATAAGCATAT 58.739 34.615 0.00 0.00 37.28 1.78
2636 4894 6.620678 GCAACTTTTCTTGGTGATAAGCATA 58.379 36.000 0.00 0.00 37.28 3.14
2637 4895 5.473039 GCAACTTTTCTTGGTGATAAGCAT 58.527 37.500 0.00 0.00 37.28 3.79
2638 4896 4.556501 CGCAACTTTTCTTGGTGATAAGCA 60.557 41.667 0.00 0.00 37.28 3.91
2639 4897 3.914364 CGCAACTTTTCTTGGTGATAAGC 59.086 43.478 0.00 0.00 37.28 3.09
2640 4898 5.108385 ACGCAACTTTTCTTGGTGATAAG 57.892 39.130 0.00 0.00 38.91 1.73
2641 4899 5.508200 AACGCAACTTTTCTTGGTGATAA 57.492 34.783 0.00 0.00 0.00 1.75
2642 4900 5.298276 AGAAACGCAACTTTTCTTGGTGATA 59.702 36.000 0.00 0.00 39.77 2.15
2643 4901 4.097892 AGAAACGCAACTTTTCTTGGTGAT 59.902 37.500 0.00 0.00 39.77 3.06
2644 4902 3.442273 AGAAACGCAACTTTTCTTGGTGA 59.558 39.130 0.00 0.00 39.77 4.02
2645 4903 3.769536 AGAAACGCAACTTTTCTTGGTG 58.230 40.909 0.00 0.00 39.77 4.17
2646 4904 3.181490 GGAGAAACGCAACTTTTCTTGGT 60.181 43.478 1.29 0.00 42.21 3.67
2647 4905 3.066760 AGGAGAAACGCAACTTTTCTTGG 59.933 43.478 1.29 0.00 42.21 3.61
2648 4906 4.292977 AGGAGAAACGCAACTTTTCTTG 57.707 40.909 1.29 0.00 42.21 3.02
2649 4907 4.398044 TCAAGGAGAAACGCAACTTTTCTT 59.602 37.500 1.29 0.00 42.21 2.52
2650 4908 3.945285 TCAAGGAGAAACGCAACTTTTCT 59.055 39.130 0.00 0.00 44.32 2.52
2651 4909 4.287238 TCAAGGAGAAACGCAACTTTTC 57.713 40.909 0.00 0.00 33.81 2.29
2652 4910 4.338118 TGATCAAGGAGAAACGCAACTTTT 59.662 37.500 0.00 0.00 0.00 2.27
2653 4911 3.882888 TGATCAAGGAGAAACGCAACTTT 59.117 39.130 0.00 0.00 0.00 2.66
2654 4912 3.476552 TGATCAAGGAGAAACGCAACTT 58.523 40.909 0.00 0.00 0.00 2.66
2655 4913 3.070018 CTGATCAAGGAGAAACGCAACT 58.930 45.455 0.00 0.00 0.00 3.16
2656 4914 3.067106 TCTGATCAAGGAGAAACGCAAC 58.933 45.455 0.00 0.00 0.00 4.17
2657 4915 3.401033 TCTGATCAAGGAGAAACGCAA 57.599 42.857 0.00 0.00 0.00 4.85
2658 4916 3.401033 TTCTGATCAAGGAGAAACGCA 57.599 42.857 0.00 0.00 0.00 5.24
2659 4917 4.954092 ATTTCTGATCAAGGAGAAACGC 57.046 40.909 9.33 0.00 40.19 4.84
2660 4918 6.036517 CCTGTATTTCTGATCAAGGAGAAACG 59.963 42.308 9.33 0.00 40.19 3.60
2661 4919 7.106239 TCCTGTATTTCTGATCAAGGAGAAAC 58.894 38.462 9.33 1.66 40.19 2.78
2662 4920 7.257790 TCCTGTATTTCTGATCAAGGAGAAA 57.742 36.000 9.50 9.50 41.29 2.52
2663 4921 6.874278 TCCTGTATTTCTGATCAAGGAGAA 57.126 37.500 6.03 0.00 0.00 2.87
2664 4922 6.874278 TTCCTGTATTTCTGATCAAGGAGA 57.126 37.500 9.43 0.00 0.00 3.71
2665 4923 7.334090 TCTTTCCTGTATTTCTGATCAAGGAG 58.666 38.462 9.43 1.64 0.00 3.69
2666 4924 7.257790 TCTTTCCTGTATTTCTGATCAAGGA 57.742 36.000 6.03 6.03 0.00 3.36
2667 4925 8.404000 CAATCTTTCCTGTATTTCTGATCAAGG 58.596 37.037 0.00 0.00 0.00 3.61
2668 4926 7.914346 GCAATCTTTCCTGTATTTCTGATCAAG 59.086 37.037 0.00 0.00 0.00 3.02
2669 4927 7.613022 AGCAATCTTTCCTGTATTTCTGATCAA 59.387 33.333 0.00 0.00 0.00 2.57
2670 4928 7.066645 CAGCAATCTTTCCTGTATTTCTGATCA 59.933 37.037 0.00 0.00 28.99 2.92
2671 4929 7.416022 CAGCAATCTTTCCTGTATTTCTGATC 58.584 38.462 0.00 0.00 28.99 2.92
2672 4930 6.183360 GCAGCAATCTTTCCTGTATTTCTGAT 60.183 38.462 0.00 0.00 28.99 2.90
2673 4931 5.124457 GCAGCAATCTTTCCTGTATTTCTGA 59.876 40.000 0.00 0.00 28.99 3.27
2674 4932 5.125097 AGCAGCAATCTTTCCTGTATTTCTG 59.875 40.000 0.00 0.00 30.26 3.02
2675 4933 5.259632 AGCAGCAATCTTTCCTGTATTTCT 58.740 37.500 0.00 0.00 0.00 2.52
2676 4934 5.573337 AGCAGCAATCTTTCCTGTATTTC 57.427 39.130 0.00 0.00 0.00 2.17
2677 4935 5.591877 CCTAGCAGCAATCTTTCCTGTATTT 59.408 40.000 0.00 0.00 0.00 1.40
2678 4936 5.128919 CCTAGCAGCAATCTTTCCTGTATT 58.871 41.667 0.00 0.00 0.00 1.89
2679 4937 4.164988 ACCTAGCAGCAATCTTTCCTGTAT 59.835 41.667 0.00 0.00 0.00 2.29
2680 4938 3.519510 ACCTAGCAGCAATCTTTCCTGTA 59.480 43.478 0.00 0.00 0.00 2.74
2681 4939 2.307098 ACCTAGCAGCAATCTTTCCTGT 59.693 45.455 0.00 0.00 0.00 4.00
2682 4940 2.681848 CACCTAGCAGCAATCTTTCCTG 59.318 50.000 0.00 0.00 0.00 3.86
2683 4941 2.307098 ACACCTAGCAGCAATCTTTCCT 59.693 45.455 0.00 0.00 0.00 3.36
2684 4942 2.421424 CACACCTAGCAGCAATCTTTCC 59.579 50.000 0.00 0.00 0.00 3.13
2685 4943 3.338249 TCACACCTAGCAGCAATCTTTC 58.662 45.455 0.00 0.00 0.00 2.62
2686 4944 3.244700 ACTCACACCTAGCAGCAATCTTT 60.245 43.478 0.00 0.00 0.00 2.52
2687 4945 2.304180 ACTCACACCTAGCAGCAATCTT 59.696 45.455 0.00 0.00 0.00 2.40
2688 4946 1.905215 ACTCACACCTAGCAGCAATCT 59.095 47.619 0.00 0.00 0.00 2.40
2689 4947 2.393271 ACTCACACCTAGCAGCAATC 57.607 50.000 0.00 0.00 0.00 2.67
2690 4948 2.169352 CCTACTCACACCTAGCAGCAAT 59.831 50.000 0.00 0.00 0.00 3.56
2691 4949 1.550524 CCTACTCACACCTAGCAGCAA 59.449 52.381 0.00 0.00 0.00 3.91
2692 4950 1.186200 CCTACTCACACCTAGCAGCA 58.814 55.000 0.00 0.00 0.00 4.41
2693 4951 1.134965 CACCTACTCACACCTAGCAGC 60.135 57.143 0.00 0.00 0.00 5.25
2694 4952 1.134965 GCACCTACTCACACCTAGCAG 60.135 57.143 0.00 0.00 0.00 4.24
2695 4953 0.895530 GCACCTACTCACACCTAGCA 59.104 55.000 0.00 0.00 0.00 3.49
2696 4954 0.895530 TGCACCTACTCACACCTAGC 59.104 55.000 0.00 0.00 0.00 3.42
2697 4955 1.478510 CCTGCACCTACTCACACCTAG 59.521 57.143 0.00 0.00 0.00 3.02
2698 4956 1.203137 ACCTGCACCTACTCACACCTA 60.203 52.381 0.00 0.00 0.00 3.08
2699 4957 0.471971 ACCTGCACCTACTCACACCT 60.472 55.000 0.00 0.00 0.00 4.00
2700 4958 0.037232 GACCTGCACCTACTCACACC 60.037 60.000 0.00 0.00 0.00 4.16
2701 4959 0.969894 AGACCTGCACCTACTCACAC 59.030 55.000 0.00 0.00 0.00 3.82
2702 4960 0.969149 CAGACCTGCACCTACTCACA 59.031 55.000 0.00 0.00 0.00 3.58
2703 4961 3.822607 CAGACCTGCACCTACTCAC 57.177 57.895 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.