Multiple sequence alignment - TraesCS1A01G359100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G359100 chr1A 100.000 2981 0 0 1 2981 540626491 540629471 0.000000e+00 5505.0
1 TraesCS1A01G359100 chr1A 80.970 1319 140 49 1531 2796 540643318 540644578 0.000000e+00 942.0
2 TraesCS1A01G359100 chr1A 85.443 316 17 9 414 724 540556371 540556662 4.830000e-78 302.0
3 TraesCS1A01G359100 chr1A 95.745 47 2 0 2935 2981 483607214 483607260 3.190000e-10 76.8
4 TraesCS1A01G359100 chr1B 88.202 2475 147 60 323 2710 606493136 606495552 0.000000e+00 2819.0
5 TraesCS1A01G359100 chr1B 82.328 232 24 9 2344 2571 606585631 606585849 5.070000e-43 185.0
6 TraesCS1A01G359100 chr1D 90.137 1967 104 35 361 2287 445226879 445228795 0.000000e+00 2475.0
7 TraesCS1A01G359100 chr1D 78.911 1010 123 48 1847 2796 445234685 445235664 1.180000e-168 603.0
8 TraesCS1A01G359100 chr1D 91.034 435 21 7 2282 2710 445228832 445229254 3.330000e-159 571.0
9 TraesCS1A01G359100 chr5B 75.175 286 54 14 1160 1432 437367800 437367519 5.220000e-23 119.0
10 TraesCS1A01G359100 chr5B 74.368 277 56 12 1157 1421 437807726 437807999 1.460000e-18 104.0
11 TraesCS1A01G359100 chr5B 77.037 135 31 0 1298 1432 437462521 437462387 8.860000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G359100 chr1A 540626491 540629471 2980 False 5505 5505 100.0000 1 2981 1 chr1A.!!$F3 2980
1 TraesCS1A01G359100 chr1A 540643318 540644578 1260 False 942 942 80.9700 1531 2796 1 chr1A.!!$F4 1265
2 TraesCS1A01G359100 chr1B 606493136 606495552 2416 False 2819 2819 88.2020 323 2710 1 chr1B.!!$F1 2387
3 TraesCS1A01G359100 chr1D 445226879 445229254 2375 False 1523 2475 90.5855 361 2710 2 chr1D.!!$F2 2349
4 TraesCS1A01G359100 chr1D 445234685 445235664 979 False 603 603 78.9110 1847 2796 1 chr1D.!!$F1 949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.179056 TTAAGCCATGGCCGTCTAGC 60.179 55.0 33.14 5.59 43.17 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2134 1.00534 CACTCTGCCAAGCGAATCTC 58.995 55.0 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.600065 TCAACTACAACTACTTATGTGAGTCC 58.400 38.462 0.00 0.00 0.00 3.85
26 27 6.527057 ACTACAACTACTTATGTGAGTCCC 57.473 41.667 0.00 0.00 0.00 4.46
27 28 6.254522 ACTACAACTACTTATGTGAGTCCCT 58.745 40.000 0.00 0.00 0.00 4.20
28 29 6.724905 ACTACAACTACTTATGTGAGTCCCTT 59.275 38.462 0.00 0.00 0.00 3.95
29 30 7.892241 ACTACAACTACTTATGTGAGTCCCTTA 59.108 37.037 0.00 0.00 0.00 2.69
30 31 7.171630 ACAACTACTTATGTGAGTCCCTTAG 57.828 40.000 0.00 0.00 0.00 2.18
31 32 6.724905 ACAACTACTTATGTGAGTCCCTTAGT 59.275 38.462 0.00 0.00 0.00 2.24
32 33 7.234988 ACAACTACTTATGTGAGTCCCTTAGTT 59.765 37.037 0.00 0.00 0.00 2.24
33 34 7.793948 ACTACTTATGTGAGTCCCTTAGTTT 57.206 36.000 0.00 0.00 0.00 2.66
34 35 7.838884 ACTACTTATGTGAGTCCCTTAGTTTC 58.161 38.462 0.00 0.00 0.00 2.78
35 36 6.936968 ACTTATGTGAGTCCCTTAGTTTCT 57.063 37.500 0.00 0.00 0.00 2.52
36 37 6.937392 ACTTATGTGAGTCCCTTAGTTTCTC 58.063 40.000 0.00 0.00 0.00 2.87
37 38 6.726764 ACTTATGTGAGTCCCTTAGTTTCTCT 59.273 38.462 0.00 0.00 0.00 3.10
38 39 7.235812 ACTTATGTGAGTCCCTTAGTTTCTCTT 59.764 37.037 0.00 0.00 0.00 2.85
39 40 5.888982 TGTGAGTCCCTTAGTTTCTCTTT 57.111 39.130 0.00 0.00 0.00 2.52
40 41 5.855045 TGTGAGTCCCTTAGTTTCTCTTTC 58.145 41.667 0.00 0.00 0.00 2.62
41 42 5.221661 TGTGAGTCCCTTAGTTTCTCTTTCC 60.222 44.000 0.00 0.00 0.00 3.13
42 43 5.012251 GTGAGTCCCTTAGTTTCTCTTTCCT 59.988 44.000 0.00 0.00 0.00 3.36
43 44 5.246429 TGAGTCCCTTAGTTTCTCTTTCCTC 59.754 44.000 0.00 0.00 0.00 3.71
44 45 5.407936 AGTCCCTTAGTTTCTCTTTCCTCT 58.592 41.667 0.00 0.00 0.00 3.69
45 46 5.847265 AGTCCCTTAGTTTCTCTTTCCTCTT 59.153 40.000 0.00 0.00 0.00 2.85
46 47 7.017531 AGTCCCTTAGTTTCTCTTTCCTCTTA 58.982 38.462 0.00 0.00 0.00 2.10
47 48 7.680739 AGTCCCTTAGTTTCTCTTTCCTCTTAT 59.319 37.037 0.00 0.00 0.00 1.73
48 49 7.766738 GTCCCTTAGTTTCTCTTTCCTCTTATG 59.233 40.741 0.00 0.00 0.00 1.90
49 50 7.458170 TCCCTTAGTTTCTCTTTCCTCTTATGT 59.542 37.037 0.00 0.00 0.00 2.29
50 51 7.766738 CCCTTAGTTTCTCTTTCCTCTTATGTC 59.233 40.741 0.00 0.00 0.00 3.06
51 52 8.536175 CCTTAGTTTCTCTTTCCTCTTATGTCT 58.464 37.037 0.00 0.00 0.00 3.41
52 53 9.936759 CTTAGTTTCTCTTTCCTCTTATGTCTT 57.063 33.333 0.00 0.00 0.00 3.01
53 54 9.930693 TTAGTTTCTCTTTCCTCTTATGTCTTC 57.069 33.333 0.00 0.00 0.00 2.87
54 55 8.201242 AGTTTCTCTTTCCTCTTATGTCTTCT 57.799 34.615 0.00 0.00 0.00 2.85
55 56 8.311109 AGTTTCTCTTTCCTCTTATGTCTTCTC 58.689 37.037 0.00 0.00 0.00 2.87
56 57 6.783708 TCTCTTTCCTCTTATGTCTTCTCC 57.216 41.667 0.00 0.00 0.00 3.71
57 58 6.498538 TCTCTTTCCTCTTATGTCTTCTCCT 58.501 40.000 0.00 0.00 0.00 3.69
58 59 6.379703 TCTCTTTCCTCTTATGTCTTCTCCTG 59.620 42.308 0.00 0.00 0.00 3.86
59 60 5.423610 TCTTTCCTCTTATGTCTTCTCCTGG 59.576 44.000 0.00 0.00 0.00 4.45
60 61 4.609866 TCCTCTTATGTCTTCTCCTGGA 57.390 45.455 0.00 0.00 0.00 3.86
61 62 4.541705 TCCTCTTATGTCTTCTCCTGGAG 58.458 47.826 17.84 17.84 0.00 3.86
62 63 3.069443 CCTCTTATGTCTTCTCCTGGAGC 59.931 52.174 19.08 5.50 0.00 4.70
63 64 3.960102 CTCTTATGTCTTCTCCTGGAGCT 59.040 47.826 19.08 0.00 0.00 4.09
64 65 5.130705 TCTTATGTCTTCTCCTGGAGCTA 57.869 43.478 19.08 8.34 0.00 3.32
65 66 5.136828 TCTTATGTCTTCTCCTGGAGCTAG 58.863 45.833 19.08 16.95 0.00 3.42
66 67 1.479709 TGTCTTCTCCTGGAGCTAGC 58.520 55.000 19.08 6.62 0.00 3.42
67 68 1.006519 TGTCTTCTCCTGGAGCTAGCT 59.993 52.381 19.45 19.45 0.00 3.32
68 69 2.107366 GTCTTCTCCTGGAGCTAGCTT 58.893 52.381 20.42 2.06 0.00 3.74
69 70 2.499693 GTCTTCTCCTGGAGCTAGCTTT 59.500 50.000 20.42 0.00 0.00 3.51
70 71 3.055458 GTCTTCTCCTGGAGCTAGCTTTT 60.055 47.826 20.42 0.00 0.00 2.27
71 72 4.160626 GTCTTCTCCTGGAGCTAGCTTTTA 59.839 45.833 20.42 7.49 0.00 1.52
72 73 4.777896 TCTTCTCCTGGAGCTAGCTTTTAA 59.222 41.667 20.42 4.12 0.00 1.52
73 74 4.744795 TCTCCTGGAGCTAGCTTTTAAG 57.255 45.455 20.42 13.34 0.00 1.85
82 83 4.812814 GCTTTTAAGCCATGGCCG 57.187 55.556 33.14 15.05 46.20 6.13
83 84 1.890174 GCTTTTAAGCCATGGCCGT 59.110 52.632 33.14 23.19 46.20 5.68
84 85 0.179137 GCTTTTAAGCCATGGCCGTC 60.179 55.000 33.14 11.57 46.20 4.79
85 86 1.463674 CTTTTAAGCCATGGCCGTCT 58.536 50.000 33.14 17.30 43.17 4.18
86 87 2.639065 CTTTTAAGCCATGGCCGTCTA 58.361 47.619 33.14 16.25 43.17 2.59
87 88 2.325583 TTTAAGCCATGGCCGTCTAG 57.674 50.000 33.14 0.00 43.17 2.43
88 89 0.179056 TTAAGCCATGGCCGTCTAGC 60.179 55.000 33.14 5.59 43.17 3.42
97 98 3.202923 GCCGTCTAGCCATAAGAGC 57.797 57.895 0.00 0.00 0.00 4.09
98 99 0.676736 GCCGTCTAGCCATAAGAGCT 59.323 55.000 0.00 0.00 44.49 4.09
99 100 1.887198 GCCGTCTAGCCATAAGAGCTA 59.113 52.381 0.00 0.00 41.83 3.32
100 101 2.296471 GCCGTCTAGCCATAAGAGCTAA 59.704 50.000 0.00 0.00 42.07 3.09
101 102 3.243771 GCCGTCTAGCCATAAGAGCTAAA 60.244 47.826 0.00 0.00 42.07 1.85
102 103 4.739735 GCCGTCTAGCCATAAGAGCTAAAA 60.740 45.833 0.00 0.00 42.07 1.52
103 104 5.357257 CCGTCTAGCCATAAGAGCTAAAAA 58.643 41.667 0.00 0.00 42.07 1.94
120 121 2.969821 AAAACCTAGGCATGTGGTGA 57.030 45.000 9.30 0.00 33.89 4.02
121 122 2.496899 AAACCTAGGCATGTGGTGAG 57.503 50.000 9.30 0.00 33.89 3.51
122 123 1.656587 AACCTAGGCATGTGGTGAGA 58.343 50.000 9.30 0.00 33.89 3.27
123 124 1.885049 ACCTAGGCATGTGGTGAGAT 58.115 50.000 9.30 0.00 32.16 2.75
124 125 3.046283 ACCTAGGCATGTGGTGAGATA 57.954 47.619 9.30 0.00 32.16 1.98
125 126 2.700897 ACCTAGGCATGTGGTGAGATAC 59.299 50.000 9.30 0.00 32.16 2.24
126 127 2.700371 CCTAGGCATGTGGTGAGATACA 59.300 50.000 0.00 0.00 0.00 2.29
127 128 3.326006 CCTAGGCATGTGGTGAGATACAT 59.674 47.826 0.00 0.00 37.99 2.29
128 129 4.528206 CCTAGGCATGTGGTGAGATACATA 59.472 45.833 0.00 0.00 35.86 2.29
129 130 4.613925 AGGCATGTGGTGAGATACATAG 57.386 45.455 0.00 0.00 35.86 2.23
130 131 3.326006 AGGCATGTGGTGAGATACATAGG 59.674 47.826 0.00 0.00 35.86 2.57
131 132 3.071602 GGCATGTGGTGAGATACATAGGT 59.928 47.826 0.00 0.00 35.86 3.08
132 133 4.283467 GGCATGTGGTGAGATACATAGGTA 59.717 45.833 0.00 0.00 35.86 3.08
133 134 5.230942 GCATGTGGTGAGATACATAGGTAC 58.769 45.833 0.00 0.00 35.86 3.34
134 135 5.221441 GCATGTGGTGAGATACATAGGTACA 60.221 44.000 0.00 0.00 35.86 2.90
135 136 6.519043 GCATGTGGTGAGATACATAGGTACAT 60.519 42.308 0.00 0.00 35.86 2.29
136 137 7.445121 CATGTGGTGAGATACATAGGTACATT 58.555 38.462 0.00 0.00 35.86 2.71
137 138 7.050970 TGTGGTGAGATACATAGGTACATTC 57.949 40.000 0.00 0.00 30.94 2.67
138 139 6.839134 TGTGGTGAGATACATAGGTACATTCT 59.161 38.462 0.00 0.00 30.94 2.40
139 140 7.344612 TGTGGTGAGATACATAGGTACATTCTT 59.655 37.037 0.00 0.00 30.94 2.52
140 141 7.653713 GTGGTGAGATACATAGGTACATTCTTG 59.346 40.741 0.00 0.00 30.94 3.02
141 142 7.344612 TGGTGAGATACATAGGTACATTCTTGT 59.655 37.037 0.00 0.00 39.98 3.16
142 143 7.868415 GGTGAGATACATAGGTACATTCTTGTC 59.132 40.741 0.00 0.00 37.28 3.18
143 144 7.591795 GTGAGATACATAGGTACATTCTTGTCG 59.408 40.741 0.00 0.00 37.28 4.35
144 145 7.501225 TGAGATACATAGGTACATTCTTGTCGA 59.499 37.037 0.00 0.00 37.28 4.20
145 146 7.877003 AGATACATAGGTACATTCTTGTCGAG 58.123 38.462 0.00 0.00 37.28 4.04
146 147 7.720074 AGATACATAGGTACATTCTTGTCGAGA 59.280 37.037 0.00 0.00 37.28 4.04
147 148 8.234136 ATACATAGGTACATTCTTGTCGAGAA 57.766 34.615 4.95 4.95 39.37 2.87
148 149 6.331061 ACATAGGTACATTCTTGTCGAGAAC 58.669 40.000 4.56 0.00 46.66 3.01
149 150 3.834610 AGGTACATTCTTGTCGAGAACG 58.165 45.455 4.56 0.00 46.66 3.95
150 151 3.504906 AGGTACATTCTTGTCGAGAACGA 59.495 43.478 4.56 0.00 46.66 3.85
162 163 3.990092 TCGAGAACGATGGGATAATTGG 58.010 45.455 0.00 0.00 43.81 3.16
163 164 3.067106 CGAGAACGATGGGATAATTGGG 58.933 50.000 0.00 0.00 42.66 4.12
164 165 3.494398 CGAGAACGATGGGATAATTGGGT 60.494 47.826 0.00 0.00 42.66 4.51
165 166 3.815401 GAGAACGATGGGATAATTGGGTG 59.185 47.826 0.00 0.00 0.00 4.61
166 167 3.202151 AGAACGATGGGATAATTGGGTGT 59.798 43.478 0.00 0.00 0.00 4.16
167 168 3.208747 ACGATGGGATAATTGGGTGTC 57.791 47.619 0.00 0.00 0.00 3.67
168 169 2.507886 ACGATGGGATAATTGGGTGTCA 59.492 45.455 0.00 0.00 0.00 3.58
169 170 3.138283 ACGATGGGATAATTGGGTGTCAT 59.862 43.478 0.00 0.00 0.00 3.06
170 171 3.503363 CGATGGGATAATTGGGTGTCATG 59.497 47.826 0.00 0.00 0.00 3.07
171 172 2.665165 TGGGATAATTGGGTGTCATGC 58.335 47.619 0.00 0.00 0.00 4.06
172 173 2.024560 TGGGATAATTGGGTGTCATGCA 60.025 45.455 0.00 0.00 0.00 3.96
173 174 2.624838 GGGATAATTGGGTGTCATGCAG 59.375 50.000 0.00 0.00 0.00 4.41
174 175 2.624838 GGATAATTGGGTGTCATGCAGG 59.375 50.000 0.00 0.00 0.00 4.85
175 176 3.554934 GATAATTGGGTGTCATGCAGGA 58.445 45.455 0.00 0.00 0.00 3.86
176 177 1.843368 AATTGGGTGTCATGCAGGAG 58.157 50.000 0.00 0.00 0.00 3.69
177 178 0.994247 ATTGGGTGTCATGCAGGAGA 59.006 50.000 0.00 0.00 0.00 3.71
178 179 0.994247 TTGGGTGTCATGCAGGAGAT 59.006 50.000 0.00 0.00 0.00 2.75
179 180 0.253894 TGGGTGTCATGCAGGAGATG 59.746 55.000 0.00 0.00 0.00 2.90
180 181 0.254178 GGGTGTCATGCAGGAGATGT 59.746 55.000 0.00 0.00 0.00 3.06
181 182 1.376543 GGTGTCATGCAGGAGATGTG 58.623 55.000 0.00 0.00 0.00 3.21
182 183 1.339438 GGTGTCATGCAGGAGATGTGT 60.339 52.381 0.00 0.00 0.00 3.72
183 184 2.430465 GTGTCATGCAGGAGATGTGTT 58.570 47.619 0.00 0.00 0.00 3.32
184 185 2.816087 GTGTCATGCAGGAGATGTGTTT 59.184 45.455 0.00 0.00 0.00 2.83
185 186 2.815503 TGTCATGCAGGAGATGTGTTTG 59.184 45.455 0.00 0.00 0.00 2.93
186 187 3.076621 GTCATGCAGGAGATGTGTTTGA 58.923 45.455 0.00 0.00 0.00 2.69
187 188 3.693085 GTCATGCAGGAGATGTGTTTGAT 59.307 43.478 0.00 0.00 0.00 2.57
188 189 3.692593 TCATGCAGGAGATGTGTTTGATG 59.307 43.478 0.00 0.00 0.00 3.07
189 190 1.814394 TGCAGGAGATGTGTTTGATGC 59.186 47.619 0.00 0.00 0.00 3.91
190 191 1.814394 GCAGGAGATGTGTTTGATGCA 59.186 47.619 0.00 0.00 32.79 3.96
191 192 2.159421 GCAGGAGATGTGTTTGATGCAG 60.159 50.000 0.00 0.00 32.79 4.41
192 193 2.422479 CAGGAGATGTGTTTGATGCAGG 59.578 50.000 0.00 0.00 0.00 4.85
193 194 2.040813 AGGAGATGTGTTTGATGCAGGT 59.959 45.455 0.00 0.00 0.00 4.00
194 195 3.264193 AGGAGATGTGTTTGATGCAGGTA 59.736 43.478 0.00 0.00 0.00 3.08
195 196 4.080129 AGGAGATGTGTTTGATGCAGGTAT 60.080 41.667 0.00 0.00 0.00 2.73
196 197 4.036027 GGAGATGTGTTTGATGCAGGTATG 59.964 45.833 0.00 0.00 0.00 2.39
197 198 4.847198 AGATGTGTTTGATGCAGGTATGA 58.153 39.130 0.00 0.00 0.00 2.15
198 199 4.880120 AGATGTGTTTGATGCAGGTATGAG 59.120 41.667 0.00 0.00 0.00 2.90
199 200 4.019792 TGTGTTTGATGCAGGTATGAGT 57.980 40.909 0.00 0.00 0.00 3.41
200 201 4.002982 TGTGTTTGATGCAGGTATGAGTC 58.997 43.478 0.00 0.00 0.00 3.36
201 202 4.002982 GTGTTTGATGCAGGTATGAGTCA 58.997 43.478 0.00 0.00 0.00 3.41
202 203 4.455533 GTGTTTGATGCAGGTATGAGTCAA 59.544 41.667 0.00 0.00 32.74 3.18
203 204 5.124457 GTGTTTGATGCAGGTATGAGTCAAT 59.876 40.000 0.00 0.00 33.87 2.57
204 205 5.711506 TGTTTGATGCAGGTATGAGTCAATT 59.288 36.000 0.00 0.00 33.87 2.32
205 206 6.127925 TGTTTGATGCAGGTATGAGTCAATTC 60.128 38.462 0.00 0.00 33.87 2.17
206 207 5.101648 TGATGCAGGTATGAGTCAATTCA 57.898 39.130 0.00 0.00 0.00 2.57
207 208 5.499313 TGATGCAGGTATGAGTCAATTCAA 58.501 37.500 0.00 0.00 0.00 2.69
208 209 5.587443 TGATGCAGGTATGAGTCAATTCAAG 59.413 40.000 0.00 0.00 0.00 3.02
209 210 4.910195 TGCAGGTATGAGTCAATTCAAGT 58.090 39.130 0.00 0.00 0.00 3.16
210 211 6.048732 TGCAGGTATGAGTCAATTCAAGTA 57.951 37.500 0.00 0.00 0.00 2.24
211 212 6.472016 TGCAGGTATGAGTCAATTCAAGTAA 58.528 36.000 0.00 0.00 0.00 2.24
212 213 6.939730 TGCAGGTATGAGTCAATTCAAGTAAA 59.060 34.615 0.00 0.00 0.00 2.01
213 214 7.119699 TGCAGGTATGAGTCAATTCAAGTAAAG 59.880 37.037 0.00 0.00 0.00 1.85
214 215 7.414540 GCAGGTATGAGTCAATTCAAGTAAAGG 60.415 40.741 0.00 0.00 0.00 3.11
215 216 7.607991 CAGGTATGAGTCAATTCAAGTAAAGGT 59.392 37.037 0.00 0.00 0.00 3.50
216 217 8.164070 AGGTATGAGTCAATTCAAGTAAAGGTT 58.836 33.333 0.00 0.00 0.00 3.50
217 218 9.444600 GGTATGAGTCAATTCAAGTAAAGGTTA 57.555 33.333 0.00 0.00 0.00 2.85
219 220 7.979444 TGAGTCAATTCAAGTAAAGGTTAGG 57.021 36.000 0.00 0.00 0.00 2.69
220 221 6.430000 TGAGTCAATTCAAGTAAAGGTTAGGC 59.570 38.462 0.00 0.00 0.00 3.93
221 222 5.710567 AGTCAATTCAAGTAAAGGTTAGGCC 59.289 40.000 0.00 0.00 37.58 5.19
222 223 5.014202 TCAATTCAAGTAAAGGTTAGGCCC 58.986 41.667 0.00 0.00 38.26 5.80
223 224 2.773993 TCAAGTAAAGGTTAGGCCCG 57.226 50.000 0.00 0.00 38.26 6.13
224 225 1.980036 TCAAGTAAAGGTTAGGCCCGT 59.020 47.619 0.00 0.00 38.26 5.28
225 226 2.081462 CAAGTAAAGGTTAGGCCCGTG 58.919 52.381 0.00 0.00 38.26 4.94
226 227 1.648116 AGTAAAGGTTAGGCCCGTGA 58.352 50.000 0.00 0.00 38.26 4.35
227 228 1.553704 AGTAAAGGTTAGGCCCGTGAG 59.446 52.381 0.00 0.00 38.26 3.51
228 229 0.251073 TAAAGGTTAGGCCCGTGAGC 59.749 55.000 0.00 0.00 38.26 4.26
229 230 2.798148 AAAGGTTAGGCCCGTGAGCG 62.798 60.000 0.00 0.00 38.26 5.03
231 232 4.452733 GTTAGGCCCGTGAGCGCT 62.453 66.667 11.27 11.27 36.67 5.92
232 233 4.143333 TTAGGCCCGTGAGCGCTC 62.143 66.667 30.42 30.42 36.67 5.03
253 254 3.372123 GAGCTAGAGATCGGCCCC 58.628 66.667 0.00 0.00 0.00 5.80
254 255 1.228737 GAGCTAGAGATCGGCCCCT 60.229 63.158 0.00 0.00 0.00 4.79
255 256 0.830023 GAGCTAGAGATCGGCCCCTT 60.830 60.000 0.00 0.00 0.00 3.95
256 257 0.399233 AGCTAGAGATCGGCCCCTTT 60.399 55.000 0.00 0.00 0.00 3.11
257 258 0.470341 GCTAGAGATCGGCCCCTTTT 59.530 55.000 0.00 0.00 0.00 2.27
258 259 1.134068 GCTAGAGATCGGCCCCTTTTT 60.134 52.381 0.00 0.00 0.00 1.94
495 544 1.593793 CGCAATCGATCATGTGCACTG 60.594 52.381 19.41 13.55 36.80 3.66
506 555 5.833406 TCATGTGCACTGAAAAGAAAAGA 57.167 34.783 19.41 0.00 0.00 2.52
507 556 6.206395 TCATGTGCACTGAAAAGAAAAGAA 57.794 33.333 19.41 0.00 0.00 2.52
508 557 6.629128 TCATGTGCACTGAAAAGAAAAGAAA 58.371 32.000 19.41 0.00 0.00 2.52
509 558 7.095910 TCATGTGCACTGAAAAGAAAAGAAAA 58.904 30.769 19.41 0.00 0.00 2.29
510 559 6.949578 TGTGCACTGAAAAGAAAAGAAAAG 57.050 33.333 19.41 0.00 0.00 2.27
511 560 6.454795 TGTGCACTGAAAAGAAAAGAAAAGT 58.545 32.000 19.41 0.00 0.00 2.66
512 561 6.928492 TGTGCACTGAAAAGAAAAGAAAAGTT 59.072 30.769 19.41 0.00 0.00 2.66
513 562 8.085296 TGTGCACTGAAAAGAAAAGAAAAGTTA 58.915 29.630 19.41 0.00 0.00 2.24
514 563 8.373256 GTGCACTGAAAAGAAAAGAAAAGTTAC 58.627 33.333 10.32 0.00 0.00 2.50
515 564 7.544217 TGCACTGAAAAGAAAAGAAAAGTTACC 59.456 33.333 0.00 0.00 0.00 2.85
516 565 7.759886 GCACTGAAAAGAAAAGAAAAGTTACCT 59.240 33.333 0.00 0.00 0.00 3.08
517 566 9.290483 CACTGAAAAGAAAAGAAAAGTTACCTC 57.710 33.333 0.00 0.00 0.00 3.85
518 567 9.020731 ACTGAAAAGAAAAGAAAAGTTACCTCA 57.979 29.630 0.00 0.00 0.00 3.86
519 568 9.855021 CTGAAAAGAAAAGAAAAGTTACCTCAA 57.145 29.630 0.00 0.00 0.00 3.02
628 681 1.565305 CGTCGTCGGCTACTACTACT 58.435 55.000 0.00 0.00 0.00 2.57
629 682 2.732366 CGTCGTCGGCTACTACTACTA 58.268 52.381 0.00 0.00 0.00 1.82
678 741 1.301716 TCCACGTCTTCCTTGCTGC 60.302 57.895 0.00 0.00 0.00 5.25
700 763 3.723348 GTGGTTCGCCTCGCAACC 61.723 66.667 9.59 9.59 38.87 3.77
717 780 0.243095 ACCACTCCGAAGACGCTAAC 59.757 55.000 0.00 0.00 38.29 2.34
826 903 1.961277 AACGCGCTTACTGCTGCTT 60.961 52.632 5.73 0.00 40.11 3.91
827 904 0.669318 AACGCGCTTACTGCTGCTTA 60.669 50.000 5.73 0.00 40.11 3.09
849 935 2.369257 CTGACAGCGTGGACCTGTGT 62.369 60.000 0.00 0.00 43.17 3.72
850 936 1.956170 GACAGCGTGGACCTGTGTG 60.956 63.158 0.00 0.00 43.17 3.82
851 937 3.349006 CAGCGTGGACCTGTGTGC 61.349 66.667 0.00 0.00 0.00 4.57
852 938 3.550431 AGCGTGGACCTGTGTGCT 61.550 61.111 0.00 0.00 33.32 4.40
853 939 3.044305 GCGTGGACCTGTGTGCTC 61.044 66.667 0.00 0.00 33.32 4.26
854 940 2.734723 CGTGGACCTGTGTGCTCG 60.735 66.667 0.00 0.00 41.92 5.03
855 941 2.357517 GTGGACCTGTGTGCTCGG 60.358 66.667 0.00 0.00 33.32 4.63
856 942 4.314440 TGGACCTGTGTGCTCGGC 62.314 66.667 0.00 0.00 33.32 5.54
896 982 2.126424 GACTCGTCGTCCAGCCAC 60.126 66.667 0.00 0.00 36.62 5.01
907 998 1.562475 GTCCAGCCACCCCTTATAACA 59.438 52.381 0.00 0.00 0.00 2.41
943 1034 4.929146 AATTTTCAGCCACCTACCTACT 57.071 40.909 0.00 0.00 0.00 2.57
1020 1117 1.315981 TGGAGCACTACGAGAGGCTG 61.316 60.000 0.00 0.00 33.39 4.85
1069 1166 2.992689 TCTACAAGGCGCGGGACA 60.993 61.111 8.52 0.00 0.00 4.02
1272 1369 3.148031 GATGGAGTACGTCGGGCCC 62.148 68.421 13.57 13.57 0.00 5.80
1857 1960 4.135153 CCGGACAGGAGGCTCACG 62.135 72.222 17.69 8.86 45.00 4.35
1929 2032 2.435059 GACCAGCCTCTCAACGCC 60.435 66.667 0.00 0.00 0.00 5.68
1988 2097 2.673368 CCATCGTTGTGTAGAAAGCTCC 59.327 50.000 0.00 0.00 0.00 4.70
2025 2134 5.309323 TCAACATTCTTTTAATCGGCTGG 57.691 39.130 0.00 0.00 0.00 4.85
2068 2191 3.453070 TTTTGGTGGCGGCTTTGGC 62.453 57.895 11.43 0.00 37.82 4.52
2169 2292 2.683933 TTCCTCGAGGGTCCTGCC 60.684 66.667 30.80 0.00 36.25 4.85
2218 2345 6.214191 TCTTGTTTATGTTGTCCTTGCAAA 57.786 33.333 0.00 0.00 0.00 3.68
2260 2392 8.165239 TCTTGTGATACTGTAAACAAAGCAAT 57.835 30.769 15.77 0.00 32.50 3.56
2261 2393 9.278978 TCTTGTGATACTGTAAACAAAGCAATA 57.721 29.630 15.77 3.16 32.50 1.90
2262 2394 9.329913 CTTGTGATACTGTAAACAAAGCAATAC 57.670 33.333 15.77 0.00 32.50 1.89
2271 2403 9.988350 CTGTAAACAAAGCAATACTACAATAGG 57.012 33.333 0.00 0.00 0.00 2.57
2282 2414 2.846827 ACTACAATAGGGGCAAAGCTCT 59.153 45.455 0.00 0.00 0.00 4.09
2292 2466 0.445436 GCAAAGCTCTCATGTCCGTG 59.555 55.000 0.00 0.00 0.00 4.94
2332 2522 4.853743 GCTTCAAATCTGTCCGAATTTCAC 59.146 41.667 0.00 0.00 0.00 3.18
2336 2526 4.425577 AATCTGTCCGAATTTCACAAGC 57.574 40.909 0.00 0.00 0.00 4.01
2337 2527 3.126001 TCTGTCCGAATTTCACAAGCT 57.874 42.857 0.00 0.00 0.00 3.74
2338 2528 2.807967 TCTGTCCGAATTTCACAAGCTG 59.192 45.455 0.00 0.00 0.00 4.24
2339 2529 1.266718 TGTCCGAATTTCACAAGCTGC 59.733 47.619 0.00 0.00 0.00 5.25
2381 2575 0.036952 CACACCCAGACTGGTAGCTG 60.037 60.000 20.24 11.46 36.67 4.24
2382 2576 1.078848 CACCCAGACTGGTAGCTGC 60.079 63.158 20.24 0.00 36.67 5.25
2743 2971 1.526917 GGTCCCCAAGATCGCATGG 60.527 63.158 7.92 7.92 36.42 3.66
2748 2976 1.097547 CCCAAGATCGCATGGTGACC 61.098 60.000 12.37 0.00 34.79 4.02
2750 2978 1.153369 AAGATCGCATGGTGACCCG 60.153 57.895 0.00 0.00 0.00 5.28
2751 2979 2.588877 GATCGCATGGTGACCCGG 60.589 66.667 0.00 0.00 0.00 5.73
2789 3017 1.273606 CTCTCCACTCCACGTGATGTT 59.726 52.381 19.30 0.00 46.81 2.71
2796 3024 1.169661 TCCACGTGATGTTGTTGCCC 61.170 55.000 19.30 0.00 0.00 5.36
2797 3025 1.285641 CACGTGATGTTGTTGCCCC 59.714 57.895 10.90 0.00 0.00 5.80
2798 3026 2.258013 ACGTGATGTTGTTGCCCCG 61.258 57.895 0.00 0.00 0.00 5.73
2799 3027 2.961768 GTGATGTTGTTGCCCCGG 59.038 61.111 0.00 0.00 0.00 5.73
2800 3028 2.282816 TGATGTTGTTGCCCCGGG 60.283 61.111 15.80 15.80 0.00 5.73
2822 3050 0.857935 GCTCACTGCATATCTCACGC 59.142 55.000 0.00 0.00 42.31 5.34
2823 3051 1.537776 GCTCACTGCATATCTCACGCT 60.538 52.381 0.00 0.00 42.31 5.07
2824 3052 2.392821 CTCACTGCATATCTCACGCTC 58.607 52.381 0.00 0.00 0.00 5.03
2825 3053 1.750778 TCACTGCATATCTCACGCTCA 59.249 47.619 0.00 0.00 0.00 4.26
2826 3054 2.125685 CACTGCATATCTCACGCTCAG 58.874 52.381 0.00 0.00 0.00 3.35
2827 3055 1.753649 ACTGCATATCTCACGCTCAGT 59.246 47.619 0.00 0.00 0.00 3.41
2828 3056 2.952310 ACTGCATATCTCACGCTCAGTA 59.048 45.455 0.00 0.00 32.29 2.74
2829 3057 3.243234 ACTGCATATCTCACGCTCAGTAC 60.243 47.826 0.00 0.00 32.29 2.73
2830 3058 2.687935 TGCATATCTCACGCTCAGTACA 59.312 45.455 0.00 0.00 0.00 2.90
2831 3059 3.130340 TGCATATCTCACGCTCAGTACAA 59.870 43.478 0.00 0.00 0.00 2.41
2832 3060 3.487574 GCATATCTCACGCTCAGTACAAC 59.512 47.826 0.00 0.00 0.00 3.32
2833 3061 2.264109 ATCTCACGCTCAGTACAACG 57.736 50.000 0.00 0.00 0.00 4.10
2834 3062 1.232119 TCTCACGCTCAGTACAACGA 58.768 50.000 0.00 0.00 0.00 3.85
2835 3063 1.605232 TCTCACGCTCAGTACAACGAA 59.395 47.619 0.00 0.00 0.00 3.85
2836 3064 1.714460 CTCACGCTCAGTACAACGAAC 59.286 52.381 0.00 0.00 0.00 3.95
2837 3065 0.429736 CACGCTCAGTACAACGAACG 59.570 55.000 0.00 0.00 0.00 3.95
2838 3066 0.662374 ACGCTCAGTACAACGAACGG 60.662 55.000 0.00 0.00 0.00 4.44
2839 3067 0.386352 CGCTCAGTACAACGAACGGA 60.386 55.000 0.00 0.00 0.00 4.69
2840 3068 1.337821 GCTCAGTACAACGAACGGAG 58.662 55.000 0.00 0.00 40.69 4.63
2841 3069 1.337821 CTCAGTACAACGAACGGAGC 58.662 55.000 0.00 0.00 33.50 4.70
2842 3070 0.038892 TCAGTACAACGAACGGAGCC 60.039 55.000 0.00 0.00 0.00 4.70
2843 3071 1.080974 AGTACAACGAACGGAGCCG 60.081 57.895 7.48 7.48 46.03 5.52
2844 3072 2.431260 TACAACGAACGGAGCCGC 60.431 61.111 9.14 0.00 44.19 6.53
2845 3073 3.210223 TACAACGAACGGAGCCGCA 62.210 57.895 9.14 0.00 44.19 5.69
2846 3074 4.072088 CAACGAACGGAGCCGCAC 62.072 66.667 9.14 2.49 44.19 5.34
2847 3075 4.595538 AACGAACGGAGCCGCACA 62.596 61.111 9.14 0.00 44.19 4.57
2850 3078 3.712881 GAACGGAGCCGCACACAC 61.713 66.667 9.14 0.00 44.19 3.82
2860 3088 2.904866 GCACACACGGCTTCCCAA 60.905 61.111 0.00 0.00 0.00 4.12
2861 3089 2.908073 GCACACACGGCTTCCCAAG 61.908 63.158 0.00 0.00 0.00 3.61
2884 3112 4.459331 CGCCGCCGTGGTTCAATG 62.459 66.667 0.00 0.00 41.21 2.82
2885 3113 4.114997 GCCGCCGTGGTTCAATGG 62.115 66.667 0.00 0.00 41.21 3.16
2886 3114 2.671619 CCGCCGTGGTTCAATGGT 60.672 61.111 0.00 0.00 0.00 3.55
2887 3115 2.560861 CGCCGTGGTTCAATGGTG 59.439 61.111 0.00 0.00 0.00 4.17
2888 3116 1.963855 CGCCGTGGTTCAATGGTGA 60.964 57.895 0.00 0.00 33.86 4.02
2889 3117 1.511318 CGCCGTGGTTCAATGGTGAA 61.511 55.000 0.00 0.00 41.57 3.18
2897 3125 1.890876 TTCAATGGTGAACCTGGACG 58.109 50.000 0.00 0.00 38.88 4.79
2898 3126 1.052617 TCAATGGTGAACCTGGACGA 58.947 50.000 0.00 0.00 36.82 4.20
2899 3127 1.001974 TCAATGGTGAACCTGGACGAG 59.998 52.381 0.00 0.00 36.82 4.18
2901 3129 0.544357 ATGGTGAACCTGGACGAGGA 60.544 55.000 10.93 0.00 46.33 3.71
2902 3130 1.185618 TGGTGAACCTGGACGAGGAG 61.186 60.000 10.93 0.00 46.33 3.69
2903 3131 1.079750 GTGAACCTGGACGAGGAGC 60.080 63.158 10.93 2.26 46.33 4.70
2904 3132 2.182030 GAACCTGGACGAGGAGCG 59.818 66.667 10.93 0.00 46.33 5.03
2921 3149 2.704725 GCGTTTGGCTCTTTTGATCA 57.295 45.000 0.00 0.00 39.11 2.92
2922 3150 2.589014 GCGTTTGGCTCTTTTGATCAG 58.411 47.619 0.00 0.00 39.11 2.90
2923 3151 2.669391 GCGTTTGGCTCTTTTGATCAGG 60.669 50.000 0.00 0.00 39.11 3.86
2924 3152 2.095059 CGTTTGGCTCTTTTGATCAGGG 60.095 50.000 0.00 0.00 0.00 4.45
2925 3153 3.157087 GTTTGGCTCTTTTGATCAGGGA 58.843 45.455 0.00 0.00 0.00 4.20
2926 3154 3.744940 TTGGCTCTTTTGATCAGGGAT 57.255 42.857 0.00 0.00 0.00 3.85
2927 3155 3.287867 TGGCTCTTTTGATCAGGGATC 57.712 47.619 0.00 0.00 39.31 3.36
2928 3156 2.577563 TGGCTCTTTTGATCAGGGATCA 59.422 45.455 4.86 4.86 45.78 2.92
2929 3157 3.203710 TGGCTCTTTTGATCAGGGATCAT 59.796 43.478 9.51 0.00 46.52 2.45
2930 3158 4.413189 TGGCTCTTTTGATCAGGGATCATA 59.587 41.667 9.51 2.91 46.52 2.15
2931 3159 4.759183 GGCTCTTTTGATCAGGGATCATAC 59.241 45.833 9.51 0.00 46.52 2.39
2932 3160 5.371526 GCTCTTTTGATCAGGGATCATACA 58.628 41.667 9.51 0.00 46.52 2.29
2933 3161 5.824624 GCTCTTTTGATCAGGGATCATACAA 59.175 40.000 9.51 0.00 46.52 2.41
2934 3162 6.319658 GCTCTTTTGATCAGGGATCATACAAA 59.680 38.462 9.51 6.96 46.52 2.83
2935 3163 7.630242 TCTTTTGATCAGGGATCATACAAAC 57.370 36.000 9.51 0.00 46.52 2.93
2936 3164 7.405292 TCTTTTGATCAGGGATCATACAAACT 58.595 34.615 9.51 0.00 46.52 2.66
2937 3165 8.548025 TCTTTTGATCAGGGATCATACAAACTA 58.452 33.333 9.51 0.00 46.52 2.24
2938 3166 8.737168 TTTTGATCAGGGATCATACAAACTAG 57.263 34.615 9.51 0.00 46.52 2.57
2939 3167 7.675161 TTGATCAGGGATCATACAAACTAGA 57.325 36.000 9.51 0.00 46.52 2.43
2940 3168 7.675161 TGATCAGGGATCATACAAACTAGAA 57.325 36.000 4.86 0.00 43.11 2.10
2941 3169 7.730084 TGATCAGGGATCATACAAACTAGAAG 58.270 38.462 4.86 0.00 43.11 2.85
2942 3170 6.485830 TCAGGGATCATACAAACTAGAAGG 57.514 41.667 0.00 0.00 0.00 3.46
2943 3171 6.202331 TCAGGGATCATACAAACTAGAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
2944 3172 6.672218 TCAGGGATCATACAAACTAGAAGGAA 59.328 38.462 0.00 0.00 0.00 3.36
2945 3173 7.182026 TCAGGGATCATACAAACTAGAAGGAAA 59.818 37.037 0.00 0.00 0.00 3.13
2946 3174 7.829211 CAGGGATCATACAAACTAGAAGGAAAA 59.171 37.037 0.00 0.00 0.00 2.29
2947 3175 8.049721 AGGGATCATACAAACTAGAAGGAAAAG 58.950 37.037 0.00 0.00 0.00 2.27
2948 3176 8.047310 GGGATCATACAAACTAGAAGGAAAAGA 58.953 37.037 0.00 0.00 0.00 2.52
2949 3177 8.884726 GGATCATACAAACTAGAAGGAAAAGAC 58.115 37.037 0.00 0.00 0.00 3.01
2950 3178 9.436957 GATCATACAAACTAGAAGGAAAAGACA 57.563 33.333 0.00 0.00 0.00 3.41
2951 3179 8.833231 TCATACAAACTAGAAGGAAAAGACAG 57.167 34.615 0.00 0.00 0.00 3.51
2952 3180 7.387948 TCATACAAACTAGAAGGAAAAGACAGC 59.612 37.037 0.00 0.00 0.00 4.40
2953 3181 4.511826 ACAAACTAGAAGGAAAAGACAGCG 59.488 41.667 0.00 0.00 0.00 5.18
2954 3182 2.689646 ACTAGAAGGAAAAGACAGCGC 58.310 47.619 0.00 0.00 0.00 5.92
2955 3183 1.656095 CTAGAAGGAAAAGACAGCGCG 59.344 52.381 0.00 0.00 0.00 6.86
2956 3184 0.249911 AGAAGGAAAAGACAGCGCGT 60.250 50.000 8.43 2.53 0.00 6.01
2957 3185 0.586802 GAAGGAAAAGACAGCGCGTT 59.413 50.000 8.43 0.00 0.00 4.84
2958 3186 0.307760 AAGGAAAAGACAGCGCGTTG 59.692 50.000 21.95 21.95 0.00 4.10
2959 3187 1.725973 GGAAAAGACAGCGCGTTGC 60.726 57.895 23.44 15.24 46.98 4.17
2978 3206 3.628005 CGCGTCCGGTCTAATACAA 57.372 52.632 0.00 0.00 0.00 2.41
2979 3207 2.129823 CGCGTCCGGTCTAATACAAT 57.870 50.000 0.00 0.00 0.00 2.71
2980 3208 2.049228 CGCGTCCGGTCTAATACAATC 58.951 52.381 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.309621 GGGACTCACATAAGTAGTTGTAGTTGA 60.310 40.741 0.00 0.00 0.00 3.18
1 2 6.812160 GGGACTCACATAAGTAGTTGTAGTTG 59.188 42.308 0.00 0.00 0.00 3.16
3 4 6.254522 AGGGACTCACATAAGTAGTTGTAGT 58.745 40.000 0.00 0.00 0.00 2.73
4 5 6.777213 AGGGACTCACATAAGTAGTTGTAG 57.223 41.667 0.00 0.00 0.00 2.74
5 6 7.892241 ACTAAGGGACTCACATAAGTAGTTGTA 59.108 37.037 0.00 0.00 38.49 2.41
6 7 6.724905 ACTAAGGGACTCACATAAGTAGTTGT 59.275 38.462 0.00 0.00 38.49 3.32
7 8 7.171630 ACTAAGGGACTCACATAAGTAGTTG 57.828 40.000 0.00 0.00 38.49 3.16
8 9 7.793948 AACTAAGGGACTCACATAAGTAGTT 57.206 36.000 0.00 0.00 38.49 2.24
9 10 7.674772 AGAAACTAAGGGACTCACATAAGTAGT 59.325 37.037 0.00 0.00 38.49 2.73
10 11 8.068892 AGAAACTAAGGGACTCACATAAGTAG 57.931 38.462 0.00 0.00 38.49 2.57
11 12 7.894364 AGAGAAACTAAGGGACTCACATAAGTA 59.106 37.037 0.00 0.00 38.49 2.24
12 13 6.726764 AGAGAAACTAAGGGACTCACATAAGT 59.273 38.462 0.00 0.00 38.49 2.24
13 14 7.176589 AGAGAAACTAAGGGACTCACATAAG 57.823 40.000 0.00 0.00 38.49 1.73
14 15 7.554959 AAGAGAAACTAAGGGACTCACATAA 57.445 36.000 0.00 0.00 38.49 1.90
15 16 7.310485 GGAAAGAGAAACTAAGGGACTCACATA 60.310 40.741 0.00 0.00 38.49 2.29
16 17 6.441088 AAAGAGAAACTAAGGGACTCACAT 57.559 37.500 0.00 0.00 38.49 3.21
17 18 5.221661 GGAAAGAGAAACTAAGGGACTCACA 60.222 44.000 0.00 0.00 38.49 3.58
18 19 5.012251 AGGAAAGAGAAACTAAGGGACTCAC 59.988 44.000 0.00 0.00 38.49 3.51
19 20 5.155905 AGGAAAGAGAAACTAAGGGACTCA 58.844 41.667 0.00 0.00 38.49 3.41
20 21 5.482526 AGAGGAAAGAGAAACTAAGGGACTC 59.517 44.000 0.00 0.00 38.49 3.36
22 23 5.748670 AGAGGAAAGAGAAACTAAGGGAC 57.251 43.478 0.00 0.00 0.00 4.46
23 24 7.458170 ACATAAGAGGAAAGAGAAACTAAGGGA 59.542 37.037 0.00 0.00 0.00 4.20
24 25 7.625469 ACATAAGAGGAAAGAGAAACTAAGGG 58.375 38.462 0.00 0.00 0.00 3.95
25 26 8.536175 AGACATAAGAGGAAAGAGAAACTAAGG 58.464 37.037 0.00 0.00 0.00 2.69
26 27 9.936759 AAGACATAAGAGGAAAGAGAAACTAAG 57.063 33.333 0.00 0.00 0.00 2.18
27 28 9.930693 GAAGACATAAGAGGAAAGAGAAACTAA 57.069 33.333 0.00 0.00 0.00 2.24
28 29 9.315363 AGAAGACATAAGAGGAAAGAGAAACTA 57.685 33.333 0.00 0.00 0.00 2.24
29 30 8.201242 AGAAGACATAAGAGGAAAGAGAAACT 57.799 34.615 0.00 0.00 0.00 2.66
30 31 7.547722 GGAGAAGACATAAGAGGAAAGAGAAAC 59.452 40.741 0.00 0.00 0.00 2.78
31 32 7.456269 AGGAGAAGACATAAGAGGAAAGAGAAA 59.544 37.037 0.00 0.00 0.00 2.52
32 33 6.957020 AGGAGAAGACATAAGAGGAAAGAGAA 59.043 38.462 0.00 0.00 0.00 2.87
33 34 6.379703 CAGGAGAAGACATAAGAGGAAAGAGA 59.620 42.308 0.00 0.00 0.00 3.10
34 35 6.406849 CCAGGAGAAGACATAAGAGGAAAGAG 60.407 46.154 0.00 0.00 0.00 2.85
35 36 5.423610 CCAGGAGAAGACATAAGAGGAAAGA 59.576 44.000 0.00 0.00 0.00 2.52
36 37 5.423610 TCCAGGAGAAGACATAAGAGGAAAG 59.576 44.000 0.00 0.00 0.00 2.62
37 38 5.342017 TCCAGGAGAAGACATAAGAGGAAA 58.658 41.667 0.00 0.00 0.00 3.13
38 39 4.947883 TCCAGGAGAAGACATAAGAGGAA 58.052 43.478 0.00 0.00 0.00 3.36
39 40 4.541705 CTCCAGGAGAAGACATAAGAGGA 58.458 47.826 11.62 0.00 0.00 3.71
40 41 3.069443 GCTCCAGGAGAAGACATAAGAGG 59.931 52.174 21.89 0.00 0.00 3.69
41 42 3.960102 AGCTCCAGGAGAAGACATAAGAG 59.040 47.826 21.89 0.00 0.00 2.85
42 43 3.987745 AGCTCCAGGAGAAGACATAAGA 58.012 45.455 21.89 0.00 0.00 2.10
43 44 4.261994 GCTAGCTCCAGGAGAAGACATAAG 60.262 50.000 21.89 5.69 0.00 1.73
44 45 3.639094 GCTAGCTCCAGGAGAAGACATAA 59.361 47.826 21.89 0.00 0.00 1.90
45 46 3.117322 AGCTAGCTCCAGGAGAAGACATA 60.117 47.826 21.89 1.79 0.00 2.29
46 47 2.038659 GCTAGCTCCAGGAGAAGACAT 58.961 52.381 21.89 0.65 0.00 3.06
47 48 1.006519 AGCTAGCTCCAGGAGAAGACA 59.993 52.381 21.89 0.00 0.00 3.41
48 49 1.775385 AGCTAGCTCCAGGAGAAGAC 58.225 55.000 21.89 11.76 0.00 3.01
49 50 2.541233 AAGCTAGCTCCAGGAGAAGA 57.459 50.000 21.89 2.92 0.00 2.87
50 51 3.625649 AAAAGCTAGCTCCAGGAGAAG 57.374 47.619 21.89 16.59 0.00 2.85
51 52 5.091261 CTTAAAAGCTAGCTCCAGGAGAA 57.909 43.478 21.89 6.21 0.00 2.87
52 53 4.744795 CTTAAAAGCTAGCTCCAGGAGA 57.255 45.455 21.89 0.00 0.00 3.71
66 67 1.463674 AGACGGCCATGGCTTAAAAG 58.536 50.000 34.70 20.36 41.60 2.27
67 68 2.639065 CTAGACGGCCATGGCTTAAAA 58.361 47.619 34.70 17.33 41.60 1.52
68 69 1.745827 GCTAGACGGCCATGGCTTAAA 60.746 52.381 34.70 16.31 41.60 1.52
69 70 0.179056 GCTAGACGGCCATGGCTTAA 60.179 55.000 34.70 15.63 41.60 1.85
70 71 1.445942 GCTAGACGGCCATGGCTTA 59.554 57.895 34.70 20.08 41.60 3.09
71 72 2.190578 GCTAGACGGCCATGGCTT 59.809 61.111 34.70 22.68 41.60 4.35
79 80 0.676736 AGCTCTTATGGCTAGACGGC 59.323 55.000 0.00 0.00 38.36 5.68
80 81 4.585955 TTTAGCTCTTATGGCTAGACGG 57.414 45.455 0.00 0.00 42.22 4.79
100 101 3.157087 CTCACCACATGCCTAGGTTTTT 58.843 45.455 11.31 0.00 32.15 1.94
101 102 2.375174 TCTCACCACATGCCTAGGTTTT 59.625 45.455 11.31 0.00 32.15 2.43
102 103 1.985159 TCTCACCACATGCCTAGGTTT 59.015 47.619 11.31 0.00 32.15 3.27
103 104 1.656587 TCTCACCACATGCCTAGGTT 58.343 50.000 11.31 0.00 32.15 3.50
104 105 1.885049 ATCTCACCACATGCCTAGGT 58.115 50.000 11.31 0.00 35.65 3.08
105 106 2.700371 TGTATCTCACCACATGCCTAGG 59.300 50.000 3.67 3.67 0.00 3.02
106 107 4.613925 ATGTATCTCACCACATGCCTAG 57.386 45.455 0.00 0.00 34.15 3.02
107 108 4.528206 CCTATGTATCTCACCACATGCCTA 59.472 45.833 0.00 0.00 36.13 3.93
108 109 3.326006 CCTATGTATCTCACCACATGCCT 59.674 47.826 0.00 0.00 36.13 4.75
109 110 3.071602 ACCTATGTATCTCACCACATGCC 59.928 47.826 0.00 0.00 36.13 4.40
110 111 4.342862 ACCTATGTATCTCACCACATGC 57.657 45.455 0.00 0.00 36.13 4.06
111 112 6.405278 TGTACCTATGTATCTCACCACATG 57.595 41.667 0.00 0.00 36.13 3.21
112 113 7.510685 AGAATGTACCTATGTATCTCACCACAT 59.489 37.037 0.00 0.00 38.81 3.21
113 114 6.839134 AGAATGTACCTATGTATCTCACCACA 59.161 38.462 0.00 0.00 0.00 4.17
114 115 7.291411 AGAATGTACCTATGTATCTCACCAC 57.709 40.000 0.00 0.00 0.00 4.16
115 116 7.344612 ACAAGAATGTACCTATGTATCTCACCA 59.655 37.037 0.00 0.00 38.24 4.17
116 117 7.727181 ACAAGAATGTACCTATGTATCTCACC 58.273 38.462 0.00 0.00 38.24 4.02
117 118 7.591795 CGACAAGAATGTACCTATGTATCTCAC 59.408 40.741 0.00 0.00 40.74 3.51
118 119 7.501225 TCGACAAGAATGTACCTATGTATCTCA 59.499 37.037 0.00 0.00 40.74 3.27
119 120 7.872881 TCGACAAGAATGTACCTATGTATCTC 58.127 38.462 0.00 0.00 40.74 2.75
120 121 7.720074 TCTCGACAAGAATGTACCTATGTATCT 59.280 37.037 0.00 0.00 40.74 1.98
121 122 7.872881 TCTCGACAAGAATGTACCTATGTATC 58.127 38.462 0.00 0.00 40.74 2.24
122 123 7.818997 TCTCGACAAGAATGTACCTATGTAT 57.181 36.000 0.00 0.00 40.74 2.29
123 124 7.478322 GTTCTCGACAAGAATGTACCTATGTA 58.522 38.462 0.00 0.00 45.57 2.29
124 125 6.331061 GTTCTCGACAAGAATGTACCTATGT 58.669 40.000 0.00 0.00 45.57 2.29
125 126 5.455849 CGTTCTCGACAAGAATGTACCTATG 59.544 44.000 0.00 0.00 45.57 2.23
126 127 5.356190 TCGTTCTCGACAAGAATGTACCTAT 59.644 40.000 6.84 0.00 46.78 2.57
127 128 4.696877 TCGTTCTCGACAAGAATGTACCTA 59.303 41.667 6.84 0.00 46.78 3.08
128 129 3.504906 TCGTTCTCGACAAGAATGTACCT 59.495 43.478 6.84 0.00 46.78 3.08
129 130 3.829948 TCGTTCTCGACAAGAATGTACC 58.170 45.455 6.84 0.00 46.78 3.34
142 143 3.067106 CCCAATTATCCCATCGTTCTCG 58.933 50.000 0.00 0.00 38.55 4.04
143 144 3.815401 CACCCAATTATCCCATCGTTCTC 59.185 47.826 0.00 0.00 0.00 2.87
144 145 3.202151 ACACCCAATTATCCCATCGTTCT 59.798 43.478 0.00 0.00 0.00 3.01
145 146 3.551846 ACACCCAATTATCCCATCGTTC 58.448 45.455 0.00 0.00 0.00 3.95
146 147 3.053991 TGACACCCAATTATCCCATCGTT 60.054 43.478 0.00 0.00 0.00 3.85
147 148 2.507886 TGACACCCAATTATCCCATCGT 59.492 45.455 0.00 0.00 0.00 3.73
148 149 3.207265 TGACACCCAATTATCCCATCG 57.793 47.619 0.00 0.00 0.00 3.84
149 150 3.256631 GCATGACACCCAATTATCCCATC 59.743 47.826 0.00 0.00 0.00 3.51
150 151 3.233507 GCATGACACCCAATTATCCCAT 58.766 45.455 0.00 0.00 0.00 4.00
151 152 2.024560 TGCATGACACCCAATTATCCCA 60.025 45.455 0.00 0.00 0.00 4.37
152 153 2.624838 CTGCATGACACCCAATTATCCC 59.375 50.000 0.00 0.00 0.00 3.85
153 154 2.624838 CCTGCATGACACCCAATTATCC 59.375 50.000 0.00 0.00 0.00 2.59
154 155 3.554934 TCCTGCATGACACCCAATTATC 58.445 45.455 0.00 0.00 0.00 1.75
155 156 3.202818 TCTCCTGCATGACACCCAATTAT 59.797 43.478 0.00 0.00 0.00 1.28
156 157 2.575735 TCTCCTGCATGACACCCAATTA 59.424 45.455 0.00 0.00 0.00 1.40
157 158 1.355381 TCTCCTGCATGACACCCAATT 59.645 47.619 0.00 0.00 0.00 2.32
158 159 0.994247 TCTCCTGCATGACACCCAAT 59.006 50.000 0.00 0.00 0.00 3.16
159 160 0.994247 ATCTCCTGCATGACACCCAA 59.006 50.000 0.00 0.00 0.00 4.12
160 161 0.253894 CATCTCCTGCATGACACCCA 59.746 55.000 0.00 0.00 0.00 4.51
161 162 0.254178 ACATCTCCTGCATGACACCC 59.746 55.000 0.00 0.00 0.00 4.61
162 163 1.339438 ACACATCTCCTGCATGACACC 60.339 52.381 0.00 0.00 0.00 4.16
163 164 2.105006 ACACATCTCCTGCATGACAC 57.895 50.000 0.00 0.00 0.00 3.67
164 165 2.815503 CAAACACATCTCCTGCATGACA 59.184 45.455 0.00 0.00 0.00 3.58
165 166 3.076621 TCAAACACATCTCCTGCATGAC 58.923 45.455 0.00 0.00 0.00 3.06
166 167 3.421919 TCAAACACATCTCCTGCATGA 57.578 42.857 0.00 0.00 0.00 3.07
167 168 3.733988 GCATCAAACACATCTCCTGCATG 60.734 47.826 0.00 0.00 0.00 4.06
168 169 2.426024 GCATCAAACACATCTCCTGCAT 59.574 45.455 0.00 0.00 0.00 3.96
169 170 1.814394 GCATCAAACACATCTCCTGCA 59.186 47.619 0.00 0.00 0.00 4.41
170 171 1.814394 TGCATCAAACACATCTCCTGC 59.186 47.619 0.00 0.00 0.00 4.85
171 172 2.422479 CCTGCATCAAACACATCTCCTG 59.578 50.000 0.00 0.00 0.00 3.86
172 173 2.040813 ACCTGCATCAAACACATCTCCT 59.959 45.455 0.00 0.00 0.00 3.69
173 174 2.440409 ACCTGCATCAAACACATCTCC 58.560 47.619 0.00 0.00 0.00 3.71
174 175 4.877823 TCATACCTGCATCAAACACATCTC 59.122 41.667 0.00 0.00 0.00 2.75
175 176 4.847198 TCATACCTGCATCAAACACATCT 58.153 39.130 0.00 0.00 0.00 2.90
176 177 4.637534 ACTCATACCTGCATCAAACACATC 59.362 41.667 0.00 0.00 0.00 3.06
177 178 4.592942 ACTCATACCTGCATCAAACACAT 58.407 39.130 0.00 0.00 0.00 3.21
178 179 4.002982 GACTCATACCTGCATCAAACACA 58.997 43.478 0.00 0.00 0.00 3.72
179 180 4.002982 TGACTCATACCTGCATCAAACAC 58.997 43.478 0.00 0.00 0.00 3.32
180 181 4.284829 TGACTCATACCTGCATCAAACA 57.715 40.909 0.00 0.00 0.00 2.83
181 182 5.824904 ATTGACTCATACCTGCATCAAAC 57.175 39.130 0.00 0.00 32.88 2.93
182 183 5.945191 TGAATTGACTCATACCTGCATCAAA 59.055 36.000 0.00 0.00 32.88 2.69
183 184 5.499313 TGAATTGACTCATACCTGCATCAA 58.501 37.500 0.00 0.00 33.35 2.57
184 185 5.101648 TGAATTGACTCATACCTGCATCA 57.898 39.130 0.00 0.00 0.00 3.07
185 186 5.587844 ACTTGAATTGACTCATACCTGCATC 59.412 40.000 0.00 0.00 0.00 3.91
186 187 5.503927 ACTTGAATTGACTCATACCTGCAT 58.496 37.500 0.00 0.00 0.00 3.96
187 188 4.910195 ACTTGAATTGACTCATACCTGCA 58.090 39.130 0.00 0.00 0.00 4.41
188 189 6.985188 TTACTTGAATTGACTCATACCTGC 57.015 37.500 0.00 0.00 0.00 4.85
189 190 7.607991 ACCTTTACTTGAATTGACTCATACCTG 59.392 37.037 0.00 0.00 0.00 4.00
190 191 7.690256 ACCTTTACTTGAATTGACTCATACCT 58.310 34.615 0.00 0.00 0.00 3.08
191 192 7.923414 ACCTTTACTTGAATTGACTCATACC 57.077 36.000 0.00 0.00 0.00 2.73
193 194 9.667107 CCTAACCTTTACTTGAATTGACTCATA 57.333 33.333 0.00 0.00 0.00 2.15
194 195 7.121315 GCCTAACCTTTACTTGAATTGACTCAT 59.879 37.037 0.00 0.00 0.00 2.90
195 196 6.430000 GCCTAACCTTTACTTGAATTGACTCA 59.570 38.462 0.00 0.00 0.00 3.41
196 197 6.127980 GGCCTAACCTTTACTTGAATTGACTC 60.128 42.308 0.00 0.00 34.51 3.36
197 198 5.710567 GGCCTAACCTTTACTTGAATTGACT 59.289 40.000 0.00 0.00 34.51 3.41
198 199 5.105877 GGGCCTAACCTTTACTTGAATTGAC 60.106 44.000 0.84 0.00 39.10 3.18
199 200 5.014202 GGGCCTAACCTTTACTTGAATTGA 58.986 41.667 0.84 0.00 39.10 2.57
200 201 4.142469 CGGGCCTAACCTTTACTTGAATTG 60.142 45.833 0.84 0.00 39.10 2.32
201 202 4.014406 CGGGCCTAACCTTTACTTGAATT 58.986 43.478 0.84 0.00 39.10 2.17
202 203 3.009805 ACGGGCCTAACCTTTACTTGAAT 59.990 43.478 0.84 0.00 39.10 2.57
203 204 2.372837 ACGGGCCTAACCTTTACTTGAA 59.627 45.455 0.84 0.00 39.10 2.69
204 205 1.980036 ACGGGCCTAACCTTTACTTGA 59.020 47.619 0.84 0.00 39.10 3.02
205 206 2.081462 CACGGGCCTAACCTTTACTTG 58.919 52.381 0.84 0.00 39.10 3.16
206 207 1.980036 TCACGGGCCTAACCTTTACTT 59.020 47.619 0.84 0.00 39.10 2.24
207 208 1.553704 CTCACGGGCCTAACCTTTACT 59.446 52.381 0.84 0.00 39.10 2.24
208 209 2.010544 GCTCACGGGCCTAACCTTTAC 61.011 57.143 0.84 0.00 39.10 2.01
209 210 0.251073 GCTCACGGGCCTAACCTTTA 59.749 55.000 0.84 0.00 39.10 1.85
210 211 1.002502 GCTCACGGGCCTAACCTTT 60.003 57.895 0.84 0.00 39.10 3.11
211 212 2.669240 GCTCACGGGCCTAACCTT 59.331 61.111 0.84 0.00 39.10 3.50
212 213 3.771160 CGCTCACGGGCCTAACCT 61.771 66.667 0.84 0.00 39.10 3.50
231 232 1.511318 GCCGATCTCTAGCTCGCAGA 61.511 60.000 0.00 0.00 32.91 4.26
232 233 1.081509 GCCGATCTCTAGCTCGCAG 60.082 63.158 0.00 0.00 32.91 5.18
233 234 2.556459 GGCCGATCTCTAGCTCGCA 61.556 63.158 0.00 0.00 32.91 5.10
234 235 2.257067 GGCCGATCTCTAGCTCGC 59.743 66.667 0.00 0.00 32.91 5.03
235 236 2.631580 GGGGCCGATCTCTAGCTCG 61.632 68.421 0.00 0.00 33.92 5.03
236 237 0.830023 AAGGGGCCGATCTCTAGCTC 60.830 60.000 0.00 0.00 0.00 4.09
237 238 0.399233 AAAGGGGCCGATCTCTAGCT 60.399 55.000 0.00 0.00 0.00 3.32
238 239 0.470341 AAAAGGGGCCGATCTCTAGC 59.530 55.000 0.00 0.00 0.00 3.42
460 509 1.072391 TTGCGAAACGTATGCATCGT 58.928 45.000 15.41 15.41 43.45 3.73
461 510 2.289654 GATTGCGAAACGTATGCATCG 58.710 47.619 0.19 9.75 38.60 3.84
627 680 3.903646 CGCGTGCGGTATGACTAG 58.096 61.111 6.30 0.00 35.56 2.57
678 741 4.796231 CGAGGCGAACCACCGGAG 62.796 72.222 9.46 0.00 39.06 4.63
700 763 0.458025 GGGTTAGCGTCTTCGGAGTG 60.458 60.000 0.00 0.00 37.56 3.51
826 903 1.749063 CAGGTCCACGCTGTCAGTATA 59.251 52.381 0.93 0.00 0.00 1.47
827 904 0.532573 CAGGTCCACGCTGTCAGTAT 59.467 55.000 0.93 0.00 0.00 2.12
858 944 3.477224 TTTCGGTTTGGCACGCAGC 62.477 57.895 0.00 0.00 44.65 5.25
859 945 1.370414 CTTTCGGTTTGGCACGCAG 60.370 57.895 0.00 0.00 0.00 5.18
890 976 2.643551 CTGTGTTATAAGGGGTGGCTG 58.356 52.381 0.00 0.00 0.00 4.85
896 982 0.818040 GGCCGCTGTGTTATAAGGGG 60.818 60.000 0.00 1.66 46.50 4.79
907 998 0.331616 AAATTAGGGAAGGCCGCTGT 59.668 50.000 0.00 0.00 38.62 4.40
1020 1117 2.731374 CCCTCGCCGATCTTCTCC 59.269 66.667 0.00 0.00 0.00 3.71
1365 1462 3.771160 ACCCCGAGGTCGTGCATC 61.771 66.667 0.00 0.00 46.45 3.91
1383 1480 4.680237 TTGAGGTCGCGGTGCAGG 62.680 66.667 6.13 0.00 0.00 4.85
1551 1654 2.099831 GCGTCGTACTCCGTGGAG 59.900 66.667 14.35 14.35 46.91 3.86
1906 2009 4.070552 GAGAGGCTGGTCGGCGTT 62.071 66.667 6.85 0.00 44.22 4.84
1968 2077 3.325870 TGGAGCTTTCTACACAACGATG 58.674 45.455 0.00 0.00 0.00 3.84
1977 2086 2.205911 GGCGAATCTGGAGCTTTCTAC 58.794 52.381 0.00 0.00 0.00 2.59
1988 2097 4.563337 ATGTTGAATCATGGCGAATCTG 57.437 40.909 0.00 0.00 0.00 2.90
2025 2134 1.005340 CACTCTGCCAAGCGAATCTC 58.995 55.000 0.00 0.00 0.00 2.75
2068 2191 2.051518 AGAGCAGAGGACAGGAGCG 61.052 63.158 0.00 0.00 0.00 5.03
2189 2312 4.010349 GGACAACATAAACAAGAGGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
2218 2345 2.513204 ATGCTCGCTGCGATTGCT 60.513 55.556 28.31 16.03 46.63 3.91
2260 2392 4.037927 AGAGCTTTGCCCCTATTGTAGTA 58.962 43.478 0.00 0.00 0.00 1.82
2261 2393 2.846827 AGAGCTTTGCCCCTATTGTAGT 59.153 45.455 0.00 0.00 0.00 2.73
2262 2394 3.118261 TGAGAGCTTTGCCCCTATTGTAG 60.118 47.826 0.00 0.00 0.00 2.74
2271 2403 1.372087 CGGACATGAGAGCTTTGCCC 61.372 60.000 0.00 0.00 0.00 5.36
2282 2414 2.875933 GGACAGTTTTTCACGGACATGA 59.124 45.455 0.00 0.00 0.00 3.07
2292 2466 4.743493 TGAAGCAACAAGGACAGTTTTTC 58.257 39.130 0.00 0.00 0.00 2.29
2332 2522 0.179145 GTATGCTTGCAGGCAGCTTG 60.179 55.000 28.05 0.00 45.75 4.01
2336 2526 0.169672 GTGTGTATGCTTGCAGGCAG 59.830 55.000 28.05 4.40 45.75 4.85
2337 2527 0.250858 AGTGTGTATGCTTGCAGGCA 60.251 50.000 26.69 26.69 46.63 4.75
2338 2528 0.169672 CAGTGTGTATGCTTGCAGGC 59.830 55.000 14.88 14.88 0.00 4.85
2339 2529 1.736126 CTCAGTGTGTATGCTTGCAGG 59.264 52.381 0.87 0.00 0.00 4.85
2381 2575 1.876263 GCGTGGTGTTTTGGTGTGC 60.876 57.895 0.00 0.00 0.00 4.57
2382 2576 1.585002 CGCGTGGTGTTTTGGTGTG 60.585 57.895 0.00 0.00 0.00 3.82
2732 2960 1.153369 CGGGTCACCATGCGATCTT 60.153 57.895 0.00 0.00 36.13 2.40
2733 2961 2.501128 CGGGTCACCATGCGATCT 59.499 61.111 0.00 0.00 36.13 2.75
2734 2962 2.588877 CCGGGTCACCATGCGATC 60.589 66.667 0.00 0.00 36.13 3.69
2748 2976 3.550992 CGAAATCACGACGGCCGG 61.551 66.667 31.76 15.62 43.93 6.13
2750 2978 3.861263 GGCGAAATCACGACGGCC 61.861 66.667 0.00 0.00 44.46 6.13
2760 2988 1.153549 GAGTGGAGAGCGGCGAAAT 60.154 57.895 12.98 0.00 0.00 2.17
2803 3031 0.857935 GCGTGAGATATGCAGTGAGC 59.142 55.000 0.00 0.00 41.11 4.26
2804 3032 2.223665 TGAGCGTGAGATATGCAGTGAG 60.224 50.000 0.00 0.00 43.98 3.51
2805 3033 1.750778 TGAGCGTGAGATATGCAGTGA 59.249 47.619 0.00 0.00 43.98 3.41
2806 3034 2.125685 CTGAGCGTGAGATATGCAGTG 58.874 52.381 0.00 0.00 43.98 3.66
2807 3035 1.753649 ACTGAGCGTGAGATATGCAGT 59.246 47.619 0.00 0.00 43.98 4.40
2808 3036 2.505628 ACTGAGCGTGAGATATGCAG 57.494 50.000 0.00 0.00 43.98 4.41
2809 3037 2.687935 TGTACTGAGCGTGAGATATGCA 59.312 45.455 0.00 0.00 43.98 3.96
2810 3038 3.355626 TGTACTGAGCGTGAGATATGC 57.644 47.619 0.00 0.00 41.79 3.14
2811 3039 3.726235 CGTTGTACTGAGCGTGAGATATG 59.274 47.826 0.00 0.00 0.00 1.78
2812 3040 3.626217 TCGTTGTACTGAGCGTGAGATAT 59.374 43.478 0.00 0.00 0.00 1.63
2813 3041 3.004862 TCGTTGTACTGAGCGTGAGATA 58.995 45.455 0.00 0.00 0.00 1.98
2814 3042 1.810755 TCGTTGTACTGAGCGTGAGAT 59.189 47.619 0.00 0.00 0.00 2.75
2815 3043 1.232119 TCGTTGTACTGAGCGTGAGA 58.768 50.000 0.00 0.00 0.00 3.27
2816 3044 1.714460 GTTCGTTGTACTGAGCGTGAG 59.286 52.381 0.00 0.00 0.00 3.51
2817 3045 1.762419 GTTCGTTGTACTGAGCGTGA 58.238 50.000 0.00 0.00 0.00 4.35
2818 3046 0.429736 CGTTCGTTGTACTGAGCGTG 59.570 55.000 9.93 0.00 34.68 5.34
2819 3047 0.662374 CCGTTCGTTGTACTGAGCGT 60.662 55.000 14.47 0.00 37.15 5.07
2820 3048 0.386352 TCCGTTCGTTGTACTGAGCG 60.386 55.000 10.76 10.76 38.35 5.03
2821 3049 1.337821 CTCCGTTCGTTGTACTGAGC 58.662 55.000 0.00 0.00 0.00 4.26
2822 3050 1.337821 GCTCCGTTCGTTGTACTGAG 58.662 55.000 0.00 0.00 32.16 3.35
2823 3051 0.038892 GGCTCCGTTCGTTGTACTGA 60.039 55.000 0.00 0.00 0.00 3.41
2824 3052 1.342082 CGGCTCCGTTCGTTGTACTG 61.342 60.000 0.00 0.00 34.35 2.74
2825 3053 1.080974 CGGCTCCGTTCGTTGTACT 60.081 57.895 0.00 0.00 34.35 2.73
2826 3054 2.723719 GCGGCTCCGTTCGTTGTAC 61.724 63.158 10.24 0.00 42.09 2.90
2827 3055 2.431260 GCGGCTCCGTTCGTTGTA 60.431 61.111 10.24 0.00 42.09 2.41
2828 3056 4.595538 TGCGGCTCCGTTCGTTGT 62.596 61.111 10.24 0.00 42.09 3.32
2829 3057 4.072088 GTGCGGCTCCGTTCGTTG 62.072 66.667 10.24 0.00 42.09 4.10
2830 3058 4.595538 TGTGCGGCTCCGTTCGTT 62.596 61.111 10.24 0.00 42.09 3.85
2833 3061 3.712881 GTGTGTGCGGCTCCGTTC 61.713 66.667 10.24 4.36 42.09 3.95
2843 3071 2.904866 TTGGGAAGCCGTGTGTGC 60.905 61.111 0.00 0.00 0.00 4.57
2844 3072 3.343972 CTTGGGAAGCCGTGTGTG 58.656 61.111 0.00 0.00 0.00 3.82
2867 3095 4.459331 CATTGAACCACGGCGGCG 62.459 66.667 31.06 31.06 39.03 6.46
2868 3096 4.114997 CCATTGAACCACGGCGGC 62.115 66.667 13.24 0.00 39.03 6.53
2869 3097 2.671619 ACCATTGAACCACGGCGG 60.672 61.111 13.24 0.00 42.50 6.13
2870 3098 1.511318 TTCACCATTGAACCACGGCG 61.511 55.000 4.80 4.80 36.79 6.46
2871 3099 2.336341 TTCACCATTGAACCACGGC 58.664 52.632 0.00 0.00 36.79 5.68
2878 3106 1.418264 TCGTCCAGGTTCACCATTGAA 59.582 47.619 0.00 0.00 39.55 2.69
2879 3107 1.001974 CTCGTCCAGGTTCACCATTGA 59.998 52.381 0.00 0.00 38.89 2.57
2880 3108 1.442769 CTCGTCCAGGTTCACCATTG 58.557 55.000 0.00 0.00 38.89 2.82
2881 3109 0.324943 CCTCGTCCAGGTTCACCATT 59.675 55.000 0.00 0.00 37.53 3.16
2882 3110 0.544357 TCCTCGTCCAGGTTCACCAT 60.544 55.000 0.00 0.00 43.95 3.55
2883 3111 1.152419 TCCTCGTCCAGGTTCACCA 60.152 57.895 0.00 0.00 43.95 4.17
2884 3112 1.592223 CTCCTCGTCCAGGTTCACC 59.408 63.158 0.00 0.00 43.95 4.02
2885 3113 1.079750 GCTCCTCGTCCAGGTTCAC 60.080 63.158 0.00 0.00 43.95 3.18
2886 3114 2.636412 CGCTCCTCGTCCAGGTTCA 61.636 63.158 0.00 0.00 43.95 3.18
2887 3115 2.182030 CGCTCCTCGTCCAGGTTC 59.818 66.667 0.00 0.00 43.95 3.62
2902 3130 2.589014 CTGATCAAAAGAGCCAAACGC 58.411 47.619 0.00 0.00 37.98 4.84
2903 3131 2.095059 CCCTGATCAAAAGAGCCAAACG 60.095 50.000 0.00 0.00 0.00 3.60
2904 3132 3.157087 TCCCTGATCAAAAGAGCCAAAC 58.843 45.455 0.00 0.00 0.00 2.93
2905 3133 3.524095 TCCCTGATCAAAAGAGCCAAA 57.476 42.857 0.00 0.00 0.00 3.28
2906 3134 3.010472 TGATCCCTGATCAAAAGAGCCAA 59.990 43.478 4.36 0.00 44.70 4.52
2907 3135 2.577563 TGATCCCTGATCAAAAGAGCCA 59.422 45.455 4.36 0.00 44.70 4.75
2908 3136 3.287867 TGATCCCTGATCAAAAGAGCC 57.712 47.619 4.36 0.00 44.70 4.70
2917 3145 7.015682 TCCTTCTAGTTTGTATGATCCCTGATC 59.984 40.741 0.00 0.00 39.31 2.92
2918 3146 6.846505 TCCTTCTAGTTTGTATGATCCCTGAT 59.153 38.462 0.00 0.00 0.00 2.90
2919 3147 6.202331 TCCTTCTAGTTTGTATGATCCCTGA 58.798 40.000 0.00 0.00 0.00 3.86
2920 3148 6.485830 TCCTTCTAGTTTGTATGATCCCTG 57.514 41.667 0.00 0.00 0.00 4.45
2921 3149 7.510675 TTTCCTTCTAGTTTGTATGATCCCT 57.489 36.000 0.00 0.00 0.00 4.20
2922 3150 8.047310 TCTTTTCCTTCTAGTTTGTATGATCCC 58.953 37.037 0.00 0.00 0.00 3.85
2923 3151 8.884726 GTCTTTTCCTTCTAGTTTGTATGATCC 58.115 37.037 0.00 0.00 0.00 3.36
2924 3152 9.436957 TGTCTTTTCCTTCTAGTTTGTATGATC 57.563 33.333 0.00 0.00 0.00 2.92
2925 3153 9.442047 CTGTCTTTTCCTTCTAGTTTGTATGAT 57.558 33.333 0.00 0.00 0.00 2.45
2926 3154 7.387948 GCTGTCTTTTCCTTCTAGTTTGTATGA 59.612 37.037 0.00 0.00 0.00 2.15
2927 3155 7.522374 GCTGTCTTTTCCTTCTAGTTTGTATG 58.478 38.462 0.00 0.00 0.00 2.39
2928 3156 6.369065 CGCTGTCTTTTCCTTCTAGTTTGTAT 59.631 38.462 0.00 0.00 0.00 2.29
2929 3157 5.694910 CGCTGTCTTTTCCTTCTAGTTTGTA 59.305 40.000 0.00 0.00 0.00 2.41
2930 3158 4.511826 CGCTGTCTTTTCCTTCTAGTTTGT 59.488 41.667 0.00 0.00 0.00 2.83
2931 3159 4.611581 GCGCTGTCTTTTCCTTCTAGTTTG 60.612 45.833 0.00 0.00 0.00 2.93
2932 3160 3.498777 GCGCTGTCTTTTCCTTCTAGTTT 59.501 43.478 0.00 0.00 0.00 2.66
2933 3161 3.067833 GCGCTGTCTTTTCCTTCTAGTT 58.932 45.455 0.00 0.00 0.00 2.24
2934 3162 2.689646 GCGCTGTCTTTTCCTTCTAGT 58.310 47.619 0.00 0.00 0.00 2.57
2935 3163 1.656095 CGCGCTGTCTTTTCCTTCTAG 59.344 52.381 5.56 0.00 0.00 2.43
2936 3164 1.000506 ACGCGCTGTCTTTTCCTTCTA 59.999 47.619 5.73 0.00 0.00 2.10
2937 3165 0.249911 ACGCGCTGTCTTTTCCTTCT 60.250 50.000 5.73 0.00 0.00 2.85
2938 3166 0.586802 AACGCGCTGTCTTTTCCTTC 59.413 50.000 5.73 0.00 0.00 3.46
2939 3167 0.307760 CAACGCGCTGTCTTTTCCTT 59.692 50.000 5.73 0.00 0.00 3.36
2940 3168 1.941812 CAACGCGCTGTCTTTTCCT 59.058 52.632 5.73 0.00 0.00 3.36
2941 3169 1.725973 GCAACGCGCTGTCTTTTCC 60.726 57.895 11.64 0.00 37.77 3.13
2942 3170 1.725973 GGCAACGCGCTGTCTTTTC 60.726 57.895 11.64 0.00 41.91 2.29
2943 3171 2.331451 GGCAACGCGCTGTCTTTT 59.669 55.556 11.64 0.00 41.91 2.27
2955 3183 3.797145 TATTAGACCGGACGCGGCAAC 62.797 57.143 17.00 0.81 0.00 4.17
2956 3184 1.665264 TATTAGACCGGACGCGGCAA 61.665 55.000 17.00 0.00 0.00 4.52
2957 3185 2.120282 TATTAGACCGGACGCGGCA 61.120 57.895 17.00 0.00 0.00 5.69
2958 3186 1.659644 GTATTAGACCGGACGCGGC 60.660 63.158 9.46 7.53 0.00 6.53
2959 3187 0.101040 TTGTATTAGACCGGACGCGG 59.899 55.000 9.46 0.00 0.00 6.46
2960 3188 2.049228 GATTGTATTAGACCGGACGCG 58.951 52.381 9.46 3.53 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.