Multiple sequence alignment - TraesCS1A01G357800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G357800 chr1A 100.000 3549 0 0 1 3549 540136796 540133248 0.000000e+00 6554.0
1 TraesCS1A01G357800 chr1A 91.006 467 24 2 3067 3533 569328327 569327879 6.510000e-172 614.0
2 TraesCS1A01G357800 chr1D 96.478 1221 26 8 1488 2700 444846458 444845247 0.000000e+00 2001.0
3 TraesCS1A01G357800 chr1D 90.566 1113 81 15 302 1403 444847656 444846557 0.000000e+00 1452.0
4 TraesCS1A01G357800 chr1D 90.295 577 42 9 2915 3483 66682708 66683278 0.000000e+00 743.0
5 TraesCS1A01G357800 chr1D 88.136 177 19 2 2693 2867 444844579 444844403 3.590000e-50 209.0
6 TraesCS1A01G357800 chr1B 94.703 1227 42 8 1488 2700 604835106 604833889 0.000000e+00 1884.0
7 TraesCS1A01G357800 chr1B 89.286 1064 75 25 217 1254 604836692 604835642 0.000000e+00 1297.0
8 TraesCS1A01G357800 chr1B 96.689 151 5 0 1253 1403 604835376 604835226 5.880000e-63 252.0
9 TraesCS1A01G357800 chr2D 94.062 640 32 4 2914 3549 295572645 295572008 0.000000e+00 966.0
10 TraesCS1A01G357800 chr5D 93.448 641 35 5 2910 3549 530907817 530907183 0.000000e+00 944.0
11 TraesCS1A01G357800 chr5D 84.706 85 13 0 1814 1898 336424557 336424473 6.310000e-13 86.1
12 TraesCS1A01G357800 chr6D 93.396 636 36 4 2915 3549 455627782 455628412 0.000000e+00 937.0
13 TraesCS1A01G357800 chr4A 89.449 635 39 6 2915 3549 624773197 624773803 0.000000e+00 776.0
14 TraesCS1A01G357800 chr4A 87.097 248 26 4 3090 3333 535940387 535940142 3.490000e-70 276.0
15 TraesCS1A01G357800 chr4A 86.364 242 31 2 1763 2003 670146744 670146504 2.720000e-66 263.0
16 TraesCS1A01G357800 chr5A 92.172 511 27 2 3039 3549 340404034 340403537 0.000000e+00 710.0
17 TraesCS1A01G357800 chr5A 87.059 85 11 0 1814 1898 437915006 437914922 2.920000e-16 97.1
18 TraesCS1A01G357800 chr3B 92.974 427 22 2 2914 3332 809805427 809805853 1.810000e-172 616.0
19 TraesCS1A01G357800 chr3B 93.548 155 10 0 3395 3549 809807786 809807940 7.660000e-57 231.0
20 TraesCS1A01G357800 chr3B 92.241 116 8 1 3289 3403 809805892 809806007 2.830000e-36 163.0
21 TraesCS1A01G357800 chr3D 81.913 669 73 19 2910 3549 364956715 364957364 4.060000e-144 521.0
22 TraesCS1A01G357800 chr6B 83.735 332 44 7 3010 3335 576581478 576581151 4.450000e-79 305.0
23 TraesCS1A01G357800 chr7D 86.777 242 30 2 1763 2003 54438043 54437803 5.840000e-68 268.0
24 TraesCS1A01G357800 chr7A 85.950 242 32 2 1763 2003 57979362 57979122 1.260000e-64 257.0
25 TraesCS1A01G357800 chr5B 85.882 85 12 0 1814 1898 394745741 394745657 1.360000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G357800 chr1A 540133248 540136796 3548 True 6554.000000 6554 100.000000 1 3549 1 chr1A.!!$R1 3548
1 TraesCS1A01G357800 chr1D 444844403 444847656 3253 True 1220.666667 2001 91.726667 302 2867 3 chr1D.!!$R1 2565
2 TraesCS1A01G357800 chr1D 66682708 66683278 570 False 743.000000 743 90.295000 2915 3483 1 chr1D.!!$F1 568
3 TraesCS1A01G357800 chr1B 604833889 604836692 2803 True 1144.333333 1884 93.559333 217 2700 3 chr1B.!!$R1 2483
4 TraesCS1A01G357800 chr2D 295572008 295572645 637 True 966.000000 966 94.062000 2914 3549 1 chr2D.!!$R1 635
5 TraesCS1A01G357800 chr5D 530907183 530907817 634 True 944.000000 944 93.448000 2910 3549 1 chr5D.!!$R2 639
6 TraesCS1A01G357800 chr6D 455627782 455628412 630 False 937.000000 937 93.396000 2915 3549 1 chr6D.!!$F1 634
7 TraesCS1A01G357800 chr4A 624773197 624773803 606 False 776.000000 776 89.449000 2915 3549 1 chr4A.!!$F1 634
8 TraesCS1A01G357800 chr3B 809805427 809807940 2513 False 336.666667 616 92.921000 2914 3549 3 chr3B.!!$F1 635
9 TraesCS1A01G357800 chr3D 364956715 364957364 649 False 521.000000 521 81.913000 2910 3549 1 chr3D.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 936 0.097674 GGCTATCGCACAAGCACAAG 59.902 55.0 3.88 0.0 42.27 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2881 3937 0.106894 GGAATTCGGCTAGGTCCTGG 59.893 60.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.684386 TGTTCTTGTTTGATCAACCATACTAA 57.316 30.769 7.89 0.00 33.97 2.24
26 27 8.564574 TGTTCTTGTTTGATCAACCATACTAAC 58.435 33.333 7.89 9.70 33.97 2.34
27 28 7.681939 TCTTGTTTGATCAACCATACTAACC 57.318 36.000 7.89 0.00 33.97 2.85
28 29 7.227873 TCTTGTTTGATCAACCATACTAACCA 58.772 34.615 7.89 0.00 33.97 3.67
29 30 7.721842 TCTTGTTTGATCAACCATACTAACCAA 59.278 33.333 7.89 0.00 33.97 3.67
30 31 7.209471 TGTTTGATCAACCATACTAACCAAC 57.791 36.000 7.89 0.00 33.97 3.77
31 32 6.773200 TGTTTGATCAACCATACTAACCAACA 59.227 34.615 7.89 2.17 33.97 3.33
32 33 7.285629 TGTTTGATCAACCATACTAACCAACAA 59.714 33.333 7.89 0.00 33.97 2.83
33 34 7.447374 TTGATCAACCATACTAACCAACAAG 57.553 36.000 3.38 0.00 0.00 3.16
34 35 6.539173 TGATCAACCATACTAACCAACAAGT 58.461 36.000 0.00 0.00 0.00 3.16
35 36 6.653320 TGATCAACCATACTAACCAACAAGTC 59.347 38.462 0.00 0.00 0.00 3.01
36 37 6.182507 TCAACCATACTAACCAACAAGTCT 57.817 37.500 0.00 0.00 0.00 3.24
37 38 6.597562 TCAACCATACTAACCAACAAGTCTT 58.402 36.000 0.00 0.00 0.00 3.01
38 39 7.737869 TCAACCATACTAACCAACAAGTCTTA 58.262 34.615 0.00 0.00 0.00 2.10
39 40 8.380099 TCAACCATACTAACCAACAAGTCTTAT 58.620 33.333 0.00 0.00 0.00 1.73
40 41 9.010029 CAACCATACTAACCAACAAGTCTTATT 57.990 33.333 0.00 0.00 0.00 1.40
41 42 8.788325 ACCATACTAACCAACAAGTCTTATTC 57.212 34.615 0.00 0.00 0.00 1.75
42 43 7.548075 ACCATACTAACCAACAAGTCTTATTCG 59.452 37.037 0.00 0.00 0.00 3.34
43 44 7.762615 CCATACTAACCAACAAGTCTTATTCGA 59.237 37.037 0.00 0.00 0.00 3.71
44 45 8.808529 CATACTAACCAACAAGTCTTATTCGAG 58.191 37.037 0.00 0.00 0.00 4.04
45 46 6.989659 ACTAACCAACAAGTCTTATTCGAGA 58.010 36.000 0.00 0.00 0.00 4.04
46 47 7.612677 ACTAACCAACAAGTCTTATTCGAGAT 58.387 34.615 0.00 0.00 0.00 2.75
47 48 6.727824 AACCAACAAGTCTTATTCGAGATG 57.272 37.500 0.00 0.00 0.00 2.90
48 49 5.794894 ACCAACAAGTCTTATTCGAGATGT 58.205 37.500 0.00 0.00 0.00 3.06
49 50 5.869888 ACCAACAAGTCTTATTCGAGATGTC 59.130 40.000 0.00 0.00 0.00 3.06
50 51 5.292101 CCAACAAGTCTTATTCGAGATGTCC 59.708 44.000 0.00 0.00 0.00 4.02
51 52 5.923733 ACAAGTCTTATTCGAGATGTCCT 57.076 39.130 0.00 0.00 0.00 3.85
52 53 7.258441 CAACAAGTCTTATTCGAGATGTCCTA 58.742 38.462 0.00 0.00 0.00 2.94
53 54 6.797454 ACAAGTCTTATTCGAGATGTCCTAC 58.203 40.000 0.00 0.00 0.00 3.18
54 55 6.603997 ACAAGTCTTATTCGAGATGTCCTACT 59.396 38.462 0.00 0.00 0.00 2.57
55 56 6.870971 AGTCTTATTCGAGATGTCCTACTC 57.129 41.667 0.00 0.00 0.00 2.59
56 57 5.766174 AGTCTTATTCGAGATGTCCTACTCC 59.234 44.000 0.00 0.00 0.00 3.85
57 58 5.048573 GTCTTATTCGAGATGTCCTACTCCC 60.049 48.000 0.00 0.00 0.00 4.30
58 59 1.676746 TTCGAGATGTCCTACTCCCG 58.323 55.000 0.00 0.00 0.00 5.14
59 60 0.818445 TCGAGATGTCCTACTCCCGC 60.818 60.000 0.00 0.00 0.00 6.13
60 61 1.797211 CGAGATGTCCTACTCCCGCC 61.797 65.000 0.00 0.00 0.00 6.13
61 62 0.755698 GAGATGTCCTACTCCCGCCA 60.756 60.000 0.00 0.00 0.00 5.69
62 63 0.325296 AGATGTCCTACTCCCGCCAA 60.325 55.000 0.00 0.00 0.00 4.52
63 64 0.539986 GATGTCCTACTCCCGCCAAA 59.460 55.000 0.00 0.00 0.00 3.28
64 65 0.988832 ATGTCCTACTCCCGCCAAAA 59.011 50.000 0.00 0.00 0.00 2.44
65 66 0.766131 TGTCCTACTCCCGCCAAAAA 59.234 50.000 0.00 0.00 0.00 1.94
66 67 1.162698 GTCCTACTCCCGCCAAAAAC 58.837 55.000 0.00 0.00 0.00 2.43
67 68 0.766131 TCCTACTCCCGCCAAAAACA 59.234 50.000 0.00 0.00 0.00 2.83
68 69 1.353022 TCCTACTCCCGCCAAAAACAT 59.647 47.619 0.00 0.00 0.00 2.71
69 70 1.743394 CCTACTCCCGCCAAAAACATC 59.257 52.381 0.00 0.00 0.00 3.06
70 71 2.432444 CTACTCCCGCCAAAAACATCA 58.568 47.619 0.00 0.00 0.00 3.07
71 72 1.923356 ACTCCCGCCAAAAACATCAT 58.077 45.000 0.00 0.00 0.00 2.45
72 73 1.818674 ACTCCCGCCAAAAACATCATC 59.181 47.619 0.00 0.00 0.00 2.92
73 74 0.808125 TCCCGCCAAAAACATCATCG 59.192 50.000 0.00 0.00 0.00 3.84
74 75 0.801836 CCCGCCAAAAACATCATCGC 60.802 55.000 0.00 0.00 0.00 4.58
75 76 0.109365 CCGCCAAAAACATCATCGCA 60.109 50.000 0.00 0.00 0.00 5.10
76 77 1.668337 CCGCCAAAAACATCATCGCAA 60.668 47.619 0.00 0.00 0.00 4.85
77 78 2.057316 CGCCAAAAACATCATCGCAAA 58.943 42.857 0.00 0.00 0.00 3.68
78 79 2.159986 CGCCAAAAACATCATCGCAAAC 60.160 45.455 0.00 0.00 0.00 2.93
79 80 2.157474 GCCAAAAACATCATCGCAAACC 59.843 45.455 0.00 0.00 0.00 3.27
80 81 2.736192 CCAAAAACATCATCGCAAACCC 59.264 45.455 0.00 0.00 0.00 4.11
81 82 3.554752 CCAAAAACATCATCGCAAACCCT 60.555 43.478 0.00 0.00 0.00 4.34
82 83 3.302365 AAAACATCATCGCAAACCCTG 57.698 42.857 0.00 0.00 0.00 4.45
83 84 1.909700 AACATCATCGCAAACCCTGT 58.090 45.000 0.00 0.00 0.00 4.00
84 85 1.909700 ACATCATCGCAAACCCTGTT 58.090 45.000 0.00 0.00 0.00 3.16
85 86 2.238521 ACATCATCGCAAACCCTGTTT 58.761 42.857 0.00 0.00 0.00 2.83
86 87 2.627699 ACATCATCGCAAACCCTGTTTT 59.372 40.909 0.00 0.00 0.00 2.43
87 88 3.069443 ACATCATCGCAAACCCTGTTTTT 59.931 39.130 0.00 0.00 0.00 1.94
110 111 9.781834 TTTTTCACTTTTCACTAATGTGTACTG 57.218 29.630 0.00 0.00 44.14 2.74
111 112 8.725405 TTTCACTTTTCACTAATGTGTACTGA 57.275 30.769 0.00 0.00 44.14 3.41
112 113 8.725405 TTCACTTTTCACTAATGTGTACTGAA 57.275 30.769 0.00 0.00 44.14 3.02
113 114 8.365399 TCACTTTTCACTAATGTGTACTGAAG 57.635 34.615 0.00 0.00 44.14 3.02
114 115 7.441157 TCACTTTTCACTAATGTGTACTGAAGG 59.559 37.037 0.00 0.00 44.14 3.46
115 116 7.226720 CACTTTTCACTAATGTGTACTGAAGGT 59.773 37.037 0.00 0.00 44.14 3.50
116 117 7.773690 ACTTTTCACTAATGTGTACTGAAGGTT 59.226 33.333 0.00 0.00 44.14 3.50
117 118 8.514330 TTTTCACTAATGTGTACTGAAGGTTT 57.486 30.769 0.00 0.00 44.14 3.27
118 119 8.514330 TTTCACTAATGTGTACTGAAGGTTTT 57.486 30.769 0.00 0.00 44.14 2.43
119 120 7.490962 TCACTAATGTGTACTGAAGGTTTTG 57.509 36.000 0.00 0.00 44.14 2.44
120 121 6.017440 TCACTAATGTGTACTGAAGGTTTTGC 60.017 38.462 0.00 0.00 44.14 3.68
121 122 6.017109 CACTAATGTGTACTGAAGGTTTTGCT 60.017 38.462 0.00 0.00 39.24 3.91
122 123 4.836125 ATGTGTACTGAAGGTTTTGCTG 57.164 40.909 0.00 0.00 0.00 4.41
123 124 2.357637 TGTGTACTGAAGGTTTTGCTGC 59.642 45.455 0.00 0.00 0.00 5.25
124 125 2.357637 GTGTACTGAAGGTTTTGCTGCA 59.642 45.455 0.00 0.00 0.00 4.41
125 126 2.618241 TGTACTGAAGGTTTTGCTGCAG 59.382 45.455 10.11 10.11 0.00 4.41
126 127 1.767759 ACTGAAGGTTTTGCTGCAGT 58.232 45.000 16.64 0.00 0.00 4.40
127 128 2.102578 ACTGAAGGTTTTGCTGCAGTT 58.897 42.857 16.64 0.00 33.19 3.16
128 129 2.497273 ACTGAAGGTTTTGCTGCAGTTT 59.503 40.909 16.64 0.00 33.19 2.66
129 130 2.861935 CTGAAGGTTTTGCTGCAGTTTG 59.138 45.455 16.64 0.00 0.00 2.93
130 131 2.233431 TGAAGGTTTTGCTGCAGTTTGT 59.767 40.909 16.64 0.00 0.00 2.83
131 132 3.261580 GAAGGTTTTGCTGCAGTTTGTT 58.738 40.909 16.64 0.13 0.00 2.83
132 133 2.620242 AGGTTTTGCTGCAGTTTGTTG 58.380 42.857 16.64 0.00 0.00 3.33
133 134 1.665169 GGTTTTGCTGCAGTTTGTTGG 59.335 47.619 16.64 0.00 0.00 3.77
134 135 1.665169 GTTTTGCTGCAGTTTGTTGGG 59.335 47.619 16.64 0.00 0.00 4.12
135 136 0.177604 TTTGCTGCAGTTTGTTGGGG 59.822 50.000 16.64 0.00 0.00 4.96
136 137 0.975040 TTGCTGCAGTTTGTTGGGGT 60.975 50.000 16.64 0.00 0.00 4.95
137 138 1.363807 GCTGCAGTTTGTTGGGGTC 59.636 57.895 16.64 0.00 0.00 4.46
138 139 1.391157 GCTGCAGTTTGTTGGGGTCA 61.391 55.000 16.64 0.00 0.00 4.02
139 140 0.670162 CTGCAGTTTGTTGGGGTCAG 59.330 55.000 5.25 0.00 0.00 3.51
140 141 1.363807 GCAGTTTGTTGGGGTCAGC 59.636 57.895 0.00 0.00 0.00 4.26
141 142 1.109323 GCAGTTTGTTGGGGTCAGCT 61.109 55.000 0.00 0.00 0.00 4.24
142 143 0.954452 CAGTTTGTTGGGGTCAGCTC 59.046 55.000 0.00 0.00 0.00 4.09
143 144 0.178990 AGTTTGTTGGGGTCAGCTCC 60.179 55.000 0.00 0.00 35.21 4.70
144 145 1.228124 TTTGTTGGGGTCAGCTCCG 60.228 57.895 0.00 0.00 38.38 4.63
145 146 1.990160 TTTGTTGGGGTCAGCTCCGT 61.990 55.000 0.00 0.00 38.38 4.69
146 147 2.047179 GTTGGGGTCAGCTCCGTC 60.047 66.667 0.00 0.00 38.38 4.79
147 148 3.319198 TTGGGGTCAGCTCCGTCC 61.319 66.667 0.00 0.00 38.38 4.79
150 151 3.775654 GGGTCAGCTCCGTCCCTG 61.776 72.222 0.00 0.00 37.18 4.45
151 152 4.459089 GGTCAGCTCCGTCCCTGC 62.459 72.222 0.00 0.00 0.00 4.85
152 153 3.386237 GTCAGCTCCGTCCCTGCT 61.386 66.667 0.00 0.00 37.56 4.24
155 156 4.704103 AGCTCCGTCCCTGCTGGA 62.704 66.667 11.88 0.66 42.41 3.86
162 163 2.997315 TCCCTGCTGGACTGGACG 60.997 66.667 11.88 0.00 38.61 4.79
163 164 4.087892 CCCTGCTGGACTGGACGG 62.088 72.222 11.88 0.00 39.72 4.79
164 165 3.314331 CCTGCTGGACTGGACGGT 61.314 66.667 2.92 0.00 39.72 4.83
165 166 2.047844 CTGCTGGACTGGACGGTG 60.048 66.667 0.00 0.00 0.00 4.94
166 167 2.842462 TGCTGGACTGGACGGTGT 60.842 61.111 0.00 0.00 0.00 4.16
167 168 2.357517 GCTGGACTGGACGGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
168 169 3.138625 CTGGACTGGACGGTGTGT 58.861 61.111 0.00 0.00 0.00 3.72
169 170 1.300931 CTGGACTGGACGGTGTGTG 60.301 63.158 0.00 0.00 0.00 3.82
170 171 2.028125 CTGGACTGGACGGTGTGTGT 62.028 60.000 0.00 0.00 0.00 3.72
171 172 1.300697 GGACTGGACGGTGTGTGTC 60.301 63.158 0.00 0.00 35.60 3.67
172 173 1.440060 GACTGGACGGTGTGTGTCA 59.560 57.895 0.00 0.00 38.10 3.58
173 174 0.874607 GACTGGACGGTGTGTGTCAC 60.875 60.000 0.00 0.00 45.47 3.67
257 258 2.187946 CCGAGCATGTCCCTGTCC 59.812 66.667 0.00 0.00 0.00 4.02
259 260 2.362369 CGAGCATGTCCCTGTCCCT 61.362 63.158 0.00 0.00 0.00 4.20
263 264 1.219124 CATGTCCCTGTCCCTGTCG 59.781 63.158 0.00 0.00 0.00 4.35
300 301 2.780643 GACGTCACGGTCGATCGA 59.219 61.111 27.34 15.15 0.00 3.59
304 305 2.748647 TCACGGTCGATCGAGCCA 60.749 61.111 34.18 19.68 39.23 4.75
360 361 0.793250 GTTGTTGAGAAGCCGAGAGC 59.207 55.000 0.00 0.00 44.25 4.09
403 404 0.457851 AGGGATCGTCTCTTTCGCAG 59.542 55.000 0.00 0.00 0.00 5.18
429 430 2.094659 CGCACGAGACATGTCACCC 61.095 63.158 27.02 14.34 0.00 4.61
432 433 0.670546 CACGAGACATGTCACCCACC 60.671 60.000 27.02 8.15 0.00 4.61
499 500 1.887707 CCTGCCGCTATTTCGTCCC 60.888 63.158 0.00 0.00 0.00 4.46
500 501 1.153449 CTGCCGCTATTTCGTCCCA 60.153 57.895 0.00 0.00 0.00 4.37
502 503 2.534903 GCCGCTATTTCGTCCCAGC 61.535 63.158 0.00 0.00 0.00 4.85
503 504 1.887707 CCGCTATTTCGTCCCAGCC 60.888 63.158 0.00 0.00 0.00 4.85
505 506 1.526225 GCTATTTCGTCCCAGCCCC 60.526 63.158 0.00 0.00 0.00 5.80
506 507 1.912220 CTATTTCGTCCCAGCCCCA 59.088 57.895 0.00 0.00 0.00 4.96
507 508 0.254747 CTATTTCGTCCCAGCCCCAA 59.745 55.000 0.00 0.00 0.00 4.12
508 509 0.254747 TATTTCGTCCCAGCCCCAAG 59.745 55.000 0.00 0.00 0.00 3.61
509 510 1.789576 ATTTCGTCCCAGCCCCAAGT 61.790 55.000 0.00 0.00 0.00 3.16
510 511 2.406002 TTTCGTCCCAGCCCCAAGTC 62.406 60.000 0.00 0.00 0.00 3.01
512 513 3.256960 GTCCCAGCCCCAAGTCCA 61.257 66.667 0.00 0.00 0.00 4.02
513 514 2.451493 TCCCAGCCCCAAGTCCAA 60.451 61.111 0.00 0.00 0.00 3.53
514 515 2.036256 CCCAGCCCCAAGTCCAAG 59.964 66.667 0.00 0.00 0.00 3.61
515 516 2.036256 CCAGCCCCAAGTCCAAGG 59.964 66.667 0.00 0.00 0.00 3.61
516 517 2.677875 CAGCCCCAAGTCCAAGGC 60.678 66.667 0.00 0.00 46.13 4.35
577 599 1.028905 CTCCGAGCTCTCCCTAGTTG 58.971 60.000 12.85 0.00 0.00 3.16
610 632 3.532155 GCTCTCCGCTCCCGTCAT 61.532 66.667 0.00 0.00 35.14 3.06
642 664 9.893305 GTATAATATAACAAGGAAACACATGCC 57.107 33.333 0.00 0.00 0.00 4.40
726 758 4.094442 GCTTAAAATCGATGTTCCCGAACT 59.906 41.667 3.50 0.00 41.67 3.01
737 769 2.234300 TCCCGAACTAAATCCGCATC 57.766 50.000 0.00 0.00 0.00 3.91
783 815 2.029838 ACCATCAATCGCCTTGTCTC 57.970 50.000 0.00 0.00 36.20 3.36
886 918 0.394488 CTCGTCTCCTCACCTGGCTA 60.394 60.000 0.00 0.00 0.00 3.93
889 924 0.671251 GTCTCCTCACCTGGCTATCG 59.329 60.000 0.00 0.00 0.00 2.92
901 936 0.097674 GGCTATCGCACAAGCACAAG 59.902 55.000 3.88 0.00 42.27 3.16
1113 1148 3.767044 GAGGAGGAGGAGGGAGCCC 62.767 73.684 0.00 0.00 0.00 5.19
1183 1218 2.896443 CCGTCAAGAGGAGCTCCC 59.104 66.667 29.54 19.90 36.42 4.30
1206 1242 4.742201 CGTGGGGTGAGCAGGTCG 62.742 72.222 0.00 0.00 0.00 4.79
1213 1249 1.956170 GTGAGCAGGTCGGTGTGTG 60.956 63.158 0.00 0.00 0.00 3.82
1238 1274 7.867909 TGTACTTATATTCAAAGATCAGCTCCG 59.132 37.037 0.00 0.00 0.00 4.63
1251 1290 2.874086 TCAGCTCCGATGTTTGCATATG 59.126 45.455 0.00 0.00 35.07 1.78
1307 1613 2.167075 TGACTCTGTGATCGATGCATGT 59.833 45.455 2.46 4.13 0.00 3.21
1400 1706 0.329596 AAGAAGGGCAAGCAGGGTAG 59.670 55.000 0.00 0.00 0.00 3.18
1403 1709 1.435346 AAGGGCAAGCAGGGTAGGTT 61.435 55.000 0.00 0.00 0.00 3.50
1405 1711 1.378646 GGCAAGCAGGGTAGGTTCC 60.379 63.158 0.00 0.00 0.00 3.62
1406 1712 1.745489 GCAAGCAGGGTAGGTTCCG 60.745 63.158 0.00 0.00 0.00 4.30
1408 1714 0.673644 CAAGCAGGGTAGGTTCCGTG 60.674 60.000 0.00 0.00 43.57 4.94
1409 1715 1.838073 AAGCAGGGTAGGTTCCGTGG 61.838 60.000 7.38 0.00 41.78 4.94
1410 1716 2.267961 CAGGGTAGGTTCCGTGGC 59.732 66.667 0.00 0.00 39.00 5.01
1411 1717 2.203877 AGGGTAGGTTCCGTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
1412 1718 2.267961 GGGTAGGTTCCGTGGCAG 59.732 66.667 0.00 0.00 0.00 4.85
1426 1771 2.641559 GCAGTGCCACAACAGAGC 59.358 61.111 2.85 0.00 0.00 4.09
1427 1772 2.941333 CAGTGCCACAACAGAGCG 59.059 61.111 0.00 0.00 0.00 5.03
1428 1773 1.595109 CAGTGCCACAACAGAGCGA 60.595 57.895 0.00 0.00 0.00 4.93
1430 1775 0.952497 AGTGCCACAACAGAGCGATG 60.952 55.000 0.00 0.00 0.00 3.84
1432 1777 2.037136 GCCACAACAGAGCGATGCT 61.037 57.895 0.00 0.00 43.88 3.79
1433 1778 0.740868 GCCACAACAGAGCGATGCTA 60.741 55.000 0.00 0.00 39.88 3.49
1434 1779 1.002366 CCACAACAGAGCGATGCTAC 58.998 55.000 0.00 0.00 39.88 3.58
1435 1780 1.672737 CCACAACAGAGCGATGCTACA 60.673 52.381 0.00 0.00 39.88 2.74
1436 1781 1.657594 CACAACAGAGCGATGCTACAG 59.342 52.381 0.00 0.00 39.88 2.74
1437 1782 1.273606 ACAACAGAGCGATGCTACAGT 59.726 47.619 0.00 0.00 39.88 3.55
1438 1783 1.657594 CAACAGAGCGATGCTACAGTG 59.342 52.381 0.00 0.00 39.88 3.66
1439 1784 0.891373 ACAGAGCGATGCTACAGTGT 59.109 50.000 0.00 0.00 39.88 3.55
1440 1785 2.092323 ACAGAGCGATGCTACAGTGTA 58.908 47.619 2.36 2.36 39.88 2.90
1441 1786 2.690497 ACAGAGCGATGCTACAGTGTAT 59.310 45.455 2.82 0.00 39.88 2.29
1442 1787 3.048501 CAGAGCGATGCTACAGTGTATG 58.951 50.000 2.82 0.00 39.88 2.39
1443 1788 2.690497 AGAGCGATGCTACAGTGTATGT 59.310 45.455 2.82 0.00 46.45 2.29
1444 1789 3.883489 AGAGCGATGCTACAGTGTATGTA 59.117 43.478 2.82 0.00 43.66 2.29
1445 1790 4.520874 AGAGCGATGCTACAGTGTATGTAT 59.479 41.667 2.82 3.58 43.44 2.29
1446 1791 5.705905 AGAGCGATGCTACAGTGTATGTATA 59.294 40.000 2.82 0.00 43.44 1.47
1447 1792 5.700846 AGCGATGCTACAGTGTATGTATAC 58.299 41.667 2.82 0.00 43.44 1.47
1448 1793 4.857588 GCGATGCTACAGTGTATGTATACC 59.142 45.833 2.82 0.00 43.44 2.73
1449 1794 5.335740 GCGATGCTACAGTGTATGTATACCT 60.336 44.000 2.82 0.00 43.44 3.08
1450 1795 6.128090 GCGATGCTACAGTGTATGTATACCTA 60.128 42.308 2.82 0.00 43.44 3.08
1451 1796 7.415318 GCGATGCTACAGTGTATGTATACCTAT 60.415 40.741 2.82 0.00 43.44 2.57
1452 1797 7.910683 CGATGCTACAGTGTATGTATACCTATG 59.089 40.741 2.82 0.00 43.44 2.23
1453 1798 8.651589 ATGCTACAGTGTATGTATACCTATGT 57.348 34.615 2.82 0.05 43.44 2.29
1454 1799 8.473358 TGCTACAGTGTATGTATACCTATGTT 57.527 34.615 2.82 0.00 43.44 2.71
1455 1800 8.357402 TGCTACAGTGTATGTATACCTATGTTG 58.643 37.037 2.82 0.21 43.44 3.33
1460 1805 8.630037 CAGTGTATGTATACCTATGTTGTCAGA 58.370 37.037 0.00 0.00 32.33 3.27
1464 1809 9.627395 GTATGTATACCTATGTTGTCAGATGAC 57.373 37.037 6.01 6.01 44.97 3.06
1477 1822 4.184629 GTCAGATGACTAACGCTGGAAAT 58.815 43.478 5.72 0.00 41.65 2.17
1478 1823 5.105513 TGTCAGATGACTAACGCTGGAAATA 60.106 40.000 13.74 0.00 44.99 1.40
1479 1824 5.986135 GTCAGATGACTAACGCTGGAAATAT 59.014 40.000 5.72 0.00 41.65 1.28
1484 1829 8.803235 AGATGACTAACGCTGGAAATATGTATA 58.197 33.333 0.00 0.00 0.00 1.47
1504 1870 3.784701 ACTACAGTGTATCTTGGAGCG 57.215 47.619 2.82 0.00 0.00 5.03
1582 1948 1.964373 CGCCACCACCTACACCAAC 60.964 63.158 0.00 0.00 0.00 3.77
1627 1993 2.224257 GGAGCTCAAGATCATGGAGACC 60.224 54.545 17.19 9.45 30.87 3.85
1674 2040 2.014068 GCTAAGGAGGTGGCACATGTC 61.014 57.143 20.82 12.22 44.52 3.06
1684 2050 2.100584 GTGGCACATGTCAACTCCAAAA 59.899 45.455 13.86 0.00 44.52 2.44
1696 2062 3.018423 ACTCCAAAACCCTGCCATATC 57.982 47.619 0.00 0.00 0.00 1.63
1697 2063 2.311542 ACTCCAAAACCCTGCCATATCA 59.688 45.455 0.00 0.00 0.00 2.15
1698 2064 2.689983 CTCCAAAACCCTGCCATATCAC 59.310 50.000 0.00 0.00 0.00 3.06
1699 2065 2.042297 TCCAAAACCCTGCCATATCACA 59.958 45.455 0.00 0.00 0.00 3.58
1700 2066 3.033184 CCAAAACCCTGCCATATCACAT 58.967 45.455 0.00 0.00 0.00 3.21
1701 2067 3.181473 CCAAAACCCTGCCATATCACATG 60.181 47.826 0.00 0.00 0.00 3.21
1705 2071 2.025037 ACCCTGCCATATCACATGTGTT 60.025 45.455 24.63 18.96 0.00 3.32
2533 2899 0.042581 GGGATGGGTTTGGGGACATT 59.957 55.000 0.00 0.00 42.32 2.71
2676 3056 4.224818 GCCAATCTTCATAGGCTAGATCCT 59.775 45.833 0.00 0.00 43.70 3.24
2687 3067 7.733047 TCATAGGCTAGATCCTTTTACCACATA 59.267 37.037 0.00 0.00 37.66 2.29
2727 3781 6.866480 TGGATTTTGATTCCAAGACATTAGC 58.134 36.000 0.00 0.00 40.29 3.09
2731 3785 6.757897 TTTGATTCCAAGACATTAGCGAAT 57.242 33.333 0.00 0.00 33.23 3.34
2769 3823 7.646548 TTATTTCTCGAGGATGAAGAAGAGA 57.353 36.000 13.56 0.00 33.53 3.10
2770 3824 5.574891 TTTCTCGAGGATGAAGAAGAGAG 57.425 43.478 13.56 0.00 36.32 3.20
2807 3863 4.757692 ACCCTTGAACCAATAAAATGGGA 58.242 39.130 0.00 0.00 45.18 4.37
2810 3866 6.172630 CCCTTGAACCAATAAAATGGGAAAG 58.827 40.000 0.00 0.00 45.18 2.62
2814 3870 4.551702 ACCAATAAAATGGGAAAGCACC 57.448 40.909 0.00 0.00 45.18 5.01
2830 3886 3.105283 AGCACCCCGAGTTTTACTATCT 58.895 45.455 0.00 0.00 0.00 1.98
2833 3889 5.048507 GCACCCCGAGTTTTACTATCTTAG 58.951 45.833 0.00 0.00 0.00 2.18
2836 3892 6.320672 CACCCCGAGTTTTACTATCTTAGAGA 59.679 42.308 0.00 0.00 0.00 3.10
2867 3923 4.162509 GCCGATCCCTAAAAGGCTATAGAT 59.837 45.833 3.21 0.00 44.06 1.98
2868 3924 5.338463 GCCGATCCCTAAAAGGCTATAGATT 60.338 44.000 3.21 0.00 44.06 2.40
2869 3925 6.712276 CCGATCCCTAAAAGGCTATAGATTT 58.288 40.000 3.21 4.13 32.73 2.17
2870 3926 7.168905 CCGATCCCTAAAAGGCTATAGATTTT 58.831 38.462 15.97 15.97 32.73 1.82
2871 3927 8.319146 CCGATCCCTAAAAGGCTATAGATTTTA 58.681 37.037 16.34 16.34 32.73 1.52
2872 3928 9.152595 CGATCCCTAAAAGGCTATAGATTTTAC 57.847 37.037 3.21 2.27 32.73 2.01
2883 3939 9.435570 AGGCTATAGATTTTACTTCTCTAACCA 57.564 33.333 3.21 0.00 0.00 3.67
2884 3940 9.699703 GGCTATAGATTTTACTTCTCTAACCAG 57.300 37.037 3.21 0.00 0.00 4.00
2885 3941 9.699703 GCTATAGATTTTACTTCTCTAACCAGG 57.300 37.037 3.21 0.00 0.00 4.45
2888 3944 6.948589 AGATTTTACTTCTCTAACCAGGACC 58.051 40.000 0.00 0.00 0.00 4.46
2889 3945 6.731448 AGATTTTACTTCTCTAACCAGGACCT 59.269 38.462 0.00 0.00 0.00 3.85
2890 3946 7.899709 AGATTTTACTTCTCTAACCAGGACCTA 59.100 37.037 0.00 0.00 0.00 3.08
2891 3947 7.477945 TTTTACTTCTCTAACCAGGACCTAG 57.522 40.000 0.00 0.00 0.00 3.02
2892 3948 3.367321 ACTTCTCTAACCAGGACCTAGC 58.633 50.000 0.00 0.00 0.00 3.42
2893 3949 2.456073 TCTCTAACCAGGACCTAGCC 57.544 55.000 0.00 0.00 0.00 3.93
2894 3950 1.033574 CTCTAACCAGGACCTAGCCG 58.966 60.000 0.00 0.00 0.00 5.52
2895 3951 0.627451 TCTAACCAGGACCTAGCCGA 59.373 55.000 0.00 0.00 0.00 5.54
2896 3952 1.006281 TCTAACCAGGACCTAGCCGAA 59.994 52.381 0.00 0.00 0.00 4.30
2897 3953 2.040178 CTAACCAGGACCTAGCCGAAT 58.960 52.381 0.00 0.00 0.00 3.34
2898 3954 1.286248 AACCAGGACCTAGCCGAATT 58.714 50.000 0.00 0.00 0.00 2.17
2899 3955 0.831307 ACCAGGACCTAGCCGAATTC 59.169 55.000 0.00 0.00 0.00 2.17
2900 3956 0.106894 CCAGGACCTAGCCGAATTCC 59.893 60.000 0.00 0.00 0.00 3.01
2901 3957 1.123928 CAGGACCTAGCCGAATTCCT 58.876 55.000 0.00 0.00 37.15 3.36
2902 3958 2.317040 CAGGACCTAGCCGAATTCCTA 58.683 52.381 0.00 0.00 34.80 2.94
2903 3959 2.698797 CAGGACCTAGCCGAATTCCTAA 59.301 50.000 0.00 0.00 34.80 2.69
2904 3960 3.134081 CAGGACCTAGCCGAATTCCTAAA 59.866 47.826 0.00 0.00 34.80 1.85
2905 3961 3.388350 AGGACCTAGCCGAATTCCTAAAG 59.612 47.826 0.00 0.00 34.80 1.85
2906 3962 3.132160 GACCTAGCCGAATTCCTAAAGC 58.868 50.000 0.00 0.00 0.00 3.51
2907 3963 2.135933 CCTAGCCGAATTCCTAAAGCG 58.864 52.381 0.00 0.00 0.00 4.68
2908 3964 2.483188 CCTAGCCGAATTCCTAAAGCGT 60.483 50.000 0.00 0.00 0.00 5.07
2912 3968 4.952460 AGCCGAATTCCTAAAGCGTATAA 58.048 39.130 0.00 0.00 0.00 0.98
2916 3972 5.408604 CCGAATTCCTAAAGCGTATAAGCAT 59.591 40.000 13.25 0.00 40.15 3.79
2936 3992 0.035439 GGCCGTCTCCAGGAATTTGA 60.035 55.000 0.00 0.00 0.00 2.69
2960 4020 4.503910 GGCCCAGGACAAAATACAAAATC 58.496 43.478 0.00 0.00 0.00 2.17
3044 4104 3.997021 CCAAATAATACCTCGCTAGCCAG 59.003 47.826 9.66 5.61 0.00 4.85
3065 4127 1.589716 GAACGCCTCATGCCAAAGCT 61.590 55.000 0.00 0.00 40.80 3.74
3202 4267 9.476202 ACAAAAGAATACCAAAGCAATAGTTTC 57.524 29.630 0.00 0.00 0.00 2.78
3368 4538 9.797556 CATCAATTCAGAAATCAACACATACAT 57.202 29.630 0.00 0.00 0.00 2.29
3431 6399 3.415212 CTTCTCCCAGTGCAAGAATCAA 58.585 45.455 6.04 0.00 0.00 2.57
3441 6409 7.363705 CCCAGTGCAAGAATCAATAAATTACCA 60.364 37.037 0.00 0.00 0.00 3.25
3460 6428 1.207089 CAACTGATTAGTGGCCGAGGA 59.793 52.381 0.00 0.00 37.19 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.564574 GTTAGTATGGTTGATCAAACAAGAACA 58.435 33.333 28.86 11.45 41.89 3.18
1 2 8.021396 GGTTAGTATGGTTGATCAAACAAGAAC 58.979 37.037 28.86 24.80 41.89 3.01
2 3 7.721842 TGGTTAGTATGGTTGATCAAACAAGAA 59.278 33.333 28.86 16.90 41.89 2.52
3 4 7.227873 TGGTTAGTATGGTTGATCAAACAAGA 58.772 34.615 28.86 17.41 41.89 3.02
5 6 7.285629 TGTTGGTTAGTATGGTTGATCAAACAA 59.714 33.333 28.86 15.66 41.89 2.83
6 7 6.773200 TGTTGGTTAGTATGGTTGATCAAACA 59.227 34.615 27.51 27.51 42.88 2.83
7 8 7.209471 TGTTGGTTAGTATGGTTGATCAAAC 57.791 36.000 16.88 16.88 38.12 2.93
8 9 7.504238 ACTTGTTGGTTAGTATGGTTGATCAAA 59.496 33.333 10.35 0.00 0.00 2.69
9 10 7.001674 ACTTGTTGGTTAGTATGGTTGATCAA 58.998 34.615 3.38 3.38 0.00 2.57
10 11 6.539173 ACTTGTTGGTTAGTATGGTTGATCA 58.461 36.000 0.00 0.00 0.00 2.92
11 12 6.879458 AGACTTGTTGGTTAGTATGGTTGATC 59.121 38.462 0.00 0.00 0.00 2.92
12 13 6.779860 AGACTTGTTGGTTAGTATGGTTGAT 58.220 36.000 0.00 0.00 0.00 2.57
13 14 6.182507 AGACTTGTTGGTTAGTATGGTTGA 57.817 37.500 0.00 0.00 0.00 3.18
14 15 6.877611 AAGACTTGTTGGTTAGTATGGTTG 57.122 37.500 0.00 0.00 0.00 3.77
15 16 9.227777 GAATAAGACTTGTTGGTTAGTATGGTT 57.772 33.333 1.46 0.00 0.00 3.67
16 17 7.548075 CGAATAAGACTTGTTGGTTAGTATGGT 59.452 37.037 1.46 0.00 0.00 3.55
17 18 7.762615 TCGAATAAGACTTGTTGGTTAGTATGG 59.237 37.037 1.46 0.00 0.00 2.74
18 19 8.697846 TCGAATAAGACTTGTTGGTTAGTATG 57.302 34.615 1.46 0.00 0.00 2.39
19 20 8.746530 TCTCGAATAAGACTTGTTGGTTAGTAT 58.253 33.333 1.46 0.00 0.00 2.12
20 21 8.114331 TCTCGAATAAGACTTGTTGGTTAGTA 57.886 34.615 1.46 0.00 0.00 1.82
21 22 6.989659 TCTCGAATAAGACTTGTTGGTTAGT 58.010 36.000 1.46 0.00 0.00 2.24
22 23 7.545965 ACATCTCGAATAAGACTTGTTGGTTAG 59.454 37.037 1.46 0.00 0.00 2.34
23 24 7.383687 ACATCTCGAATAAGACTTGTTGGTTA 58.616 34.615 1.46 0.00 0.00 2.85
24 25 6.231211 ACATCTCGAATAAGACTTGTTGGTT 58.769 36.000 1.46 0.00 0.00 3.67
25 26 5.794894 ACATCTCGAATAAGACTTGTTGGT 58.205 37.500 1.46 0.00 0.00 3.67
26 27 5.292101 GGACATCTCGAATAAGACTTGTTGG 59.708 44.000 1.46 1.22 0.00 3.77
27 28 6.102663 AGGACATCTCGAATAAGACTTGTTG 58.897 40.000 1.46 0.00 0.00 3.33
28 29 6.287589 AGGACATCTCGAATAAGACTTGTT 57.712 37.500 0.00 0.00 0.00 2.83
29 30 5.923733 AGGACATCTCGAATAAGACTTGT 57.076 39.130 0.00 0.00 0.00 3.16
30 31 7.033530 AGTAGGACATCTCGAATAAGACTTG 57.966 40.000 0.00 0.00 0.00 3.16
31 32 6.263617 GGAGTAGGACATCTCGAATAAGACTT 59.736 42.308 0.00 0.00 0.00 3.01
32 33 5.766174 GGAGTAGGACATCTCGAATAAGACT 59.234 44.000 0.00 0.00 0.00 3.24
33 34 5.048573 GGGAGTAGGACATCTCGAATAAGAC 60.049 48.000 0.00 0.00 0.00 3.01
34 35 5.071370 GGGAGTAGGACATCTCGAATAAGA 58.929 45.833 0.00 0.00 0.00 2.10
35 36 4.083217 CGGGAGTAGGACATCTCGAATAAG 60.083 50.000 0.00 0.00 42.03 1.73
36 37 3.819337 CGGGAGTAGGACATCTCGAATAA 59.181 47.826 0.00 0.00 42.03 1.40
37 38 3.409570 CGGGAGTAGGACATCTCGAATA 58.590 50.000 0.00 0.00 42.03 1.75
38 39 2.231529 CGGGAGTAGGACATCTCGAAT 58.768 52.381 0.00 0.00 42.03 3.34
39 40 1.676746 CGGGAGTAGGACATCTCGAA 58.323 55.000 0.00 0.00 42.03 3.71
40 41 0.818445 GCGGGAGTAGGACATCTCGA 60.818 60.000 0.00 0.00 42.03 4.04
41 42 1.655329 GCGGGAGTAGGACATCTCG 59.345 63.158 0.00 0.00 42.35 4.04
42 43 0.755698 TGGCGGGAGTAGGACATCTC 60.756 60.000 0.00 0.00 0.00 2.75
43 44 0.325296 TTGGCGGGAGTAGGACATCT 60.325 55.000 0.00 0.00 0.00 2.90
44 45 0.539986 TTTGGCGGGAGTAGGACATC 59.460 55.000 0.00 0.00 0.00 3.06
45 46 0.988832 TTTTGGCGGGAGTAGGACAT 59.011 50.000 0.00 0.00 0.00 3.06
46 47 0.766131 TTTTTGGCGGGAGTAGGACA 59.234 50.000 0.00 0.00 0.00 4.02
47 48 1.162698 GTTTTTGGCGGGAGTAGGAC 58.837 55.000 0.00 0.00 0.00 3.85
48 49 0.766131 TGTTTTTGGCGGGAGTAGGA 59.234 50.000 0.00 0.00 0.00 2.94
49 50 1.743394 GATGTTTTTGGCGGGAGTAGG 59.257 52.381 0.00 0.00 0.00 3.18
50 51 2.432444 TGATGTTTTTGGCGGGAGTAG 58.568 47.619 0.00 0.00 0.00 2.57
51 52 2.570415 TGATGTTTTTGGCGGGAGTA 57.430 45.000 0.00 0.00 0.00 2.59
52 53 1.818674 GATGATGTTTTTGGCGGGAGT 59.181 47.619 0.00 0.00 0.00 3.85
53 54 1.202177 CGATGATGTTTTTGGCGGGAG 60.202 52.381 0.00 0.00 0.00 4.30
54 55 0.808125 CGATGATGTTTTTGGCGGGA 59.192 50.000 0.00 0.00 0.00 5.14
55 56 0.801836 GCGATGATGTTTTTGGCGGG 60.802 55.000 0.00 0.00 0.00 6.13
56 57 0.109365 TGCGATGATGTTTTTGGCGG 60.109 50.000 0.00 0.00 0.00 6.13
57 58 1.695813 TTGCGATGATGTTTTTGGCG 58.304 45.000 0.00 0.00 0.00 5.69
58 59 2.157474 GGTTTGCGATGATGTTTTTGGC 59.843 45.455 0.00 0.00 0.00 4.52
59 60 2.736192 GGGTTTGCGATGATGTTTTTGG 59.264 45.455 0.00 0.00 0.00 3.28
60 61 3.429543 CAGGGTTTGCGATGATGTTTTTG 59.570 43.478 0.00 0.00 0.00 2.44
61 62 3.069443 ACAGGGTTTGCGATGATGTTTTT 59.931 39.130 0.00 0.00 0.00 1.94
62 63 2.627699 ACAGGGTTTGCGATGATGTTTT 59.372 40.909 0.00 0.00 0.00 2.43
63 64 2.238521 ACAGGGTTTGCGATGATGTTT 58.761 42.857 0.00 0.00 0.00 2.83
64 65 1.909700 ACAGGGTTTGCGATGATGTT 58.090 45.000 0.00 0.00 0.00 2.71
65 66 1.909700 AACAGGGTTTGCGATGATGT 58.090 45.000 0.00 0.00 0.00 3.06
66 67 3.302365 AAAACAGGGTTTGCGATGATG 57.698 42.857 0.00 0.00 0.00 3.07
97 98 6.017109 CAGCAAAACCTTCAGTACACATTAGT 60.017 38.462 0.00 0.00 0.00 2.24
98 99 6.373779 CAGCAAAACCTTCAGTACACATTAG 58.626 40.000 0.00 0.00 0.00 1.73
99 100 5.278266 GCAGCAAAACCTTCAGTACACATTA 60.278 40.000 0.00 0.00 0.00 1.90
100 101 4.499696 GCAGCAAAACCTTCAGTACACATT 60.500 41.667 0.00 0.00 0.00 2.71
101 102 3.004734 GCAGCAAAACCTTCAGTACACAT 59.995 43.478 0.00 0.00 0.00 3.21
102 103 2.357637 GCAGCAAAACCTTCAGTACACA 59.642 45.455 0.00 0.00 0.00 3.72
103 104 2.357637 TGCAGCAAAACCTTCAGTACAC 59.642 45.455 0.00 0.00 0.00 2.90
104 105 2.618241 CTGCAGCAAAACCTTCAGTACA 59.382 45.455 0.00 0.00 0.00 2.90
105 106 2.618709 ACTGCAGCAAAACCTTCAGTAC 59.381 45.455 15.27 0.00 37.51 2.73
106 107 2.930950 ACTGCAGCAAAACCTTCAGTA 58.069 42.857 15.27 0.00 37.51 2.74
107 108 1.767759 ACTGCAGCAAAACCTTCAGT 58.232 45.000 15.27 0.00 35.07 3.41
108 109 2.861935 CAAACTGCAGCAAAACCTTCAG 59.138 45.455 15.27 0.00 33.21 3.02
109 110 2.233431 ACAAACTGCAGCAAAACCTTCA 59.767 40.909 15.27 0.00 0.00 3.02
110 111 2.892374 ACAAACTGCAGCAAAACCTTC 58.108 42.857 15.27 0.00 0.00 3.46
111 112 3.002102 CAACAAACTGCAGCAAAACCTT 58.998 40.909 15.27 0.00 0.00 3.50
112 113 2.620242 CAACAAACTGCAGCAAAACCT 58.380 42.857 15.27 0.00 0.00 3.50
113 114 1.665169 CCAACAAACTGCAGCAAAACC 59.335 47.619 15.27 0.00 0.00 3.27
114 115 1.665169 CCCAACAAACTGCAGCAAAAC 59.335 47.619 15.27 0.00 0.00 2.43
115 116 1.406614 CCCCAACAAACTGCAGCAAAA 60.407 47.619 15.27 0.00 0.00 2.44
116 117 0.177604 CCCCAACAAACTGCAGCAAA 59.822 50.000 15.27 0.00 0.00 3.68
117 118 0.975040 ACCCCAACAAACTGCAGCAA 60.975 50.000 15.27 0.00 0.00 3.91
118 119 1.381056 ACCCCAACAAACTGCAGCA 60.381 52.632 15.27 0.00 0.00 4.41
119 120 1.363807 GACCCCAACAAACTGCAGC 59.636 57.895 15.27 0.00 0.00 5.25
120 121 0.670162 CTGACCCCAACAAACTGCAG 59.330 55.000 13.48 13.48 0.00 4.41
121 122 1.391157 GCTGACCCCAACAAACTGCA 61.391 55.000 0.00 0.00 0.00 4.41
122 123 1.109323 AGCTGACCCCAACAAACTGC 61.109 55.000 0.00 0.00 0.00 4.40
123 124 0.954452 GAGCTGACCCCAACAAACTG 59.046 55.000 0.00 0.00 0.00 3.16
124 125 0.178990 GGAGCTGACCCCAACAAACT 60.179 55.000 0.00 0.00 0.00 2.66
125 126 1.515521 CGGAGCTGACCCCAACAAAC 61.516 60.000 0.00 0.00 0.00 2.93
126 127 1.228124 CGGAGCTGACCCCAACAAA 60.228 57.895 0.00 0.00 0.00 2.83
127 128 2.391724 GACGGAGCTGACCCCAACAA 62.392 60.000 0.00 0.00 0.00 2.83
128 129 2.847234 ACGGAGCTGACCCCAACA 60.847 61.111 0.00 0.00 0.00 3.33
129 130 2.047179 GACGGAGCTGACCCCAAC 60.047 66.667 0.00 0.00 0.00 3.77
130 131 3.319198 GGACGGAGCTGACCCCAA 61.319 66.667 0.00 0.00 0.00 4.12
133 134 3.775654 CAGGGACGGAGCTGACCC 61.776 72.222 8.55 8.55 42.36 4.46
134 135 4.459089 GCAGGGACGGAGCTGACC 62.459 72.222 0.00 0.00 0.00 4.02
135 136 3.386237 AGCAGGGACGGAGCTGAC 61.386 66.667 0.00 0.00 37.20 3.51
138 139 4.704103 TCCAGCAGGGACGGAGCT 62.704 66.667 0.00 0.00 42.15 4.09
145 146 2.997315 CGTCCAGTCCAGCAGGGA 60.997 66.667 0.00 0.00 45.89 4.20
146 147 4.087892 CCGTCCAGTCCAGCAGGG 62.088 72.222 0.00 0.00 34.83 4.45
147 148 3.314331 ACCGTCCAGTCCAGCAGG 61.314 66.667 0.00 0.00 0.00 4.85
148 149 2.047844 CACCGTCCAGTCCAGCAG 60.048 66.667 0.00 0.00 0.00 4.24
149 150 2.842462 ACACCGTCCAGTCCAGCA 60.842 61.111 0.00 0.00 0.00 4.41
150 151 2.357517 CACACCGTCCAGTCCAGC 60.358 66.667 0.00 0.00 0.00 4.85
151 152 1.300931 CACACACCGTCCAGTCCAG 60.301 63.158 0.00 0.00 0.00 3.86
152 153 2.023414 GACACACACCGTCCAGTCCA 62.023 60.000 0.00 0.00 0.00 4.02
153 154 1.300697 GACACACACCGTCCAGTCC 60.301 63.158 0.00 0.00 0.00 3.85
154 155 0.874607 GTGACACACACCGTCCAGTC 60.875 60.000 0.00 0.00 43.05 3.51
155 156 1.143183 GTGACACACACCGTCCAGT 59.857 57.895 0.00 0.00 43.05 4.00
156 157 1.949133 CGTGACACACACCGTCCAG 60.949 63.158 6.37 0.00 45.73 3.86
157 158 2.105328 CGTGACACACACCGTCCA 59.895 61.111 6.37 0.00 45.73 4.02
158 159 1.947642 GTCGTGACACACACCGTCC 60.948 63.158 6.37 0.00 45.73 4.79
159 160 1.226745 TGTCGTGACACACACCGTC 60.227 57.895 6.37 0.00 45.73 4.79
160 161 2.886610 TGTCGTGACACACACCGT 59.113 55.556 6.37 0.00 45.73 4.83
172 173 4.678269 CGAGCACGTCCGTGTCGT 62.678 66.667 23.57 11.61 46.90 4.34
242 243 1.222936 CAGGGACAGGGACATGCTC 59.777 63.158 0.00 0.00 0.00 4.26
243 244 1.539869 ACAGGGACAGGGACATGCT 60.540 57.895 0.00 0.00 0.00 3.79
246 247 1.990060 CCGACAGGGACAGGGACAT 60.990 63.158 0.00 0.00 38.47 3.06
247 248 2.603473 CCGACAGGGACAGGGACA 60.603 66.667 0.00 0.00 38.47 4.02
360 361 4.379339 TTTTCTTTCGGGTGAAAACCTG 57.621 40.909 0.00 0.00 43.21 4.00
403 404 3.112709 GTCTCGTGCGCTTCACCC 61.113 66.667 9.73 0.00 42.69 4.61
499 500 2.677875 GCCTTGGACTTGGGGCTG 60.678 66.667 0.00 0.00 41.20 4.85
500 501 3.984732 GGCCTTGGACTTGGGGCT 61.985 66.667 0.00 0.00 43.62 5.19
502 503 4.382541 GGGGCCTTGGACTTGGGG 62.383 72.222 0.84 0.00 0.00 4.96
503 504 4.740822 CGGGGCCTTGGACTTGGG 62.741 72.222 0.84 0.00 0.00 4.12
505 506 1.112916 AAAACGGGGCCTTGGACTTG 61.113 55.000 0.84 0.00 0.00 3.16
506 507 1.112916 CAAAACGGGGCCTTGGACTT 61.113 55.000 0.84 0.00 0.00 3.01
507 508 1.530655 CAAAACGGGGCCTTGGACT 60.531 57.895 0.84 0.00 0.00 3.85
508 509 2.570284 CCAAAACGGGGCCTTGGAC 61.570 63.158 15.36 0.00 41.88 4.02
509 510 2.203567 CCAAAACGGGGCCTTGGA 60.204 61.111 15.36 0.00 41.88 3.53
510 511 2.523168 ACCAAAACGGGGCCTTGG 60.523 61.111 18.05 18.05 44.35 3.61
566 588 2.656069 GCGTGGCCAACTAGGGAGA 61.656 63.158 7.24 0.00 38.09 3.71
577 599 1.502163 GAGCATATGTCTGCGTGGCC 61.502 60.000 4.29 0.00 46.86 5.36
642 664 3.011760 GAGTTTCTTGGCGACGGCG 62.012 63.158 17.16 6.12 41.24 6.46
726 758 4.802039 GTCTGTCTTTACGATGCGGATTTA 59.198 41.667 0.00 0.00 0.00 1.40
737 769 0.797249 CTCCCGCGTCTGTCTTTACG 60.797 60.000 4.92 0.00 41.92 3.18
783 815 1.406860 GGCAGCTAGGGAGGAGAAGG 61.407 65.000 0.00 0.00 0.00 3.46
906 941 2.190578 GAGGACGGAGGGCAATGG 59.809 66.667 0.00 0.00 0.00 3.16
931 966 2.146920 ACCAAGGAAACCCAACGAAA 57.853 45.000 0.00 0.00 0.00 3.46
1194 1229 2.357517 CACACCGACCTGCTCACC 60.358 66.667 0.00 0.00 0.00 4.02
1206 1242 9.378551 TGATCTTTGAATATAAGTACACACACC 57.621 33.333 0.00 0.00 0.00 4.16
1213 1249 8.082852 TCGGAGCTGATCTTTGAATATAAGTAC 58.917 37.037 0.00 0.00 0.00 2.73
1251 1290 2.565210 TCAAATCAATCGTGGCATGC 57.435 45.000 9.90 9.90 0.00 4.06
1258 1564 5.183713 ACCATCACAACATCAAATCAATCGT 59.816 36.000 0.00 0.00 0.00 3.73
1307 1613 1.146041 GTCCACCGATGCCTGCATA 59.854 57.895 4.30 0.00 36.70 3.14
1409 1715 2.641559 GCTCTGTTGTGGCACTGC 59.358 61.111 19.83 11.72 0.00 4.40
1410 1716 0.952497 ATCGCTCTGTTGTGGCACTG 60.952 55.000 19.83 6.67 0.00 3.66
1411 1717 0.952497 CATCGCTCTGTTGTGGCACT 60.952 55.000 19.83 0.00 0.00 4.40
1412 1718 1.499056 CATCGCTCTGTTGTGGCAC 59.501 57.895 11.55 11.55 0.00 5.01
1421 1766 2.851805 TACACTGTAGCATCGCTCTG 57.148 50.000 0.00 0.00 40.44 3.35
1425 1770 4.857588 GGTATACATACACTGTAGCATCGC 59.142 45.833 5.01 0.00 43.44 4.58
1426 1771 6.255596 AGGTATACATACACTGTAGCATCG 57.744 41.667 5.01 0.00 43.44 3.84
1427 1772 8.740906 ACATAGGTATACATACACTGTAGCATC 58.259 37.037 5.01 0.00 43.44 3.91
1428 1773 8.651589 ACATAGGTATACATACACTGTAGCAT 57.348 34.615 5.01 0.00 43.44 3.79
1430 1775 8.358148 ACAACATAGGTATACATACACTGTAGC 58.642 37.037 5.01 0.00 43.44 3.58
1432 1777 9.411189 TGACAACATAGGTATACATACACTGTA 57.589 33.333 5.01 0.00 44.29 2.74
1433 1778 8.301252 TGACAACATAGGTATACATACACTGT 57.699 34.615 5.01 6.14 42.13 3.55
1434 1779 8.630037 TCTGACAACATAGGTATACATACACTG 58.370 37.037 5.01 0.38 34.98 3.66
1435 1780 8.762481 TCTGACAACATAGGTATACATACACT 57.238 34.615 5.01 0.00 34.98 3.55
1436 1781 9.411801 CATCTGACAACATAGGTATACATACAC 57.588 37.037 5.01 0.00 34.98 2.90
1437 1782 9.362151 TCATCTGACAACATAGGTATACATACA 57.638 33.333 5.01 0.00 34.98 2.29
1438 1783 9.627395 GTCATCTGACAACATAGGTATACATAC 57.373 37.037 5.01 0.00 44.18 2.39
1455 1800 2.941453 TCCAGCGTTAGTCATCTGAC 57.059 50.000 2.01 2.01 45.08 3.51
1460 1805 8.585881 AGTATACATATTTCCAGCGTTAGTCAT 58.414 33.333 5.50 0.00 0.00 3.06
1484 1829 3.090037 ACGCTCCAAGATACACTGTAGT 58.910 45.455 0.00 0.00 0.00 2.73
1504 1870 1.716826 CTGCCTCCTCCTCGTCGTAC 61.717 65.000 0.00 0.00 0.00 3.67
1582 1948 0.102481 CGTAGTCCATGACCGGGAAG 59.898 60.000 6.32 0.00 35.88 3.46
1648 2014 2.202756 CACCTCCTTAGCGACGCC 60.203 66.667 17.79 0.00 0.00 5.68
1674 2040 1.341080 ATGGCAGGGTTTTGGAGTTG 58.659 50.000 0.00 0.00 0.00 3.16
1684 2050 1.565759 ACACATGTGATATGGCAGGGT 59.434 47.619 31.94 1.87 0.00 4.34
1696 2062 7.009631 CGTAAGAGGAGATTAGAAACACATGTG 59.990 40.741 24.25 24.25 43.02 3.21
1697 2063 7.036220 CGTAAGAGGAGATTAGAAACACATGT 58.964 38.462 0.00 0.00 43.02 3.21
1698 2064 7.009631 CACGTAAGAGGAGATTAGAAACACATG 59.990 40.741 0.00 0.00 43.62 3.21
1699 2065 7.036220 CACGTAAGAGGAGATTAGAAACACAT 58.964 38.462 0.00 0.00 43.62 3.21
1700 2066 6.387465 CACGTAAGAGGAGATTAGAAACACA 58.613 40.000 0.00 0.00 43.62 3.72
1701 2067 5.288952 GCACGTAAGAGGAGATTAGAAACAC 59.711 44.000 0.00 0.00 43.62 3.32
1705 2071 4.142227 GGTGCACGTAAGAGGAGATTAGAA 60.142 45.833 11.45 0.00 43.62 2.10
2111 2477 1.383109 TCGTGGGAGGGAGCATGAT 60.383 57.895 0.00 0.00 0.00 2.45
2533 2899 0.390603 ACAACTATTGTAGCGCCGCA 60.391 50.000 13.36 0.00 43.27 5.69
2698 3752 7.773489 TGTCTTGGAATCAAAATCCATTGTA 57.227 32.000 0.00 0.00 45.99 2.41
2701 3755 7.983484 GCTAATGTCTTGGAATCAAAATCCATT 59.017 33.333 0.00 0.00 45.99 3.16
2713 3767 7.103641 AGTAAGAATTCGCTAATGTCTTGGAA 58.896 34.615 13.60 0.00 31.19 3.53
2718 3772 6.472686 AGGAGTAAGAATTCGCTAATGTCT 57.527 37.500 0.00 0.00 0.00 3.41
2776 3832 4.650972 TTGGTTCAAGGGTAGCTGTATT 57.349 40.909 0.00 0.00 0.00 1.89
2777 3833 4.862641 ATTGGTTCAAGGGTAGCTGTAT 57.137 40.909 0.00 0.00 0.00 2.29
2807 3863 2.651382 AGTAAAACTCGGGGTGCTTT 57.349 45.000 0.00 0.00 0.00 3.51
2810 3866 3.538634 AGATAGTAAAACTCGGGGTGC 57.461 47.619 0.00 0.00 0.00 5.01
2814 3870 8.852135 AGATTCTCTAAGATAGTAAAACTCGGG 58.148 37.037 0.00 0.00 0.00 5.14
2819 3875 9.389570 GCTCGAGATTCTCTAAGATAGTAAAAC 57.610 37.037 18.75 0.00 0.00 2.43
2830 3886 2.814919 GGATCGGCTCGAGATTCTCTAA 59.185 50.000 18.75 0.00 39.91 2.10
2833 3889 0.242555 GGGATCGGCTCGAGATTCTC 59.757 60.000 18.75 6.78 39.91 2.87
2836 3892 1.996798 TTAGGGATCGGCTCGAGATT 58.003 50.000 18.75 0.00 39.91 2.40
2842 3898 3.008141 GCCTTTTAGGGATCGGCTC 57.992 57.895 0.00 0.00 37.76 4.70
2846 3902 9.152595 GTAAAATCTATAGCCTTTTAGGGATCG 57.847 37.037 15.01 0.00 35.37 3.69
2867 3923 6.070938 GCTAGGTCCTGGTTAGAGAAGTAAAA 60.071 42.308 0.00 0.00 0.00 1.52
2868 3924 5.421374 GCTAGGTCCTGGTTAGAGAAGTAAA 59.579 44.000 0.00 0.00 0.00 2.01
2869 3925 4.954826 GCTAGGTCCTGGTTAGAGAAGTAA 59.045 45.833 0.00 0.00 0.00 2.24
2870 3926 4.534797 GCTAGGTCCTGGTTAGAGAAGTA 58.465 47.826 0.00 0.00 0.00 2.24
2871 3927 3.367321 GCTAGGTCCTGGTTAGAGAAGT 58.633 50.000 0.00 0.00 0.00 3.01
2872 3928 2.696187 GGCTAGGTCCTGGTTAGAGAAG 59.304 54.545 0.00 0.00 0.00 2.85
2873 3929 2.748388 GGCTAGGTCCTGGTTAGAGAA 58.252 52.381 0.00 0.00 0.00 2.87
2874 3930 1.409802 CGGCTAGGTCCTGGTTAGAGA 60.410 57.143 0.00 0.00 0.00 3.10
2875 3931 1.033574 CGGCTAGGTCCTGGTTAGAG 58.966 60.000 0.00 0.00 0.00 2.43
2876 3932 0.627451 TCGGCTAGGTCCTGGTTAGA 59.373 55.000 0.00 0.00 0.00 2.10
2877 3933 1.481871 TTCGGCTAGGTCCTGGTTAG 58.518 55.000 0.00 0.00 0.00 2.34
2878 3934 2.170012 ATTCGGCTAGGTCCTGGTTA 57.830 50.000 0.00 0.00 0.00 2.85
2879 3935 1.209747 GAATTCGGCTAGGTCCTGGTT 59.790 52.381 0.00 0.00 0.00 3.67
2880 3936 0.831307 GAATTCGGCTAGGTCCTGGT 59.169 55.000 0.00 0.00 0.00 4.00
2881 3937 0.106894 GGAATTCGGCTAGGTCCTGG 59.893 60.000 0.00 0.00 0.00 4.45
2882 3938 1.123928 AGGAATTCGGCTAGGTCCTG 58.876 55.000 0.00 0.00 37.33 3.86
2883 3939 2.769602 TAGGAATTCGGCTAGGTCCT 57.230 50.000 0.00 0.00 41.60 3.85
2884 3940 3.729966 CTTTAGGAATTCGGCTAGGTCC 58.270 50.000 0.00 0.00 0.00 4.46
2885 3941 3.132160 GCTTTAGGAATTCGGCTAGGTC 58.868 50.000 0.00 0.00 0.00 3.85
2886 3942 2.483188 CGCTTTAGGAATTCGGCTAGGT 60.483 50.000 0.00 0.00 0.00 3.08
2887 3943 2.135933 CGCTTTAGGAATTCGGCTAGG 58.864 52.381 0.00 0.00 0.00 3.02
2888 3944 2.822764 ACGCTTTAGGAATTCGGCTAG 58.177 47.619 0.00 0.00 0.00 3.42
2889 3945 2.973694 ACGCTTTAGGAATTCGGCTA 57.026 45.000 0.00 0.00 0.00 3.93
2890 3946 2.973694 TACGCTTTAGGAATTCGGCT 57.026 45.000 0.00 0.00 0.00 5.52
2891 3947 4.377124 GCTTATACGCTTTAGGAATTCGGC 60.377 45.833 0.00 0.00 0.00 5.54
2892 3948 4.748102 TGCTTATACGCTTTAGGAATTCGG 59.252 41.667 2.63 0.00 0.00 4.30
2893 3949 5.900339 TGCTTATACGCTTTAGGAATTCG 57.100 39.130 2.63 0.00 0.00 3.34
2894 3950 6.603095 CCATGCTTATACGCTTTAGGAATTC 58.397 40.000 2.63 0.00 0.00 2.17
2895 3951 5.048713 GCCATGCTTATACGCTTTAGGAATT 60.049 40.000 2.63 0.00 0.00 2.17
2896 3952 4.455877 GCCATGCTTATACGCTTTAGGAAT 59.544 41.667 2.63 0.00 0.00 3.01
2897 3953 3.813166 GCCATGCTTATACGCTTTAGGAA 59.187 43.478 2.63 0.00 0.00 3.36
2898 3954 3.399330 GCCATGCTTATACGCTTTAGGA 58.601 45.455 2.63 0.00 0.00 2.94
2899 3955 2.484264 GGCCATGCTTATACGCTTTAGG 59.516 50.000 0.00 1.08 0.00 2.69
2900 3956 2.157668 CGGCCATGCTTATACGCTTTAG 59.842 50.000 2.24 0.00 0.00 1.85
2901 3957 2.139917 CGGCCATGCTTATACGCTTTA 58.860 47.619 2.24 0.00 0.00 1.85
2902 3958 0.944386 CGGCCATGCTTATACGCTTT 59.056 50.000 2.24 0.00 0.00 3.51
2903 3959 0.179056 ACGGCCATGCTTATACGCTT 60.179 50.000 2.24 0.00 0.00 4.68
2904 3960 0.600255 GACGGCCATGCTTATACGCT 60.600 55.000 2.24 0.00 0.00 5.07
2905 3961 0.600255 AGACGGCCATGCTTATACGC 60.600 55.000 2.24 0.00 0.00 4.42
2906 3962 1.419374 GAGACGGCCATGCTTATACG 58.581 55.000 2.24 0.00 0.00 3.06
2907 3963 1.070134 TGGAGACGGCCATGCTTATAC 59.930 52.381 2.24 0.00 31.66 1.47
2908 3964 1.344438 CTGGAGACGGCCATGCTTATA 59.656 52.381 2.24 0.00 37.30 0.98
2912 3968 3.790437 CCTGGAGACGGCCATGCT 61.790 66.667 2.24 0.00 37.30 3.79
2916 3972 0.322456 CAAATTCCTGGAGACGGCCA 60.322 55.000 2.24 0.00 36.30 5.36
2936 3992 1.080638 TGTATTTTGTCCTGGGCCCT 58.919 50.000 25.70 0.50 0.00 5.19
3006 4066 7.672983 ATTATTTGGCCAGTGTAGATATTCG 57.327 36.000 5.11 0.00 0.00 3.34
3044 4104 1.937546 CTTTGGCATGAGGCGTTCCC 61.938 60.000 0.00 0.00 46.16 3.97
3108 4170 5.798125 TGGTTCCATTGTTAAGCATTGAA 57.202 34.783 0.00 0.00 31.96 2.69
3202 4267 5.035556 ACATATGGGAGGAATAGATGAGGG 58.964 45.833 7.80 0.00 0.00 4.30
3368 4538 4.438608 GCACTTGAAGTTTGACACACATGA 60.439 41.667 0.00 0.00 0.00 3.07
3374 4545 4.558538 AGATGCACTTGAAGTTTGACAC 57.441 40.909 0.00 0.00 0.00 3.67
3375 4546 5.581126 AAAGATGCACTTGAAGTTTGACA 57.419 34.783 0.00 0.00 38.98 3.58
3431 6399 6.262273 CGGCCACTAATCAGTTGGTAATTTAT 59.738 38.462 2.24 0.00 30.46 1.40
3441 6409 1.482593 CTCCTCGGCCACTAATCAGTT 59.517 52.381 2.24 0.00 30.46 3.16
3460 6428 0.038744 CCAAATCTGGTGCTGGTCCT 59.961 55.000 0.00 0.00 38.00 3.85
3486 6456 0.445436 CGCTGAATGCAGGACTTGTC 59.555 55.000 1.96 0.00 42.53 3.18
3487 6457 0.957395 CCGCTGAATGCAGGACTTGT 60.957 55.000 1.96 0.00 42.53 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.