Multiple sequence alignment - TraesCS1A01G358100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G358100 chr1A 100.000 2663 0 0 1 2663 540190238 540192900 0.000000e+00 4918.0
1 TraesCS1A01G358100 chr1A 93.743 895 46 5 767 1661 540287651 540286767 0.000000e+00 1334.0
2 TraesCS1A01G358100 chr1A 94.554 202 11 0 1460 1661 540256144 540255943 1.990000e-81 313.0
3 TraesCS1A01G358100 chr1A 76.181 529 100 14 2140 2661 99862687 99863196 3.400000e-64 255.0
4 TraesCS1A01G358100 chr1A 91.270 126 8 3 618 742 540287823 540287700 4.560000e-38 169.0
5 TraesCS1A01G358100 chr1A 94.000 50 3 0 573 622 540190718 540190767 2.840000e-10 76.8
6 TraesCS1A01G358100 chr1A 94.000 50 3 0 481 530 540190810 540190859 2.840000e-10 76.8
7 TraesCS1A01G358100 chr1A 100.000 31 0 0 1924 1954 540192113 540192143 1.030000e-04 58.4
8 TraesCS1A01G358100 chr1A 100.000 31 0 0 1876 1906 540192161 540192191 1.030000e-04 58.4
9 TraesCS1A01G358100 chr1D 87.854 1943 140 53 767 2661 444891805 444893699 0.000000e+00 2193.0
10 TraesCS1A01G358100 chr1D 93.584 904 49 1 767 1661 445040780 445039877 0.000000e+00 1339.0
11 TraesCS1A01G358100 chr1D 81.570 293 48 4 2375 2661 139973522 139973814 1.230000e-58 237.0
12 TraesCS1A01G358100 chr1D 89.231 130 10 4 615 742 445040966 445040839 2.740000e-35 159.0
13 TraesCS1A01G358100 chr1D 100.000 31 0 0 1876 1906 444892947 444892977 1.030000e-04 58.4
14 TraesCS1A01G358100 chr1B 91.720 930 53 10 767 1673 605432588 605433516 0.000000e+00 1269.0
15 TraesCS1A01G358100 chr1B 87.174 881 49 12 618 1458 605584943 605584087 0.000000e+00 942.0
16 TraesCS1A01G358100 chr1B 85.650 446 58 5 1 441 48992957 48993401 5.190000e-127 464.0
17 TraesCS1A01G358100 chr1B 99.010 202 2 0 1460 1661 605583951 605583750 1.950000e-96 363.0
18 TraesCS1A01G358100 chr1B 80.435 368 61 7 2302 2661 198649952 198649588 1.210000e-68 270.0
19 TraesCS1A01G358100 chr1B 83.333 312 24 11 1666 1953 605435290 605435597 2.030000e-66 263.0
20 TraesCS1A01G358100 chr4A 86.811 508 43 11 1 486 740942717 740943222 1.800000e-151 545.0
21 TraesCS1A01G358100 chr7D 88.262 443 49 2 1 441 402321817 402322258 6.530000e-146 527.0
22 TraesCS1A01G358100 chr7D 80.042 481 74 14 2191 2661 540118762 540118294 1.180000e-88 337.0
23 TraesCS1A01G358100 chr7D 76.071 560 100 23 2117 2661 590059164 590059704 7.310000e-66 261.0
24 TraesCS1A01G358100 chr2D 88.128 438 50 1 1 436 34001942 34001505 1.090000e-143 520.0
25 TraesCS1A01G358100 chr3D 87.016 439 47 5 5 441 496346216 496345786 1.110000e-133 486.0
26 TraesCS1A01G358100 chr3D 86.682 443 52 3 5 441 185336304 185336745 3.990000e-133 484.0
27 TraesCS1A01G358100 chr3D 75.610 492 87 18 2185 2663 141203445 141202974 2.080000e-51 213.0
28 TraesCS1A01G358100 chr3D 92.308 52 4 0 1394 1445 71759819 71759870 1.020000e-09 75.0
29 TraesCS1A01G358100 chr6D 86.682 443 52 5 5 441 45814647 45814206 3.990000e-133 484.0
30 TraesCS1A01G358100 chr6D 86.130 447 54 5 1 441 103038926 103039370 2.400000e-130 475.0
31 TraesCS1A01G358100 chr3A 86.744 430 50 4 1 425 357085981 357086408 3.100000e-129 472.0
32 TraesCS1A01G358100 chr3A 92.308 52 4 0 1394 1445 83978018 83978069 1.020000e-09 75.0
33 TraesCS1A01G358100 chr5D 79.137 556 95 12 2112 2661 383741619 383742159 5.420000e-97 364.0
34 TraesCS1A01G358100 chr2A 80.962 478 76 11 2117 2585 491531079 491531550 5.420000e-97 364.0
35 TraesCS1A01G358100 chr2A 74.274 482 75 29 2137 2585 779638172 779637707 9.870000e-35 158.0
36 TraesCS1A01G358100 chr4D 79.487 468 73 14 2202 2661 337414360 337414812 7.160000e-81 311.0
37 TraesCS1A01G358100 chr7A 77.215 474 71 11 2203 2661 98104558 98104107 2.650000e-60 243.0
38 TraesCS1A01G358100 chr3B 90.909 55 2 2 1394 1445 117721568 117721622 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G358100 chr1A 540190238 540192900 2662 False 1037.68 4918 97.6000 1 2663 5 chr1A.!!$F2 2662
1 TraesCS1A01G358100 chr1A 540286767 540287823 1056 True 751.50 1334 92.5065 618 1661 2 chr1A.!!$R2 1043
2 TraesCS1A01G358100 chr1A 99862687 99863196 509 False 255.00 255 76.1810 2140 2661 1 chr1A.!!$F1 521
3 TraesCS1A01G358100 chr1D 444891805 444893699 1894 False 1125.70 2193 93.9270 767 2661 2 chr1D.!!$F2 1894
4 TraesCS1A01G358100 chr1D 445039877 445040966 1089 True 749.00 1339 91.4075 615 1661 2 chr1D.!!$R1 1046
5 TraesCS1A01G358100 chr1B 605432588 605435597 3009 False 766.00 1269 87.5265 767 1953 2 chr1B.!!$F2 1186
6 TraesCS1A01G358100 chr1B 605583750 605584943 1193 True 652.50 942 93.0920 618 1661 2 chr1B.!!$R2 1043
7 TraesCS1A01G358100 chr4A 740942717 740943222 505 False 545.00 545 86.8110 1 486 1 chr4A.!!$F1 485
8 TraesCS1A01G358100 chr7D 590059164 590059704 540 False 261.00 261 76.0710 2117 2661 1 chr7D.!!$F2 544
9 TraesCS1A01G358100 chr5D 383741619 383742159 540 False 364.00 364 79.1370 2112 2661 1 chr5D.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.030908 CGCCTAAGTCTCACCGGATC 59.969 60.0 9.46 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 3756 0.249741 AAACTCCTGTCCGGTTGTCG 60.25 55.0 0.0 0.0 38.88 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.742372 CTGGCTGGAACCGAACGG 60.742 66.667 11.83 11.83 42.03 4.44
96 97 3.775654 CGCCCCTCACTGGTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
97 98 3.403558 GCCCCTCACTGGTCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
98 99 2.452114 CCCCTCACTGGTCCTCCT 59.548 66.667 0.00 0.00 34.23 3.69
99 100 1.687493 CCCCTCACTGGTCCTCCTC 60.687 68.421 0.00 0.00 34.23 3.71
100 101 2.055042 CCCTCACTGGTCCTCCTCG 61.055 68.421 0.00 0.00 34.23 4.63
101 102 2.716017 CCTCACTGGTCCTCCTCGC 61.716 68.421 0.00 0.00 34.23 5.03
102 103 3.057547 CTCACTGGTCCTCCTCGCG 62.058 68.421 0.00 0.00 34.23 5.87
103 104 4.803426 CACTGGTCCTCCTCGCGC 62.803 72.222 0.00 0.00 34.23 6.86
111 112 4.933064 CTCCTCGCGCCACCGATC 62.933 72.222 0.00 0.00 36.54 3.69
144 145 1.730487 CGAGACGGATCTGGACAGG 59.270 63.158 6.47 0.00 34.34 4.00
145 146 0.748367 CGAGACGGATCTGGACAGGA 60.748 60.000 6.47 0.00 34.34 3.86
146 147 0.741915 GAGACGGATCTGGACAGGAC 59.258 60.000 6.47 0.00 34.34 3.85
147 148 1.032657 AGACGGATCTGGACAGGACG 61.033 60.000 6.47 4.87 32.29 4.79
148 149 2.105128 CGGATCTGGACAGGACGC 59.895 66.667 0.00 0.00 0.00 5.19
149 150 2.501610 GGATCTGGACAGGACGCC 59.498 66.667 0.00 0.00 0.00 5.68
150 151 2.359169 GGATCTGGACAGGACGCCA 61.359 63.158 0.00 0.00 0.00 5.69
154 155 3.298958 TGGACAGGACGCCAGATC 58.701 61.111 0.00 0.00 0.00 2.75
155 156 2.359169 TGGACAGGACGCCAGATCC 61.359 63.158 0.00 3.29 36.38 3.36
156 157 2.105128 GACAGGACGCCAGATCCG 59.895 66.667 0.00 0.00 41.52 4.18
157 158 4.148825 ACAGGACGCCAGATCCGC 62.149 66.667 0.00 0.00 41.52 5.54
158 159 4.147449 CAGGACGCCAGATCCGCA 62.147 66.667 3.53 0.00 41.52 5.69
159 160 3.842923 AGGACGCCAGATCCGCAG 61.843 66.667 3.53 0.00 41.52 5.18
163 164 4.923942 CGCCAGATCCGCAGCCAT 62.924 66.667 3.53 0.00 0.00 4.40
164 165 2.976903 GCCAGATCCGCAGCCATC 60.977 66.667 0.00 0.00 0.00 3.51
165 166 2.664185 CCAGATCCGCAGCCATCG 60.664 66.667 0.00 0.00 0.00 3.84
172 173 2.887568 CGCAGCCATCGGAGTCAC 60.888 66.667 0.00 0.00 0.00 3.67
173 174 2.512515 GCAGCCATCGGAGTCACC 60.513 66.667 0.00 0.00 0.00 4.02
174 175 2.187946 CAGCCATCGGAGTCACCC 59.812 66.667 0.00 0.00 34.64 4.61
175 176 2.284625 AGCCATCGGAGTCACCCA 60.285 61.111 0.00 0.00 34.64 4.51
176 177 1.690633 AGCCATCGGAGTCACCCAT 60.691 57.895 0.00 0.00 34.64 4.00
177 178 1.524621 GCCATCGGAGTCACCCATG 60.525 63.158 0.00 0.00 34.64 3.66
178 179 1.907739 CCATCGGAGTCACCCATGT 59.092 57.895 0.00 0.00 34.64 3.21
179 180 0.462581 CCATCGGAGTCACCCATGTG 60.463 60.000 0.00 0.00 44.18 3.21
180 181 1.091771 CATCGGAGTCACCCATGTGC 61.092 60.000 0.00 0.00 42.46 4.57
181 182 2.257409 ATCGGAGTCACCCATGTGCC 62.257 60.000 0.00 0.00 42.46 5.01
182 183 2.044946 GGAGTCACCCATGTGCCC 60.045 66.667 0.00 0.00 42.46 5.36
183 184 2.436646 GAGTCACCCATGTGCCCG 60.437 66.667 0.00 0.00 42.46 6.13
184 185 3.249189 AGTCACCCATGTGCCCGT 61.249 61.111 0.00 0.00 42.46 5.28
185 186 3.055719 GTCACCCATGTGCCCGTG 61.056 66.667 0.00 0.00 42.46 4.94
186 187 4.343323 TCACCCATGTGCCCGTGG 62.343 66.667 0.00 0.00 45.85 4.94
207 208 2.202743 CGACACCGCCGATCATGT 60.203 61.111 0.00 0.00 0.00 3.21
208 209 1.065109 CGACACCGCCGATCATGTA 59.935 57.895 0.00 0.00 0.00 2.29
209 210 0.526739 CGACACCGCCGATCATGTAA 60.527 55.000 0.00 0.00 0.00 2.41
210 211 1.209128 GACACCGCCGATCATGTAAG 58.791 55.000 0.00 0.00 0.00 2.34
211 212 0.535335 ACACCGCCGATCATGTAAGT 59.465 50.000 0.00 0.00 0.00 2.24
212 213 1.066430 ACACCGCCGATCATGTAAGTT 60.066 47.619 0.00 0.00 0.00 2.66
213 214 1.593006 CACCGCCGATCATGTAAGTTC 59.407 52.381 0.00 0.00 0.00 3.01
214 215 1.217882 CCGCCGATCATGTAAGTTCC 58.782 55.000 0.00 0.00 0.00 3.62
215 216 1.217882 CGCCGATCATGTAAGTTCCC 58.782 55.000 0.00 0.00 0.00 3.97
216 217 1.472552 CGCCGATCATGTAAGTTCCCA 60.473 52.381 0.00 0.00 0.00 4.37
217 218 2.806745 CGCCGATCATGTAAGTTCCCAT 60.807 50.000 0.00 0.00 0.00 4.00
218 219 2.808543 GCCGATCATGTAAGTTCCCATC 59.191 50.000 0.00 0.00 0.00 3.51
219 220 3.059884 CCGATCATGTAAGTTCCCATCG 58.940 50.000 0.00 0.00 33.16 3.84
220 221 3.492656 CCGATCATGTAAGTTCCCATCGT 60.493 47.826 6.82 0.00 31.79 3.73
221 222 3.736252 CGATCATGTAAGTTCCCATCGTC 59.264 47.826 0.00 0.00 0.00 4.20
222 223 4.693283 GATCATGTAAGTTCCCATCGTCA 58.307 43.478 0.00 0.00 0.00 4.35
223 224 3.857052 TCATGTAAGTTCCCATCGTCAC 58.143 45.455 0.00 0.00 0.00 3.67
224 225 2.754946 TGTAAGTTCCCATCGTCACC 57.245 50.000 0.00 0.00 0.00 4.02
225 226 1.067425 TGTAAGTTCCCATCGTCACCG 60.067 52.381 0.00 0.00 0.00 4.94
226 227 0.108520 TAAGTTCCCATCGTCACCGC 60.109 55.000 0.00 0.00 0.00 5.68
227 228 3.186047 GTTCCCATCGTCACCGCG 61.186 66.667 0.00 0.00 0.00 6.46
228 229 3.687102 TTCCCATCGTCACCGCGT 61.687 61.111 4.92 0.00 0.00 6.01
229 230 2.341875 TTCCCATCGTCACCGCGTA 61.342 57.895 4.92 0.00 0.00 4.42
230 231 2.274232 TTCCCATCGTCACCGCGTAG 62.274 60.000 4.92 0.00 0.00 3.51
276 277 4.459089 GGCCTCCCAGCGTGAGAC 62.459 72.222 0.00 0.00 31.26 3.36
277 278 4.803426 GCCTCCCAGCGTGAGACG 62.803 72.222 2.28 0.00 45.88 4.18
286 287 2.579787 CGTGAGACGCCGCCTAAG 60.580 66.667 0.00 0.00 33.65 2.18
287 288 2.572284 GTGAGACGCCGCCTAAGT 59.428 61.111 0.00 0.00 0.00 2.24
288 289 1.516603 GTGAGACGCCGCCTAAGTC 60.517 63.158 0.00 0.00 35.30 3.01
289 290 1.677966 TGAGACGCCGCCTAAGTCT 60.678 57.895 0.00 0.00 46.61 3.24
290 291 3.198582 AGACGCCGCCTAAGTCTC 58.801 61.111 0.00 0.00 40.85 3.36
291 292 1.677966 AGACGCCGCCTAAGTCTCA 60.678 57.895 0.00 0.00 40.85 3.27
292 293 1.516603 GACGCCGCCTAAGTCTCAC 60.517 63.158 0.00 0.00 32.58 3.51
293 294 2.202756 CGCCGCCTAAGTCTCACC 60.203 66.667 0.00 0.00 0.00 4.02
294 295 2.202756 GCCGCCTAAGTCTCACCG 60.203 66.667 0.00 0.00 0.00 4.94
295 296 2.494918 CCGCCTAAGTCTCACCGG 59.505 66.667 0.00 0.00 0.00 5.28
296 297 2.050350 CCGCCTAAGTCTCACCGGA 61.050 63.158 9.46 0.00 38.04 5.14
297 298 1.392710 CCGCCTAAGTCTCACCGGAT 61.393 60.000 9.46 0.00 38.04 4.18
298 299 0.030908 CGCCTAAGTCTCACCGGATC 59.969 60.000 9.46 0.00 0.00 3.36
299 300 1.404843 GCCTAAGTCTCACCGGATCT 58.595 55.000 9.46 0.00 0.00 2.75
300 301 1.067821 GCCTAAGTCTCACCGGATCTG 59.932 57.143 9.46 0.00 0.00 2.90
301 302 1.067821 CCTAAGTCTCACCGGATCTGC 59.932 57.143 9.46 0.00 0.00 4.26
302 303 1.067821 CTAAGTCTCACCGGATCTGCC 59.932 57.143 9.46 0.00 0.00 4.85
303 304 0.904865 AAGTCTCACCGGATCTGCCA 60.905 55.000 9.46 0.00 35.94 4.92
304 305 0.689080 AGTCTCACCGGATCTGCCAT 60.689 55.000 9.46 0.00 35.94 4.40
305 306 0.531532 GTCTCACCGGATCTGCCATG 60.532 60.000 9.46 0.00 35.94 3.66
306 307 1.227764 CTCACCGGATCTGCCATGG 60.228 63.158 9.46 7.63 35.94 3.66
307 308 2.903855 CACCGGATCTGCCATGGC 60.904 66.667 30.54 30.54 42.35 4.40
308 309 4.552365 ACCGGATCTGCCATGGCG 62.552 66.667 30.87 24.20 45.51 5.69
309 310 4.240103 CCGGATCTGCCATGGCGA 62.240 66.667 30.87 28.12 45.51 5.54
310 311 2.969238 CGGATCTGCCATGGCGAC 60.969 66.667 30.87 20.20 45.51 5.19
311 312 2.592861 GGATCTGCCATGGCGACC 60.593 66.667 30.87 24.50 45.51 4.79
312 313 2.190313 GATCTGCCATGGCGACCA 59.810 61.111 30.87 15.10 45.51 4.02
313 314 2.124570 ATCTGCCATGGCGACCAC 60.125 61.111 30.87 4.97 45.51 4.16
314 315 3.704231 ATCTGCCATGGCGACCACC 62.704 63.158 30.87 4.18 45.51 4.61
315 316 4.415150 CTGCCATGGCGACCACCT 62.415 66.667 30.87 0.00 45.51 4.00
316 317 4.720902 TGCCATGGCGACCACCTG 62.721 66.667 30.87 0.00 45.51 4.00
323 324 4.329545 GCGACCACCTGCCTTGGA 62.330 66.667 2.50 0.00 37.58 3.53
324 325 2.671070 CGACCACCTGCCTTGGAT 59.329 61.111 2.50 0.00 37.58 3.41
325 326 1.450312 CGACCACCTGCCTTGGATC 60.450 63.158 2.50 0.00 37.58 3.36
326 327 1.685224 GACCACCTGCCTTGGATCA 59.315 57.895 2.50 0.00 37.58 2.92
327 328 0.257039 GACCACCTGCCTTGGATCAT 59.743 55.000 2.50 0.00 37.58 2.45
328 329 0.033796 ACCACCTGCCTTGGATCATG 60.034 55.000 2.50 0.00 37.58 3.07
329 330 1.389609 CCACCTGCCTTGGATCATGC 61.390 60.000 0.00 0.00 36.02 4.06
330 331 0.681887 CACCTGCCTTGGATCATGCA 60.682 55.000 0.00 0.00 0.00 3.96
332 333 2.415825 CTGCCTTGGATCATGCAGG 58.584 57.895 13.90 0.00 45.69 4.85
333 334 1.076559 TGCCTTGGATCATGCAGGG 60.077 57.895 2.47 2.47 37.99 4.45
334 335 3.851955 CCTTGGATCATGCAGGGC 58.148 61.111 0.00 0.00 26.66 5.19
335 336 1.831286 CCTTGGATCATGCAGGGCC 60.831 63.158 0.00 0.00 26.66 5.80
336 337 1.831286 CTTGGATCATGCAGGGCCC 60.831 63.158 16.46 16.46 0.00 5.80
337 338 3.719646 TTGGATCATGCAGGGCCCG 62.720 63.158 18.44 13.02 0.00 6.13
380 381 4.666253 CAGTGGTGGCTGGGGGTG 62.666 72.222 0.00 0.00 33.11 4.61
381 382 4.918360 AGTGGTGGCTGGGGGTGA 62.918 66.667 0.00 0.00 0.00 4.02
382 383 3.897122 GTGGTGGCTGGGGGTGAA 61.897 66.667 0.00 0.00 0.00 3.18
383 384 3.106609 TGGTGGCTGGGGGTGAAA 61.107 61.111 0.00 0.00 0.00 2.69
384 385 2.283173 GGTGGCTGGGGGTGAAAG 60.283 66.667 0.00 0.00 0.00 2.62
385 386 2.840753 GGTGGCTGGGGGTGAAAGA 61.841 63.158 0.00 0.00 0.00 2.52
386 387 1.303643 GTGGCTGGGGGTGAAAGAG 60.304 63.158 0.00 0.00 0.00 2.85
387 388 2.361737 GGCTGGGGGTGAAAGAGC 60.362 66.667 0.00 0.00 0.00 4.09
388 389 2.747855 GCTGGGGGTGAAAGAGCG 60.748 66.667 0.00 0.00 0.00 5.03
389 390 2.045926 CTGGGGGTGAAAGAGCGG 60.046 66.667 0.00 0.00 0.00 5.52
390 391 3.628646 CTGGGGGTGAAAGAGCGGG 62.629 68.421 0.00 0.00 0.00 6.13
391 392 4.426313 GGGGGTGAAAGAGCGGGG 62.426 72.222 0.00 0.00 0.00 5.73
392 393 3.327404 GGGGTGAAAGAGCGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
393 394 2.269241 GGGTGAAAGAGCGGGGAG 59.731 66.667 0.00 0.00 0.00 4.30
394 395 2.269241 GGTGAAAGAGCGGGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
395 396 2.269241 GTGAAAGAGCGGGGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
396 397 3.009115 TGAAAGAGCGGGGAGGGG 61.009 66.667 0.00 0.00 0.00 4.79
397 398 3.009714 GAAAGAGCGGGGAGGGGT 61.010 66.667 0.00 0.00 0.00 4.95
398 399 2.531942 AAAGAGCGGGGAGGGGTT 60.532 61.111 0.00 0.00 0.00 4.11
399 400 2.821679 GAAAGAGCGGGGAGGGGTTG 62.822 65.000 0.00 0.00 0.00 3.77
412 413 4.815108 GGTTGGTGGCCCGGGATC 62.815 72.222 29.31 16.56 0.00 3.36
475 476 4.615815 GAGGCGGCGGCATGAGAT 62.616 66.667 34.87 13.75 42.47 2.75
476 477 4.923942 AGGCGGCGGCATGAGATG 62.924 66.667 34.87 0.00 42.47 2.90
477 478 4.916293 GGCGGCGGCATGAGATGA 62.916 66.667 29.41 0.00 42.47 2.92
478 479 3.344215 GCGGCGGCATGAGATGAG 61.344 66.667 9.78 0.00 39.62 2.90
479 480 2.418777 CGGCGGCATGAGATGAGA 59.581 61.111 10.53 0.00 0.00 3.27
480 481 1.005275 CGGCGGCATGAGATGAGAT 60.005 57.895 10.53 0.00 0.00 2.75
481 482 1.289800 CGGCGGCATGAGATGAGATG 61.290 60.000 10.53 0.00 0.00 2.90
482 483 1.575576 GGCGGCATGAGATGAGATGC 61.576 60.000 3.07 0.00 43.60 3.91
483 484 1.898459 GCGGCATGAGATGAGATGCG 61.898 60.000 0.00 0.00 44.98 4.73
484 485 0.319297 CGGCATGAGATGAGATGCGA 60.319 55.000 0.00 0.00 44.98 5.10
485 486 1.430479 GGCATGAGATGAGATGCGAG 58.570 55.000 0.00 0.00 44.98 5.03
486 487 1.430479 GCATGAGATGAGATGCGAGG 58.570 55.000 0.00 0.00 35.95 4.63
487 488 1.270199 GCATGAGATGAGATGCGAGGT 60.270 52.381 0.00 0.00 35.95 3.85
488 489 2.674954 CATGAGATGAGATGCGAGGTC 58.325 52.381 0.00 0.00 0.00 3.85
489 490 0.665298 TGAGATGAGATGCGAGGTCG 59.335 55.000 0.00 0.00 43.27 4.79
490 491 0.665835 GAGATGAGATGCGAGGTCGT 59.334 55.000 0.69 0.00 42.22 4.34
491 492 0.383590 AGATGAGATGCGAGGTCGTG 59.616 55.000 0.69 0.00 42.22 4.35
492 493 0.596083 GATGAGATGCGAGGTCGTGG 60.596 60.000 0.69 0.00 42.22 4.94
493 494 1.037579 ATGAGATGCGAGGTCGTGGA 61.038 55.000 0.69 0.00 42.22 4.02
494 495 1.226717 GAGATGCGAGGTCGTGGAC 60.227 63.158 0.69 0.00 42.22 4.02
509 510 6.980051 GTCGTGGACCTATTTAGAATTTGT 57.020 37.500 0.00 0.00 0.00 2.83
510 511 7.373778 GTCGTGGACCTATTTAGAATTTGTT 57.626 36.000 0.00 0.00 0.00 2.83
511 512 7.241376 GTCGTGGACCTATTTAGAATTTGTTG 58.759 38.462 0.00 0.00 0.00 3.33
512 513 6.373216 TCGTGGACCTATTTAGAATTTGTTGG 59.627 38.462 0.00 0.00 0.00 3.77
513 514 6.330278 GTGGACCTATTTAGAATTTGTTGGC 58.670 40.000 0.00 0.00 0.00 4.52
514 515 6.013379 TGGACCTATTTAGAATTTGTTGGCA 58.987 36.000 0.00 0.00 0.00 4.92
515 516 6.667414 TGGACCTATTTAGAATTTGTTGGCAT 59.333 34.615 0.00 0.00 0.00 4.40
516 517 7.180051 TGGACCTATTTAGAATTTGTTGGCATT 59.820 33.333 0.00 0.00 0.00 3.56
517 518 7.706607 GGACCTATTTAGAATTTGTTGGCATTC 59.293 37.037 0.00 0.00 0.00 2.67
518 519 7.555965 ACCTATTTAGAATTTGTTGGCATTCC 58.444 34.615 0.00 0.00 30.75 3.01
519 520 6.697019 CCTATTTAGAATTTGTTGGCATTCCG 59.303 38.462 0.00 0.00 34.14 4.30
520 521 5.461032 TTTAGAATTTGTTGGCATTCCGT 57.539 34.783 0.00 0.00 34.14 4.69
521 522 6.576662 TTTAGAATTTGTTGGCATTCCGTA 57.423 33.333 0.00 0.00 34.14 4.02
522 523 6.767524 TTAGAATTTGTTGGCATTCCGTAT 57.232 33.333 0.00 0.00 34.14 3.06
523 524 7.867305 TTAGAATTTGTTGGCATTCCGTATA 57.133 32.000 0.00 0.00 34.14 1.47
524 525 6.131544 AGAATTTGTTGGCATTCCGTATAC 57.868 37.500 0.00 0.00 34.14 1.47
525 526 4.545823 ATTTGTTGGCATTCCGTATACG 57.454 40.909 18.40 18.40 39.44 3.06
526 527 2.963548 TGTTGGCATTCCGTATACGA 57.036 45.000 26.37 8.03 43.02 3.43
527 528 3.248495 TGTTGGCATTCCGTATACGAA 57.752 42.857 26.37 17.49 43.02 3.85
528 529 3.597255 TGTTGGCATTCCGTATACGAAA 58.403 40.909 26.37 13.76 43.02 3.46
529 530 4.001652 TGTTGGCATTCCGTATACGAAAA 58.998 39.130 26.37 18.83 43.02 2.29
530 531 4.142859 TGTTGGCATTCCGTATACGAAAAC 60.143 41.667 26.37 16.80 43.02 2.43
531 532 3.864243 TGGCATTCCGTATACGAAAACT 58.136 40.909 26.37 0.00 43.02 2.66
532 533 4.255301 TGGCATTCCGTATACGAAAACTT 58.745 39.130 26.37 4.11 43.02 2.66
533 534 4.330620 TGGCATTCCGTATACGAAAACTTC 59.669 41.667 26.37 10.32 43.02 3.01
534 535 4.330620 GGCATTCCGTATACGAAAACTTCA 59.669 41.667 26.37 1.57 43.02 3.02
535 536 5.163834 GGCATTCCGTATACGAAAACTTCAA 60.164 40.000 26.37 6.18 43.02 2.69
536 537 6.457799 GGCATTCCGTATACGAAAACTTCAAT 60.458 38.462 26.37 7.97 43.02 2.57
537 538 6.964934 GCATTCCGTATACGAAAACTTCAATT 59.035 34.615 26.37 1.49 43.02 2.32
538 539 8.117988 GCATTCCGTATACGAAAACTTCAATTA 58.882 33.333 26.37 0.00 43.02 1.40
539 540 9.976255 CATTCCGTATACGAAAACTTCAATTAA 57.024 29.630 26.37 2.63 43.02 1.40
549 550 9.908152 ACGAAAACTTCAATTAATTTAGAAGGG 57.092 29.630 22.51 13.30 41.25 3.95
550 551 9.353999 CGAAAACTTCAATTAATTTAGAAGGGG 57.646 33.333 22.51 8.05 41.25 4.79
554 555 8.539117 ACTTCAATTAATTTAGAAGGGGATGG 57.461 34.615 22.51 6.57 41.25 3.51
555 556 8.343787 ACTTCAATTAATTTAGAAGGGGATGGA 58.656 33.333 22.51 3.63 41.25 3.41
556 557 8.766994 TTCAATTAATTTAGAAGGGGATGGAG 57.233 34.615 0.00 0.00 0.00 3.86
557 558 7.882755 TCAATTAATTTAGAAGGGGATGGAGT 58.117 34.615 0.00 0.00 0.00 3.85
558 559 9.009675 TCAATTAATTTAGAAGGGGATGGAGTA 57.990 33.333 0.00 0.00 0.00 2.59
559 560 9.813826 CAATTAATTTAGAAGGGGATGGAGTAT 57.186 33.333 0.00 0.00 0.00 2.12
562 563 7.947782 AATTTAGAAGGGGATGGAGTATACA 57.052 36.000 5.50 0.00 0.00 2.29
563 564 8.525729 AATTTAGAAGGGGATGGAGTATACAT 57.474 34.615 5.50 0.00 0.00 2.29
564 565 6.935240 TTAGAAGGGGATGGAGTATACATG 57.065 41.667 5.50 0.00 0.00 3.21
565 566 4.832492 AGAAGGGGATGGAGTATACATGT 58.168 43.478 2.69 2.69 0.00 3.21
566 567 5.977533 AGAAGGGGATGGAGTATACATGTA 58.022 41.667 8.27 8.27 0.00 2.29
567 568 6.019748 AGAAGGGGATGGAGTATACATGTAG 58.980 44.000 11.91 0.00 0.00 2.74
568 569 5.616975 AGGGGATGGAGTATACATGTAGA 57.383 43.478 11.91 3.55 0.00 2.59
569 570 6.172350 AGGGGATGGAGTATACATGTAGAT 57.828 41.667 11.91 0.00 0.00 1.98
570 571 7.298678 AGGGGATGGAGTATACATGTAGATA 57.701 40.000 11.91 0.00 0.00 1.98
571 572 7.898888 AGGGGATGGAGTATACATGTAGATAT 58.101 38.462 11.91 0.00 0.00 1.63
572 573 8.355256 AGGGGATGGAGTATACATGTAGATATT 58.645 37.037 11.91 0.00 0.00 1.28
573 574 8.424918 GGGGATGGAGTATACATGTAGATATTG 58.575 40.741 11.91 0.00 0.00 1.90
574 575 7.928706 GGGATGGAGTATACATGTAGATATTGC 59.071 40.741 11.91 4.03 0.00 3.56
575 576 7.649705 GGATGGAGTATACATGTAGATATTGCG 59.350 40.741 11.91 0.00 0.00 4.85
576 577 6.330278 TGGAGTATACATGTAGATATTGCGC 58.670 40.000 11.91 0.00 0.00 6.09
577 578 5.455849 GGAGTATACATGTAGATATTGCGCG 59.544 44.000 11.91 0.00 0.00 6.86
578 579 5.950883 AGTATACATGTAGATATTGCGCGT 58.049 37.500 11.91 0.00 0.00 6.01
579 580 6.387465 AGTATACATGTAGATATTGCGCGTT 58.613 36.000 11.91 0.00 0.00 4.84
580 581 5.763444 ATACATGTAGATATTGCGCGTTC 57.237 39.130 11.91 0.00 0.00 3.95
581 582 2.471370 ACATGTAGATATTGCGCGTTCG 59.529 45.455 8.43 0.00 39.07 3.95
582 583 2.197792 TGTAGATATTGCGCGTTCGT 57.802 45.000 8.43 0.00 38.14 3.85
583 584 1.849829 TGTAGATATTGCGCGTTCGTG 59.150 47.619 8.43 1.25 38.14 4.35
584 585 1.189446 GTAGATATTGCGCGTTCGTGG 59.811 52.381 8.43 0.00 38.14 4.94
585 586 0.179121 AGATATTGCGCGTTCGTGGA 60.179 50.000 8.43 1.82 38.14 4.02
586 587 0.043310 GATATTGCGCGTTCGTGGAC 60.043 55.000 8.43 0.00 38.14 4.02
587 588 1.426041 ATATTGCGCGTTCGTGGACC 61.426 55.000 8.43 0.00 38.14 4.46
588 589 2.495366 TATTGCGCGTTCGTGGACCT 62.495 55.000 8.43 0.00 38.14 3.85
589 590 2.495366 ATTGCGCGTTCGTGGACCTA 62.495 55.000 8.43 0.00 38.14 3.08
590 591 2.202703 GCGCGTTCGTGGACCTAT 60.203 61.111 8.43 0.00 38.14 2.57
591 592 1.808390 GCGCGTTCGTGGACCTATT 60.808 57.895 8.43 0.00 38.14 1.73
592 593 1.356527 GCGCGTTCGTGGACCTATTT 61.357 55.000 8.43 0.00 38.14 1.40
593 594 1.912001 CGCGTTCGTGGACCTATTTA 58.088 50.000 0.00 0.00 0.00 1.40
594 595 1.850441 CGCGTTCGTGGACCTATTTAG 59.150 52.381 0.00 0.00 0.00 1.85
595 596 2.478370 CGCGTTCGTGGACCTATTTAGA 60.478 50.000 0.00 0.00 0.00 2.10
596 597 3.514645 GCGTTCGTGGACCTATTTAGAA 58.485 45.455 0.00 0.00 0.00 2.10
597 598 4.117685 GCGTTCGTGGACCTATTTAGAAT 58.882 43.478 0.00 0.00 0.00 2.40
598 599 4.569564 GCGTTCGTGGACCTATTTAGAATT 59.430 41.667 0.00 0.00 0.00 2.17
599 600 5.064325 GCGTTCGTGGACCTATTTAGAATTT 59.936 40.000 0.00 0.00 0.00 1.82
600 601 6.475207 CGTTCGTGGACCTATTTAGAATTTG 58.525 40.000 0.00 0.00 0.00 2.32
601 602 6.091713 CGTTCGTGGACCTATTTAGAATTTGT 59.908 38.462 0.00 0.00 0.00 2.83
602 603 7.360607 CGTTCGTGGACCTATTTAGAATTTGTT 60.361 37.037 0.00 0.00 0.00 2.83
603 604 7.372451 TCGTGGACCTATTTAGAATTTGTTG 57.628 36.000 0.00 0.00 0.00 3.33
604 605 6.373216 TCGTGGACCTATTTAGAATTTGTTGG 59.627 38.462 0.00 0.00 0.00 3.77
605 606 6.330278 GTGGACCTATTTAGAATTTGTTGGC 58.670 40.000 0.00 0.00 0.00 4.52
606 607 6.013379 TGGACCTATTTAGAATTTGTTGGCA 58.987 36.000 0.00 0.00 0.00 4.92
607 608 6.667414 TGGACCTATTTAGAATTTGTTGGCAT 59.333 34.615 0.00 0.00 0.00 4.40
608 609 7.180051 TGGACCTATTTAGAATTTGTTGGCATT 59.820 33.333 0.00 0.00 0.00 3.56
609 610 7.706607 GGACCTATTTAGAATTTGTTGGCATTC 59.293 37.037 0.00 0.00 0.00 2.67
610 611 7.555965 ACCTATTTAGAATTTGTTGGCATTCC 58.444 34.615 0.00 0.00 30.75 3.01
611 612 6.697019 CCTATTTAGAATTTGTTGGCATTCCG 59.303 38.462 0.00 0.00 34.14 4.30
612 613 5.461032 TTTAGAATTTGTTGGCATTCCGT 57.539 34.783 0.00 0.00 34.14 4.69
613 614 6.576662 TTTAGAATTTGTTGGCATTCCGTA 57.423 33.333 0.00 0.00 34.14 4.02
614 615 6.767524 TTAGAATTTGTTGGCATTCCGTAT 57.232 33.333 0.00 0.00 34.14 3.06
615 616 5.659440 AGAATTTGTTGGCATTCCGTATT 57.341 34.783 0.00 0.00 34.14 1.89
616 617 5.650543 AGAATTTGTTGGCATTCCGTATTC 58.349 37.500 0.00 0.00 34.14 1.75
617 618 3.479505 TTTGTTGGCATTCCGTATTCG 57.520 42.857 0.00 0.00 34.14 3.34
618 619 2.388310 TGTTGGCATTCCGTATTCGA 57.612 45.000 0.00 0.00 39.71 3.71
619 620 2.701107 TGTTGGCATTCCGTATTCGAA 58.299 42.857 0.00 0.00 39.71 3.71
620 621 3.075148 TGTTGGCATTCCGTATTCGAAA 58.925 40.909 0.00 0.00 39.71 3.46
621 622 3.502595 TGTTGGCATTCCGTATTCGAAAA 59.497 39.130 0.00 0.00 39.71 2.29
624 625 3.127895 TGGCATTCCGTATTCGAAAAAGG 59.872 43.478 0.00 5.87 39.71 3.11
633 634 4.615541 CGTATTCGAAAAAGGTTTTGAGCC 59.384 41.667 0.00 0.00 38.20 4.70
643 644 0.927537 GTTTTGAGCCCAACGCAAAC 59.072 50.000 0.00 0.00 46.01 2.93
647 648 1.357334 GAGCCCAACGCAAACGAAA 59.643 52.632 0.00 0.00 43.93 3.46
659 660 2.393764 CAAACGAAAGAATGCGGCTTT 58.606 42.857 0.00 0.10 38.22 3.51
672 673 1.922545 GCGGCTTTGATTGCTTGAATC 59.077 47.619 0.00 0.00 40.99 2.52
701 702 0.950555 CGGATGGACCACACACACTG 60.951 60.000 0.00 0.00 38.90 3.66
708 709 0.177141 ACCACACACACTGCTACGTT 59.823 50.000 0.00 0.00 0.00 3.99
994 1049 4.243008 TCTCGCCGGTGCCAAACA 62.243 61.111 11.05 0.00 0.00 2.83
1247 1351 3.744719 CGAGGGCGTGTTCTCGGA 61.745 66.667 5.00 0.00 46.20 4.55
1458 1583 1.152830 GAACAGCCCCAACCCAAGA 59.847 57.895 0.00 0.00 0.00 3.02
1696 3736 0.393808 ACCCCGCATCAATGGTGTAC 60.394 55.000 0.00 0.00 0.00 2.90
1715 3755 3.452786 CCGCTCCAAGCTCGAGGA 61.453 66.667 15.58 2.40 39.60 3.71
1716 3756 2.202676 CGCTCCAAGCTCGAGGAC 60.203 66.667 15.58 0.00 39.60 3.85
1818 3875 0.251341 ACTGAAAAAGCCGGAGCCAT 60.251 50.000 5.05 0.00 41.25 4.40
1871 3928 1.734465 GTTGTGGAAGAAGATGCTCCG 59.266 52.381 0.00 0.00 0.00 4.63
1872 3929 0.976641 TGTGGAAGAAGATGCTCCGT 59.023 50.000 0.00 0.00 0.00 4.69
1873 3930 1.338105 TGTGGAAGAAGATGCTCCGTG 60.338 52.381 0.00 0.00 0.00 4.94
1874 3931 0.976641 TGGAAGAAGATGCTCCGTGT 59.023 50.000 0.00 0.00 0.00 4.49
1875 3932 2.094182 GTGGAAGAAGATGCTCCGTGTA 60.094 50.000 0.00 0.00 0.00 2.90
1876 3933 2.766263 TGGAAGAAGATGCTCCGTGTAT 59.234 45.455 0.00 0.00 0.00 2.29
1878 3935 3.557595 GGAAGAAGATGCTCCGTGTATTG 59.442 47.826 0.00 0.00 0.00 1.90
1880 3937 4.052159 AGAAGATGCTCCGTGTATTGAG 57.948 45.455 0.00 0.00 0.00 3.02
1881 3938 2.898729 AGATGCTCCGTGTATTGAGG 57.101 50.000 0.00 0.00 0.00 3.86
1882 3939 2.388735 AGATGCTCCGTGTATTGAGGA 58.611 47.619 0.00 0.00 33.31 3.71
1883 3940 2.968574 AGATGCTCCGTGTATTGAGGAT 59.031 45.455 0.00 0.00 41.61 3.24
1884 3941 4.152647 AGATGCTCCGTGTATTGAGGATA 58.847 43.478 0.00 0.00 39.41 2.59
1885 3942 4.219507 AGATGCTCCGTGTATTGAGGATAG 59.780 45.833 0.00 0.00 39.41 2.08
1887 3944 3.958147 TGCTCCGTGTATTGAGGATAGAA 59.042 43.478 0.00 0.00 33.04 2.10
1888 3945 4.404394 TGCTCCGTGTATTGAGGATAGAAA 59.596 41.667 0.00 0.00 33.04 2.52
1889 3946 5.105106 TGCTCCGTGTATTGAGGATAGAAAA 60.105 40.000 0.00 0.00 33.04 2.29
1890 3947 5.992217 GCTCCGTGTATTGAGGATAGAAAAT 59.008 40.000 0.00 0.00 33.04 1.82
1891 3948 6.073548 GCTCCGTGTATTGAGGATAGAAAATG 60.074 42.308 0.00 0.00 33.04 2.32
1893 3950 7.735917 TCCGTGTATTGAGGATAGAAAATGAT 58.264 34.615 0.00 0.00 0.00 2.45
1894 3951 7.872993 TCCGTGTATTGAGGATAGAAAATGATC 59.127 37.037 0.00 0.00 0.00 2.92
1895 3952 7.875041 CCGTGTATTGAGGATAGAAAATGATCT 59.125 37.037 0.00 0.00 0.00 2.75
1899 3956 9.784531 GTATTGAGGATAGAAAATGATCTTCCA 57.215 33.333 0.00 0.00 33.09 3.53
1902 3959 8.037723 TGAGGATAGAAAATGATCTTCCATGA 57.962 34.615 0.00 0.00 33.09 3.07
1913 3979 4.222810 TGATCTTCCATGAGGACTTCGAAA 59.777 41.667 0.00 0.00 45.73 3.46
2000 4067 7.467557 AACAATGTAAAAACAATGTCAGCTG 57.532 32.000 7.63 7.63 33.12 4.24
2021 4088 1.494721 GATGGCCTATGAAGGGGAACA 59.505 52.381 3.32 0.00 43.87 3.18
2022 4089 1.607225 TGGCCTATGAAGGGGAACAT 58.393 50.000 3.32 0.00 43.87 2.71
2024 4091 1.494721 GGCCTATGAAGGGGAACATGA 59.505 52.381 0.00 0.00 43.87 3.07
2025 4092 2.108952 GGCCTATGAAGGGGAACATGAT 59.891 50.000 0.00 0.00 43.87 2.45
2026 4093 3.437052 GGCCTATGAAGGGGAACATGATT 60.437 47.826 0.00 0.00 43.87 2.57
2027 4094 3.823304 GCCTATGAAGGGGAACATGATTC 59.177 47.826 0.00 0.00 43.87 2.52
2028 4095 4.689705 GCCTATGAAGGGGAACATGATTCA 60.690 45.833 0.00 0.54 43.87 2.57
2029 4096 5.638133 CCTATGAAGGGGAACATGATTCAT 58.362 41.667 0.00 7.76 41.91 2.57
2058 4125 5.362143 TGGCAAATGATATTTGATCGGGAAA 59.638 36.000 16.13 0.00 0.00 3.13
2091 4158 5.106908 ACTGTACTAAGTAAACGTCCGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
2105 4172 3.574826 GTCCGTCTCTAAGGAAGCCATAT 59.425 47.826 0.00 0.00 38.41 1.78
2109 4176 4.314121 GTCTCTAAGGAAGCCATATGCAG 58.686 47.826 0.00 0.00 44.83 4.41
2115 4183 4.942363 AGGAAGCCATATGCAGGATAAT 57.058 40.909 0.00 0.00 44.83 1.28
2130 4198 5.394663 GCAGGATAATAGCATCTACATCCGT 60.395 44.000 9.10 0.00 37.58 4.69
2178 4246 2.795973 CGGACACGATCAGGCGTA 59.204 61.111 0.00 0.00 43.59 4.42
2179 4247 1.138036 CGGACACGATCAGGCGTAA 59.862 57.895 0.00 0.00 43.59 3.18
2183 4251 1.153901 CACGATCAGGCGTAACCGT 60.154 57.895 0.00 0.00 46.52 4.83
2189 4257 1.184431 TCAGGCGTAACCGTGGATAA 58.816 50.000 0.00 0.00 46.52 1.75
2210 4278 0.725117 GACCGGTTACGCCTCAAATG 59.275 55.000 9.42 0.00 39.22 2.32
2257 4325 6.782986 TCATATTTCAACCCCTAGATCCATG 58.217 40.000 0.00 0.00 0.00 3.66
2261 4329 2.785269 TCAACCCCTAGATCCATGCAAT 59.215 45.455 0.00 0.00 0.00 3.56
2263 4331 4.603171 TCAACCCCTAGATCCATGCAATAT 59.397 41.667 0.00 0.00 0.00 1.28
2264 4332 4.581309 ACCCCTAGATCCATGCAATATG 57.419 45.455 0.00 0.00 0.00 1.78
2267 4339 5.045578 ACCCCTAGATCCATGCAATATGTAC 60.046 44.000 0.00 0.00 0.00 2.90
2270 4342 7.268586 CCCTAGATCCATGCAATATGTACTAC 58.731 42.308 0.00 0.00 0.00 2.73
2278 4352 9.084533 TCCATGCAATATGTACTACATACTACA 57.915 33.333 10.52 9.25 43.13 2.74
2303 4378 1.747709 TCCTAGCTAGCTTCGTCGTT 58.252 50.000 24.88 0.00 0.00 3.85
2404 4481 2.037772 GACCTCATCCATGTAGGCGAAT 59.962 50.000 0.00 0.00 37.29 3.34
2411 4488 3.779444 TCCATGTAGGCGAATATCTCCT 58.221 45.455 0.00 0.00 35.46 3.69
2432 4509 4.680237 CCTCCACGGCGTGCTGAA 62.680 66.667 33.15 16.78 31.34 3.02
2450 4527 2.765807 CCTCCATCTCCTGCCGGT 60.766 66.667 1.90 0.00 0.00 5.28
2480 4597 1.186200 CGTCTCTGGATCCAACTCCA 58.814 55.000 17.00 0.00 43.09 3.86
2485 4602 1.372087 CTGGATCCAACTCCAAGCGC 61.372 60.000 17.00 0.00 44.59 5.92
2508 4625 1.070758 GGAATCGAGGATGGCTTGCTA 59.929 52.381 0.00 0.00 0.00 3.49
2509 4626 2.485479 GGAATCGAGGATGGCTTGCTAA 60.485 50.000 0.00 0.00 0.00 3.09
2513 4630 1.202687 CGAGGATGGCTTGCTAATCCA 60.203 52.381 21.04 1.00 42.04 3.41
2528 4645 4.457496 CCACCTGCAGATCCGCGT 62.457 66.667 17.39 0.00 33.35 6.01
2529 4646 2.887568 CACCTGCAGATCCGCGTC 60.888 66.667 17.39 0.00 33.35 5.19
2530 4647 4.148825 ACCTGCAGATCCGCGTCC 62.149 66.667 17.39 0.00 33.35 4.79
2531 4648 4.899239 CCTGCAGATCCGCGTCCC 62.899 72.222 17.39 0.00 33.35 4.46
2532 4649 4.899239 CTGCAGATCCGCGTCCCC 62.899 72.222 8.42 0.00 33.35 4.81
2534 4651 4.899239 GCAGATCCGCGTCCCCAG 62.899 72.222 4.92 0.00 0.00 4.45
2535 4652 4.899239 CAGATCCGCGTCCCCAGC 62.899 72.222 4.92 0.00 0.00 4.85
2554 4680 1.456705 GTCCCTCGCATCCTCCTCT 60.457 63.158 0.00 0.00 0.00 3.69
2585 4747 0.689412 CTCCTCCTCCAACTCCTCCC 60.689 65.000 0.00 0.00 0.00 4.30
2595 4757 0.326618 AACTCCTCCCACGGATCCAT 60.327 55.000 13.41 0.00 31.43 3.41
2597 4759 1.062428 ACTCCTCCCACGGATCCATTA 60.062 52.381 13.41 0.00 31.43 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.295423 GTTCGGTTCCAGCCAGCTA 59.705 57.895 0.00 0.00 0.00 3.32
79 80 3.775654 GAGGACCAGTGAGGGGCG 61.776 72.222 0.00 0.00 43.89 6.13
80 81 3.403558 GGAGGACCAGTGAGGGGC 61.404 72.222 0.00 0.00 43.89 5.80
81 82 1.687493 GAGGAGGACCAGTGAGGGG 60.687 68.421 0.00 0.00 43.89 4.79
82 83 2.055042 CGAGGAGGACCAGTGAGGG 61.055 68.421 0.00 0.00 43.89 4.30
83 84 2.716017 GCGAGGAGGACCAGTGAGG 61.716 68.421 0.00 0.00 45.67 3.86
84 85 2.888863 GCGAGGAGGACCAGTGAG 59.111 66.667 0.00 0.00 38.94 3.51
85 86 3.062466 CGCGAGGAGGACCAGTGA 61.062 66.667 0.00 0.00 38.94 3.41
86 87 4.803426 GCGCGAGGAGGACCAGTG 62.803 72.222 12.10 0.00 38.94 3.66
94 95 4.933064 GATCGGTGGCGCGAGGAG 62.933 72.222 12.10 0.00 0.00 3.69
126 127 0.748367 TCCTGTCCAGATCCGTCTCG 60.748 60.000 0.00 0.00 30.42 4.04
127 128 0.741915 GTCCTGTCCAGATCCGTCTC 59.258 60.000 0.00 0.00 30.42 3.36
128 129 1.032657 CGTCCTGTCCAGATCCGTCT 61.033 60.000 0.00 0.00 34.14 4.18
129 130 1.433879 CGTCCTGTCCAGATCCGTC 59.566 63.158 0.00 0.00 0.00 4.79
130 131 2.711922 GCGTCCTGTCCAGATCCGT 61.712 63.158 0.00 0.00 0.00 4.69
131 132 2.105128 GCGTCCTGTCCAGATCCG 59.895 66.667 0.00 0.00 0.00 4.18
132 133 2.359169 TGGCGTCCTGTCCAGATCC 61.359 63.158 0.00 0.00 0.00 3.36
133 134 3.298958 TGGCGTCCTGTCCAGATC 58.701 61.111 0.00 0.00 0.00 2.75
137 138 2.359169 GGATCTGGCGTCCTGTCCA 61.359 63.158 0.00 0.00 32.85 4.02
138 139 2.501610 GGATCTGGCGTCCTGTCC 59.498 66.667 0.00 0.00 32.85 4.02
139 140 2.105128 CGGATCTGGCGTCCTGTC 59.895 66.667 0.00 0.00 33.46 3.51
140 141 4.148825 GCGGATCTGGCGTCCTGT 62.149 66.667 3.14 0.00 33.46 4.00
141 142 4.147449 TGCGGATCTGGCGTCCTG 62.147 66.667 3.14 0.00 33.46 3.86
142 143 3.842923 CTGCGGATCTGGCGTCCT 61.843 66.667 3.14 0.00 33.46 3.85
146 147 4.923942 ATGGCTGCGGATCTGGCG 62.924 66.667 3.14 0.00 41.17 5.69
147 148 2.976903 GATGGCTGCGGATCTGGC 60.977 66.667 3.14 2.97 39.21 4.85
148 149 2.664185 CGATGGCTGCGGATCTGG 60.664 66.667 3.14 0.00 0.00 3.86
155 156 2.887568 GTGACTCCGATGGCTGCG 60.888 66.667 0.00 0.00 0.00 5.18
156 157 2.512515 GGTGACTCCGATGGCTGC 60.513 66.667 0.00 0.00 0.00 5.25
157 158 1.976132 ATGGGTGACTCCGATGGCTG 61.976 60.000 0.00 0.00 33.38 4.85
158 159 1.690633 ATGGGTGACTCCGATGGCT 60.691 57.895 0.00 0.00 33.38 4.75
159 160 1.524621 CATGGGTGACTCCGATGGC 60.525 63.158 9.91 0.00 44.95 4.40
160 161 4.863707 CATGGGTGACTCCGATGG 57.136 61.111 9.91 0.00 44.95 3.51
190 191 0.526739 TTACATGATCGGCGGTGTCG 60.527 55.000 7.21 0.00 39.81 4.35
191 192 1.209128 CTTACATGATCGGCGGTGTC 58.791 55.000 7.21 3.89 0.00 3.67
192 193 0.535335 ACTTACATGATCGGCGGTGT 59.465 50.000 7.21 9.97 0.00 4.16
193 194 1.593006 GAACTTACATGATCGGCGGTG 59.407 52.381 7.21 3.98 0.00 4.94
194 195 1.472728 GGAACTTACATGATCGGCGGT 60.473 52.381 7.21 0.00 0.00 5.68
195 196 1.217882 GGAACTTACATGATCGGCGG 58.782 55.000 7.21 0.00 0.00 6.13
196 197 1.217882 GGGAACTTACATGATCGGCG 58.782 55.000 0.00 0.00 0.00 6.46
197 198 2.325583 TGGGAACTTACATGATCGGC 57.674 50.000 0.00 0.00 0.00 5.54
198 199 3.059884 CGATGGGAACTTACATGATCGG 58.940 50.000 0.00 0.00 0.00 4.18
199 200 3.717707 ACGATGGGAACTTACATGATCG 58.282 45.455 0.00 2.75 37.75 3.69
200 201 4.508124 GTGACGATGGGAACTTACATGATC 59.492 45.833 0.00 0.00 0.00 2.92
201 202 4.442706 GTGACGATGGGAACTTACATGAT 58.557 43.478 0.00 0.00 0.00 2.45
202 203 3.369052 GGTGACGATGGGAACTTACATGA 60.369 47.826 0.00 0.00 0.00 3.07
203 204 2.936498 GGTGACGATGGGAACTTACATG 59.064 50.000 0.00 0.00 0.00 3.21
204 205 3.261981 GGTGACGATGGGAACTTACAT 57.738 47.619 0.00 0.00 0.00 2.29
205 206 2.754946 GGTGACGATGGGAACTTACA 57.245 50.000 0.00 0.00 0.00 2.41
219 220 3.755628 TCCCTGCTACGCGGTGAC 61.756 66.667 12.47 0.00 32.22 3.67
220 221 3.755628 GTCCCTGCTACGCGGTGA 61.756 66.667 12.47 0.00 32.22 4.02
257 258 4.463879 CTCACGCTGGGAGGCCAG 62.464 72.222 5.01 0.00 40.47 4.85
259 260 4.459089 GTCTCACGCTGGGAGGCC 62.459 72.222 0.00 0.00 30.83 5.19
260 261 4.803426 CGTCTCACGCTGGGAGGC 62.803 72.222 7.76 5.36 33.65 4.70
269 270 2.579787 CTTAGGCGGCGTCTCACG 60.580 66.667 21.03 3.37 45.88 4.35
270 271 1.516603 GACTTAGGCGGCGTCTCAC 60.517 63.158 21.03 4.20 0.00 3.51
271 272 1.677966 AGACTTAGGCGGCGTCTCA 60.678 57.895 21.03 6.14 32.93 3.27
272 273 1.064458 GAGACTTAGGCGGCGTCTC 59.936 63.158 21.03 22.84 44.53 3.36
273 274 1.677966 TGAGACTTAGGCGGCGTCT 60.678 57.895 21.20 21.20 40.46 4.18
274 275 1.516603 GTGAGACTTAGGCGGCGTC 60.517 63.158 1.71 1.71 0.00 5.19
275 276 2.572284 GTGAGACTTAGGCGGCGT 59.428 61.111 9.37 0.00 0.00 5.68
276 277 2.202756 GGTGAGACTTAGGCGGCG 60.203 66.667 0.51 0.51 0.00 6.46
277 278 2.202756 CGGTGAGACTTAGGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
278 279 1.392710 ATCCGGTGAGACTTAGGCGG 61.393 60.000 0.00 0.00 0.00 6.13
279 280 0.030908 GATCCGGTGAGACTTAGGCG 59.969 60.000 0.00 0.00 0.00 5.52
280 281 1.067821 CAGATCCGGTGAGACTTAGGC 59.932 57.143 0.00 0.00 0.00 3.93
281 282 1.067821 GCAGATCCGGTGAGACTTAGG 59.932 57.143 0.00 0.00 0.00 2.69
282 283 1.067821 GGCAGATCCGGTGAGACTTAG 59.932 57.143 0.00 0.00 0.00 2.18
283 284 1.112113 GGCAGATCCGGTGAGACTTA 58.888 55.000 0.00 0.00 0.00 2.24
284 285 0.904865 TGGCAGATCCGGTGAGACTT 60.905 55.000 0.00 0.00 37.80 3.01
285 286 0.689080 ATGGCAGATCCGGTGAGACT 60.689 55.000 0.00 0.00 37.80 3.24
286 287 0.531532 CATGGCAGATCCGGTGAGAC 60.532 60.000 0.00 0.00 37.80 3.36
287 288 1.689243 CCATGGCAGATCCGGTGAGA 61.689 60.000 0.00 0.00 37.80 3.27
288 289 1.227764 CCATGGCAGATCCGGTGAG 60.228 63.158 0.00 0.00 37.80 3.51
289 290 2.910360 CCATGGCAGATCCGGTGA 59.090 61.111 0.00 0.00 37.80 4.02
290 291 2.903855 GCCATGGCAGATCCGGTG 60.904 66.667 32.08 0.00 41.49 4.94
291 292 4.552365 CGCCATGGCAGATCCGGT 62.552 66.667 34.93 0.00 42.06 5.28
292 293 4.240103 TCGCCATGGCAGATCCGG 62.240 66.667 34.93 17.59 42.06 5.14
293 294 2.969238 GTCGCCATGGCAGATCCG 60.969 66.667 34.93 18.32 42.06 4.18
294 295 2.592861 GGTCGCCATGGCAGATCC 60.593 66.667 34.93 26.45 42.06 3.36
295 296 2.182842 GTGGTCGCCATGGCAGATC 61.183 63.158 34.93 29.49 42.06 2.75
296 297 2.124570 GTGGTCGCCATGGCAGAT 60.125 61.111 34.93 0.00 42.06 2.90
297 298 4.408821 GGTGGTCGCCATGGCAGA 62.409 66.667 34.93 27.85 42.06 4.26
298 299 4.415150 AGGTGGTCGCCATGGCAG 62.415 66.667 34.93 26.16 42.06 4.85
299 300 4.720902 CAGGTGGTCGCCATGGCA 62.721 66.667 34.93 19.88 42.06 4.92
306 307 3.628646 ATCCAAGGCAGGTGGTCGC 62.629 63.158 2.36 0.00 37.43 5.19
307 308 1.450312 GATCCAAGGCAGGTGGTCG 60.450 63.158 2.36 0.00 37.43 4.79
308 309 0.257039 ATGATCCAAGGCAGGTGGTC 59.743 55.000 0.00 1.43 37.43 4.02
309 310 0.033796 CATGATCCAAGGCAGGTGGT 60.034 55.000 0.00 0.00 37.43 4.16
310 311 1.389609 GCATGATCCAAGGCAGGTGG 61.390 60.000 0.00 0.00 37.51 4.61
311 312 0.681887 TGCATGATCCAAGGCAGGTG 60.682 55.000 0.00 0.00 0.00 4.00
312 313 1.693034 TGCATGATCCAAGGCAGGT 59.307 52.632 0.00 0.00 0.00 4.00
313 314 4.670199 TGCATGATCCAAGGCAGG 57.330 55.556 0.00 0.00 0.00 4.85
315 316 1.076559 CCCTGCATGATCCAAGGCA 60.077 57.895 0.00 0.00 34.66 4.75
316 317 2.496291 GCCCTGCATGATCCAAGGC 61.496 63.158 0.00 0.00 33.12 4.35
317 318 1.831286 GGCCCTGCATGATCCAAGG 60.831 63.158 0.00 0.00 0.00 3.61
318 319 1.831286 GGGCCCTGCATGATCCAAG 60.831 63.158 17.04 0.00 0.00 3.61
319 320 2.279743 GGGCCCTGCATGATCCAA 59.720 61.111 17.04 0.00 0.00 3.53
320 321 4.193893 CGGGCCCTGCATGATCCA 62.194 66.667 22.43 0.00 0.00 3.41
363 364 4.666253 CACCCCCAGCCACCACTG 62.666 72.222 0.00 0.00 37.42 3.66
364 365 4.918360 TCACCCCCAGCCACCACT 62.918 66.667 0.00 0.00 0.00 4.00
365 366 3.444818 TTTCACCCCCAGCCACCAC 62.445 63.158 0.00 0.00 0.00 4.16
366 367 3.106609 TTTCACCCCCAGCCACCA 61.107 61.111 0.00 0.00 0.00 4.17
367 368 2.283173 CTTTCACCCCCAGCCACC 60.283 66.667 0.00 0.00 0.00 4.61
368 369 1.303643 CTCTTTCACCCCCAGCCAC 60.304 63.158 0.00 0.00 0.00 5.01
369 370 3.170362 CTCTTTCACCCCCAGCCA 58.830 61.111 0.00 0.00 0.00 4.75
370 371 2.361737 GCTCTTTCACCCCCAGCC 60.362 66.667 0.00 0.00 0.00 4.85
371 372 2.747855 CGCTCTTTCACCCCCAGC 60.748 66.667 0.00 0.00 0.00 4.85
372 373 2.045926 CCGCTCTTTCACCCCCAG 60.046 66.667 0.00 0.00 0.00 4.45
373 374 3.646715 CCCGCTCTTTCACCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
374 375 4.426313 CCCCGCTCTTTCACCCCC 62.426 72.222 0.00 0.00 0.00 5.40
375 376 3.327404 TCCCCGCTCTTTCACCCC 61.327 66.667 0.00 0.00 0.00 4.95
376 377 2.269241 CTCCCCGCTCTTTCACCC 59.731 66.667 0.00 0.00 0.00 4.61
377 378 2.269241 CCTCCCCGCTCTTTCACC 59.731 66.667 0.00 0.00 0.00 4.02
378 379 2.269241 CCCTCCCCGCTCTTTCAC 59.731 66.667 0.00 0.00 0.00 3.18
379 380 3.009115 CCCCTCCCCGCTCTTTCA 61.009 66.667 0.00 0.00 0.00 2.69
380 381 2.603652 AACCCCTCCCCGCTCTTTC 61.604 63.158 0.00 0.00 0.00 2.62
381 382 2.531942 AACCCCTCCCCGCTCTTT 60.532 61.111 0.00 0.00 0.00 2.52
382 383 3.330720 CAACCCCTCCCCGCTCTT 61.331 66.667 0.00 0.00 0.00 2.85
395 396 4.815108 GATCCCGGGCCACCAACC 62.815 72.222 18.49 0.00 36.13 3.77
458 459 4.615815 ATCTCATGCCGCCGCCTC 62.616 66.667 0.00 0.00 0.00 4.70
459 460 4.923942 CATCTCATGCCGCCGCCT 62.924 66.667 0.00 0.00 0.00 5.52
460 461 4.916293 TCATCTCATGCCGCCGCC 62.916 66.667 0.00 0.00 0.00 6.13
461 462 3.344215 CTCATCTCATGCCGCCGC 61.344 66.667 0.00 0.00 0.00 6.53
462 463 1.005275 ATCTCATCTCATGCCGCCG 60.005 57.895 0.00 0.00 0.00 6.46
463 464 1.575576 GCATCTCATCTCATGCCGCC 61.576 60.000 0.00 0.00 39.70 6.13
464 465 1.867615 GCATCTCATCTCATGCCGC 59.132 57.895 0.00 0.00 39.70 6.53
465 466 0.319297 TCGCATCTCATCTCATGCCG 60.319 55.000 0.00 0.00 42.15 5.69
466 467 1.430479 CTCGCATCTCATCTCATGCC 58.570 55.000 0.00 0.00 42.15 4.40
467 468 1.270199 ACCTCGCATCTCATCTCATGC 60.270 52.381 0.00 0.00 41.79 4.06
468 469 2.674954 GACCTCGCATCTCATCTCATG 58.325 52.381 0.00 0.00 0.00 3.07
469 470 1.269174 CGACCTCGCATCTCATCTCAT 59.731 52.381 0.00 0.00 0.00 2.90
470 471 0.665298 CGACCTCGCATCTCATCTCA 59.335 55.000 0.00 0.00 0.00 3.27
471 472 0.665835 ACGACCTCGCATCTCATCTC 59.334 55.000 0.00 0.00 44.43 2.75
472 473 0.383590 CACGACCTCGCATCTCATCT 59.616 55.000 0.00 0.00 44.43 2.90
473 474 0.596083 CCACGACCTCGCATCTCATC 60.596 60.000 0.00 0.00 44.43 2.92
474 475 1.037579 TCCACGACCTCGCATCTCAT 61.038 55.000 0.00 0.00 44.43 2.90
475 476 1.677633 TCCACGACCTCGCATCTCA 60.678 57.895 0.00 0.00 44.43 3.27
476 477 1.226717 GTCCACGACCTCGCATCTC 60.227 63.158 0.00 0.00 44.43 2.75
477 478 2.885861 GTCCACGACCTCGCATCT 59.114 61.111 0.00 0.00 44.43 2.90
486 487 6.980051 ACAAATTCTAAATAGGTCCACGAC 57.020 37.500 0.00 0.00 0.00 4.34
487 488 6.373216 CCAACAAATTCTAAATAGGTCCACGA 59.627 38.462 0.00 0.00 0.00 4.35
488 489 6.551736 CCAACAAATTCTAAATAGGTCCACG 58.448 40.000 0.00 0.00 0.00 4.94
489 490 6.071616 TGCCAACAAATTCTAAATAGGTCCAC 60.072 38.462 0.00 0.00 0.00 4.02
490 491 6.013379 TGCCAACAAATTCTAAATAGGTCCA 58.987 36.000 0.00 0.00 0.00 4.02
491 492 6.524101 TGCCAACAAATTCTAAATAGGTCC 57.476 37.500 0.00 0.00 0.00 4.46
492 493 7.706607 GGAATGCCAACAAATTCTAAATAGGTC 59.293 37.037 0.00 0.00 34.01 3.85
493 494 7.555965 GGAATGCCAACAAATTCTAAATAGGT 58.444 34.615 0.00 0.00 34.01 3.08
494 495 6.697019 CGGAATGCCAACAAATTCTAAATAGG 59.303 38.462 0.00 0.00 34.01 2.57
495 496 7.257722 ACGGAATGCCAACAAATTCTAAATAG 58.742 34.615 0.00 0.00 34.01 1.73
496 497 7.164230 ACGGAATGCCAACAAATTCTAAATA 57.836 32.000 0.00 0.00 34.01 1.40
497 498 6.036577 ACGGAATGCCAACAAATTCTAAAT 57.963 33.333 0.00 0.00 34.01 1.40
498 499 5.461032 ACGGAATGCCAACAAATTCTAAA 57.539 34.783 0.00 0.00 34.01 1.85
499 500 6.767524 ATACGGAATGCCAACAAATTCTAA 57.232 33.333 0.00 0.00 34.01 2.10
500 501 6.018588 CGTATACGGAATGCCAACAAATTCTA 60.019 38.462 17.61 0.00 34.01 2.10
501 502 5.220777 CGTATACGGAATGCCAACAAATTCT 60.221 40.000 17.61 0.00 34.01 2.40
502 503 4.967575 CGTATACGGAATGCCAACAAATTC 59.032 41.667 17.61 0.00 35.37 2.17
503 504 4.636648 TCGTATACGGAATGCCAACAAATT 59.363 37.500 24.18 0.00 40.29 1.82
504 505 4.193090 TCGTATACGGAATGCCAACAAAT 58.807 39.130 24.18 0.00 40.29 2.32
505 506 3.597255 TCGTATACGGAATGCCAACAAA 58.403 40.909 24.18 0.00 40.29 2.83
506 507 3.248495 TCGTATACGGAATGCCAACAA 57.752 42.857 24.18 0.00 40.29 2.83
507 508 2.963548 TCGTATACGGAATGCCAACA 57.036 45.000 24.18 0.00 40.29 3.33
508 509 4.093850 AGTTTTCGTATACGGAATGCCAAC 59.906 41.667 24.18 15.96 36.63 3.77
509 510 4.255301 AGTTTTCGTATACGGAATGCCAA 58.745 39.130 24.18 7.28 36.63 4.52
510 511 3.864243 AGTTTTCGTATACGGAATGCCA 58.136 40.909 24.18 4.90 36.63 4.92
511 512 4.330620 TGAAGTTTTCGTATACGGAATGCC 59.669 41.667 24.18 12.86 36.63 4.40
512 513 5.459110 TGAAGTTTTCGTATACGGAATGC 57.541 39.130 24.18 16.85 36.63 3.56
513 514 9.976255 TTAATTGAAGTTTTCGTATACGGAATG 57.024 29.630 24.18 0.00 36.63 2.67
523 524 9.908152 CCCTTCTAAATTAATTGAAGTTTTCGT 57.092 29.630 19.27 0.00 35.47 3.85
524 525 9.353999 CCCCTTCTAAATTAATTGAAGTTTTCG 57.646 33.333 19.27 9.29 35.47 3.46
528 529 8.981659 CCATCCCCTTCTAAATTAATTGAAGTT 58.018 33.333 19.27 2.29 35.47 2.66
529 530 8.343787 TCCATCCCCTTCTAAATTAATTGAAGT 58.656 33.333 19.27 5.83 35.47 3.01
530 531 8.766994 TCCATCCCCTTCTAAATTAATTGAAG 57.233 34.615 16.14 16.14 36.59 3.02
531 532 8.343787 ACTCCATCCCCTTCTAAATTAATTGAA 58.656 33.333 0.39 1.46 0.00 2.69
532 533 7.882755 ACTCCATCCCCTTCTAAATTAATTGA 58.117 34.615 0.39 0.00 0.00 2.57
533 534 9.813826 ATACTCCATCCCCTTCTAAATTAATTG 57.186 33.333 0.39 0.00 0.00 2.32
536 537 9.455144 TGTATACTCCATCCCCTTCTAAATTAA 57.545 33.333 4.17 0.00 0.00 1.40
537 538 9.629649 ATGTATACTCCATCCCCTTCTAAATTA 57.370 33.333 4.17 0.00 0.00 1.40
538 539 7.947782 TGTATACTCCATCCCCTTCTAAATT 57.052 36.000 4.17 0.00 0.00 1.82
539 540 7.517604 ACATGTATACTCCATCCCCTTCTAAAT 59.482 37.037 0.00 0.00 0.00 1.40
540 541 6.849697 ACATGTATACTCCATCCCCTTCTAAA 59.150 38.462 0.00 0.00 0.00 1.85
541 542 6.390504 ACATGTATACTCCATCCCCTTCTAA 58.609 40.000 0.00 0.00 0.00 2.10
542 543 5.977533 ACATGTATACTCCATCCCCTTCTA 58.022 41.667 0.00 0.00 0.00 2.10
543 544 4.832492 ACATGTATACTCCATCCCCTTCT 58.168 43.478 0.00 0.00 0.00 2.85
544 545 6.017192 TCTACATGTATACTCCATCCCCTTC 58.983 44.000 5.91 0.00 0.00 3.46
545 546 5.977533 TCTACATGTATACTCCATCCCCTT 58.022 41.667 5.91 0.00 0.00 3.95
546 547 5.616975 TCTACATGTATACTCCATCCCCT 57.383 43.478 5.91 0.00 0.00 4.79
547 548 8.424918 CAATATCTACATGTATACTCCATCCCC 58.575 40.741 5.91 0.00 0.00 4.81
548 549 7.928706 GCAATATCTACATGTATACTCCATCCC 59.071 40.741 5.91 0.00 0.00 3.85
549 550 7.649705 CGCAATATCTACATGTATACTCCATCC 59.350 40.741 5.91 0.00 0.00 3.51
550 551 7.168302 GCGCAATATCTACATGTATACTCCATC 59.832 40.741 5.91 0.00 0.00 3.51
551 552 6.980978 GCGCAATATCTACATGTATACTCCAT 59.019 38.462 5.91 0.00 0.00 3.41
552 553 6.330278 GCGCAATATCTACATGTATACTCCA 58.670 40.000 5.91 0.00 0.00 3.86
553 554 5.455849 CGCGCAATATCTACATGTATACTCC 59.544 44.000 8.75 0.00 0.00 3.85
554 555 6.028368 ACGCGCAATATCTACATGTATACTC 58.972 40.000 5.73 0.00 0.00 2.59
555 556 5.950883 ACGCGCAATATCTACATGTATACT 58.049 37.500 5.73 0.00 0.00 2.12
556 557 6.504335 CGAACGCGCAATATCTACATGTATAC 60.504 42.308 5.73 0.00 0.00 1.47
557 558 5.510323 CGAACGCGCAATATCTACATGTATA 59.490 40.000 5.73 0.00 0.00 1.47
558 559 4.323602 CGAACGCGCAATATCTACATGTAT 59.676 41.667 5.73 0.00 0.00 2.29
559 560 3.666797 CGAACGCGCAATATCTACATGTA 59.333 43.478 5.73 5.25 0.00 2.29
560 561 2.471370 CGAACGCGCAATATCTACATGT 59.529 45.455 5.73 2.69 0.00 3.21
561 562 2.471370 ACGAACGCGCAATATCTACATG 59.529 45.455 5.73 0.00 42.48 3.21
562 563 2.471370 CACGAACGCGCAATATCTACAT 59.529 45.455 5.73 0.00 42.48 2.29
563 564 1.849829 CACGAACGCGCAATATCTACA 59.150 47.619 5.73 0.00 42.48 2.74
564 565 1.189446 CCACGAACGCGCAATATCTAC 59.811 52.381 5.73 0.00 42.48 2.59
565 566 1.065851 TCCACGAACGCGCAATATCTA 59.934 47.619 5.73 0.00 42.48 1.98
566 567 0.179121 TCCACGAACGCGCAATATCT 60.179 50.000 5.73 0.00 42.48 1.98
567 568 0.043310 GTCCACGAACGCGCAATATC 60.043 55.000 5.73 0.00 42.48 1.63
568 569 1.426041 GGTCCACGAACGCGCAATAT 61.426 55.000 5.73 0.00 42.48 1.28
569 570 2.095847 GGTCCACGAACGCGCAATA 61.096 57.895 5.73 0.00 42.48 1.90
570 571 2.495366 TAGGTCCACGAACGCGCAAT 62.495 55.000 5.73 0.00 42.48 3.56
571 572 2.495366 ATAGGTCCACGAACGCGCAA 62.495 55.000 5.73 0.00 42.48 4.85
572 573 2.495366 AATAGGTCCACGAACGCGCA 62.495 55.000 5.73 0.00 42.48 6.09
573 574 1.356527 AAATAGGTCCACGAACGCGC 61.357 55.000 5.73 0.00 42.48 6.86
574 575 1.850441 CTAAATAGGTCCACGAACGCG 59.150 52.381 3.53 3.53 44.79 6.01
575 576 3.155093 TCTAAATAGGTCCACGAACGC 57.845 47.619 0.00 0.00 0.00 4.84
576 577 6.091713 ACAAATTCTAAATAGGTCCACGAACG 59.908 38.462 0.00 0.00 0.00 3.95
577 578 7.373778 ACAAATTCTAAATAGGTCCACGAAC 57.626 36.000 0.00 0.00 0.00 3.95
578 579 7.094549 CCAACAAATTCTAAATAGGTCCACGAA 60.095 37.037 0.00 0.00 0.00 3.85
579 580 6.373216 CCAACAAATTCTAAATAGGTCCACGA 59.627 38.462 0.00 0.00 0.00 4.35
580 581 6.551736 CCAACAAATTCTAAATAGGTCCACG 58.448 40.000 0.00 0.00 0.00 4.94
581 582 6.071616 TGCCAACAAATTCTAAATAGGTCCAC 60.072 38.462 0.00 0.00 0.00 4.02
582 583 6.013379 TGCCAACAAATTCTAAATAGGTCCA 58.987 36.000 0.00 0.00 0.00 4.02
583 584 6.524101 TGCCAACAAATTCTAAATAGGTCC 57.476 37.500 0.00 0.00 0.00 4.46
584 585 7.706607 GGAATGCCAACAAATTCTAAATAGGTC 59.293 37.037 0.00 0.00 34.01 3.85
585 586 7.555965 GGAATGCCAACAAATTCTAAATAGGT 58.444 34.615 0.00 0.00 34.01 3.08
586 587 6.697019 CGGAATGCCAACAAATTCTAAATAGG 59.303 38.462 0.00 0.00 34.01 2.57
587 588 7.257722 ACGGAATGCCAACAAATTCTAAATAG 58.742 34.615 0.00 0.00 34.01 1.73
588 589 7.164230 ACGGAATGCCAACAAATTCTAAATA 57.836 32.000 0.00 0.00 34.01 1.40
589 590 6.036577 ACGGAATGCCAACAAATTCTAAAT 57.963 33.333 0.00 0.00 34.01 1.40
590 591 5.461032 ACGGAATGCCAACAAATTCTAAA 57.539 34.783 0.00 0.00 34.01 1.85
591 592 6.767524 ATACGGAATGCCAACAAATTCTAA 57.232 33.333 0.00 0.00 34.01 2.10
592 593 6.457663 CGAATACGGAATGCCAACAAATTCTA 60.458 38.462 0.00 0.00 34.01 2.10
593 594 5.650543 GAATACGGAATGCCAACAAATTCT 58.349 37.500 0.00 0.00 34.01 2.40
594 595 4.499040 CGAATACGGAATGCCAACAAATTC 59.501 41.667 0.00 0.00 35.72 2.17
595 596 4.156922 TCGAATACGGAATGCCAACAAATT 59.843 37.500 0.00 0.00 40.21 1.82
596 597 3.692101 TCGAATACGGAATGCCAACAAAT 59.308 39.130 0.00 0.00 40.21 2.32
597 598 3.075148 TCGAATACGGAATGCCAACAAA 58.925 40.909 0.00 0.00 40.21 2.83
598 599 2.701107 TCGAATACGGAATGCCAACAA 58.299 42.857 0.00 0.00 40.21 2.83
599 600 2.388310 TCGAATACGGAATGCCAACA 57.612 45.000 0.00 0.00 40.21 3.33
600 601 3.750639 TTTCGAATACGGAATGCCAAC 57.249 42.857 0.00 0.00 40.21 3.77
601 602 4.380023 CCTTTTTCGAATACGGAATGCCAA 60.380 41.667 5.36 0.00 36.85 4.52
602 603 3.127895 CCTTTTTCGAATACGGAATGCCA 59.872 43.478 5.36 0.00 36.85 4.92
603 604 3.128068 ACCTTTTTCGAATACGGAATGCC 59.872 43.478 16.21 0.00 36.85 4.40
604 605 4.351131 ACCTTTTTCGAATACGGAATGC 57.649 40.909 16.21 0.00 36.85 3.56
605 606 6.858993 TCAAAACCTTTTTCGAATACGGAATG 59.141 34.615 16.21 11.50 36.85 2.67
606 607 6.972722 TCAAAACCTTTTTCGAATACGGAAT 58.027 32.000 16.21 3.95 36.85 3.01
607 608 6.374565 TCAAAACCTTTTTCGAATACGGAA 57.625 33.333 16.21 0.00 40.21 4.30
608 609 5.561339 GCTCAAAACCTTTTTCGAATACGGA 60.561 40.000 16.21 0.00 40.21 4.69
609 610 4.615541 GCTCAAAACCTTTTTCGAATACGG 59.384 41.667 9.16 9.16 40.21 4.02
610 611 4.615541 GGCTCAAAACCTTTTTCGAATACG 59.384 41.667 0.00 0.00 41.26 3.06
611 612 4.921515 GGGCTCAAAACCTTTTTCGAATAC 59.078 41.667 0.00 0.00 0.00 1.89
612 613 4.585162 TGGGCTCAAAACCTTTTTCGAATA 59.415 37.500 0.00 0.00 0.00 1.75
613 614 3.386402 TGGGCTCAAAACCTTTTTCGAAT 59.614 39.130 0.00 0.00 0.00 3.34
614 615 2.761208 TGGGCTCAAAACCTTTTTCGAA 59.239 40.909 0.00 0.00 0.00 3.71
615 616 2.379972 TGGGCTCAAAACCTTTTTCGA 58.620 42.857 0.00 0.00 0.00 3.71
616 617 2.863740 GTTGGGCTCAAAACCTTTTTCG 59.136 45.455 0.00 0.00 34.28 3.46
617 618 2.863740 CGTTGGGCTCAAAACCTTTTTC 59.136 45.455 0.00 0.00 34.28 2.29
618 619 2.899976 CGTTGGGCTCAAAACCTTTTT 58.100 42.857 0.00 0.00 34.28 1.94
619 620 1.472552 GCGTTGGGCTCAAAACCTTTT 60.473 47.619 0.00 0.00 39.11 2.27
620 621 0.104120 GCGTTGGGCTCAAAACCTTT 59.896 50.000 0.00 0.00 39.11 3.11
621 622 1.040339 TGCGTTGGGCTCAAAACCTT 61.040 50.000 0.00 0.00 44.05 3.50
624 625 0.927537 GTTTGCGTTGGGCTCAAAAC 59.072 50.000 0.00 0.00 44.05 2.43
633 634 1.451651 GCATTCTTTCGTTTGCGTTGG 59.548 47.619 0.00 0.00 39.49 3.77
643 644 2.549633 ATCAAAGCCGCATTCTTTCG 57.450 45.000 0.00 0.00 31.94 3.46
647 648 1.180029 AGCAATCAAAGCCGCATTCT 58.820 45.000 0.00 0.00 0.00 2.40
659 660 2.094234 TCGGACTCGATTCAAGCAATCA 60.094 45.455 5.06 0.00 41.13 2.57
686 687 0.105964 GTAGCAGTGTGTGTGGTCCA 59.894 55.000 0.00 0.00 0.00 4.02
701 702 0.796927 GTCTTCCTTGGCAACGTAGC 59.203 55.000 0.00 0.00 42.51 3.58
760 799 4.436448 GCAGACAAGCTCGTGCGC 62.436 66.667 0.00 0.00 45.42 6.09
994 1049 2.046892 GACTGCCGCCATGACTGT 60.047 61.111 0.00 0.00 0.00 3.55
1199 1303 0.453793 CTCGGAGATGTCGAACTGCT 59.546 55.000 0.00 0.00 36.15 4.24
1238 1342 3.275088 GGAGCGACTCCGAGAACA 58.725 61.111 1.33 0.00 41.08 3.18
1264 1368 3.706373 AACGGCTGGCACGGAGAT 61.706 61.111 1.08 0.00 36.31 2.75
1286 1390 2.979676 CCGAACTTGCAGCAGCCA 60.980 61.111 0.00 0.00 41.13 4.75
1458 1583 1.200948 GTCGAGCACCGGTAGTAGTTT 59.799 52.381 6.87 0.00 39.14 2.66
1684 3724 0.810031 GAGCGGCGTACACCATTGAT 60.810 55.000 9.37 0.00 0.00 2.57
1714 3754 1.080705 CTCCTGTCCGGTTGTCGTC 60.081 63.158 0.00 0.00 37.11 4.20
1715 3755 1.397390 AACTCCTGTCCGGTTGTCGT 61.397 55.000 0.00 0.00 37.11 4.34
1716 3756 0.249741 AAACTCCTGTCCGGTTGTCG 60.250 55.000 0.00 0.00 38.88 4.35
1818 3875 6.462552 TTGTTTTCTCAATCATGTTCCACA 57.537 33.333 0.00 0.00 0.00 4.17
1836 3893 2.360801 CCACAACGAGGACCATTTGTTT 59.639 45.455 0.00 0.00 29.65 2.83
1838 3895 1.142060 TCCACAACGAGGACCATTTGT 59.858 47.619 0.00 0.00 32.34 2.83
1872 3929 9.784531 GGAAGATCATTTTCTATCCTCAATACA 57.215 33.333 0.00 0.00 0.00 2.29
1873 3930 9.784531 TGGAAGATCATTTTCTATCCTCAATAC 57.215 33.333 0.00 0.00 30.58 1.89
1875 3932 9.298250 CATGGAAGATCATTTTCTATCCTCAAT 57.702 33.333 0.00 0.00 30.58 2.57
1876 3933 8.496916 TCATGGAAGATCATTTTCTATCCTCAA 58.503 33.333 0.00 0.00 30.58 3.02
1878 3935 7.607223 CCTCATGGAAGATCATTTTCTATCCTC 59.393 40.741 0.00 0.00 34.57 3.71
1880 3937 7.390162 GTCCTCATGGAAGATCATTTTCTATCC 59.610 40.741 0.00 0.00 45.18 2.59
1881 3938 8.156165 AGTCCTCATGGAAGATCATTTTCTATC 58.844 37.037 0.00 0.00 45.18 2.08
1882 3939 8.043429 AGTCCTCATGGAAGATCATTTTCTAT 57.957 34.615 0.00 0.00 45.18 1.98
1883 3940 7.443302 AGTCCTCATGGAAGATCATTTTCTA 57.557 36.000 0.00 0.00 45.18 2.10
1884 3941 6.324601 AGTCCTCATGGAAGATCATTTTCT 57.675 37.500 0.00 0.00 45.18 2.52
1885 3942 6.238320 CGAAGTCCTCATGGAAGATCATTTTC 60.238 42.308 0.00 0.00 45.18 2.29
1887 3944 5.104776 TCGAAGTCCTCATGGAAGATCATTT 60.105 40.000 0.00 0.00 45.18 2.32
1888 3945 4.406972 TCGAAGTCCTCATGGAAGATCATT 59.593 41.667 0.00 0.00 45.18 2.57
1889 3946 3.963374 TCGAAGTCCTCATGGAAGATCAT 59.037 43.478 0.00 0.00 45.18 2.45
1890 3947 3.365472 TCGAAGTCCTCATGGAAGATCA 58.635 45.455 0.00 0.00 45.18 2.92
1891 3948 4.392921 TTCGAAGTCCTCATGGAAGATC 57.607 45.455 0.00 0.00 45.18 2.75
1893 3950 3.614150 CGTTTCGAAGTCCTCATGGAAGA 60.614 47.826 0.00 0.00 45.18 2.87
1894 3951 2.668457 CGTTTCGAAGTCCTCATGGAAG 59.332 50.000 0.00 0.00 45.18 3.46
1895 3952 2.036733 ACGTTTCGAAGTCCTCATGGAA 59.963 45.455 0.00 0.00 45.18 3.53
1897 3954 2.080286 ACGTTTCGAAGTCCTCATGG 57.920 50.000 0.00 0.00 0.00 3.66
1899 3956 4.689345 CCTTTTACGTTTCGAAGTCCTCAT 59.311 41.667 0.00 0.00 0.00 2.90
1900 3957 4.053295 CCTTTTACGTTTCGAAGTCCTCA 58.947 43.478 0.00 0.00 0.00 3.86
1902 3959 4.326504 TCCTTTTACGTTTCGAAGTCCT 57.673 40.909 0.00 0.00 0.00 3.85
1913 3979 8.893727 CATTTTCTATCCTCAATCCTTTTACGT 58.106 33.333 0.00 0.00 0.00 3.57
2000 4067 1.149101 TTCCCCTTCATAGGCCATCC 58.851 55.000 5.01 0.00 40.50 3.51
2027 4094 9.233232 CGATCAAATATCATTTGCCATCATATG 57.767 33.333 6.73 0.00 34.34 1.78
2028 4095 8.410912 CCGATCAAATATCATTTGCCATCATAT 58.589 33.333 6.73 0.00 0.00 1.78
2029 4096 7.148035 CCCGATCAAATATCATTTGCCATCATA 60.148 37.037 6.73 0.00 0.00 2.15
2091 4158 3.777106 TCCTGCATATGGCTTCCTTAG 57.223 47.619 4.56 0.00 45.15 2.18
2105 4172 5.394553 CGGATGTAGATGCTATTATCCTGCA 60.395 44.000 13.78 0.00 41.13 4.41
2109 4176 6.208988 TCACGGATGTAGATGCTATTATCC 57.791 41.667 0.00 0.00 0.00 2.59
2115 4183 2.562738 CCCATCACGGATGTAGATGCTA 59.437 50.000 11.38 0.00 38.28 3.49
2130 4198 2.441901 GGCCGGATTTGCCCATCA 60.442 61.111 5.05 0.00 43.33 3.07
2178 4246 3.772619 CCGGTCATTATCCACGGTT 57.227 52.632 0.00 0.00 39.70 4.44
2183 4251 1.202557 GGCGTAACCGGTCATTATCCA 60.203 52.381 8.04 0.00 33.68 3.41
2189 4257 0.322322 TTTGAGGCGTAACCGGTCAT 59.678 50.000 8.04 0.00 46.52 3.06
2210 4278 1.028905 ACTCGGATGCAGAGTAGCTC 58.971 55.000 5.35 0.00 46.06 4.09
2270 4342 9.621629 AAGCTAGCTAGGATAGTATGTAGTATG 57.378 37.037 19.70 0.00 41.93 2.39
2273 4347 6.819649 CGAAGCTAGCTAGGATAGTATGTAGT 59.180 42.308 19.70 0.00 41.93 2.73
2278 4352 4.871557 CGACGAAGCTAGCTAGGATAGTAT 59.128 45.833 19.70 0.00 41.93 2.12
2284 4358 1.400846 CAACGACGAAGCTAGCTAGGA 59.599 52.381 19.70 0.00 0.00 2.94
2303 4378 1.592400 GGACGTCGTGGTCATCTCCA 61.592 60.000 9.92 0.00 38.70 3.86
2362 4439 0.032217 AGCAGGAGGAGGAGGAGAAG 60.032 60.000 0.00 0.00 0.00 2.85
2363 4440 0.032615 GAGCAGGAGGAGGAGGAGAA 60.033 60.000 0.00 0.00 0.00 2.87
2364 4441 1.618030 GAGCAGGAGGAGGAGGAGA 59.382 63.158 0.00 0.00 0.00 3.71
2404 4481 0.478942 CCGTGGAGGAGGAGGAGATA 59.521 60.000 0.00 0.00 45.00 1.98
2428 4505 0.179936 GGCAGGAGATGGAGGTTCAG 59.820 60.000 0.00 0.00 0.00 3.02
2431 4508 2.370445 CCGGCAGGAGATGGAGGTT 61.370 63.158 0.00 0.00 41.02 3.50
2432 4509 2.765807 CCGGCAGGAGATGGAGGT 60.766 66.667 0.00 0.00 41.02 3.85
2457 4534 2.955660 GAGTTGGATCCAGAGACGAGAT 59.044 50.000 15.53 0.00 0.00 2.75
2469 4546 1.372087 CCTGCGCTTGGAGTTGGATC 61.372 60.000 9.73 0.00 0.00 3.36
2480 4597 1.690219 ATCCTCGATTCCCTGCGCTT 61.690 55.000 9.73 0.00 0.00 4.68
2485 4602 0.471617 AAGCCATCCTCGATTCCCTG 59.528 55.000 0.00 0.00 0.00 4.45
2508 4625 1.153086 GCGGATCTGCAGGTGGATT 60.153 57.895 21.88 0.00 34.15 3.01
2509 4626 2.507944 GCGGATCTGCAGGTGGAT 59.492 61.111 21.88 0.00 34.15 3.41
2513 4630 4.148825 GGACGCGGATCTGCAGGT 62.149 66.667 25.69 16.25 34.15 4.00
2535 4652 2.835431 AGGAGGATGCGAGGGACG 60.835 66.667 0.00 0.00 45.66 4.79
2536 4653 1.456705 AGAGGAGGATGCGAGGGAC 60.457 63.158 0.00 0.00 0.00 4.46
2541 4667 2.364186 TGCCAGAGGAGGATGCGA 60.364 61.111 0.00 0.00 0.00 5.10
2543 4669 2.191641 GGTGCCAGAGGAGGATGC 59.808 66.667 0.00 0.00 0.00 3.91
2554 4680 2.039624 GAGGAGGAGGAGGTGCCA 59.960 66.667 0.00 0.00 40.02 4.92
2595 4757 0.761702 GGGGCTACCTCCGGATGTAA 60.762 60.000 18.62 5.29 36.80 2.41
2597 4759 2.446036 GGGGCTACCTCCGGATGT 60.446 66.667 16.93 16.93 36.80 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.