Multiple sequence alignment - TraesCS1A01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G358300 chr1A 100.000 2963 0 0 1 2963 540200483 540203445 0.000000e+00 5472
1 TraesCS1A01G358300 chr3A 99.313 2184 15 0 780 2963 14277723 14279906 0.000000e+00 3951
2 TraesCS1A01G358300 chr3A 94.444 180 7 3 607 784 14277519 14277697 1.050000e-69 274
3 TraesCS1A01G358300 chr4A 96.564 1368 41 4 1588 2953 651356917 651358280 0.000000e+00 2261
4 TraesCS1A01G358300 chr4A 92.793 999 30 13 628 1587 651355880 651356875 0.000000e+00 1408
5 TraesCS1A01G358300 chr4A 86.573 782 82 14 2180 2948 8981437 8980666 0.000000e+00 841
6 TraesCS1A01G358300 chr4A 82.510 789 92 25 794 1562 9052765 9052003 0.000000e+00 651
7 TraesCS1A01G358300 chr4A 81.829 809 99 16 790 1585 9048482 9047709 1.160000e-178 636
8 TraesCS1A01G358300 chr4A 85.930 597 76 7 1588 2182 9047666 9047076 5.390000e-177 630
9 TraesCS1A01G358300 chr4A 87.048 525 62 5 1588 2111 9051100 9050581 3.290000e-164 588
10 TraesCS1A01G358300 chr4A 87.333 450 41 11 2100 2538 9049249 9048805 4.410000e-138 501
11 TraesCS1A01G358300 chr1B 95.517 1316 46 8 1588 2900 268102924 268104229 0.000000e+00 2091
12 TraesCS1A01G358300 chr1B 96.380 801 25 3 790 1587 268102083 268102882 0.000000e+00 1315
13 TraesCS1A01G358300 chr1B 83.643 269 40 2 1154 1419 159190476 159190209 1.760000e-62 250
14 TraesCS1A01G358300 chr7A 87.166 748 82 11 1412 2147 576090059 576090804 0.000000e+00 837
15 TraesCS1A01G358300 chr7A 84.788 848 97 18 1313 2147 39482452 39483280 0.000000e+00 822
16 TraesCS1A01G358300 chr3B 84.788 848 97 17 1313 2147 491822990 491822162 0.000000e+00 822
17 TraesCS1A01G358300 chr4B 84.788 848 96 19 1313 2147 475798985 475798158 0.000000e+00 821
18 TraesCS1A01G358300 chr5A 86.382 749 87 12 1412 2147 637184905 637184159 0.000000e+00 804
19 TraesCS1A01G358300 chrUn 84.316 848 101 17 1313 2147 309100559 309101387 0.000000e+00 800
20 TraesCS1A01G358300 chrUn 84.316 848 101 17 1313 2147 309112638 309111810 0.000000e+00 800
21 TraesCS1A01G358300 chr5D 86.519 586 66 8 1591 2169 537912147 537911568 1.500000e-177 632
22 TraesCS1A01G358300 chr5D 83.284 341 34 10 1252 1586 537912518 537912195 2.890000e-75 292
23 TraesCS1A01G358300 chr2B 82.842 373 47 11 971 1331 457109066 457109433 4.770000e-83 318
24 TraesCS1A01G358300 chr1D 89.823 226 17 2 333 556 445003982 445004203 4.830000e-73 285
25 TraesCS1A01G358300 chr2D 86.667 105 12 2 1228 1331 386248880 386248983 6.710000e-22 115
26 TraesCS1A01G358300 chr2A 85.849 106 13 2 1227 1331 522072743 522072847 8.680000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G358300 chr1A 540200483 540203445 2962 False 5472.0 5472 100.0000 1 2963 1 chr1A.!!$F1 2962
1 TraesCS1A01G358300 chr3A 14277519 14279906 2387 False 2112.5 3951 96.8785 607 2963 2 chr3A.!!$F1 2356
2 TraesCS1A01G358300 chr4A 651355880 651358280 2400 False 1834.5 2261 94.6785 628 2953 2 chr4A.!!$F1 2325
3 TraesCS1A01G358300 chr4A 8980666 8981437 771 True 841.0 841 86.5730 2180 2948 1 chr4A.!!$R1 768
4 TraesCS1A01G358300 chr4A 9047076 9052765 5689 True 601.2 651 84.9300 790 2538 5 chr4A.!!$R2 1748
5 TraesCS1A01G358300 chr1B 268102083 268104229 2146 False 1703.0 2091 95.9485 790 2900 2 chr1B.!!$F1 2110
6 TraesCS1A01G358300 chr7A 576090059 576090804 745 False 837.0 837 87.1660 1412 2147 1 chr7A.!!$F2 735
7 TraesCS1A01G358300 chr7A 39482452 39483280 828 False 822.0 822 84.7880 1313 2147 1 chr7A.!!$F1 834
8 TraesCS1A01G358300 chr3B 491822162 491822990 828 True 822.0 822 84.7880 1313 2147 1 chr3B.!!$R1 834
9 TraesCS1A01G358300 chr4B 475798158 475798985 827 True 821.0 821 84.7880 1313 2147 1 chr4B.!!$R1 834
10 TraesCS1A01G358300 chr5A 637184159 637184905 746 True 804.0 804 86.3820 1412 2147 1 chr5A.!!$R1 735
11 TraesCS1A01G358300 chrUn 309100559 309101387 828 False 800.0 800 84.3160 1313 2147 1 chrUn.!!$F1 834
12 TraesCS1A01G358300 chrUn 309111810 309112638 828 True 800.0 800 84.3160 1313 2147 1 chrUn.!!$R1 834
13 TraesCS1A01G358300 chr5D 537911568 537912518 950 True 462.0 632 84.9015 1252 2169 2 chr5D.!!$R1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.032678 ATGGATGTGCGGACGAGATC 59.967 55.0 1.6 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 2932 1.107945 TAGGATGCACGAACGATGGA 58.892 50.0 0.14 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.957383 ACGTTCATTTGGGTTGTGC 57.043 47.368 0.00 0.00 0.00 4.57
19 20 1.107114 ACGTTCATTTGGGTTGTGCA 58.893 45.000 0.00 0.00 0.00 4.57
20 21 1.066908 ACGTTCATTTGGGTTGTGCAG 59.933 47.619 0.00 0.00 0.00 4.41
21 22 1.336440 CGTTCATTTGGGTTGTGCAGA 59.664 47.619 0.00 0.00 0.00 4.26
22 23 2.742774 GTTCATTTGGGTTGTGCAGAC 58.257 47.619 0.00 0.00 0.00 3.51
23 24 2.064434 TCATTTGGGTTGTGCAGACA 57.936 45.000 0.00 0.00 0.00 3.41
24 25 2.382882 TCATTTGGGTTGTGCAGACAA 58.617 42.857 0.00 0.00 39.88 3.18
25 26 2.762887 TCATTTGGGTTGTGCAGACAAA 59.237 40.909 1.41 1.41 43.77 2.83
26 27 3.196469 TCATTTGGGTTGTGCAGACAAAA 59.804 39.130 2.84 3.50 43.77 2.44
27 28 3.685139 TTTGGGTTGTGCAGACAAAAA 57.315 38.095 0.00 0.00 43.77 1.94
28 29 3.902881 TTGGGTTGTGCAGACAAAAAT 57.097 38.095 0.00 0.00 43.77 1.82
29 30 5.344743 TTTGGGTTGTGCAGACAAAAATA 57.655 34.783 0.00 0.00 43.77 1.40
30 31 4.314740 TGGGTTGTGCAGACAAAAATAC 57.685 40.909 0.00 0.00 43.77 1.89
31 32 3.957497 TGGGTTGTGCAGACAAAAATACT 59.043 39.130 0.00 0.00 43.77 2.12
32 33 4.202101 TGGGTTGTGCAGACAAAAATACTG 60.202 41.667 0.00 0.00 43.77 2.74
33 34 4.037446 GGGTTGTGCAGACAAAAATACTGA 59.963 41.667 0.00 0.00 43.77 3.41
34 35 5.278957 GGGTTGTGCAGACAAAAATACTGAT 60.279 40.000 0.00 0.00 43.77 2.90
35 36 5.858581 GGTTGTGCAGACAAAAATACTGATC 59.141 40.000 0.00 0.00 43.77 2.92
36 37 5.627499 TGTGCAGACAAAAATACTGATCC 57.373 39.130 0.00 0.00 34.07 3.36
37 38 5.069318 TGTGCAGACAAAAATACTGATCCA 58.931 37.500 0.00 0.00 34.07 3.41
38 39 5.534278 TGTGCAGACAAAAATACTGATCCAA 59.466 36.000 0.00 0.00 34.07 3.53
39 40 5.858581 GTGCAGACAAAAATACTGATCCAAC 59.141 40.000 0.00 0.00 34.07 3.77
40 41 5.088739 GCAGACAAAAATACTGATCCAACG 58.911 41.667 0.00 0.00 34.07 4.10
41 42 5.088739 CAGACAAAAATACTGATCCAACGC 58.911 41.667 0.00 0.00 34.07 4.84
42 43 4.078363 ACAAAAATACTGATCCAACGCG 57.922 40.909 3.53 3.53 0.00 6.01
43 44 2.825086 AAAATACTGATCCAACGCGC 57.175 45.000 5.73 0.00 0.00 6.86
44 45 1.014352 AAATACTGATCCAACGCGCC 58.986 50.000 5.73 0.00 0.00 6.53
45 46 1.151777 AATACTGATCCAACGCGCCG 61.152 55.000 5.73 0.00 0.00 6.46
46 47 2.011741 ATACTGATCCAACGCGCCGA 62.012 55.000 5.73 0.00 0.00 5.54
47 48 2.877360 TACTGATCCAACGCGCCGAC 62.877 60.000 5.73 0.00 0.00 4.79
48 49 3.989698 CTGATCCAACGCGCCGACT 62.990 63.158 5.73 0.00 0.00 4.18
49 50 3.255379 GATCCAACGCGCCGACTC 61.255 66.667 5.73 0.00 0.00 3.36
50 51 3.982372 GATCCAACGCGCCGACTCA 62.982 63.158 5.73 0.00 0.00 3.41
51 52 3.371097 ATCCAACGCGCCGACTCAT 62.371 57.895 5.73 0.00 0.00 2.90
52 53 2.852495 ATCCAACGCGCCGACTCATT 62.852 55.000 5.73 0.00 0.00 2.57
53 54 2.677003 CCAACGCGCCGACTCATTT 61.677 57.895 5.73 0.00 0.00 2.32
54 55 1.225745 CAACGCGCCGACTCATTTC 60.226 57.895 5.73 0.00 0.00 2.17
55 56 1.666553 AACGCGCCGACTCATTTCA 60.667 52.632 5.73 0.00 0.00 2.69
56 57 1.225376 AACGCGCCGACTCATTTCAA 61.225 50.000 5.73 0.00 0.00 2.69
57 58 1.225376 ACGCGCCGACTCATTTCAAA 61.225 50.000 5.73 0.00 0.00 2.69
58 59 0.110419 CGCGCCGACTCATTTCAAAA 60.110 50.000 0.00 0.00 0.00 2.44
59 60 1.661743 CGCGCCGACTCATTTCAAAAA 60.662 47.619 0.00 0.00 0.00 1.94
73 74 4.563404 AAAAACAAGTCCGCGGGA 57.437 50.000 27.83 9.51 0.00 5.14
81 82 2.822701 GTCCGCGGGACCCATTTC 60.823 66.667 27.83 1.14 46.19 2.17
82 83 4.104183 TCCGCGGGACCCATTTCC 62.104 66.667 27.83 0.00 34.52 3.13
87 88 3.739613 GGGACCCATTTCCGGCCT 61.740 66.667 5.33 0.00 36.38 5.19
88 89 2.380285 GGGACCCATTTCCGGCCTA 61.380 63.158 5.33 0.00 36.38 3.93
89 90 1.610873 GGACCCATTTCCGGCCTAA 59.389 57.895 0.00 0.00 0.00 2.69
90 91 0.033894 GGACCCATTTCCGGCCTAAA 60.034 55.000 0.00 1.31 0.00 1.85
91 92 1.411074 GGACCCATTTCCGGCCTAAAT 60.411 52.381 0.00 4.01 0.00 1.40
92 93 2.384828 GACCCATTTCCGGCCTAAATT 58.615 47.619 0.00 0.00 0.00 1.82
93 94 2.764010 GACCCATTTCCGGCCTAAATTT 59.236 45.455 0.00 0.00 0.00 1.82
94 95 3.955551 GACCCATTTCCGGCCTAAATTTA 59.044 43.478 0.00 0.00 0.00 1.40
95 96 4.552674 ACCCATTTCCGGCCTAAATTTAT 58.447 39.130 0.00 0.00 0.00 1.40
96 97 5.707495 ACCCATTTCCGGCCTAAATTTATA 58.293 37.500 0.00 0.00 0.00 0.98
97 98 6.137559 ACCCATTTCCGGCCTAAATTTATAA 58.862 36.000 0.00 0.00 0.00 0.98
98 99 6.041182 ACCCATTTCCGGCCTAAATTTATAAC 59.959 38.462 0.00 0.00 0.00 1.89
99 100 6.266786 CCCATTTCCGGCCTAAATTTATAACT 59.733 38.462 0.00 0.00 0.00 2.24
100 101 7.368059 CCATTTCCGGCCTAAATTTATAACTC 58.632 38.462 0.00 0.00 0.00 3.01
101 102 6.947644 TTTCCGGCCTAAATTTATAACTCC 57.052 37.500 0.00 0.00 0.00 3.85
102 103 5.899631 TCCGGCCTAAATTTATAACTCCT 57.100 39.130 0.00 0.00 0.00 3.69
103 104 5.617252 TCCGGCCTAAATTTATAACTCCTG 58.383 41.667 0.00 0.00 0.00 3.86
104 105 4.760204 CCGGCCTAAATTTATAACTCCTGG 59.240 45.833 0.00 0.00 0.00 4.45
105 106 5.374071 CGGCCTAAATTTATAACTCCTGGT 58.626 41.667 0.00 0.00 0.00 4.00
106 107 5.469084 CGGCCTAAATTTATAACTCCTGGTC 59.531 44.000 0.00 0.00 0.00 4.02
107 108 5.469084 GGCCTAAATTTATAACTCCTGGTCG 59.531 44.000 0.00 0.00 0.00 4.79
108 109 6.285990 GCCTAAATTTATAACTCCTGGTCGA 58.714 40.000 0.00 0.00 0.00 4.20
109 110 6.202379 GCCTAAATTTATAACTCCTGGTCGAC 59.798 42.308 7.13 7.13 0.00 4.20
110 111 7.270047 CCTAAATTTATAACTCCTGGTCGACA 58.730 38.462 18.91 2.63 0.00 4.35
111 112 7.931948 CCTAAATTTATAACTCCTGGTCGACAT 59.068 37.037 18.91 1.81 0.00 3.06
112 113 9.976511 CTAAATTTATAACTCCTGGTCGACATA 57.023 33.333 18.91 4.66 0.00 2.29
114 115 9.675464 AAATTTATAACTCCTGGTCGACATAAA 57.325 29.630 18.91 15.13 0.00 1.40
115 116 8.658499 ATTTATAACTCCTGGTCGACATAAAC 57.342 34.615 18.91 0.00 0.00 2.01
116 117 5.670792 ATAACTCCTGGTCGACATAAACA 57.329 39.130 18.91 4.53 0.00 2.83
117 118 3.594603 ACTCCTGGTCGACATAAACAG 57.405 47.619 18.91 14.14 0.00 3.16
118 119 2.271800 CTCCTGGTCGACATAAACAGC 58.728 52.381 18.91 0.00 0.00 4.40
119 120 1.066430 TCCTGGTCGACATAAACAGCC 60.066 52.381 18.91 0.00 0.00 4.85
120 121 1.066143 CCTGGTCGACATAAACAGCCT 60.066 52.381 18.91 0.00 0.00 4.58
121 122 2.271800 CTGGTCGACATAAACAGCCTC 58.728 52.381 18.91 0.00 0.00 4.70
122 123 1.899814 TGGTCGACATAAACAGCCTCT 59.100 47.619 18.91 0.00 0.00 3.69
123 124 2.301870 TGGTCGACATAAACAGCCTCTT 59.698 45.455 18.91 0.00 0.00 2.85
124 125 3.244422 TGGTCGACATAAACAGCCTCTTT 60.244 43.478 18.91 0.00 0.00 2.52
125 126 3.751698 GGTCGACATAAACAGCCTCTTTT 59.248 43.478 18.91 0.00 0.00 2.27
126 127 4.933400 GGTCGACATAAACAGCCTCTTTTA 59.067 41.667 18.91 0.00 0.00 1.52
127 128 5.163884 GGTCGACATAAACAGCCTCTTTTAC 60.164 44.000 18.91 0.00 0.00 2.01
128 129 5.638234 GTCGACATAAACAGCCTCTTTTACT 59.362 40.000 11.55 0.00 0.00 2.24
129 130 6.810182 GTCGACATAAACAGCCTCTTTTACTA 59.190 38.462 11.55 0.00 0.00 1.82
130 131 7.009357 GTCGACATAAACAGCCTCTTTTACTAG 59.991 40.741 11.55 0.00 0.00 2.57
131 132 6.812160 CGACATAAACAGCCTCTTTTACTAGT 59.188 38.462 0.00 0.00 0.00 2.57
132 133 7.331193 CGACATAAACAGCCTCTTTTACTAGTT 59.669 37.037 0.00 0.00 0.00 2.24
133 134 9.649167 GACATAAACAGCCTCTTTTACTAGTTA 57.351 33.333 0.00 0.00 0.00 2.24
134 135 9.433153 ACATAAACAGCCTCTTTTACTAGTTAC 57.567 33.333 0.00 0.00 0.00 2.50
135 136 9.654663 CATAAACAGCCTCTTTTACTAGTTACT 57.345 33.333 0.00 0.00 0.00 2.24
136 137 9.872721 ATAAACAGCCTCTTTTACTAGTTACTC 57.127 33.333 0.00 0.00 0.00 2.59
137 138 6.283544 ACAGCCTCTTTTACTAGTTACTCC 57.716 41.667 0.00 0.00 0.00 3.85
138 139 6.017830 ACAGCCTCTTTTACTAGTTACTCCT 58.982 40.000 0.00 0.00 0.00 3.69
139 140 7.180663 ACAGCCTCTTTTACTAGTTACTCCTA 58.819 38.462 0.00 0.00 0.00 2.94
140 141 7.122501 ACAGCCTCTTTTACTAGTTACTCCTAC 59.877 40.741 0.00 0.00 0.00 3.18
141 142 7.122353 CAGCCTCTTTTACTAGTTACTCCTACA 59.878 40.741 0.00 0.00 0.00 2.74
142 143 7.840210 AGCCTCTTTTACTAGTTACTCCTACAT 59.160 37.037 0.00 0.00 0.00 2.29
143 144 8.476447 GCCTCTTTTACTAGTTACTCCTACATT 58.524 37.037 0.00 0.00 0.00 2.71
150 151 9.524496 TTACTAGTTACTCCTACATTTCTGTCA 57.476 33.333 0.00 0.00 36.79 3.58
151 152 7.828712 ACTAGTTACTCCTACATTTCTGTCAC 58.171 38.462 0.00 0.00 36.79 3.67
152 153 6.038997 AGTTACTCCTACATTTCTGTCACC 57.961 41.667 0.00 0.00 36.79 4.02
153 154 5.780793 AGTTACTCCTACATTTCTGTCACCT 59.219 40.000 0.00 0.00 36.79 4.00
154 155 4.543590 ACTCCTACATTTCTGTCACCTG 57.456 45.455 0.00 0.00 36.79 4.00
155 156 3.904339 ACTCCTACATTTCTGTCACCTGT 59.096 43.478 0.00 0.00 36.79 4.00
156 157 5.084519 ACTCCTACATTTCTGTCACCTGTA 58.915 41.667 0.00 0.00 36.79 2.74
157 158 5.186021 ACTCCTACATTTCTGTCACCTGTAG 59.814 44.000 0.00 0.00 39.18 2.74
158 159 5.084519 TCCTACATTTCTGTCACCTGTAGT 58.915 41.667 0.00 0.00 38.27 2.73
159 160 6.250711 TCCTACATTTCTGTCACCTGTAGTA 58.749 40.000 0.00 0.00 38.27 1.82
160 161 6.895756 TCCTACATTTCTGTCACCTGTAGTAT 59.104 38.462 0.00 0.00 38.27 2.12
161 162 6.980978 CCTACATTTCTGTCACCTGTAGTATG 59.019 42.308 0.00 0.00 38.27 2.39
162 163 5.734720 ACATTTCTGTCACCTGTAGTATGG 58.265 41.667 0.00 0.00 0.00 2.74
163 164 5.483937 ACATTTCTGTCACCTGTAGTATGGA 59.516 40.000 0.00 0.00 0.00 3.41
164 165 6.156949 ACATTTCTGTCACCTGTAGTATGGAT 59.843 38.462 0.00 0.00 0.00 3.41
165 166 5.598416 TTCTGTCACCTGTAGTATGGATG 57.402 43.478 0.00 0.00 0.00 3.51
166 167 4.610333 TCTGTCACCTGTAGTATGGATGT 58.390 43.478 0.00 0.00 0.00 3.06
167 168 4.402474 TCTGTCACCTGTAGTATGGATGTG 59.598 45.833 0.00 0.00 0.00 3.21
168 169 3.118775 TGTCACCTGTAGTATGGATGTGC 60.119 47.826 0.00 0.00 0.00 4.57
169 170 2.100749 TCACCTGTAGTATGGATGTGCG 59.899 50.000 0.00 0.00 0.00 5.34
170 171 1.412710 ACCTGTAGTATGGATGTGCGG 59.587 52.381 0.00 0.00 0.00 5.69
171 172 1.686587 CCTGTAGTATGGATGTGCGGA 59.313 52.381 0.00 0.00 0.00 5.54
172 173 2.545952 CCTGTAGTATGGATGTGCGGAC 60.546 54.545 0.00 0.00 0.00 4.79
173 174 1.066454 TGTAGTATGGATGTGCGGACG 59.934 52.381 1.60 0.00 0.00 4.79
174 175 1.335810 GTAGTATGGATGTGCGGACGA 59.664 52.381 1.60 0.00 0.00 4.20
175 176 0.385751 AGTATGGATGTGCGGACGAG 59.614 55.000 1.60 0.00 0.00 4.18
176 177 0.384309 GTATGGATGTGCGGACGAGA 59.616 55.000 1.60 0.00 0.00 4.04
177 178 1.000163 GTATGGATGTGCGGACGAGAT 60.000 52.381 1.60 0.00 0.00 2.75
178 179 0.032678 ATGGATGTGCGGACGAGATC 59.967 55.000 1.60 0.00 0.00 2.75
179 180 1.658717 GGATGTGCGGACGAGATCG 60.659 63.158 1.60 0.00 46.33 3.69
180 181 1.355563 GATGTGCGGACGAGATCGA 59.644 57.895 9.58 0.00 43.02 3.59
181 182 0.039978 GATGTGCGGACGAGATCGAT 60.040 55.000 9.58 0.00 43.02 3.59
182 183 0.039978 ATGTGCGGACGAGATCGATC 60.040 55.000 17.91 17.91 43.02 3.69
183 184 1.370657 GTGCGGACGAGATCGATCC 60.371 63.158 21.66 12.11 43.02 3.36
184 185 1.822186 TGCGGACGAGATCGATCCA 60.822 57.895 21.66 7.91 43.02 3.41
185 186 1.359117 GCGGACGAGATCGATCCAA 59.641 57.895 21.66 0.00 43.02 3.53
186 187 0.935366 GCGGACGAGATCGATCCAAC 60.935 60.000 21.66 12.33 43.02 3.77
187 188 0.380733 CGGACGAGATCGATCCAACA 59.619 55.000 21.66 0.00 43.02 3.33
188 189 1.841450 GGACGAGATCGATCCAACAC 58.159 55.000 21.66 9.69 43.02 3.32
189 190 1.536284 GGACGAGATCGATCCAACACC 60.536 57.143 21.66 14.44 43.02 4.16
190 191 1.134367 GACGAGATCGATCCAACACCA 59.866 52.381 21.66 0.00 43.02 4.17
191 192 1.135083 ACGAGATCGATCCAACACCAC 60.135 52.381 21.66 3.27 43.02 4.16
192 193 1.135112 CGAGATCGATCCAACACCACA 60.135 52.381 21.66 0.00 43.02 4.17
193 194 2.544685 GAGATCGATCCAACACCACAG 58.455 52.381 21.66 0.00 0.00 3.66
194 195 2.166459 GAGATCGATCCAACACCACAGA 59.834 50.000 21.66 0.00 0.00 3.41
195 196 2.093973 AGATCGATCCAACACCACAGAC 60.094 50.000 21.66 0.00 0.00 3.51
196 197 0.038618 TCGATCCAACACCACAGACG 60.039 55.000 0.00 0.00 0.00 4.18
197 198 0.038618 CGATCCAACACCACAGACGA 60.039 55.000 0.00 0.00 0.00 4.20
198 199 1.429463 GATCCAACACCACAGACGAC 58.571 55.000 0.00 0.00 0.00 4.34
199 200 0.756294 ATCCAACACCACAGACGACA 59.244 50.000 0.00 0.00 0.00 4.35
200 201 0.537653 TCCAACACCACAGACGACAA 59.462 50.000 0.00 0.00 0.00 3.18
201 202 0.655733 CCAACACCACAGACGACAAC 59.344 55.000 0.00 0.00 0.00 3.32
202 203 0.300491 CAACACCACAGACGACAACG 59.700 55.000 0.00 0.00 45.75 4.10
223 224 5.164593 CGTAAAGAACGTACGTAAACAGG 57.835 43.478 23.12 8.10 46.72 4.00
224 225 4.909305 CGTAAAGAACGTACGTAAACAGGA 59.091 41.667 23.12 1.26 46.72 3.86
225 226 5.569059 CGTAAAGAACGTACGTAAACAGGAT 59.431 40.000 23.12 2.47 46.72 3.24
226 227 6.088085 CGTAAAGAACGTACGTAAACAGGATT 59.912 38.462 23.12 10.55 46.72 3.01
227 228 6.849588 AAAGAACGTACGTAAACAGGATTT 57.150 33.333 23.12 10.49 0.00 2.17
228 229 6.849588 AAGAACGTACGTAAACAGGATTTT 57.150 33.333 23.12 0.14 0.00 1.82
229 230 7.945033 AAGAACGTACGTAAACAGGATTTTA 57.055 32.000 23.12 0.00 0.00 1.52
230 231 8.538409 AAGAACGTACGTAAACAGGATTTTAT 57.462 30.769 23.12 0.00 0.00 1.40
231 232 8.538409 AGAACGTACGTAAACAGGATTTTATT 57.462 30.769 23.12 0.00 0.00 1.40
232 233 8.992073 AGAACGTACGTAAACAGGATTTTATTT 58.008 29.630 23.12 0.00 0.00 1.40
261 262 3.354089 ACGGGTATACGTAAACGGATG 57.646 47.619 10.46 0.00 46.58 3.51
262 263 2.034558 ACGGGTATACGTAAACGGATGG 59.965 50.000 10.46 0.43 46.58 3.51
263 264 2.407090 GGGTATACGTAAACGGATGGC 58.593 52.381 10.46 3.48 43.76 4.40
264 265 2.407090 GGTATACGTAAACGGATGGCC 58.593 52.381 10.46 8.57 43.76 5.36
265 266 2.036346 GGTATACGTAAACGGATGGCCT 59.964 50.000 10.46 0.00 43.76 5.19
266 267 2.234300 ATACGTAAACGGATGGCCTG 57.766 50.000 3.32 0.00 42.14 4.85
267 268 0.896923 TACGTAAACGGATGGCCTGT 59.103 50.000 3.32 0.00 44.95 4.00
268 269 0.896923 ACGTAAACGGATGGCCTGTA 59.103 50.000 3.32 0.00 44.95 2.74
269 270 1.134907 ACGTAAACGGATGGCCTGTAG 60.135 52.381 3.32 0.00 44.95 2.74
270 271 1.135527 CGTAAACGGATGGCCTGTAGA 59.864 52.381 3.32 0.00 35.37 2.59
271 272 2.798499 CGTAAACGGATGGCCTGTAGAG 60.798 54.545 3.32 0.00 35.37 2.43
272 273 1.568504 AAACGGATGGCCTGTAGAGA 58.431 50.000 3.32 0.00 0.00 3.10
273 274 0.824759 AACGGATGGCCTGTAGAGAC 59.175 55.000 3.32 0.00 0.00 3.36
274 275 1.360551 CGGATGGCCTGTAGAGACG 59.639 63.158 3.32 0.00 0.00 4.18
275 276 1.742768 GGATGGCCTGTAGAGACGG 59.257 63.158 3.32 0.00 0.00 4.79
276 277 1.068250 GATGGCCTGTAGAGACGGC 59.932 63.158 3.32 0.00 41.59 5.68
277 278 1.676678 GATGGCCTGTAGAGACGGCA 61.677 60.000 3.32 0.00 43.07 5.69
278 279 1.961180 ATGGCCTGTAGAGACGGCAC 61.961 60.000 3.32 0.00 43.07 5.01
279 280 2.352032 GGCCTGTAGAGACGGCACT 61.352 63.158 0.00 0.00 43.07 4.40
280 281 1.035932 GGCCTGTAGAGACGGCACTA 61.036 60.000 0.00 0.00 43.07 2.74
281 282 1.033574 GCCTGTAGAGACGGCACTAT 58.966 55.000 0.00 0.00 41.79 2.12
282 283 1.001158 GCCTGTAGAGACGGCACTATC 60.001 57.143 0.00 0.00 41.79 2.08
283 284 2.298610 CCTGTAGAGACGGCACTATCA 58.701 52.381 0.00 0.00 0.00 2.15
284 285 2.292016 CCTGTAGAGACGGCACTATCAG 59.708 54.545 14.09 14.09 0.00 2.90
285 286 1.676529 TGTAGAGACGGCACTATCAGC 59.323 52.381 0.00 0.00 0.00 4.26
286 287 1.950909 GTAGAGACGGCACTATCAGCT 59.049 52.381 0.00 0.00 0.00 4.24
287 288 2.350057 AGAGACGGCACTATCAGCTA 57.650 50.000 0.00 0.00 0.00 3.32
288 289 2.870175 AGAGACGGCACTATCAGCTAT 58.130 47.619 0.00 0.00 0.00 2.97
289 290 2.556189 AGAGACGGCACTATCAGCTATG 59.444 50.000 0.00 0.00 0.00 2.23
290 291 1.000283 AGACGGCACTATCAGCTATGC 60.000 52.381 0.00 0.00 37.35 3.14
291 292 0.319040 ACGGCACTATCAGCTATGCG 60.319 55.000 0.00 0.00 39.02 4.73
292 293 1.621301 CGGCACTATCAGCTATGCGC 61.621 60.000 0.00 0.00 39.02 6.09
293 294 1.621301 GGCACTATCAGCTATGCGCG 61.621 60.000 0.00 0.00 45.59 6.86
294 295 1.777819 CACTATCAGCTATGCGCGC 59.222 57.895 27.26 27.26 45.59 6.86
295 296 1.730902 ACTATCAGCTATGCGCGCG 60.731 57.895 28.44 28.44 45.59 6.86
296 297 3.064248 CTATCAGCTATGCGCGCGC 62.064 63.158 45.02 45.02 45.59 6.86
307 308 4.851114 CGCGCGCAAACTGATCCG 62.851 66.667 32.61 6.38 0.00 4.18
308 309 3.788766 GCGCGCAAACTGATCCGT 61.789 61.111 29.10 0.00 0.00 4.69
309 310 2.395690 CGCGCAAACTGATCCGTC 59.604 61.111 8.75 0.00 0.00 4.79
310 311 2.094659 CGCGCAAACTGATCCGTCT 61.095 57.895 8.75 0.00 0.00 4.18
311 312 0.800683 CGCGCAAACTGATCCGTCTA 60.801 55.000 8.75 0.00 0.00 2.59
312 313 0.924090 GCGCAAACTGATCCGTCTAG 59.076 55.000 0.30 0.00 0.00 2.43
313 314 0.924090 CGCAAACTGATCCGTCTAGC 59.076 55.000 0.00 0.00 0.00 3.42
314 315 0.924090 GCAAACTGATCCGTCTAGCG 59.076 55.000 0.00 0.33 40.95 4.26
315 316 0.924090 CAAACTGATCCGTCTAGCGC 59.076 55.000 0.00 0.00 39.71 5.92
316 317 0.525668 AAACTGATCCGTCTAGCGCG 60.526 55.000 0.00 0.00 39.71 6.86
343 344 2.858974 CCCAGTCCCCACCCAGTT 60.859 66.667 0.00 0.00 0.00 3.16
344 345 2.436109 CCAGTCCCCACCCAGTTG 59.564 66.667 0.00 0.00 0.00 3.16
345 346 2.436109 CAGTCCCCACCCAGTTGG 59.564 66.667 0.00 0.00 41.37 3.77
346 347 2.153401 CAGTCCCCACCCAGTTGGA 61.153 63.158 0.00 0.00 39.24 3.53
347 348 1.151587 AGTCCCCACCCAGTTGGAT 60.152 57.895 0.00 0.00 39.24 3.41
348 349 1.208165 AGTCCCCACCCAGTTGGATC 61.208 60.000 0.00 0.00 39.24 3.36
349 350 2.272146 CCCCACCCAGTTGGATCG 59.728 66.667 0.00 0.00 39.24 3.69
350 351 2.602676 CCCCACCCAGTTGGATCGT 61.603 63.158 0.00 0.00 39.24 3.73
351 352 1.377202 CCCACCCAGTTGGATCGTG 60.377 63.158 0.00 0.00 39.24 4.35
352 353 2.040544 CCACCCAGTTGGATCGTGC 61.041 63.158 0.00 0.00 39.24 5.34
353 354 1.003355 CACCCAGTTGGATCGTGCT 60.003 57.895 0.00 0.00 37.39 4.40
354 355 1.003355 ACCCAGTTGGATCGTGCTG 60.003 57.895 0.00 3.08 37.39 4.41
355 356 1.746615 CCCAGTTGGATCGTGCTGG 60.747 63.158 16.49 16.49 45.86 4.85
356 357 2.401766 CCAGTTGGATCGTGCTGGC 61.402 63.158 12.88 0.00 41.46 4.85
357 358 2.045926 AGTTGGATCGTGCTGGCC 60.046 61.111 0.00 0.00 0.00 5.36
358 359 3.499737 GTTGGATCGTGCTGGCCG 61.500 66.667 0.00 0.00 0.00 6.13
359 360 4.776322 TTGGATCGTGCTGGCCGG 62.776 66.667 7.41 7.41 0.00 6.13
374 375 3.591835 CGGCGTTTGTGGCAGGTT 61.592 61.111 0.00 0.00 0.00 3.50
375 376 2.335011 GGCGTTTGTGGCAGGTTC 59.665 61.111 0.00 0.00 0.00 3.62
376 377 2.335011 GCGTTTGTGGCAGGTTCC 59.665 61.111 0.00 0.00 0.00 3.62
377 378 2.637025 CGTTTGTGGCAGGTTCCG 59.363 61.111 0.00 0.00 0.00 4.30
378 379 1.890041 CGTTTGTGGCAGGTTCCGA 60.890 57.895 0.00 0.00 0.00 4.55
379 380 1.234615 CGTTTGTGGCAGGTTCCGAT 61.235 55.000 0.00 0.00 0.00 4.18
380 381 0.521735 GTTTGTGGCAGGTTCCGATC 59.478 55.000 0.00 0.00 0.00 3.69
381 382 0.953471 TTTGTGGCAGGTTCCGATCG 60.953 55.000 8.51 8.51 0.00 3.69
382 383 1.822114 TTGTGGCAGGTTCCGATCGA 61.822 55.000 18.66 0.00 0.00 3.59
383 384 1.144057 GTGGCAGGTTCCGATCGAT 59.856 57.895 18.66 0.00 0.00 3.59
384 385 0.876342 GTGGCAGGTTCCGATCGATC 60.876 60.000 18.66 15.68 0.00 3.69
385 386 1.326951 TGGCAGGTTCCGATCGATCA 61.327 55.000 24.40 3.68 0.00 2.92
386 387 0.598680 GGCAGGTTCCGATCGATCAG 60.599 60.000 24.40 14.13 0.00 2.90
387 388 0.103208 GCAGGTTCCGATCGATCAGT 59.897 55.000 24.40 0.00 0.00 3.41
388 389 1.866063 GCAGGTTCCGATCGATCAGTC 60.866 57.143 24.40 11.28 0.00 3.51
398 399 2.024871 GATCAGTCGACCGAGCGG 59.975 66.667 13.01 7.48 42.03 5.52
399 400 4.194720 ATCAGTCGACCGAGCGGC 62.195 66.667 13.01 0.00 39.32 6.53
409 410 4.803426 CGAGCGGCCTCCTGTGTC 62.803 72.222 0.00 0.00 34.49 3.67
410 411 3.695606 GAGCGGCCTCCTGTGTCA 61.696 66.667 0.00 0.00 31.68 3.58
411 412 3.941657 GAGCGGCCTCCTGTGTCAC 62.942 68.421 0.00 0.00 31.68 3.67
413 414 4.742201 CGGCCTCCTGTGTCACCG 62.742 72.222 0.00 0.00 0.00 4.94
415 416 4.314440 GCCTCCTGTGTCACCGCA 62.314 66.667 0.00 0.00 0.00 5.69
416 417 2.357517 CCTCCTGTGTCACCGCAC 60.358 66.667 0.00 0.00 39.65 5.34
417 418 2.737180 CTCCTGTGTCACCGCACT 59.263 61.111 0.00 0.00 39.89 4.40
418 419 1.665916 CTCCTGTGTCACCGCACTG 60.666 63.158 0.00 0.00 39.89 3.66
419 420 2.666190 CCTGTGTCACCGCACTGG 60.666 66.667 0.00 7.53 46.63 4.00
420 421 2.421314 CTGTGTCACCGCACTGGA 59.579 61.111 0.00 0.00 42.00 3.86
421 422 1.665916 CTGTGTCACCGCACTGGAG 60.666 63.158 0.00 0.00 42.00 3.86
422 423 3.044305 GTGTCACCGCACTGGAGC 61.044 66.667 0.00 0.00 42.00 4.70
423 424 4.314440 TGTCACCGCACTGGAGCC 62.314 66.667 0.00 0.00 42.00 4.70
424 425 4.314440 GTCACCGCACTGGAGCCA 62.314 66.667 0.00 0.00 42.00 4.75
425 426 3.321648 TCACCGCACTGGAGCCAT 61.322 61.111 0.00 0.00 42.00 4.40
426 427 1.987306 TCACCGCACTGGAGCCATA 60.987 57.895 0.00 0.00 42.00 2.74
427 428 1.146930 CACCGCACTGGAGCCATAT 59.853 57.895 0.00 0.00 42.00 1.78
428 429 0.392706 CACCGCACTGGAGCCATATA 59.607 55.000 0.00 0.00 42.00 0.86
429 430 0.681733 ACCGCACTGGAGCCATATAG 59.318 55.000 0.00 0.00 42.00 1.31
430 431 0.681733 CCGCACTGGAGCCATATAGT 59.318 55.000 0.00 0.00 42.00 2.12
431 432 1.893137 CCGCACTGGAGCCATATAGTA 59.107 52.381 0.00 0.00 42.00 1.82
432 433 2.352814 CCGCACTGGAGCCATATAGTAC 60.353 54.545 0.00 0.00 42.00 2.73
433 434 2.352814 CGCACTGGAGCCATATAGTACC 60.353 54.545 0.00 0.00 0.00 3.34
434 435 2.900546 GCACTGGAGCCATATAGTACCT 59.099 50.000 0.00 0.00 0.00 3.08
435 436 3.325135 GCACTGGAGCCATATAGTACCTT 59.675 47.826 0.00 0.00 0.00 3.50
436 437 4.561734 GCACTGGAGCCATATAGTACCTTC 60.562 50.000 0.00 0.00 0.00 3.46
437 438 3.827302 ACTGGAGCCATATAGTACCTTCG 59.173 47.826 0.00 0.00 0.00 3.79
438 439 3.827302 CTGGAGCCATATAGTACCTTCGT 59.173 47.826 0.00 0.00 0.00 3.85
439 440 3.572682 TGGAGCCATATAGTACCTTCGTG 59.427 47.826 0.00 0.00 0.00 4.35
440 441 3.056749 GGAGCCATATAGTACCTTCGTGG 60.057 52.174 0.00 0.00 42.93 4.94
449 450 4.532490 CCTTCGTGGTGTGTGTGT 57.468 55.556 0.00 0.00 0.00 3.72
450 451 2.013807 CCTTCGTGGTGTGTGTGTG 58.986 57.895 0.00 0.00 0.00 3.82
451 452 0.742990 CCTTCGTGGTGTGTGTGTGT 60.743 55.000 0.00 0.00 0.00 3.72
452 453 0.373370 CTTCGTGGTGTGTGTGTGTG 59.627 55.000 0.00 0.00 0.00 3.82
453 454 1.021920 TTCGTGGTGTGTGTGTGTGG 61.022 55.000 0.00 0.00 0.00 4.17
454 455 1.448717 CGTGGTGTGTGTGTGTGGA 60.449 57.895 0.00 0.00 0.00 4.02
455 456 0.813610 CGTGGTGTGTGTGTGTGGAT 60.814 55.000 0.00 0.00 0.00 3.41
456 457 0.662619 GTGGTGTGTGTGTGTGGATG 59.337 55.000 0.00 0.00 0.00 3.51
457 458 0.465278 TGGTGTGTGTGTGTGGATGG 60.465 55.000 0.00 0.00 0.00 3.51
458 459 1.172180 GGTGTGTGTGTGTGGATGGG 61.172 60.000 0.00 0.00 0.00 4.00
459 460 1.528076 TGTGTGTGTGTGGATGGGC 60.528 57.895 0.00 0.00 0.00 5.36
460 461 1.528076 GTGTGTGTGTGGATGGGCA 60.528 57.895 0.00 0.00 0.00 5.36
461 462 1.106351 GTGTGTGTGTGGATGGGCAA 61.106 55.000 0.00 0.00 0.00 4.52
462 463 0.396278 TGTGTGTGTGGATGGGCAAA 60.396 50.000 0.00 0.00 0.00 3.68
463 464 0.749649 GTGTGTGTGGATGGGCAAAA 59.250 50.000 0.00 0.00 0.00 2.44
464 465 1.137872 GTGTGTGTGGATGGGCAAAAA 59.862 47.619 0.00 0.00 0.00 1.94
465 466 2.045524 TGTGTGTGGATGGGCAAAAAT 58.954 42.857 0.00 0.00 0.00 1.82
466 467 2.036992 TGTGTGTGGATGGGCAAAAATC 59.963 45.455 0.00 0.00 0.00 2.17
467 468 1.622811 TGTGTGGATGGGCAAAAATCC 59.377 47.619 0.00 0.00 42.40 3.01
472 473 2.692557 TGGATGGGCAAAAATCCATACG 59.307 45.455 0.23 0.00 45.86 3.06
473 474 2.693074 GGATGGGCAAAAATCCATACGT 59.307 45.455 0.00 0.00 43.20 3.57
474 475 3.243401 GGATGGGCAAAAATCCATACGTC 60.243 47.826 0.00 0.00 43.20 4.34
475 476 2.096248 TGGGCAAAAATCCATACGTCC 58.904 47.619 0.00 0.00 0.00 4.79
476 477 1.064952 GGGCAAAAATCCATACGTCCG 59.935 52.381 0.00 0.00 0.00 4.79
477 478 1.064952 GGCAAAAATCCATACGTCCGG 59.935 52.381 0.00 0.00 0.00 5.14
478 479 1.533129 GCAAAAATCCATACGTCCGGC 60.533 52.381 0.00 0.00 0.00 6.13
479 480 1.064952 CAAAAATCCATACGTCCGGCC 59.935 52.381 0.00 0.00 0.00 6.13
480 481 0.253610 AAAATCCATACGTCCGGCCA 59.746 50.000 2.24 0.00 0.00 5.36
481 482 0.179056 AAATCCATACGTCCGGCCAG 60.179 55.000 2.24 0.00 0.00 4.85
482 483 2.660258 AATCCATACGTCCGGCCAGC 62.660 60.000 2.24 0.00 0.00 4.85
483 484 4.910585 CCATACGTCCGGCCAGCC 62.911 72.222 2.24 0.00 0.00 4.85
484 485 3.849951 CATACGTCCGGCCAGCCT 61.850 66.667 2.24 0.00 0.00 4.58
485 486 3.537874 ATACGTCCGGCCAGCCTC 61.538 66.667 2.24 0.00 0.00 4.70
493 494 4.373116 GGCCAGCCTCGAACGACA 62.373 66.667 0.00 0.00 0.00 4.35
494 495 2.811317 GCCAGCCTCGAACGACAG 60.811 66.667 0.00 0.00 0.00 3.51
495 496 2.125912 CCAGCCTCGAACGACAGG 60.126 66.667 0.00 0.00 0.00 4.00
496 497 2.125912 CAGCCTCGAACGACAGGG 60.126 66.667 0.00 1.70 0.00 4.45
497 498 2.282958 AGCCTCGAACGACAGGGA 60.283 61.111 5.41 0.00 0.00 4.20
498 499 2.126031 GCCTCGAACGACAGGGAC 60.126 66.667 5.41 0.00 0.00 4.46
499 500 2.178521 CCTCGAACGACAGGGACG 59.821 66.667 0.00 0.00 0.00 4.79
500 501 2.504244 CTCGAACGACAGGGACGC 60.504 66.667 0.00 0.00 0.00 5.19
501 502 3.966026 CTCGAACGACAGGGACGCC 62.966 68.421 0.00 0.00 0.00 5.68
526 527 4.096003 CGGGCCCCGTGAACTGAT 62.096 66.667 18.66 0.00 42.73 2.90
527 528 2.124695 GGGCCCCGTGAACTGATC 60.125 66.667 12.23 0.00 0.00 2.92
528 529 2.511600 GGCCCCGTGAACTGATCG 60.512 66.667 0.00 0.00 0.00 3.69
529 530 2.577059 GCCCCGTGAACTGATCGA 59.423 61.111 0.00 0.00 0.00 3.59
530 531 1.079405 GCCCCGTGAACTGATCGAA 60.079 57.895 0.00 0.00 0.00 3.71
531 532 0.672401 GCCCCGTGAACTGATCGAAA 60.672 55.000 0.00 0.00 0.00 3.46
532 533 2.012051 GCCCCGTGAACTGATCGAAAT 61.012 52.381 0.00 0.00 0.00 2.17
533 534 1.933853 CCCCGTGAACTGATCGAAATC 59.066 52.381 0.00 0.00 0.00 2.17
534 535 1.588404 CCCGTGAACTGATCGAAATCG 59.412 52.381 0.00 0.00 41.45 3.34
535 536 1.588404 CCGTGAACTGATCGAAATCGG 59.412 52.381 2.63 0.00 42.98 4.18
553 554 1.142474 GGTGACGTGAACTAAACCCG 58.858 55.000 0.00 0.00 0.00 5.28
554 555 1.269726 GGTGACGTGAACTAAACCCGA 60.270 52.381 0.00 0.00 0.00 5.14
555 556 2.472816 GTGACGTGAACTAAACCCGAA 58.527 47.619 0.00 0.00 0.00 4.30
556 557 3.062042 GTGACGTGAACTAAACCCGAAT 58.938 45.455 0.00 0.00 0.00 3.34
557 558 3.061322 TGACGTGAACTAAACCCGAATG 58.939 45.455 0.00 0.00 0.00 2.67
558 559 3.243805 TGACGTGAACTAAACCCGAATGA 60.244 43.478 0.00 0.00 0.00 2.57
559 560 3.930848 GACGTGAACTAAACCCGAATGAT 59.069 43.478 0.00 0.00 0.00 2.45
560 561 3.930848 ACGTGAACTAAACCCGAATGATC 59.069 43.478 0.00 0.00 0.00 2.92
578 579 3.131478 GGAACGTGGATTGGGCCG 61.131 66.667 0.00 0.00 0.00 6.13
579 580 2.359478 GAACGTGGATTGGGCCGT 60.359 61.111 0.00 0.00 34.56 5.68
580 581 2.671619 AACGTGGATTGGGCCGTG 60.672 61.111 0.00 0.00 33.22 4.94
581 582 4.715523 ACGTGGATTGGGCCGTGG 62.716 66.667 0.00 0.00 31.43 4.94
582 583 4.402528 CGTGGATTGGGCCGTGGA 62.403 66.667 0.00 0.00 0.00 4.02
583 584 2.750237 GTGGATTGGGCCGTGGAC 60.750 66.667 0.00 0.00 0.00 4.02
584 585 4.402528 TGGATTGGGCCGTGGACG 62.403 66.667 0.00 0.00 39.44 4.79
593 594 4.838152 CCGTGGACGCCCTGGATG 62.838 72.222 0.00 0.00 38.18 3.51
594 595 4.838152 CGTGGACGCCCTGGATGG 62.838 72.222 0.00 0.00 0.00 3.51
595 596 3.717294 GTGGACGCCCTGGATGGT 61.717 66.667 0.00 0.00 0.00 3.55
596 597 2.933287 TGGACGCCCTGGATGGTT 60.933 61.111 0.00 0.00 0.00 3.67
597 598 2.438434 GGACGCCCTGGATGGTTG 60.438 66.667 0.00 0.00 0.00 3.77
598 599 2.438434 GACGCCCTGGATGGTTGG 60.438 66.667 0.00 0.00 0.00 3.77
599 600 3.256960 ACGCCCTGGATGGTTGGT 61.257 61.111 0.00 0.00 0.00 3.67
600 601 1.906105 GACGCCCTGGATGGTTGGTA 61.906 60.000 0.00 0.00 0.00 3.25
601 602 1.301623 CGCCCTGGATGGTTGGTAA 59.698 57.895 0.00 0.00 0.00 2.85
602 603 0.106719 CGCCCTGGATGGTTGGTAAT 60.107 55.000 0.00 0.00 0.00 1.89
603 604 1.684869 CGCCCTGGATGGTTGGTAATT 60.685 52.381 0.00 0.00 0.00 1.40
604 605 1.756538 GCCCTGGATGGTTGGTAATTG 59.243 52.381 0.00 0.00 0.00 2.32
605 606 2.387757 CCCTGGATGGTTGGTAATTGG 58.612 52.381 0.00 0.00 0.00 3.16
606 607 2.292192 CCCTGGATGGTTGGTAATTGGT 60.292 50.000 0.00 0.00 0.00 3.67
607 608 3.440127 CCTGGATGGTTGGTAATTGGTT 58.560 45.455 0.00 0.00 0.00 3.67
608 609 3.195396 CCTGGATGGTTGGTAATTGGTTG 59.805 47.826 0.00 0.00 0.00 3.77
609 610 3.169099 TGGATGGTTGGTAATTGGTTGG 58.831 45.455 0.00 0.00 0.00 3.77
610 611 3.169908 GGATGGTTGGTAATTGGTTGGT 58.830 45.455 0.00 0.00 0.00 3.67
620 621 7.504926 TGGTAATTGGTTGGTATCTCTACTT 57.495 36.000 0.00 0.00 0.00 2.24
646 647 0.386478 GAGCAGTCCGTACGTCGTTT 60.386 55.000 15.21 0.00 37.94 3.60
657 658 1.435966 CGTCGTTTGTTCGTTCGCC 60.436 57.895 0.00 0.00 0.00 5.54
1240 1301 1.068588 GGCAAACTTTTGGGTGTCCTC 59.931 52.381 3.95 0.00 38.57 3.71
1530 1597 5.532406 TCATTCTGTTAAGAGCAGTGCTTTT 59.468 36.000 22.85 22.85 39.88 2.27
1643 2589 2.698855 AAGATGGACTGCTTATGCGT 57.301 45.000 0.00 0.00 43.34 5.24
1668 2614 5.854866 GCTGGAAGTTTTGTAATAACCGTTC 59.145 40.000 0.00 0.00 35.30 3.95
1975 2932 8.867097 TGTCTGGTCTCTAAAAGTTACTATTGT 58.133 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.336440 TCTGCACAACCCAAATGAACG 59.664 47.619 0.00 0.00 0.00 3.95
3 4 2.382882 TGTCTGCACAACCCAAATGAA 58.617 42.857 0.00 0.00 0.00 2.57
4 5 2.064434 TGTCTGCACAACCCAAATGA 57.936 45.000 0.00 0.00 0.00 2.57
5 6 2.886862 TTGTCTGCACAACCCAAATG 57.113 45.000 0.00 0.00 37.61 2.32
7 8 3.685139 TTTTTGTCTGCACAACCCAAA 57.315 38.095 0.00 0.00 42.46 3.28
8 9 3.902881 ATTTTTGTCTGCACAACCCAA 57.097 38.095 0.00 0.00 42.46 4.12
9 10 3.957497 AGTATTTTTGTCTGCACAACCCA 59.043 39.130 0.00 0.00 42.46 4.51
10 11 4.037446 TCAGTATTTTTGTCTGCACAACCC 59.963 41.667 0.00 0.00 42.46 4.11
11 12 5.181690 TCAGTATTTTTGTCTGCACAACC 57.818 39.130 0.00 0.00 42.46 3.77
12 13 5.858581 GGATCAGTATTTTTGTCTGCACAAC 59.141 40.000 0.00 0.00 42.46 3.32
13 14 5.534278 TGGATCAGTATTTTTGTCTGCACAA 59.466 36.000 0.00 0.00 40.97 3.33
14 15 5.069318 TGGATCAGTATTTTTGTCTGCACA 58.931 37.500 0.00 0.00 0.00 4.57
15 16 5.627499 TGGATCAGTATTTTTGTCTGCAC 57.373 39.130 0.00 0.00 0.00 4.57
16 17 5.334802 CGTTGGATCAGTATTTTTGTCTGCA 60.335 40.000 0.00 0.00 0.00 4.41
17 18 5.088739 CGTTGGATCAGTATTTTTGTCTGC 58.911 41.667 0.00 0.00 0.00 4.26
18 19 5.088739 GCGTTGGATCAGTATTTTTGTCTG 58.911 41.667 0.00 0.00 0.00 3.51
19 20 4.142902 CGCGTTGGATCAGTATTTTTGTCT 60.143 41.667 0.00 0.00 0.00 3.41
20 21 4.088648 CGCGTTGGATCAGTATTTTTGTC 58.911 43.478 0.00 0.00 0.00 3.18
21 22 3.669557 GCGCGTTGGATCAGTATTTTTGT 60.670 43.478 8.43 0.00 0.00 2.83
22 23 2.845967 GCGCGTTGGATCAGTATTTTTG 59.154 45.455 8.43 0.00 0.00 2.44
23 24 2.159435 GGCGCGTTGGATCAGTATTTTT 60.159 45.455 8.43 0.00 0.00 1.94
24 25 1.400494 GGCGCGTTGGATCAGTATTTT 59.600 47.619 8.43 0.00 0.00 1.82
25 26 1.014352 GGCGCGTTGGATCAGTATTT 58.986 50.000 8.43 0.00 0.00 1.40
26 27 1.151777 CGGCGCGTTGGATCAGTATT 61.152 55.000 8.43 0.00 0.00 1.89
27 28 1.591594 CGGCGCGTTGGATCAGTAT 60.592 57.895 8.43 0.00 0.00 2.12
28 29 2.202690 CGGCGCGTTGGATCAGTA 60.203 61.111 8.43 0.00 0.00 2.74
29 30 4.063967 TCGGCGCGTTGGATCAGT 62.064 61.111 8.43 0.00 0.00 3.41
30 31 3.554692 GTCGGCGCGTTGGATCAG 61.555 66.667 8.43 0.00 0.00 2.90
31 32 3.982372 GAGTCGGCGCGTTGGATCA 62.982 63.158 8.43 0.00 0.00 2.92
32 33 3.255379 GAGTCGGCGCGTTGGATC 61.255 66.667 8.43 0.00 0.00 3.36
33 34 2.852495 AATGAGTCGGCGCGTTGGAT 62.852 55.000 8.43 0.00 0.00 3.41
34 35 3.583276 AATGAGTCGGCGCGTTGGA 62.583 57.895 8.43 0.00 0.00 3.53
35 36 2.563086 GAAATGAGTCGGCGCGTTGG 62.563 60.000 8.43 0.00 0.00 3.77
36 37 1.225745 GAAATGAGTCGGCGCGTTG 60.226 57.895 8.43 0.00 0.00 4.10
37 38 1.225376 TTGAAATGAGTCGGCGCGTT 61.225 50.000 8.43 0.00 0.00 4.84
38 39 1.225376 TTTGAAATGAGTCGGCGCGT 61.225 50.000 8.43 0.00 0.00 6.01
39 40 0.110419 TTTTGAAATGAGTCGGCGCG 60.110 50.000 0.00 0.00 0.00 6.86
40 41 2.044888 TTTTTGAAATGAGTCGGCGC 57.955 45.000 0.00 0.00 0.00 6.53
56 57 4.563404 TCCCGCGGACTTGTTTTT 57.437 50.000 30.73 0.00 0.00 1.94
65 66 4.104183 GGAAATGGGTCCCGCGGA 62.104 66.667 30.73 10.38 0.00 5.54
70 71 1.928714 TTAGGCCGGAAATGGGTCCC 61.929 60.000 5.05 0.00 33.74 4.46
71 72 0.033894 TTTAGGCCGGAAATGGGTCC 60.034 55.000 5.05 0.00 0.00 4.46
72 73 2.067365 ATTTAGGCCGGAAATGGGTC 57.933 50.000 5.05 0.00 0.00 4.46
73 74 2.543037 AATTTAGGCCGGAAATGGGT 57.457 45.000 16.57 2.30 0.00 4.51
74 75 6.266786 AGTTATAAATTTAGGCCGGAAATGGG 59.733 38.462 16.57 0.00 0.00 4.00
75 76 7.284919 AGTTATAAATTTAGGCCGGAAATGG 57.715 36.000 16.57 0.00 0.00 3.16
76 77 7.230712 AGGAGTTATAAATTTAGGCCGGAAATG 59.769 37.037 16.57 0.00 0.00 2.32
77 78 7.230712 CAGGAGTTATAAATTTAGGCCGGAAAT 59.769 37.037 5.05 11.65 0.00 2.17
78 79 6.544564 CAGGAGTTATAAATTTAGGCCGGAAA 59.455 38.462 5.05 8.14 0.00 3.13
79 80 6.059484 CAGGAGTTATAAATTTAGGCCGGAA 58.941 40.000 5.05 0.00 0.00 4.30
80 81 5.455612 CCAGGAGTTATAAATTTAGGCCGGA 60.456 44.000 5.05 0.00 0.00 5.14
81 82 4.760204 CCAGGAGTTATAAATTTAGGCCGG 59.240 45.833 0.00 0.00 0.00 6.13
82 83 5.374071 ACCAGGAGTTATAAATTTAGGCCG 58.626 41.667 3.94 0.00 0.00 6.13
83 84 5.469084 CGACCAGGAGTTATAAATTTAGGCC 59.531 44.000 3.94 0.00 0.00 5.19
84 85 6.202379 GTCGACCAGGAGTTATAAATTTAGGC 59.798 42.308 3.51 0.00 0.00 3.93
85 86 7.270047 TGTCGACCAGGAGTTATAAATTTAGG 58.730 38.462 14.12 0.00 0.00 2.69
86 87 8.888579 ATGTCGACCAGGAGTTATAAATTTAG 57.111 34.615 14.12 0.00 0.00 1.85
88 89 9.675464 TTTATGTCGACCAGGAGTTATAAATTT 57.325 29.630 14.12 0.00 0.00 1.82
89 90 9.106070 GTTTATGTCGACCAGGAGTTATAAATT 57.894 33.333 14.12 0.00 0.00 1.82
90 91 8.262227 TGTTTATGTCGACCAGGAGTTATAAAT 58.738 33.333 14.12 0.00 0.00 1.40
91 92 7.613585 TGTTTATGTCGACCAGGAGTTATAAA 58.386 34.615 14.12 10.63 0.00 1.40
92 93 7.172868 TGTTTATGTCGACCAGGAGTTATAA 57.827 36.000 14.12 4.94 0.00 0.98
93 94 6.682113 GCTGTTTATGTCGACCAGGAGTTATA 60.682 42.308 14.12 0.00 0.00 0.98
94 95 5.661458 CTGTTTATGTCGACCAGGAGTTAT 58.339 41.667 14.12 0.00 0.00 1.89
95 96 4.619863 GCTGTTTATGTCGACCAGGAGTTA 60.620 45.833 14.12 0.00 0.00 2.24
96 97 3.864921 GCTGTTTATGTCGACCAGGAGTT 60.865 47.826 14.12 0.00 0.00 3.01
97 98 2.353803 GCTGTTTATGTCGACCAGGAGT 60.354 50.000 14.12 0.00 0.00 3.85
98 99 2.271800 GCTGTTTATGTCGACCAGGAG 58.728 52.381 14.12 2.76 0.00 3.69
99 100 1.066430 GGCTGTTTATGTCGACCAGGA 60.066 52.381 14.12 0.00 0.00 3.86
100 101 1.066143 AGGCTGTTTATGTCGACCAGG 60.066 52.381 14.12 0.00 0.00 4.45
101 102 2.093973 AGAGGCTGTTTATGTCGACCAG 60.094 50.000 14.12 13.27 0.00 4.00
102 103 1.899814 AGAGGCTGTTTATGTCGACCA 59.100 47.619 14.12 1.94 0.00 4.02
103 104 2.674796 AGAGGCTGTTTATGTCGACC 57.325 50.000 14.12 0.00 0.00 4.79
104 105 5.638234 AGTAAAAGAGGCTGTTTATGTCGAC 59.362 40.000 10.30 9.11 0.00 4.20
105 106 5.790593 AGTAAAAGAGGCTGTTTATGTCGA 58.209 37.500 10.30 0.00 0.00 4.20
106 107 6.812160 ACTAGTAAAAGAGGCTGTTTATGTCG 59.188 38.462 10.30 2.68 0.00 4.35
107 108 8.549338 AACTAGTAAAAGAGGCTGTTTATGTC 57.451 34.615 10.30 2.12 0.00 3.06
108 109 9.433153 GTAACTAGTAAAAGAGGCTGTTTATGT 57.567 33.333 10.30 0.00 0.00 2.29
109 110 9.654663 AGTAACTAGTAAAAGAGGCTGTTTATG 57.345 33.333 10.30 2.42 0.00 1.90
110 111 9.872721 GAGTAACTAGTAAAAGAGGCTGTTTAT 57.127 33.333 10.30 2.76 0.00 1.40
111 112 8.309656 GGAGTAACTAGTAAAAGAGGCTGTTTA 58.690 37.037 10.30 3.16 0.00 2.01
112 113 7.016366 AGGAGTAACTAGTAAAAGAGGCTGTTT 59.984 37.037 3.44 3.44 0.00 2.83
113 114 6.497606 AGGAGTAACTAGTAAAAGAGGCTGTT 59.502 38.462 0.00 0.00 0.00 3.16
114 115 6.017830 AGGAGTAACTAGTAAAAGAGGCTGT 58.982 40.000 0.00 0.00 0.00 4.40
115 116 6.532988 AGGAGTAACTAGTAAAAGAGGCTG 57.467 41.667 0.00 0.00 0.00 4.85
116 117 7.180663 TGTAGGAGTAACTAGTAAAAGAGGCT 58.819 38.462 0.00 0.00 0.00 4.58
117 118 7.401955 TGTAGGAGTAACTAGTAAAAGAGGC 57.598 40.000 0.00 0.00 0.00 4.70
124 125 9.524496 TGACAGAAATGTAGGAGTAACTAGTAA 57.476 33.333 0.00 0.00 0.00 2.24
125 126 8.954350 GTGACAGAAATGTAGGAGTAACTAGTA 58.046 37.037 0.00 0.00 0.00 1.82
126 127 7.093858 GGTGACAGAAATGTAGGAGTAACTAGT 60.094 40.741 0.00 0.00 0.00 2.57
127 128 7.122948 AGGTGACAGAAATGTAGGAGTAACTAG 59.877 40.741 0.00 0.00 0.00 2.57
128 129 6.952358 AGGTGACAGAAATGTAGGAGTAACTA 59.048 38.462 0.00 0.00 0.00 2.24
129 130 5.780793 AGGTGACAGAAATGTAGGAGTAACT 59.219 40.000 0.00 0.00 0.00 2.24
130 131 5.869888 CAGGTGACAGAAATGTAGGAGTAAC 59.130 44.000 0.00 0.00 0.00 2.50
131 132 5.542635 ACAGGTGACAGAAATGTAGGAGTAA 59.457 40.000 0.00 0.00 0.00 2.24
132 133 5.084519 ACAGGTGACAGAAATGTAGGAGTA 58.915 41.667 0.00 0.00 0.00 2.59
133 134 3.904339 ACAGGTGACAGAAATGTAGGAGT 59.096 43.478 0.00 0.00 0.00 3.85
134 135 4.543590 ACAGGTGACAGAAATGTAGGAG 57.456 45.455 0.00 0.00 0.00 3.69
135 136 5.084519 ACTACAGGTGACAGAAATGTAGGA 58.915 41.667 13.45 0.00 44.82 2.94
136 137 5.407407 ACTACAGGTGACAGAAATGTAGG 57.593 43.478 13.45 0.00 44.82 3.18
137 138 6.980978 CCATACTACAGGTGACAGAAATGTAG 59.019 42.308 8.66 8.66 45.60 2.74
138 139 6.666113 TCCATACTACAGGTGACAGAAATGTA 59.334 38.462 0.00 0.00 0.00 2.29
139 140 5.483937 TCCATACTACAGGTGACAGAAATGT 59.516 40.000 0.00 0.00 0.00 2.71
140 141 5.977635 TCCATACTACAGGTGACAGAAATG 58.022 41.667 0.00 0.00 0.00 2.32
141 142 6.156949 ACATCCATACTACAGGTGACAGAAAT 59.843 38.462 0.00 0.00 0.00 2.17
142 143 5.483937 ACATCCATACTACAGGTGACAGAAA 59.516 40.000 0.00 0.00 0.00 2.52
143 144 5.023452 ACATCCATACTACAGGTGACAGAA 58.977 41.667 0.00 0.00 0.00 3.02
144 145 4.402474 CACATCCATACTACAGGTGACAGA 59.598 45.833 0.00 0.00 0.00 3.41
145 146 4.686972 CACATCCATACTACAGGTGACAG 58.313 47.826 0.00 0.00 0.00 3.51
146 147 3.118775 GCACATCCATACTACAGGTGACA 60.119 47.826 0.00 0.00 0.00 3.58
147 148 3.458189 GCACATCCATACTACAGGTGAC 58.542 50.000 0.00 0.00 0.00 3.67
148 149 2.100749 CGCACATCCATACTACAGGTGA 59.899 50.000 0.00 0.00 0.00 4.02
149 150 2.473816 CGCACATCCATACTACAGGTG 58.526 52.381 0.00 0.00 0.00 4.00
150 151 1.412710 CCGCACATCCATACTACAGGT 59.587 52.381 0.00 0.00 0.00 4.00
151 152 1.686587 TCCGCACATCCATACTACAGG 59.313 52.381 0.00 0.00 0.00 4.00
152 153 2.743938 GTCCGCACATCCATACTACAG 58.256 52.381 0.00 0.00 0.00 2.74
153 154 1.066454 CGTCCGCACATCCATACTACA 59.934 52.381 0.00 0.00 0.00 2.74
154 155 1.335810 TCGTCCGCACATCCATACTAC 59.664 52.381 0.00 0.00 0.00 2.73
155 156 1.607148 CTCGTCCGCACATCCATACTA 59.393 52.381 0.00 0.00 0.00 1.82
156 157 0.385751 CTCGTCCGCACATCCATACT 59.614 55.000 0.00 0.00 0.00 2.12
157 158 0.384309 TCTCGTCCGCACATCCATAC 59.616 55.000 0.00 0.00 0.00 2.39
158 159 1.269723 GATCTCGTCCGCACATCCATA 59.730 52.381 0.00 0.00 0.00 2.74
159 160 0.032678 GATCTCGTCCGCACATCCAT 59.967 55.000 0.00 0.00 0.00 3.41
160 161 1.437573 GATCTCGTCCGCACATCCA 59.562 57.895 0.00 0.00 0.00 3.41
161 162 1.658717 CGATCTCGTCCGCACATCC 60.659 63.158 0.00 0.00 34.11 3.51
162 163 0.039978 ATCGATCTCGTCCGCACATC 60.040 55.000 0.00 0.00 40.80 3.06
163 164 0.039978 GATCGATCTCGTCCGCACAT 60.040 55.000 18.29 0.00 40.80 3.21
164 165 1.355563 GATCGATCTCGTCCGCACA 59.644 57.895 18.29 0.00 40.80 4.57
165 166 1.370657 GGATCGATCTCGTCCGCAC 60.371 63.158 23.96 1.23 40.80 5.34
166 167 1.381165 TTGGATCGATCTCGTCCGCA 61.381 55.000 23.96 9.50 40.15 5.69
167 168 0.935366 GTTGGATCGATCTCGTCCGC 60.935 60.000 23.96 6.97 40.15 5.54
168 169 0.380733 TGTTGGATCGATCTCGTCCG 59.619 55.000 23.96 0.00 40.15 4.79
169 170 1.536284 GGTGTTGGATCGATCTCGTCC 60.536 57.143 23.96 15.67 40.80 4.79
170 171 1.134367 TGGTGTTGGATCGATCTCGTC 59.866 52.381 23.96 8.74 40.80 4.20
171 172 1.135083 GTGGTGTTGGATCGATCTCGT 60.135 52.381 23.96 0.00 40.80 4.18
172 173 1.135112 TGTGGTGTTGGATCGATCTCG 60.135 52.381 23.96 0.00 41.45 4.04
173 174 2.166459 TCTGTGGTGTTGGATCGATCTC 59.834 50.000 23.96 14.76 0.00 2.75
174 175 2.093973 GTCTGTGGTGTTGGATCGATCT 60.094 50.000 23.96 0.00 0.00 2.75
175 176 2.271800 GTCTGTGGTGTTGGATCGATC 58.728 52.381 17.36 17.36 0.00 3.69
176 177 1.404181 CGTCTGTGGTGTTGGATCGAT 60.404 52.381 0.00 0.00 0.00 3.59
177 178 0.038618 CGTCTGTGGTGTTGGATCGA 60.039 55.000 0.00 0.00 0.00 3.59
178 179 0.038618 TCGTCTGTGGTGTTGGATCG 60.039 55.000 0.00 0.00 0.00 3.69
179 180 1.270094 TGTCGTCTGTGGTGTTGGATC 60.270 52.381 0.00 0.00 0.00 3.36
180 181 0.756294 TGTCGTCTGTGGTGTTGGAT 59.244 50.000 0.00 0.00 0.00 3.41
181 182 0.537653 TTGTCGTCTGTGGTGTTGGA 59.462 50.000 0.00 0.00 0.00 3.53
182 183 0.655733 GTTGTCGTCTGTGGTGTTGG 59.344 55.000 0.00 0.00 0.00 3.77
183 184 0.300491 CGTTGTCGTCTGTGGTGTTG 59.700 55.000 0.00 0.00 0.00 3.33
184 185 2.673074 CGTTGTCGTCTGTGGTGTT 58.327 52.632 0.00 0.00 0.00 3.32
185 186 4.412933 CGTTGTCGTCTGTGGTGT 57.587 55.556 0.00 0.00 0.00 4.16
202 203 6.934561 ATCCTGTTTACGTACGTTCTTTAC 57.065 37.500 27.92 16.50 0.00 2.01
203 204 7.945033 AAATCCTGTTTACGTACGTTCTTTA 57.055 32.000 27.92 4.73 0.00 1.85
204 205 6.849588 AAATCCTGTTTACGTACGTTCTTT 57.150 33.333 27.92 11.23 0.00 2.52
205 206 6.849588 AAAATCCTGTTTACGTACGTTCTT 57.150 33.333 27.92 3.41 0.00 2.52
206 207 8.538409 AATAAAATCCTGTTTACGTACGTTCT 57.462 30.769 27.92 3.84 0.00 3.01
231 232 9.015577 CGTTTACGTATACCCGTCTTAAAATAA 57.984 33.333 10.08 0.00 42.00 1.40
232 233 7.646130 CCGTTTACGTATACCCGTCTTAAAATA 59.354 37.037 10.08 0.00 42.00 1.40
233 234 6.475402 CCGTTTACGTATACCCGTCTTAAAAT 59.525 38.462 10.08 0.00 42.00 1.82
234 235 5.802956 CCGTTTACGTATACCCGTCTTAAAA 59.197 40.000 10.08 0.00 42.00 1.52
235 236 5.124138 TCCGTTTACGTATACCCGTCTTAAA 59.876 40.000 10.08 0.00 42.00 1.52
236 237 4.636648 TCCGTTTACGTATACCCGTCTTAA 59.363 41.667 10.08 0.00 42.00 1.85
237 238 4.193090 TCCGTTTACGTATACCCGTCTTA 58.807 43.478 10.08 0.00 42.00 2.10
238 239 3.013921 TCCGTTTACGTATACCCGTCTT 58.986 45.455 10.08 0.00 42.00 3.01
239 240 2.639065 TCCGTTTACGTATACCCGTCT 58.361 47.619 10.08 0.00 42.00 4.18
240 241 3.300009 CATCCGTTTACGTATACCCGTC 58.700 50.000 10.08 0.00 42.00 4.79
241 242 2.034558 CCATCCGTTTACGTATACCCGT 59.965 50.000 10.08 0.00 44.50 5.28
242 243 2.664916 CCATCCGTTTACGTATACCCG 58.335 52.381 10.08 4.17 37.74 5.28
243 244 2.407090 GCCATCCGTTTACGTATACCC 58.593 52.381 10.08 0.00 37.74 3.69
244 245 2.036346 AGGCCATCCGTTTACGTATACC 59.964 50.000 5.01 0.00 37.74 2.73
245 246 3.054878 CAGGCCATCCGTTTACGTATAC 58.945 50.000 5.01 6.13 37.74 1.47
246 247 2.694628 ACAGGCCATCCGTTTACGTATA 59.305 45.455 5.01 0.00 37.74 1.47
247 248 1.483415 ACAGGCCATCCGTTTACGTAT 59.517 47.619 5.01 0.00 37.74 3.06
248 249 0.896923 ACAGGCCATCCGTTTACGTA 59.103 50.000 5.01 0.00 37.74 3.57
249 250 0.896923 TACAGGCCATCCGTTTACGT 59.103 50.000 5.01 0.00 37.74 3.57
250 251 1.135527 TCTACAGGCCATCCGTTTACG 59.864 52.381 5.01 0.00 37.47 3.18
251 252 2.429610 TCTCTACAGGCCATCCGTTTAC 59.570 50.000 5.01 0.00 37.47 2.01
252 253 2.429610 GTCTCTACAGGCCATCCGTTTA 59.570 50.000 5.01 0.00 37.47 2.01
253 254 1.207329 GTCTCTACAGGCCATCCGTTT 59.793 52.381 5.01 0.00 37.47 3.60
254 255 0.824759 GTCTCTACAGGCCATCCGTT 59.175 55.000 5.01 0.00 37.47 4.44
255 256 1.384989 CGTCTCTACAGGCCATCCGT 61.385 60.000 5.01 0.00 37.47 4.69
256 257 1.360551 CGTCTCTACAGGCCATCCG 59.639 63.158 5.01 0.00 37.47 4.18
257 258 1.742768 CCGTCTCTACAGGCCATCC 59.257 63.158 5.01 0.00 0.00 3.51
258 259 1.068250 GCCGTCTCTACAGGCCATC 59.932 63.158 5.01 0.00 44.80 3.51
259 260 3.221222 GCCGTCTCTACAGGCCAT 58.779 61.111 5.01 0.00 44.80 4.40
263 264 2.292016 CTGATAGTGCCGTCTCTACAGG 59.708 54.545 0.00 0.00 0.00 4.00
264 265 2.287308 GCTGATAGTGCCGTCTCTACAG 60.287 54.545 0.00 0.00 0.00 2.74
265 266 1.676529 GCTGATAGTGCCGTCTCTACA 59.323 52.381 0.00 0.00 0.00 2.74
266 267 1.950909 AGCTGATAGTGCCGTCTCTAC 59.049 52.381 0.00 0.00 0.00 2.59
267 268 2.350057 AGCTGATAGTGCCGTCTCTA 57.650 50.000 0.00 0.00 0.00 2.43
268 269 2.350057 TAGCTGATAGTGCCGTCTCT 57.650 50.000 0.00 0.00 0.00 3.10
269 270 2.924454 GCATAGCTGATAGTGCCGTCTC 60.924 54.545 0.00 0.00 0.00 3.36
270 271 1.000283 GCATAGCTGATAGTGCCGTCT 60.000 52.381 0.00 0.00 0.00 4.18
271 272 1.423395 GCATAGCTGATAGTGCCGTC 58.577 55.000 0.00 0.00 0.00 4.79
272 273 0.319040 CGCATAGCTGATAGTGCCGT 60.319 55.000 0.00 0.00 34.20 5.68
273 274 1.621301 GCGCATAGCTGATAGTGCCG 61.621 60.000 0.30 0.00 44.04 5.69
274 275 1.621301 CGCGCATAGCTGATAGTGCC 61.621 60.000 8.75 0.00 45.59 5.01
275 276 1.777819 CGCGCATAGCTGATAGTGC 59.222 57.895 8.75 0.50 45.59 4.40
276 277 1.777819 GCGCGCATAGCTGATAGTG 59.222 57.895 29.10 0.00 45.59 2.74
277 278 1.730902 CGCGCGCATAGCTGATAGT 60.731 57.895 32.61 0.00 45.59 2.12
278 279 3.064248 GCGCGCGCATAGCTGATAG 62.064 63.158 46.11 11.55 45.59 2.08
279 280 3.105782 GCGCGCGCATAGCTGATA 61.106 61.111 46.11 0.00 45.59 2.15
290 291 4.851114 CGGATCAGTTTGCGCGCG 62.851 66.667 28.44 28.44 0.00 6.86
291 292 3.702334 GACGGATCAGTTTGCGCGC 62.702 63.158 27.26 27.26 33.30 6.86
292 293 0.800683 TAGACGGATCAGTTTGCGCG 60.801 55.000 0.00 0.00 33.30 6.86
293 294 0.924090 CTAGACGGATCAGTTTGCGC 59.076 55.000 0.00 0.00 33.30 6.09
294 295 0.924090 GCTAGACGGATCAGTTTGCG 59.076 55.000 0.00 0.00 36.43 4.85
295 296 0.924090 CGCTAGACGGATCAGTTTGC 59.076 55.000 0.00 4.62 38.44 3.68
296 297 0.924090 GCGCTAGACGGATCAGTTTG 59.076 55.000 0.00 0.00 43.93 2.93
297 298 0.525668 CGCGCTAGACGGATCAGTTT 60.526 55.000 5.56 0.00 43.93 2.66
298 299 1.064296 CGCGCTAGACGGATCAGTT 59.936 57.895 5.56 0.00 43.93 3.16
299 300 2.716244 CGCGCTAGACGGATCAGT 59.284 61.111 5.56 0.00 43.93 3.41
326 327 2.858974 AACTGGGTGGGGACTGGG 60.859 66.667 0.00 0.00 0.00 4.45
327 328 2.436109 CAACTGGGTGGGGACTGG 59.564 66.667 0.00 0.00 0.00 4.00
328 329 1.500783 ATCCAACTGGGTGGGGACTG 61.501 60.000 4.73 0.00 39.34 3.51
329 330 1.151587 ATCCAACTGGGTGGGGACT 60.152 57.895 4.73 0.00 39.34 3.85
330 331 1.303282 GATCCAACTGGGTGGGGAC 59.697 63.158 4.73 0.00 39.34 4.46
331 332 2.297895 CGATCCAACTGGGTGGGGA 61.298 63.158 4.73 0.00 39.34 4.81
332 333 2.272146 CGATCCAACTGGGTGGGG 59.728 66.667 4.73 0.00 39.34 4.96
333 334 1.377202 CACGATCCAACTGGGTGGG 60.377 63.158 4.73 0.00 39.34 4.61
334 335 2.040544 GCACGATCCAACTGGGTGG 61.041 63.158 0.00 0.00 40.33 4.61
335 336 1.003355 AGCACGATCCAACTGGGTG 60.003 57.895 0.00 0.00 38.11 4.61
336 337 1.003355 CAGCACGATCCAACTGGGT 60.003 57.895 0.00 0.00 38.11 4.51
337 338 1.746615 CCAGCACGATCCAACTGGG 60.747 63.158 12.61 0.00 44.90 4.45
338 339 3.895025 CCAGCACGATCCAACTGG 58.105 61.111 7.86 7.86 43.45 4.00
339 340 2.401766 GGCCAGCACGATCCAACTG 61.402 63.158 0.00 0.00 0.00 3.16
340 341 2.045926 GGCCAGCACGATCCAACT 60.046 61.111 0.00 0.00 0.00 3.16
341 342 3.499737 CGGCCAGCACGATCCAAC 61.500 66.667 2.24 0.00 0.00 3.77
342 343 4.776322 CCGGCCAGCACGATCCAA 62.776 66.667 2.24 0.00 0.00 3.53
357 358 3.536498 GAACCTGCCACAAACGCCG 62.536 63.158 0.00 0.00 0.00 6.46
358 359 2.335011 GAACCTGCCACAAACGCC 59.665 61.111 0.00 0.00 0.00 5.68
359 360 2.335011 GGAACCTGCCACAAACGC 59.665 61.111 0.00 0.00 0.00 4.84
360 361 1.234615 ATCGGAACCTGCCACAAACG 61.235 55.000 0.00 0.00 0.00 3.60
361 362 0.521735 GATCGGAACCTGCCACAAAC 59.478 55.000 0.00 0.00 0.00 2.93
362 363 0.953471 CGATCGGAACCTGCCACAAA 60.953 55.000 7.38 0.00 0.00 2.83
363 364 1.375396 CGATCGGAACCTGCCACAA 60.375 57.895 7.38 0.00 0.00 3.33
364 365 1.613317 ATCGATCGGAACCTGCCACA 61.613 55.000 16.41 0.00 0.00 4.17
365 366 0.876342 GATCGATCGGAACCTGCCAC 60.876 60.000 16.41 0.00 0.00 5.01
366 367 1.326951 TGATCGATCGGAACCTGCCA 61.327 55.000 20.03 0.00 0.00 4.92
367 368 0.598680 CTGATCGATCGGAACCTGCC 60.599 60.000 27.03 0.00 35.13 4.85
368 369 0.103208 ACTGATCGATCGGAACCTGC 59.897 55.000 35.18 4.68 36.97 4.85
369 370 2.126914 GACTGATCGATCGGAACCTG 57.873 55.000 35.18 12.12 36.97 4.00
381 382 2.024871 CCGCTCGGTCGACTGATC 59.975 66.667 26.62 21.31 0.00 2.92
382 383 4.194720 GCCGCTCGGTCGACTGAT 62.195 66.667 26.62 0.00 37.65 2.90
392 393 4.803426 GACACAGGAGGCCGCTCG 62.803 72.222 6.40 0.00 0.00 5.03
393 394 3.695606 TGACACAGGAGGCCGCTC 61.696 66.667 6.40 0.00 0.00 5.03
394 395 4.008933 GTGACACAGGAGGCCGCT 62.009 66.667 6.40 0.00 0.00 5.52
396 397 4.742201 CGGTGACACAGGAGGCCG 62.742 72.222 8.08 0.00 0.00 6.13
398 399 4.314440 TGCGGTGACACAGGAGGC 62.314 66.667 8.08 3.22 0.00 4.70
399 400 2.357517 GTGCGGTGACACAGGAGG 60.358 66.667 8.08 0.00 40.40 4.30
400 401 1.665916 CAGTGCGGTGACACAGGAG 60.666 63.158 8.08 0.00 43.23 3.69
401 402 2.421314 CAGTGCGGTGACACAGGA 59.579 61.111 8.08 1.15 43.23 3.86
402 403 2.666190 CCAGTGCGGTGACACAGG 60.666 66.667 8.08 0.00 43.23 4.00
403 404 1.665916 CTCCAGTGCGGTGACACAG 60.666 63.158 8.08 4.42 43.23 3.66
404 405 2.421314 CTCCAGTGCGGTGACACA 59.579 61.111 8.08 0.00 43.23 3.72
405 406 3.044305 GCTCCAGTGCGGTGACAC 61.044 66.667 0.00 0.00 41.02 3.67
406 407 4.314440 GGCTCCAGTGCGGTGACA 62.314 66.667 0.00 0.00 36.19 3.58
407 408 2.238847 TATGGCTCCAGTGCGGTGAC 62.239 60.000 0.00 0.00 36.75 3.67
408 409 1.337384 ATATGGCTCCAGTGCGGTGA 61.337 55.000 0.00 0.00 35.57 4.02
409 410 0.392706 TATATGGCTCCAGTGCGGTG 59.607 55.000 0.00 0.00 35.57 4.94
410 411 0.681733 CTATATGGCTCCAGTGCGGT 59.318 55.000 0.00 0.00 35.57 5.68
411 412 0.681733 ACTATATGGCTCCAGTGCGG 59.318 55.000 0.00 0.00 0.00 5.69
412 413 2.352814 GGTACTATATGGCTCCAGTGCG 60.353 54.545 0.00 0.00 0.00 5.34
413 414 2.900546 AGGTACTATATGGCTCCAGTGC 59.099 50.000 0.00 0.00 36.02 4.40
414 415 4.321304 CGAAGGTACTATATGGCTCCAGTG 60.321 50.000 0.00 0.00 38.49 3.66
415 416 3.827302 CGAAGGTACTATATGGCTCCAGT 59.173 47.826 0.00 0.00 38.49 4.00
416 417 3.827302 ACGAAGGTACTATATGGCTCCAG 59.173 47.826 0.00 0.00 38.49 3.86
417 418 3.572682 CACGAAGGTACTATATGGCTCCA 59.427 47.826 0.00 0.00 38.49 3.86
418 419 3.056749 CCACGAAGGTACTATATGGCTCC 60.057 52.174 0.00 0.00 38.49 4.70
419 420 4.175787 CCACGAAGGTACTATATGGCTC 57.824 50.000 0.00 0.00 38.49 4.70
432 433 0.742990 ACACACACACACCACGAAGG 60.743 55.000 0.00 0.00 45.67 3.46
433 434 0.373370 CACACACACACACCACGAAG 59.627 55.000 0.00 0.00 0.00 3.79
434 435 1.021920 CCACACACACACACCACGAA 61.022 55.000 0.00 0.00 0.00 3.85
435 436 1.448717 CCACACACACACACCACGA 60.449 57.895 0.00 0.00 0.00 4.35
436 437 0.813610 ATCCACACACACACACCACG 60.814 55.000 0.00 0.00 0.00 4.94
437 438 0.662619 CATCCACACACACACACCAC 59.337 55.000 0.00 0.00 0.00 4.16
438 439 0.465278 CCATCCACACACACACACCA 60.465 55.000 0.00 0.00 0.00 4.17
439 440 1.172180 CCCATCCACACACACACACC 61.172 60.000 0.00 0.00 0.00 4.16
440 441 1.795170 GCCCATCCACACACACACAC 61.795 60.000 0.00 0.00 0.00 3.82
441 442 1.528076 GCCCATCCACACACACACA 60.528 57.895 0.00 0.00 0.00 3.72
442 443 1.106351 TTGCCCATCCACACACACAC 61.106 55.000 0.00 0.00 0.00 3.82
443 444 0.396278 TTTGCCCATCCACACACACA 60.396 50.000 0.00 0.00 0.00 3.72
444 445 0.749649 TTTTGCCCATCCACACACAC 59.250 50.000 0.00 0.00 0.00 3.82
445 446 1.489481 TTTTTGCCCATCCACACACA 58.511 45.000 0.00 0.00 0.00 3.72
446 447 2.612721 GGATTTTTGCCCATCCACACAC 60.613 50.000 0.00 0.00 39.16 3.82
447 448 1.622811 GGATTTTTGCCCATCCACACA 59.377 47.619 0.00 0.00 39.16 3.72
448 449 1.622811 TGGATTTTTGCCCATCCACAC 59.377 47.619 0.00 0.00 43.44 3.82
449 450 2.021262 TGGATTTTTGCCCATCCACA 57.979 45.000 0.00 0.00 43.44 4.17
452 453 2.693074 ACGTATGGATTTTTGCCCATCC 59.307 45.455 0.00 0.00 41.87 3.51
453 454 3.243401 GGACGTATGGATTTTTGCCCATC 60.243 47.826 0.00 0.00 41.87 3.51
454 455 2.693074 GGACGTATGGATTTTTGCCCAT 59.307 45.455 0.00 0.00 44.67 4.00
455 456 2.096248 GGACGTATGGATTTTTGCCCA 58.904 47.619 0.00 0.00 36.79 5.36
456 457 1.064952 CGGACGTATGGATTTTTGCCC 59.935 52.381 0.00 0.00 0.00 5.36
457 458 1.064952 CCGGACGTATGGATTTTTGCC 59.935 52.381 0.00 0.00 0.00 4.52
458 459 1.533129 GCCGGACGTATGGATTTTTGC 60.533 52.381 5.05 0.00 0.00 3.68
459 460 1.064952 GGCCGGACGTATGGATTTTTG 59.935 52.381 5.05 0.00 0.00 2.44
460 461 1.340211 TGGCCGGACGTATGGATTTTT 60.340 47.619 5.05 0.00 0.00 1.94
461 462 0.253610 TGGCCGGACGTATGGATTTT 59.746 50.000 5.05 0.00 0.00 1.82
462 463 0.179056 CTGGCCGGACGTATGGATTT 60.179 55.000 5.28 0.00 0.00 2.17
463 464 1.445942 CTGGCCGGACGTATGGATT 59.554 57.895 5.28 0.00 0.00 3.01
464 465 3.138625 CTGGCCGGACGTATGGAT 58.861 61.111 5.28 0.00 0.00 3.41
465 466 3.845259 GCTGGCCGGACGTATGGA 61.845 66.667 18.31 0.00 0.00 3.41
466 467 4.910585 GGCTGGCCGGACGTATGG 62.911 72.222 18.31 1.20 0.00 2.74
467 468 3.792053 GAGGCTGGCCGGACGTATG 62.792 68.421 18.31 0.00 41.95 2.39
468 469 3.537874 GAGGCTGGCCGGACGTAT 61.538 66.667 18.31 0.00 41.95 3.06
476 477 4.373116 TGTCGTTCGAGGCTGGCC 62.373 66.667 3.00 3.00 0.00 5.36
477 478 2.811317 CTGTCGTTCGAGGCTGGC 60.811 66.667 0.00 0.00 0.00 4.85
478 479 2.125912 CCTGTCGTTCGAGGCTGG 60.126 66.667 0.00 0.00 0.00 4.85
479 480 2.125912 CCCTGTCGTTCGAGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
480 481 2.282958 TCCCTGTCGTTCGAGGCT 60.283 61.111 0.00 0.00 0.00 4.58
481 482 2.126031 GTCCCTGTCGTTCGAGGC 60.126 66.667 0.00 0.00 0.00 4.70
482 483 2.178521 CGTCCCTGTCGTTCGAGG 59.821 66.667 0.00 0.00 0.00 4.63
483 484 2.504244 GCGTCCCTGTCGTTCGAG 60.504 66.667 0.00 0.00 0.00 4.04
484 485 4.047059 GGCGTCCCTGTCGTTCGA 62.047 66.667 0.00 0.00 0.00 3.71
510 511 2.124695 GATCAGTTCACGGGGCCC 60.125 66.667 15.76 15.76 0.00 5.80
511 512 2.511600 CGATCAGTTCACGGGGCC 60.512 66.667 0.00 0.00 0.00 5.80
512 513 0.672401 TTTCGATCAGTTCACGGGGC 60.672 55.000 0.00 0.00 0.00 5.80
513 514 1.933853 GATTTCGATCAGTTCACGGGG 59.066 52.381 0.00 0.00 0.00 5.73
514 515 1.588404 CGATTTCGATCAGTTCACGGG 59.412 52.381 0.00 0.00 43.02 5.28
515 516 1.588404 CCGATTTCGATCAGTTCACGG 59.412 52.381 0.67 0.00 43.02 4.94
516 517 2.028045 CACCGATTTCGATCAGTTCACG 59.972 50.000 0.67 0.00 43.02 4.35
517 518 3.060895 GTCACCGATTTCGATCAGTTCAC 59.939 47.826 0.67 0.00 43.02 3.18
518 519 3.250744 GTCACCGATTTCGATCAGTTCA 58.749 45.455 0.67 0.00 43.02 3.18
519 520 2.279136 CGTCACCGATTTCGATCAGTTC 59.721 50.000 0.67 0.00 43.02 3.01
520 521 2.259618 CGTCACCGATTTCGATCAGTT 58.740 47.619 0.67 0.00 43.02 3.16
521 522 1.201647 ACGTCACCGATTTCGATCAGT 59.798 47.619 0.67 0.00 43.02 3.41
522 523 1.583856 CACGTCACCGATTTCGATCAG 59.416 52.381 0.67 0.00 43.02 2.90
523 524 1.200484 TCACGTCACCGATTTCGATCA 59.800 47.619 0.67 0.00 43.02 2.92
524 525 1.904144 TCACGTCACCGATTTCGATC 58.096 50.000 0.67 0.00 43.02 3.69
525 526 1.990563 GTTCACGTCACCGATTTCGAT 59.009 47.619 0.67 0.00 43.02 3.59
526 527 1.001048 AGTTCACGTCACCGATTTCGA 60.001 47.619 0.67 0.00 43.02 3.71
527 528 1.415374 AGTTCACGTCACCGATTTCG 58.585 50.000 0.00 0.00 37.88 3.46
528 529 4.376717 GGTTTAGTTCACGTCACCGATTTC 60.377 45.833 0.00 0.00 37.88 2.17
529 530 3.495753 GGTTTAGTTCACGTCACCGATTT 59.504 43.478 0.00 0.00 37.88 2.17
530 531 3.062042 GGTTTAGTTCACGTCACCGATT 58.938 45.455 0.00 0.00 37.88 3.34
531 532 2.611224 GGGTTTAGTTCACGTCACCGAT 60.611 50.000 0.00 0.00 37.88 4.18
532 533 1.269726 GGGTTTAGTTCACGTCACCGA 60.270 52.381 0.00 0.00 37.88 4.69
533 534 1.142474 GGGTTTAGTTCACGTCACCG 58.858 55.000 0.00 0.00 40.83 4.94
534 535 1.142474 CGGGTTTAGTTCACGTCACC 58.858 55.000 0.00 0.00 0.00 4.02
535 536 2.138596 TCGGGTTTAGTTCACGTCAC 57.861 50.000 0.00 0.00 33.18 3.67
536 537 2.886862 TTCGGGTTTAGTTCACGTCA 57.113 45.000 0.00 0.00 33.18 4.35
537 538 3.319755 TCATTCGGGTTTAGTTCACGTC 58.680 45.455 0.00 0.00 33.18 4.34
538 539 3.389925 TCATTCGGGTTTAGTTCACGT 57.610 42.857 0.00 0.00 33.18 4.49
539 540 3.000078 CGATCATTCGGGTTTAGTTCACG 60.000 47.826 0.00 0.00 41.74 4.35
540 541 4.516092 CGATCATTCGGGTTTAGTTCAC 57.484 45.455 0.00 0.00 41.74 3.18
552 553 1.852942 ATCCACGTTCCGATCATTCG 58.147 50.000 0.00 0.00 45.08 3.34
553 554 2.287915 CCAATCCACGTTCCGATCATTC 59.712 50.000 0.00 0.00 0.00 2.67
554 555 2.288666 CCAATCCACGTTCCGATCATT 58.711 47.619 0.00 0.00 0.00 2.57
555 556 1.475034 CCCAATCCACGTTCCGATCAT 60.475 52.381 0.00 0.00 0.00 2.45
556 557 0.107897 CCCAATCCACGTTCCGATCA 60.108 55.000 0.00 0.00 0.00 2.92
557 558 1.436983 GCCCAATCCACGTTCCGATC 61.437 60.000 0.00 0.00 0.00 3.69
558 559 1.451387 GCCCAATCCACGTTCCGAT 60.451 57.895 0.00 0.00 0.00 4.18
559 560 2.046700 GCCCAATCCACGTTCCGA 60.047 61.111 0.00 0.00 0.00 4.55
560 561 3.131478 GGCCCAATCCACGTTCCG 61.131 66.667 0.00 0.00 0.00 4.30
561 562 3.131478 CGGCCCAATCCACGTTCC 61.131 66.667 0.00 0.00 0.00 3.62
562 563 2.359478 ACGGCCCAATCCACGTTC 60.359 61.111 0.00 0.00 35.90 3.95
563 564 2.671619 CACGGCCCAATCCACGTT 60.672 61.111 0.00 0.00 37.48 3.99
564 565 4.715523 CCACGGCCCAATCCACGT 62.716 66.667 0.00 0.00 40.60 4.49
565 566 4.402528 TCCACGGCCCAATCCACG 62.403 66.667 0.00 0.00 0.00 4.94
566 567 2.750237 GTCCACGGCCCAATCCAC 60.750 66.667 0.00 0.00 0.00 4.02
567 568 4.402528 CGTCCACGGCCCAATCCA 62.403 66.667 0.00 0.00 35.37 3.41
576 577 4.838152 CATCCAGGGCGTCCACGG 62.838 72.222 9.71 8.83 40.23 4.94
577 578 4.838152 CCATCCAGGGCGTCCACG 62.838 72.222 9.71 0.00 43.27 4.94
578 579 3.268103 AACCATCCAGGGCGTCCAC 62.268 63.158 9.71 0.00 43.89 4.02
579 580 2.933287 AACCATCCAGGGCGTCCA 60.933 61.111 9.71 0.00 43.89 4.02
580 581 2.438434 CAACCATCCAGGGCGTCC 60.438 66.667 0.00 0.00 43.89 4.79
581 582 1.906105 TACCAACCATCCAGGGCGTC 61.906 60.000 0.00 0.00 43.89 5.19
582 583 1.493854 TTACCAACCATCCAGGGCGT 61.494 55.000 0.00 0.00 43.89 5.68
583 584 0.106719 ATTACCAACCATCCAGGGCG 60.107 55.000 0.00 0.00 43.89 6.13
584 585 1.756538 CAATTACCAACCATCCAGGGC 59.243 52.381 0.00 0.00 43.89 5.19
585 586 2.292192 ACCAATTACCAACCATCCAGGG 60.292 50.000 0.00 0.00 43.89 4.45
586 587 3.100207 ACCAATTACCAACCATCCAGG 57.900 47.619 0.00 0.00 45.67 4.45
587 588 3.195396 CCAACCAATTACCAACCATCCAG 59.805 47.826 0.00 0.00 0.00 3.86
588 589 3.169099 CCAACCAATTACCAACCATCCA 58.831 45.455 0.00 0.00 0.00 3.41
589 590 3.169908 ACCAACCAATTACCAACCATCC 58.830 45.455 0.00 0.00 0.00 3.51
590 591 5.891551 AGATACCAACCAATTACCAACCATC 59.108 40.000 0.00 0.00 0.00 3.51
591 592 5.837829 AGATACCAACCAATTACCAACCAT 58.162 37.500 0.00 0.00 0.00 3.55
592 593 5.014755 AGAGATACCAACCAATTACCAACCA 59.985 40.000 0.00 0.00 0.00 3.67
593 594 5.506708 AGAGATACCAACCAATTACCAACC 58.493 41.667 0.00 0.00 0.00 3.77
594 595 7.336396 AGTAGAGATACCAACCAATTACCAAC 58.664 38.462 0.00 0.00 0.00 3.77
595 596 7.504926 AGTAGAGATACCAACCAATTACCAA 57.495 36.000 0.00 0.00 0.00 3.67
596 597 7.504926 AAGTAGAGATACCAACCAATTACCA 57.495 36.000 0.00 0.00 0.00 3.25
602 603 9.496710 TCCTTTATAAGTAGAGATACCAACCAA 57.503 33.333 0.00 0.00 0.00 3.67
603 604 9.144298 CTCCTTTATAAGTAGAGATACCAACCA 57.856 37.037 3.56 0.00 0.00 3.67
604 605 8.089597 GCTCCTTTATAAGTAGAGATACCAACC 58.910 40.741 10.86 0.00 0.00 3.77
605 606 8.639761 TGCTCCTTTATAAGTAGAGATACCAAC 58.360 37.037 10.86 0.00 0.00 3.77
606 607 8.777578 TGCTCCTTTATAAGTAGAGATACCAA 57.222 34.615 10.86 0.00 0.00 3.67
607 608 8.005388 ACTGCTCCTTTATAAGTAGAGATACCA 58.995 37.037 10.86 1.93 0.00 3.25
608 609 8.411991 ACTGCTCCTTTATAAGTAGAGATACC 57.588 38.462 10.86 0.00 0.00 2.73
609 610 8.517056 GGACTGCTCCTTTATAAGTAGAGATAC 58.483 40.741 10.86 0.00 33.07 2.24
610 611 7.390996 CGGACTGCTCCTTTATAAGTAGAGATA 59.609 40.741 10.86 1.71 33.79 1.98
620 621 3.282021 ACGTACGGACTGCTCCTTTATA 58.718 45.455 21.06 0.00 33.79 0.98
657 658 3.242291 GGATAGGGTGGGAGGCGG 61.242 72.222 0.00 0.00 0.00 6.13
670 671 1.000843 CGATGGTGGCTTCGATGGATA 59.999 52.381 0.00 0.00 37.55 2.59
1240 1301 1.196581 TCATCAATCCGCAAACACACG 59.803 47.619 0.00 0.00 0.00 4.49
1530 1597 4.943093 ACAGCAAGCATCATACACATAACA 59.057 37.500 0.00 0.00 0.00 2.41
1643 2589 4.822896 ACGGTTATTACAAAACTTCCAGCA 59.177 37.500 0.00 0.00 0.00 4.41
1668 2614 6.204108 TCTCATGCTGATAACATATGTGCAAG 59.796 38.462 18.32 14.96 32.66 4.01
1975 2932 1.107945 TAGGATGCACGAACGATGGA 58.892 50.000 0.14 0.00 0.00 3.41
2310 6702 3.933332 GTCAAAATACCTCAAGGAGACCG 59.067 47.826 2.30 0.00 38.94 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.