Multiple sequence alignment - TraesCS1A01G357500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G357500 chr1A 100.000 5686 0 0 1 5686 540047068 540052753 0.000000e+00 10501
1 TraesCS1A01G357500 chr1D 91.705 4581 215 67 1 4470 444361411 444365937 0.000000e+00 6202
2 TraesCS1A01G357500 chr1D 90.919 936 36 17 4468 5367 444365969 444366891 0.000000e+00 1212
3 TraesCS1A01G357500 chr1B 95.329 1306 47 4 3006 4298 604551270 604552574 0.000000e+00 2061
4 TraesCS1A01G357500 chr1B 92.438 1296 84 12 1664 2954 604549974 604551260 0.000000e+00 1838
5 TraesCS1A01G357500 chr1B 86.036 1733 111 46 1 1653 604548249 604549930 0.000000e+00 1738
6 TraesCS1A01G357500 chr1B 90.179 896 63 16 4468 5350 604552937 604553820 0.000000e+00 1144
7 TraesCS1A01G357500 chr1B 89.198 324 31 2 4150 4470 604552583 604552905 8.870000e-108 401
8 TraesCS1A01G357500 chr6B 86.624 157 21 0 3056 3212 241145742 241145586 2.110000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G357500 chr1A 540047068 540052753 5685 False 10501.0 10501 100.000 1 5686 1 chr1A.!!$F1 5685
1 TraesCS1A01G357500 chr1D 444361411 444366891 5480 False 3707.0 6202 91.312 1 5367 2 chr1D.!!$F1 5366
2 TraesCS1A01G357500 chr1B 604548249 604553820 5571 False 1436.4 2061 90.636 1 5350 5 chr1B.!!$F1 5349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 342 0.037326 GCCCACGTGTCATGAGAGAA 60.037 55.000 15.65 0.0 0.00 2.87 F
466 524 0.108138 CTACCACACTACCAGCCAGC 60.108 60.000 0.00 0.0 0.00 4.85 F
755 847 0.393132 CTCCTCGCCCCCTTTTCTTC 60.393 60.000 0.00 0.0 0.00 2.87 F
896 988 0.596577 GGTTCTGGCGGTTTTTCTCC 59.403 55.000 0.00 0.0 0.00 3.71 F
2613 2756 0.178924 AATGCCTGCCCTTCTGGTTT 60.179 50.000 0.00 0.0 36.29 3.27 F
2852 2996 0.841961 CCAGATGCATGGAGGGAGAA 59.158 55.000 2.46 0.0 43.57 2.87 F
4340 4660 1.000274 GCGAAAAACTGTTCCATGCCT 60.000 47.619 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1443 0.107165 GGAATTCTCACCCTTCCCCG 60.107 60.000 5.23 0.00 33.74 5.73 R
1380 1482 0.953727 GTTCACTTCATGCTGCACCA 59.046 50.000 3.57 0.00 0.00 4.17 R
2449 2589 1.757118 TGATCCCGGCAACAACAAAAA 59.243 42.857 0.00 0.00 0.00 1.94 R
2774 2918 1.068333 CGGAAAGGCAGGAATTGTGTG 60.068 52.381 0.00 0.00 0.00 3.82 R
4443 4763 0.033504 GGGAACAGCTCAGTTCGTCA 59.966 55.000 9.98 0.00 46.81 4.35 R
4444 4764 0.318762 AGGGAACAGCTCAGTTCGTC 59.681 55.000 9.98 6.03 46.81 4.20 R
5465 5882 0.106419 TTTGTGTCCACCTCCAACCC 60.106 55.000 0.00 0.00 0.00 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 194 0.321653 ATCCTCTTTTTCACCGCGCT 60.322 50.000 5.56 0.00 0.00 5.92
212 241 2.992114 ACGCACGCTCCTTCCTCT 60.992 61.111 0.00 0.00 0.00 3.69
307 337 1.913262 AGGAGCCCACGTGTCATGA 60.913 57.895 15.65 0.00 0.00 3.07
308 338 1.448540 GGAGCCCACGTGTCATGAG 60.449 63.158 15.65 0.00 0.00 2.90
309 339 1.591703 GAGCCCACGTGTCATGAGA 59.408 57.895 15.65 0.00 0.00 3.27
310 340 0.459237 GAGCCCACGTGTCATGAGAG 60.459 60.000 15.65 0.00 0.00 3.20
312 342 0.037326 GCCCACGTGTCATGAGAGAA 60.037 55.000 15.65 0.00 0.00 2.87
355 392 0.735632 GCTTCACTGGCTCACTCTCG 60.736 60.000 0.00 0.00 0.00 4.04
372 409 1.226267 CGCTCTCACTCGCTCACTC 60.226 63.158 0.00 0.00 0.00 3.51
373 410 1.879480 GCTCTCACTCGCTCACTCA 59.121 57.895 0.00 0.00 0.00 3.41
390 448 4.756642 TCACTCACTCTCGCATTTCATTTT 59.243 37.500 0.00 0.00 0.00 1.82
391 449 5.239306 TCACTCACTCTCGCATTTCATTTTT 59.761 36.000 0.00 0.00 0.00 1.94
402 460 9.361712 CTCGCATTTCATTTTTCTTTTTCTTTC 57.638 29.630 0.00 0.00 0.00 2.62
432 490 2.320587 CGTCACCTCACCTTGCTGC 61.321 63.158 0.00 0.00 0.00 5.25
433 491 1.072159 GTCACCTCACCTTGCTGCT 59.928 57.895 0.00 0.00 0.00 4.24
434 492 1.071987 TCACCTCACCTTGCTGCTG 59.928 57.895 0.00 0.00 0.00 4.41
435 493 2.282040 ACCTCACCTTGCTGCTGC 60.282 61.111 8.89 8.89 40.20 5.25
466 524 0.108138 CTACCACACTACCAGCCAGC 60.108 60.000 0.00 0.00 0.00 4.85
467 525 1.550130 TACCACACTACCAGCCAGCC 61.550 60.000 0.00 0.00 0.00 4.85
468 526 2.749682 CACACTACCAGCCAGCCA 59.250 61.111 0.00 0.00 0.00 4.75
469 527 1.376424 CACACTACCAGCCAGCCAG 60.376 63.158 0.00 0.00 0.00 4.85
472 530 1.992277 ACTACCAGCCAGCCAGAGG 60.992 63.158 0.00 0.00 0.00 3.69
487 568 4.814041 AGGCAGCCTCCTCTCCCC 62.814 72.222 8.70 0.00 0.00 4.81
560 645 4.162690 GTTCCGCCGCATCCTCCT 62.163 66.667 0.00 0.00 0.00 3.69
561 646 3.849951 TTCCGCCGCATCCTCCTC 61.850 66.667 0.00 0.00 0.00 3.71
562 647 4.841617 TCCGCCGCATCCTCCTCT 62.842 66.667 0.00 0.00 0.00 3.69
605 690 4.593864 GTCGCTCCCCAGATCCGC 62.594 72.222 0.00 0.00 0.00 5.54
664 756 1.663494 CACTGCTTCGAGCGTTTTTC 58.337 50.000 3.08 0.00 46.26 2.29
749 841 2.446802 GGATCTCCTCGCCCCCTT 60.447 66.667 0.00 0.00 0.00 3.95
751 843 1.636769 GGATCTCCTCGCCCCCTTTT 61.637 60.000 0.00 0.00 0.00 2.27
754 846 0.840722 TCTCCTCGCCCCCTTTTCTT 60.841 55.000 0.00 0.00 0.00 2.52
755 847 0.393132 CTCCTCGCCCCCTTTTCTTC 60.393 60.000 0.00 0.00 0.00 2.87
792 884 6.215495 TGATCCGTTTCTGGTTTTCTTTTT 57.785 33.333 0.00 0.00 0.00 1.94
793 885 6.270064 TGATCCGTTTCTGGTTTTCTTTTTC 58.730 36.000 0.00 0.00 0.00 2.29
794 886 5.907866 TCCGTTTCTGGTTTTCTTTTTCT 57.092 34.783 0.00 0.00 0.00 2.52
837 929 1.008538 GTGGTTGCTTTCACTGCGG 60.009 57.895 0.00 0.00 0.00 5.69
896 988 0.596577 GGTTCTGGCGGTTTTTCTCC 59.403 55.000 0.00 0.00 0.00 3.71
961 1057 4.021925 GGTTCGGCTGCAGGGTCT 62.022 66.667 17.12 0.00 0.00 3.85
964 1060 2.515979 TTCGGCTGCAGGGTCTGAA 61.516 57.895 17.12 12.52 32.44 3.02
966 1062 2.753029 GGCTGCAGGGTCTGAAGT 59.247 61.111 17.12 0.00 39.27 3.01
1098 1194 5.411669 GGCCAAGGATTTATCGGTATGTTAG 59.588 44.000 0.00 0.00 0.00 2.34
1100 1196 6.073222 GCCAAGGATTTATCGGTATGTTAGTG 60.073 42.308 0.00 0.00 0.00 2.74
1215 1317 5.426504 TGATGCTTTTGTTGTTTTCCATGT 58.573 33.333 0.00 0.00 0.00 3.21
1223 1325 7.397892 TTTGTTGTTTTCCATGTGTAGAAGA 57.602 32.000 0.00 0.00 0.00 2.87
1324 1426 4.322385 GTCACCCCGCGCAACAAC 62.322 66.667 8.75 0.00 0.00 3.32
1390 1492 3.058160 GAAGCGGTGGTGCAGCAT 61.058 61.111 23.18 5.07 40.81 3.79
1411 1513 9.455250 CAGCATGAAGTGAACCATGATTTGGAT 62.455 40.741 0.00 0.00 44.48 3.41
1425 1527 3.423539 TTTGGATAAGCAGAGCACTGT 57.576 42.857 12.89 0.00 45.04 3.55
1528 1630 5.132816 AGGCTACCTGGTAATGCTTATCTTT 59.867 40.000 15.22 0.00 29.57 2.52
1529 1631 5.239525 GGCTACCTGGTAATGCTTATCTTTG 59.760 44.000 15.22 0.00 0.00 2.77
1544 1646 7.652909 TGCTTATCTTTGTGTTGAAATTCCTTG 59.347 33.333 0.00 0.00 0.00 3.61
1547 1649 6.279513 TCTTTGTGTTGAAATTCCTTGTGT 57.720 33.333 0.00 0.00 0.00 3.72
1548 1650 6.098679 TCTTTGTGTTGAAATTCCTTGTGTG 58.901 36.000 0.00 0.00 0.00 3.82
1549 1651 5.398603 TTGTGTTGAAATTCCTTGTGTGT 57.601 34.783 0.00 0.00 0.00 3.72
1550 1652 6.516739 TTGTGTTGAAATTCCTTGTGTGTA 57.483 33.333 0.00 0.00 0.00 2.90
1551 1653 6.707440 TGTGTTGAAATTCCTTGTGTGTAT 57.293 33.333 0.00 0.00 0.00 2.29
1552 1654 7.809546 TGTGTTGAAATTCCTTGTGTGTATA 57.190 32.000 0.00 0.00 0.00 1.47
1553 1655 8.402798 TGTGTTGAAATTCCTTGTGTGTATAT 57.597 30.769 0.00 0.00 0.00 0.86
1554 1656 8.511321 TGTGTTGAAATTCCTTGTGTGTATATC 58.489 33.333 0.00 0.00 0.00 1.63
1603 1706 6.403866 AATTATTGTGCACACCTTTCTGAA 57.596 33.333 21.56 0.98 0.00 3.02
1659 1772 6.957631 TGGATTACTCCATACACATTTCACT 58.042 36.000 0.00 0.00 46.95 3.41
1669 1782 8.539544 TCCATACACATTTCACTCTCTTAATGA 58.460 33.333 0.00 0.00 33.39 2.57
1684 1822 8.839310 TCTCTTAATGATCTTATTAAGCTGCC 57.161 34.615 15.76 0.00 44.53 4.85
1741 1879 5.751028 TGTTTTGCTTTACAACCATGCTAAC 59.249 36.000 0.00 0.00 38.23 2.34
2035 2173 0.961753 TCGTGAGAGCACATGAGTGT 59.038 50.000 0.00 0.00 45.41 3.55
2092 2230 6.905578 TCGAATATGGATGCTCATGATTTTG 58.094 36.000 0.00 0.00 0.00 2.44
2100 2238 8.523915 TGGATGCTCATGATTTTGTTAGTATT 57.476 30.769 0.00 0.00 0.00 1.89
2119 2257 4.900635 ATTTGTTATGTCGAGGAATGCC 57.099 40.909 0.00 0.00 0.00 4.40
2367 2506 7.437713 TGGGTATCTTTGATAGTTGAGTGAT 57.562 36.000 0.00 0.00 0.00 3.06
2449 2589 6.303839 TGGACTAAGGACTTTGTTATGCTTT 58.696 36.000 1.02 0.00 0.00 3.51
2470 2612 1.403814 TTTGTTGTTGCCGGGATCAA 58.596 45.000 14.71 14.71 0.00 2.57
2471 2613 1.626686 TTGTTGTTGCCGGGATCAAT 58.373 45.000 20.51 0.00 0.00 2.57
2613 2756 0.178924 AATGCCTGCCCTTCTGGTTT 60.179 50.000 0.00 0.00 36.29 3.27
2618 2761 2.437413 CCTGCCCTTCTGGTTTAGTTC 58.563 52.381 0.00 0.00 36.04 3.01
2638 2781 6.721321 AGTTCAACCAAACAATAACACTACG 58.279 36.000 0.00 0.00 0.00 3.51
2784 2928 7.546778 ACCAAATTTGTAAACACACAATTCC 57.453 32.000 16.73 0.00 38.18 3.01
2827 2971 4.657814 ATTCTTGCCTTTTCTCAGGGTA 57.342 40.909 0.00 0.00 34.01 3.69
2852 2996 0.841961 CCAGATGCATGGAGGGAGAA 59.158 55.000 2.46 0.00 43.57 2.87
2991 3135 4.104776 CGTTCATTGACCAAATACATGCC 58.895 43.478 0.00 0.00 0.00 4.40
3011 3155 3.056607 GCCATCCTCTCATCTAGCTCTTC 60.057 52.174 0.00 0.00 0.00 2.87
3488 3632 4.353777 AGGTATCTAGTCCTGCAACTGAA 58.646 43.478 1.14 0.00 32.29 3.02
3514 3658 2.240667 CTGACCACCCAGAGATCCAATT 59.759 50.000 0.00 0.00 36.29 2.32
3587 3731 5.045359 TCAAGAACCTCACCATGATGATCTT 60.045 40.000 0.00 0.00 35.63 2.40
3588 3732 5.033589 AGAACCTCACCATGATGATCTTC 57.966 43.478 0.00 1.67 0.00 2.87
3664 3808 5.178797 AGTTACTCCATATGCAGTCACAAC 58.821 41.667 12.52 8.00 0.00 3.32
3702 3846 1.500512 GCCGACCGTTGTTGCTACAA 61.501 55.000 9.74 9.74 41.82 2.41
3719 3863 3.146104 ACAACAGCTGAAGTTATGCCT 57.854 42.857 23.35 0.00 0.00 4.75
3863 4007 2.548920 GCCAGAATATCCAGAGAACGGG 60.549 54.545 0.00 0.00 0.00 5.28
3878 4022 1.137697 ACGGGTCCAAAAACTCTCCT 58.862 50.000 0.00 0.00 0.00 3.69
3914 4058 2.404265 TGTCTGCAACAAAATCTGCG 57.596 45.000 0.00 0.00 41.63 5.18
4004 4148 1.609783 CCGCCATTCCCTTCCTTCT 59.390 57.895 0.00 0.00 0.00 2.85
4085 4229 1.143073 ACCAAAGAGGGAGCGAAAGTT 59.857 47.619 0.00 0.00 43.89 2.66
4103 4247 3.579709 AGTTGACAAGTCTATGCTGTCG 58.420 45.455 1.53 0.00 32.68 4.35
4146 4290 9.828852 GTAAGTAGTAGAGGATCATTGAATACG 57.171 37.037 0.00 0.00 37.82 3.06
4156 4300 5.845953 GGATCATTGAATACGCATGTTTACG 59.154 40.000 0.00 0.00 0.00 3.18
4157 4301 4.583426 TCATTGAATACGCATGTTTACGC 58.417 39.130 0.00 0.00 0.00 4.42
4176 4489 3.927142 ACGCTAGTAAGACTGTTTGATGC 59.073 43.478 0.00 0.00 0.00 3.91
4194 4507 5.809001 TGATGCCTTGTCAGACTTTCTTAT 58.191 37.500 1.31 0.00 0.00 1.73
4263 4576 7.954788 TGTAATTGAAAATTAGGTTGTTGGC 57.045 32.000 0.00 0.00 0.00 4.52
4321 4641 8.934825 TCCATCTTTGTTTGCTATAAAAATTGC 58.065 29.630 0.00 0.00 0.00 3.56
4324 4644 8.581057 TCTTTGTTTGCTATAAAAATTGCGAA 57.419 26.923 0.00 0.00 0.00 4.70
4340 4660 1.000274 GCGAAAAACTGTTCCATGCCT 60.000 47.619 0.00 0.00 0.00 4.75
4346 4666 3.788227 AACTGTTCCATGCCTCAACTA 57.212 42.857 0.00 0.00 0.00 2.24
4470 4790 2.769095 ACTGAGCTGTTCCCTAAGATCC 59.231 50.000 0.00 0.00 0.00 3.36
4471 4791 2.768527 CTGAGCTGTTCCCTAAGATCCA 59.231 50.000 0.00 0.00 0.00 3.41
4473 4793 3.135348 TGAGCTGTTCCCTAAGATCCATG 59.865 47.826 0.00 0.00 0.00 3.66
4474 4794 3.387962 AGCTGTTCCCTAAGATCCATGA 58.612 45.455 0.00 0.00 0.00 3.07
4475 4795 3.782523 AGCTGTTCCCTAAGATCCATGAA 59.217 43.478 0.00 0.00 0.00 2.57
4476 4796 4.414846 AGCTGTTCCCTAAGATCCATGAAT 59.585 41.667 0.00 0.00 0.00 2.57
4477 4797 5.608437 AGCTGTTCCCTAAGATCCATGAATA 59.392 40.000 0.00 0.00 0.00 1.75
4478 4798 6.101734 AGCTGTTCCCTAAGATCCATGAATAA 59.898 38.462 0.00 0.00 0.00 1.40
4483 4836 6.479006 TCCCTAAGATCCATGAATAAGCATG 58.521 40.000 0.00 0.00 44.05 4.06
4501 4854 4.222145 AGCATGTGAGCCAATTTTCTGAAT 59.778 37.500 0.00 0.00 34.23 2.57
4506 4859 2.755103 GAGCCAATTTTCTGAATCGGGT 59.245 45.455 0.00 0.00 0.00 5.28
4507 4860 2.755103 AGCCAATTTTCTGAATCGGGTC 59.245 45.455 0.00 0.00 0.00 4.46
4508 4861 2.755103 GCCAATTTTCTGAATCGGGTCT 59.245 45.455 0.00 0.00 0.00 3.85
4515 4868 3.095912 TCTGAATCGGGTCTAGGTTCA 57.904 47.619 0.00 0.00 0.00 3.18
4519 4872 3.055385 TGAATCGGGTCTAGGTTCAAAGG 60.055 47.826 0.00 0.00 0.00 3.11
4529 4882 6.261158 GGTCTAGGTTCAAAGGAATAAGCATC 59.739 42.308 0.00 0.00 35.05 3.91
4563 4916 9.843334 ATTTATTTTTGTGCTGCATTTAAATGG 57.157 25.926 25.61 13.52 36.90 3.16
4564 4917 4.745837 TTTTGTGCTGCATTTAAATGGC 57.254 36.364 25.61 21.29 36.90 4.40
4565 4918 3.397849 TTGTGCTGCATTTAAATGGCA 57.602 38.095 25.61 23.20 36.90 4.92
4566 4919 2.686235 TGTGCTGCATTTAAATGGCAC 58.314 42.857 33.21 33.21 46.03 5.01
4567 4920 2.299582 TGTGCTGCATTTAAATGGCACT 59.700 40.909 35.81 7.32 46.02 4.40
4568 4921 2.669434 GTGCTGCATTTAAATGGCACTG 59.331 45.455 32.90 21.13 44.25 3.66
4569 4922 1.662122 GCTGCATTTAAATGGCACTGC 59.338 47.619 25.61 19.73 36.90 4.40
4670 5032 1.134848 GCAGAGAGACCGATGAAAGCT 60.135 52.381 0.00 0.00 0.00 3.74
4701 5063 0.895530 GTGAAGACGTGGATCCTCCA 59.104 55.000 14.23 0.00 45.98 3.86
4713 5075 2.889678 GGATCCTCCATTCCATTTGAGC 59.110 50.000 3.84 0.00 36.28 4.26
4987 5349 2.729360 CGTGCGTTGTTAAGTGAGATCA 59.271 45.455 0.00 0.00 0.00 2.92
5021 5384 3.634448 AGATGCTGATGTTAGCGAGTACT 59.366 43.478 0.00 0.00 46.61 2.73
5045 5431 2.897326 GGCTGTTTGGTTGGTTTATCCT 59.103 45.455 0.00 0.00 37.07 3.24
5228 5643 0.407528 TGAGGGAGAGCAGAGTGTCT 59.592 55.000 0.00 0.00 0.00 3.41
5234 5649 2.495669 GGAGAGCAGAGTGTCTAGCTTT 59.504 50.000 0.00 0.00 33.33 3.51
5277 5693 3.648067 TCTGCAGCTTAGCCCTATTATGT 59.352 43.478 9.47 0.00 0.00 2.29
5280 5696 4.137543 GCAGCTTAGCCCTATTATGTTGT 58.862 43.478 0.00 0.00 0.00 3.32
5337 5754 3.926821 AAAATCACCGCCGTAAAATGT 57.073 38.095 0.00 0.00 0.00 2.71
5350 5767 4.094442 CCGTAAAATGTCCCAGTTTAGCTC 59.906 45.833 0.00 0.00 35.19 4.09
5367 5784 1.347817 CTCGAGCAACTCCAACGCTC 61.348 60.000 0.00 0.00 46.91 5.03
5368 5785 3.567473 GAGCAACTCCAACGCTCC 58.433 61.111 0.00 0.00 45.14 4.70
5369 5786 2.357517 AGCAACTCCAACGCTCCG 60.358 61.111 0.00 0.00 0.00 4.63
5370 5787 2.357034 GCAACTCCAACGCTCCGA 60.357 61.111 0.00 0.00 0.00 4.55
5371 5788 2.668280 GCAACTCCAACGCTCCGAC 61.668 63.158 0.00 0.00 0.00 4.79
5372 5789 2.027625 CAACTCCAACGCTCCGACC 61.028 63.158 0.00 0.00 0.00 4.79
5373 5790 2.207924 AACTCCAACGCTCCGACCT 61.208 57.895 0.00 0.00 0.00 3.85
5374 5791 2.125912 CTCCAACGCTCCGACCTG 60.126 66.667 0.00 0.00 0.00 4.00
5375 5792 2.915659 TCCAACGCTCCGACCTGT 60.916 61.111 0.00 0.00 0.00 4.00
5376 5793 2.432628 CCAACGCTCCGACCTGTC 60.433 66.667 0.00 0.00 0.00 3.51
5377 5794 2.432628 CAACGCTCCGACCTGTCC 60.433 66.667 0.00 0.00 0.00 4.02
5378 5795 4.052229 AACGCTCCGACCTGTCCG 62.052 66.667 0.00 0.00 0.00 4.79
5380 5797 4.778415 CGCTCCGACCTGTCCGTG 62.778 72.222 0.00 0.00 0.00 4.94
5382 5799 3.680786 CTCCGACCTGTCCGTGCA 61.681 66.667 0.00 0.00 0.00 4.57
5383 5800 3.633094 CTCCGACCTGTCCGTGCAG 62.633 68.421 0.00 0.00 36.31 4.41
5384 5801 3.991051 CCGACCTGTCCGTGCAGT 61.991 66.667 0.00 0.00 34.84 4.40
5385 5802 2.430921 CGACCTGTCCGTGCAGTC 60.431 66.667 0.00 0.00 34.84 3.51
5386 5803 2.734591 GACCTGTCCGTGCAGTCA 59.265 61.111 0.00 0.00 34.84 3.41
5387 5804 1.069090 GACCTGTCCGTGCAGTCAA 59.931 57.895 0.00 0.00 34.84 3.18
5388 5805 0.531974 GACCTGTCCGTGCAGTCAAA 60.532 55.000 0.00 0.00 34.84 2.69
5389 5806 0.107410 ACCTGTCCGTGCAGTCAAAA 60.107 50.000 0.00 0.00 34.84 2.44
5390 5807 1.021202 CCTGTCCGTGCAGTCAAAAA 58.979 50.000 0.00 0.00 34.84 1.94
5413 5830 4.481195 GCTCAAAGCACAGACCCA 57.519 55.556 0.00 0.00 41.89 4.51
5414 5831 2.952714 GCTCAAAGCACAGACCCAT 58.047 52.632 0.00 0.00 41.89 4.00
5415 5832 1.251251 GCTCAAAGCACAGACCCATT 58.749 50.000 0.00 0.00 41.89 3.16
5416 5833 1.200948 GCTCAAAGCACAGACCCATTC 59.799 52.381 0.00 0.00 41.89 2.67
5417 5834 2.787994 CTCAAAGCACAGACCCATTCT 58.212 47.619 0.00 0.00 33.33 2.40
5418 5835 2.746362 CTCAAAGCACAGACCCATTCTC 59.254 50.000 0.00 0.00 28.96 2.87
5419 5836 2.106338 TCAAAGCACAGACCCATTCTCA 59.894 45.455 0.00 0.00 28.96 3.27
5420 5837 3.087031 CAAAGCACAGACCCATTCTCAT 58.913 45.455 0.00 0.00 28.96 2.90
5421 5838 3.446442 AAGCACAGACCCATTCTCATT 57.554 42.857 0.00 0.00 28.96 2.57
5422 5839 3.446442 AGCACAGACCCATTCTCATTT 57.554 42.857 0.00 0.00 28.96 2.32
5423 5840 3.771216 AGCACAGACCCATTCTCATTTT 58.229 40.909 0.00 0.00 28.96 1.82
5424 5841 4.154942 AGCACAGACCCATTCTCATTTTT 58.845 39.130 0.00 0.00 28.96 1.94
5425 5842 4.021719 AGCACAGACCCATTCTCATTTTTG 60.022 41.667 0.00 0.00 28.96 2.44
5426 5843 4.262164 GCACAGACCCATTCTCATTTTTGT 60.262 41.667 0.00 0.00 28.96 2.83
5427 5844 5.464168 CACAGACCCATTCTCATTTTTGTC 58.536 41.667 0.00 0.00 28.96 3.18
5428 5845 4.524328 ACAGACCCATTCTCATTTTTGTCC 59.476 41.667 0.00 0.00 28.96 4.02
5429 5846 4.523943 CAGACCCATTCTCATTTTTGTCCA 59.476 41.667 0.00 0.00 28.96 4.02
5430 5847 5.186409 CAGACCCATTCTCATTTTTGTCCAT 59.814 40.000 0.00 0.00 28.96 3.41
5431 5848 5.781818 AGACCCATTCTCATTTTTGTCCATT 59.218 36.000 0.00 0.00 0.00 3.16
5432 5849 6.270695 AGACCCATTCTCATTTTTGTCCATTT 59.729 34.615 0.00 0.00 0.00 2.32
5433 5850 6.840527 ACCCATTCTCATTTTTGTCCATTTT 58.159 32.000 0.00 0.00 0.00 1.82
5434 5851 6.711645 ACCCATTCTCATTTTTGTCCATTTTG 59.288 34.615 0.00 0.00 0.00 2.44
5435 5852 6.711645 CCCATTCTCATTTTTGTCCATTTTGT 59.288 34.615 0.00 0.00 0.00 2.83
5436 5853 7.095102 CCCATTCTCATTTTTGTCCATTTTGTC 60.095 37.037 0.00 0.00 0.00 3.18
5437 5854 7.095102 CCATTCTCATTTTTGTCCATTTTGTCC 60.095 37.037 0.00 0.00 0.00 4.02
5438 5855 5.527951 TCTCATTTTTGTCCATTTTGTCCG 58.472 37.500 0.00 0.00 0.00 4.79
5439 5856 4.054671 TCATTTTTGTCCATTTTGTCCGC 58.945 39.130 0.00 0.00 0.00 5.54
5440 5857 3.810310 TTTTTGTCCATTTTGTCCGCT 57.190 38.095 0.00 0.00 0.00 5.52
5441 5858 3.363341 TTTTGTCCATTTTGTCCGCTC 57.637 42.857 0.00 0.00 0.00 5.03
5442 5859 0.871722 TTGTCCATTTTGTCCGCTCG 59.128 50.000 0.00 0.00 0.00 5.03
5443 5860 0.953471 TGTCCATTTTGTCCGCTCGG 60.953 55.000 1.14 1.14 0.00 4.63
5444 5861 0.672401 GTCCATTTTGTCCGCTCGGA 60.672 55.000 6.95 6.95 42.90 4.55
5453 5870 3.927555 TCCGCTCGGACTCATTTTT 57.072 47.368 6.95 0.00 39.76 1.94
5454 5871 1.438651 TCCGCTCGGACTCATTTTTG 58.561 50.000 6.95 0.00 39.76 2.44
5455 5872 1.001520 TCCGCTCGGACTCATTTTTGA 59.998 47.619 6.95 0.00 39.76 2.69
5456 5873 1.128692 CCGCTCGGACTCATTTTTGAC 59.871 52.381 1.35 0.00 37.50 3.18
5457 5874 1.201812 CGCTCGGACTCATTTTTGACG 60.202 52.381 0.00 0.00 0.00 4.35
5458 5875 1.464189 GCTCGGACTCATTTTTGACGC 60.464 52.381 0.00 0.00 0.00 5.19
5459 5876 1.798223 CTCGGACTCATTTTTGACGCA 59.202 47.619 0.00 0.00 0.00 5.24
5460 5877 2.214347 TCGGACTCATTTTTGACGCAA 58.786 42.857 0.00 0.00 0.00 4.85
5461 5878 2.614520 TCGGACTCATTTTTGACGCAAA 59.385 40.909 1.63 1.63 0.00 3.68
5462 5879 3.252215 TCGGACTCATTTTTGACGCAAAT 59.748 39.130 5.97 0.00 33.19 2.32
5463 5880 3.361644 CGGACTCATTTTTGACGCAAATG 59.638 43.478 5.97 5.14 41.26 2.32
5464 5881 4.298332 GGACTCATTTTTGACGCAAATGT 58.702 39.130 5.97 2.40 40.88 2.71
5465 5882 4.148696 GGACTCATTTTTGACGCAAATGTG 59.851 41.667 5.97 6.64 40.88 3.21
5466 5883 4.050553 ACTCATTTTTGACGCAAATGTGG 58.949 39.130 11.07 6.88 40.88 4.17
5467 5884 3.388308 TCATTTTTGACGCAAATGTGGG 58.612 40.909 0.00 0.00 40.88 4.61
5474 5891 1.586028 CGCAAATGTGGGTTGGAGG 59.414 57.895 0.00 0.00 33.13 4.30
5475 5892 1.178534 CGCAAATGTGGGTTGGAGGT 61.179 55.000 0.00 0.00 33.13 3.85
5476 5893 0.318120 GCAAATGTGGGTTGGAGGTG 59.682 55.000 0.00 0.00 0.00 4.00
5477 5894 0.968405 CAAATGTGGGTTGGAGGTGG 59.032 55.000 0.00 0.00 0.00 4.61
5478 5895 0.856982 AAATGTGGGTTGGAGGTGGA 59.143 50.000 0.00 0.00 0.00 4.02
5479 5896 0.112412 AATGTGGGTTGGAGGTGGAC 59.888 55.000 0.00 0.00 0.00 4.02
5480 5897 1.065410 ATGTGGGTTGGAGGTGGACA 61.065 55.000 0.00 0.00 0.00 4.02
5481 5898 1.228154 GTGGGTTGGAGGTGGACAC 60.228 63.158 0.00 0.00 0.00 3.67
5482 5899 1.694525 TGGGTTGGAGGTGGACACA 60.695 57.895 4.69 0.00 0.00 3.72
5483 5900 1.282653 TGGGTTGGAGGTGGACACAA 61.283 55.000 4.69 0.00 0.00 3.33
5484 5901 0.106419 GGGTTGGAGGTGGACACAAA 60.106 55.000 4.69 0.00 0.00 2.83
5485 5902 1.318576 GGTTGGAGGTGGACACAAAG 58.681 55.000 4.69 0.00 0.00 2.77
5486 5903 0.668535 GTTGGAGGTGGACACAAAGC 59.331 55.000 4.69 0.00 0.00 3.51
5487 5904 0.817634 TTGGAGGTGGACACAAAGCG 60.818 55.000 4.69 0.00 0.00 4.68
5488 5905 1.966451 GGAGGTGGACACAAAGCGG 60.966 63.158 4.69 0.00 0.00 5.52
5489 5906 1.070786 GAGGTGGACACAAAGCGGA 59.929 57.895 4.69 0.00 0.00 5.54
5490 5907 1.227853 AGGTGGACACAAAGCGGAC 60.228 57.895 4.69 0.00 0.00 4.79
5491 5908 2.604174 GGTGGACACAAAGCGGACG 61.604 63.158 4.69 0.00 0.00 4.79
5492 5909 1.885850 GTGGACACAAAGCGGACGT 60.886 57.895 0.00 0.00 0.00 4.34
5493 5910 1.593209 TGGACACAAAGCGGACGTC 60.593 57.895 7.13 7.13 0.00 4.34
5494 5911 1.300697 GGACACAAAGCGGACGTCT 60.301 57.895 16.46 0.00 0.00 4.18
5495 5912 0.878961 GGACACAAAGCGGACGTCTT 60.879 55.000 16.46 0.00 0.00 3.01
5496 5913 0.935196 GACACAAAGCGGACGTCTTT 59.065 50.000 16.46 5.45 34.37 2.52
5497 5914 1.329599 GACACAAAGCGGACGTCTTTT 59.670 47.619 16.46 10.89 31.94 2.27
5498 5915 1.063469 ACACAAAGCGGACGTCTTTTG 59.937 47.619 25.04 25.04 31.94 2.44
5499 5916 1.063469 CACAAAGCGGACGTCTTTTGT 59.937 47.619 25.90 25.90 31.94 2.83
5500 5917 1.063469 ACAAAGCGGACGTCTTTTGTG 59.937 47.619 28.38 19.26 31.94 3.33
5501 5918 1.063469 CAAAGCGGACGTCTTTTGTGT 59.937 47.619 16.46 0.00 31.94 3.72
5502 5919 0.935196 AAGCGGACGTCTTTTGTGTC 59.065 50.000 16.46 0.00 0.00 3.67
5503 5920 0.878961 AGCGGACGTCTTTTGTGTCC 60.879 55.000 16.46 0.55 46.91 4.02
5506 5923 2.528041 GGACGTCTTTTGTGTCCTCT 57.472 50.000 16.46 0.00 46.86 3.69
5507 5924 2.835027 GGACGTCTTTTGTGTCCTCTT 58.165 47.619 16.46 0.00 46.86 2.85
5508 5925 2.801111 GGACGTCTTTTGTGTCCTCTTC 59.199 50.000 16.46 0.00 46.86 2.87
5509 5926 2.470821 ACGTCTTTTGTGTCCTCTTCG 58.529 47.619 0.00 0.00 0.00 3.79
5510 5927 2.159142 ACGTCTTTTGTGTCCTCTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
5511 5928 2.471743 CGTCTTTTGTGTCCTCTTCGTC 59.528 50.000 0.00 0.00 0.00 4.20
5512 5929 2.801111 GTCTTTTGTGTCCTCTTCGTCC 59.199 50.000 0.00 0.00 0.00 4.79
5513 5930 2.143925 CTTTTGTGTCCTCTTCGTCCC 58.856 52.381 0.00 0.00 0.00 4.46
5514 5931 1.420430 TTTGTGTCCTCTTCGTCCCT 58.580 50.000 0.00 0.00 0.00 4.20
5515 5932 0.679505 TTGTGTCCTCTTCGTCCCTG 59.320 55.000 0.00 0.00 0.00 4.45
5516 5933 1.079750 GTGTCCTCTTCGTCCCTGC 60.080 63.158 0.00 0.00 0.00 4.85
5517 5934 1.228894 TGTCCTCTTCGTCCCTGCT 60.229 57.895 0.00 0.00 0.00 4.24
5518 5935 1.216710 GTCCTCTTCGTCCCTGCTG 59.783 63.158 0.00 0.00 0.00 4.41
5519 5936 1.984570 TCCTCTTCGTCCCTGCTGG 60.985 63.158 1.89 1.89 0.00 4.85
5520 5937 2.286523 CCTCTTCGTCCCTGCTGGT 61.287 63.158 9.00 0.00 34.77 4.00
5521 5938 1.079543 CTCTTCGTCCCTGCTGGTG 60.080 63.158 9.00 0.50 34.77 4.17
5522 5939 2.743928 CTTCGTCCCTGCTGGTGC 60.744 66.667 9.00 0.03 40.20 5.01
5523 5940 3.241530 TTCGTCCCTGCTGGTGCT 61.242 61.111 9.00 0.00 40.48 4.40
5524 5941 3.240134 TTCGTCCCTGCTGGTGCTC 62.240 63.158 9.00 0.00 40.48 4.26
5547 5964 3.064324 GCACAAGCGCCCATCCTT 61.064 61.111 2.29 0.00 0.00 3.36
5548 5965 2.879907 CACAAGCGCCCATCCTTG 59.120 61.111 2.29 3.07 43.05 3.61
5549 5966 3.064324 ACAAGCGCCCATCCTTGC 61.064 61.111 2.29 0.00 41.56 4.01
5550 5967 3.830192 CAAGCGCCCATCCTTGCC 61.830 66.667 2.29 0.00 32.94 4.52
5562 5979 4.404654 CTTGCCGGCGCCAGTTTC 62.405 66.667 28.98 10.27 0.00 2.78
5570 5987 3.864686 CGCCAGTTTCCGCCGATG 61.865 66.667 0.00 0.00 0.00 3.84
5571 5988 4.179579 GCCAGTTTCCGCCGATGC 62.180 66.667 0.00 0.00 0.00 3.91
5572 5989 2.436646 CCAGTTTCCGCCGATGCT 60.437 61.111 0.00 0.00 34.43 3.79
5573 5990 2.464459 CCAGTTTCCGCCGATGCTC 61.464 63.158 0.00 0.00 34.43 4.26
5574 5991 2.509336 AGTTTCCGCCGATGCTCG 60.509 61.111 0.00 0.00 40.07 5.03
5575 5992 2.813908 GTTTCCGCCGATGCTCGT 60.814 61.111 5.15 0.00 38.40 4.18
5576 5993 1.517694 GTTTCCGCCGATGCTCGTA 60.518 57.895 5.15 0.00 38.40 3.43
5577 5994 1.517694 TTTCCGCCGATGCTCGTAC 60.518 57.895 5.15 0.00 38.40 3.67
5578 5995 2.894240 TTTCCGCCGATGCTCGTACC 62.894 60.000 5.15 0.00 38.40 3.34
5579 5996 4.944372 CCGCCGATGCTCGTACCC 62.944 72.222 5.15 0.00 38.40 3.69
5580 5997 4.201679 CGCCGATGCTCGTACCCA 62.202 66.667 5.15 0.00 38.40 4.51
5581 5998 2.585247 GCCGATGCTCGTACCCAC 60.585 66.667 5.15 0.00 38.40 4.61
5582 5999 2.889617 CCGATGCTCGTACCCACA 59.110 61.111 5.15 0.00 38.40 4.17
5583 6000 1.518572 CCGATGCTCGTACCCACAC 60.519 63.158 5.15 0.00 38.40 3.82
5584 6001 1.872234 CGATGCTCGTACCCACACG 60.872 63.158 0.00 0.00 43.28 4.49
5585 6002 2.125673 ATGCTCGTACCCACACGC 60.126 61.111 0.00 0.00 41.67 5.34
5586 6003 3.982372 ATGCTCGTACCCACACGCG 62.982 63.158 3.53 3.53 41.67 6.01
5611 6028 4.400251 ACCCTGCCGGTAGCCTCT 62.400 66.667 15.00 0.00 45.97 3.69
5612 6029 3.083997 CCCTGCCGGTAGCCTCTT 61.084 66.667 15.00 0.00 42.71 2.85
5613 6030 2.187946 CCTGCCGGTAGCCTCTTG 59.812 66.667 15.00 0.00 42.71 3.02
5614 6031 2.660064 CCTGCCGGTAGCCTCTTGT 61.660 63.158 15.00 0.00 42.71 3.16
5615 6032 1.296715 CTGCCGGTAGCCTCTTGTT 59.703 57.895 6.62 0.00 42.71 2.83
5616 6033 0.321653 CTGCCGGTAGCCTCTTGTTT 60.322 55.000 6.62 0.00 42.71 2.83
5617 6034 0.109723 TGCCGGTAGCCTCTTGTTTT 59.890 50.000 1.90 0.00 42.71 2.43
5618 6035 1.244816 GCCGGTAGCCTCTTGTTTTT 58.755 50.000 1.90 0.00 34.35 1.94
5619 6036 1.199327 GCCGGTAGCCTCTTGTTTTTC 59.801 52.381 1.90 0.00 34.35 2.29
5620 6037 2.779506 CCGGTAGCCTCTTGTTTTTCT 58.220 47.619 0.00 0.00 0.00 2.52
5621 6038 3.146847 CCGGTAGCCTCTTGTTTTTCTT 58.853 45.455 0.00 0.00 0.00 2.52
5622 6039 3.568430 CCGGTAGCCTCTTGTTTTTCTTT 59.432 43.478 0.00 0.00 0.00 2.52
5623 6040 4.320275 CCGGTAGCCTCTTGTTTTTCTTTC 60.320 45.833 0.00 0.00 0.00 2.62
5624 6041 4.274950 CGGTAGCCTCTTGTTTTTCTTTCA 59.725 41.667 0.00 0.00 0.00 2.69
5625 6042 5.048713 CGGTAGCCTCTTGTTTTTCTTTCAT 60.049 40.000 0.00 0.00 0.00 2.57
5626 6043 6.148811 CGGTAGCCTCTTGTTTTTCTTTCATA 59.851 38.462 0.00 0.00 0.00 2.15
5627 6044 7.308348 CGGTAGCCTCTTGTTTTTCTTTCATAA 60.308 37.037 0.00 0.00 0.00 1.90
5628 6045 8.523658 GGTAGCCTCTTGTTTTTCTTTCATAAT 58.476 33.333 0.00 0.00 0.00 1.28
5646 6063 9.868277 TTTCATAATAAAATGAAATGTCCGCTT 57.132 25.926 7.69 0.00 46.04 4.68
5647 6064 9.515020 TTCATAATAAAATGAAATGTCCGCTTC 57.485 29.630 0.00 0.00 41.67 3.86
5648 6065 8.681806 TCATAATAAAATGAAATGTCCGCTTCA 58.318 29.630 0.00 0.00 36.08 3.02
5649 6066 9.299963 CATAATAAAATGAAATGTCCGCTTCAA 57.700 29.630 0.00 0.00 35.31 2.69
5650 6067 9.868277 ATAATAAAATGAAATGTCCGCTTCAAA 57.132 25.926 0.00 0.00 35.31 2.69
5651 6068 8.776376 AATAAAATGAAATGTCCGCTTCAAAT 57.224 26.923 0.00 0.00 35.31 2.32
5652 6069 6.470557 AAAATGAAATGTCCGCTTCAAATG 57.529 33.333 0.00 0.00 35.31 2.32
5653 6070 3.574284 TGAAATGTCCGCTTCAAATGG 57.426 42.857 0.00 0.00 0.00 3.16
5654 6071 2.230992 TGAAATGTCCGCTTCAAATGGG 59.769 45.455 0.00 0.00 0.00 4.00
5655 6072 1.923356 AATGTCCGCTTCAAATGGGT 58.077 45.000 0.00 0.00 0.00 4.51
5656 6073 1.463674 ATGTCCGCTTCAAATGGGTC 58.536 50.000 0.00 0.00 0.00 4.46
5657 6074 0.953471 TGTCCGCTTCAAATGGGTCG 60.953 55.000 0.00 0.00 0.00 4.79
5658 6075 2.038269 TCCGCTTCAAATGGGTCGC 61.038 57.895 0.00 0.00 0.00 5.19
5659 6076 2.040544 CCGCTTCAAATGGGTCGCT 61.041 57.895 0.00 0.00 0.00 4.93
5660 6077 1.586154 CCGCTTCAAATGGGTCGCTT 61.586 55.000 0.00 0.00 0.00 4.68
5661 6078 0.454957 CGCTTCAAATGGGTCGCTTG 60.455 55.000 0.00 0.00 0.00 4.01
5662 6079 0.881118 GCTTCAAATGGGTCGCTTGA 59.119 50.000 0.00 0.00 0.00 3.02
5663 6080 1.135575 GCTTCAAATGGGTCGCTTGAG 60.136 52.381 0.00 0.00 31.11 3.02
5664 6081 2.154462 CTTCAAATGGGTCGCTTGAGT 58.846 47.619 0.00 0.00 31.11 3.41
5665 6082 2.270352 TCAAATGGGTCGCTTGAGTT 57.730 45.000 0.00 0.00 0.00 3.01
5666 6083 1.879380 TCAAATGGGTCGCTTGAGTTG 59.121 47.619 0.00 0.00 0.00 3.16
5667 6084 1.068333 CAAATGGGTCGCTTGAGTTGG 60.068 52.381 0.00 0.00 0.00 3.77
5668 6085 0.609131 AATGGGTCGCTTGAGTTGGG 60.609 55.000 0.00 0.00 0.00 4.12
5669 6086 1.779061 ATGGGTCGCTTGAGTTGGGT 61.779 55.000 0.00 0.00 0.00 4.51
5670 6087 1.966451 GGGTCGCTTGAGTTGGGTG 60.966 63.158 0.00 0.00 0.00 4.61
5671 6088 2.617274 GGTCGCTTGAGTTGGGTGC 61.617 63.158 0.00 0.00 0.00 5.01
5672 6089 1.891919 GTCGCTTGAGTTGGGTGCA 60.892 57.895 0.00 0.00 0.00 4.57
5673 6090 1.891919 TCGCTTGAGTTGGGTGCAC 60.892 57.895 8.80 8.80 0.00 4.57
5674 6091 2.186160 CGCTTGAGTTGGGTGCACA 61.186 57.895 20.43 0.00 0.00 4.57
5675 6092 1.723608 CGCTTGAGTTGGGTGCACAA 61.724 55.000 20.43 1.81 0.00 3.33
5676 6093 0.459489 GCTTGAGTTGGGTGCACAAA 59.541 50.000 20.43 9.71 31.17 2.83
5677 6094 1.069049 GCTTGAGTTGGGTGCACAAAT 59.931 47.619 20.43 4.21 31.17 2.32
5678 6095 2.863704 GCTTGAGTTGGGTGCACAAATC 60.864 50.000 20.43 14.24 43.52 2.17
5680 6097 2.596346 TGAGTTGGGTGCACAAATCAT 58.404 42.857 20.43 0.00 46.52 2.45
5681 6098 2.296752 TGAGTTGGGTGCACAAATCATG 59.703 45.455 20.43 0.00 46.52 3.07
5682 6099 2.297033 GAGTTGGGTGCACAAATCATGT 59.703 45.455 20.43 1.77 42.95 3.21
5683 6100 2.297033 AGTTGGGTGCACAAATCATGTC 59.703 45.455 20.43 0.00 41.46 3.06
5684 6101 1.255882 TGGGTGCACAAATCATGTCC 58.744 50.000 20.43 7.61 41.46 4.02
5685 6102 0.171007 GGGTGCACAAATCATGTCCG 59.829 55.000 20.43 0.00 41.46 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 117 2.443390 AGTGGGGTCGGGGTATCG 60.443 66.667 0.00 0.00 0.00 2.92
169 194 0.237235 GGTGAGTTTTGAATCGCGCA 59.763 50.000 8.75 0.00 0.00 6.09
289 318 1.892819 CTCATGACACGTGGGCTCCT 61.893 60.000 21.57 0.00 0.00 3.69
299 329 2.740981 CCAACAGCTTCTCTCATGACAC 59.259 50.000 0.00 0.00 0.00 3.67
307 337 2.348998 CGCCCCAACAGCTTCTCT 59.651 61.111 0.00 0.00 0.00 3.10
308 338 2.747855 CCGCCCCAACAGCTTCTC 60.748 66.667 0.00 0.00 0.00 2.87
309 339 3.570212 ACCGCCCCAACAGCTTCT 61.570 61.111 0.00 0.00 0.00 2.85
310 340 3.365265 CACCGCCCCAACAGCTTC 61.365 66.667 0.00 0.00 0.00 3.86
355 392 0.455972 GTGAGTGAGCGAGTGAGAGC 60.456 60.000 0.00 0.00 0.00 4.09
372 409 6.998258 AAAGAAAAATGAAATGCGAGAGTG 57.002 33.333 0.00 0.00 0.00 3.51
373 410 7.922811 AGAAAAAGAAAAATGAAATGCGAGAGT 59.077 29.630 0.00 0.00 0.00 3.24
390 448 4.733523 GCGACAGCAAGGAAAGAAAAAGAA 60.734 41.667 0.00 0.00 44.35 2.52
391 449 3.243068 GCGACAGCAAGGAAAGAAAAAGA 60.243 43.478 0.00 0.00 44.35 2.52
435 493 2.046604 TGGTAGCAGCAGCAGCAG 60.047 61.111 12.92 0.00 45.49 4.24
473 531 3.984186 TTCCGGGGAGAGGAGGCTG 62.984 68.421 0.00 0.00 39.22 4.85
474 532 3.028223 ATTCCGGGGAGAGGAGGCT 62.028 63.158 0.00 0.00 39.22 4.58
487 568 1.364171 CTCCTACGCCTCCATTCCG 59.636 63.158 0.00 0.00 0.00 4.30
605 690 3.631046 GATCTAGGGGGCGGCAGG 61.631 72.222 12.47 0.00 0.00 4.85
640 732 3.046087 GCTCGAAGCAGTGCAGCA 61.046 61.111 19.20 0.00 41.89 4.41
641 733 4.144681 CGCTCGAAGCAGTGCAGC 62.145 66.667 19.20 16.03 42.58 5.25
642 734 1.835483 AAACGCTCGAAGCAGTGCAG 61.835 55.000 19.20 6.86 42.58 4.41
643 735 1.436195 AAAACGCTCGAAGCAGTGCA 61.436 50.000 19.20 0.00 42.58 4.57
646 738 0.586802 GGAAAAACGCTCGAAGCAGT 59.413 50.000 7.47 4.02 42.58 4.40
749 841 4.988065 CGAGGCACGGAGAAGAAA 57.012 55.556 0.00 0.00 38.46 2.52
814 906 1.027357 AGTGAAAGCAACCACAGCAG 58.973 50.000 0.00 0.00 35.84 4.24
818 910 1.723608 CCGCAGTGAAAGCAACCACA 61.724 55.000 0.00 0.00 35.84 4.17
837 929 0.879400 CCCGAGATCATGAGCACTGC 60.879 60.000 14.38 0.00 0.00 4.40
896 988 1.393539 ACTGCAGCTAATTGTTACGCG 59.606 47.619 15.27 3.53 0.00 6.01
1098 1194 4.320608 TTCAATTTTCACCTCCAAGCAC 57.679 40.909 0.00 0.00 0.00 4.40
1100 1196 6.866010 AAAATTCAATTTTCACCTCCAAGC 57.134 33.333 1.98 0.00 37.96 4.01
1215 1317 0.606604 GTTGCTCCCGGTCTTCTACA 59.393 55.000 0.00 0.00 0.00 2.74
1223 1325 2.741878 TACCCTCTGTTGCTCCCGGT 62.742 60.000 0.00 0.00 0.00 5.28
1341 1443 0.107165 GGAATTCTCACCCTTCCCCG 60.107 60.000 5.23 0.00 33.74 5.73
1380 1482 0.953727 GTTCACTTCATGCTGCACCA 59.046 50.000 3.57 0.00 0.00 4.17
1411 1513 1.185618 ACCCGACAGTGCTCTGCTTA 61.186 55.000 15.50 0.00 44.77 3.09
1425 1527 1.591703 GACAGCACATCAGACCCGA 59.408 57.895 0.00 0.00 0.00 5.14
1528 1630 6.707440 ATACACACAAGGAATTTCAACACA 57.293 33.333 0.00 0.00 0.00 3.72
1529 1631 8.730680 AGATATACACACAAGGAATTTCAACAC 58.269 33.333 0.00 0.00 0.00 3.32
1551 1653 9.253832 TGCCCTTTTTCTGATCATTTTAAGATA 57.746 29.630 0.00 0.00 0.00 1.98
1552 1654 8.137745 TGCCCTTTTTCTGATCATTTTAAGAT 57.862 30.769 0.00 0.00 0.00 2.40
1553 1655 7.537596 TGCCCTTTTTCTGATCATTTTAAGA 57.462 32.000 0.00 0.00 0.00 2.10
1554 1656 8.606040 TTTGCCCTTTTTCTGATCATTTTAAG 57.394 30.769 0.00 0.00 0.00 1.85
1620 1725 8.281531 TGGAGTAATCCAAATGAATAGGAACAT 58.718 33.333 10.01 0.00 36.74 2.71
1637 1742 8.200792 AGAGAGTGAAATGTGTATGGAGTAATC 58.799 37.037 0.00 0.00 0.00 1.75
1641 1746 6.365970 AAGAGAGTGAAATGTGTATGGAGT 57.634 37.500 0.00 0.00 0.00 3.85
1644 1749 8.722480 TCATTAAGAGAGTGAAATGTGTATGG 57.278 34.615 0.00 0.00 32.43 2.74
1659 1772 8.432013 TGGCAGCTTAATAAGATCATTAAGAGA 58.568 33.333 21.29 4.99 45.36 3.10
1669 1782 7.466746 TTCTTTTGTGGCAGCTTAATAAGAT 57.533 32.000 3.88 0.00 0.00 2.40
1684 1822 5.349543 GGCTATGGCAAGAATTTCTTTTGTG 59.650 40.000 8.95 0.56 40.87 3.33
1741 1879 4.676196 GCCTGGACAAATGTGATGCTAAAG 60.676 45.833 0.00 0.00 0.00 1.85
2027 2165 8.322906 TGTACAGATAAAAAGGAACACTCATG 57.677 34.615 0.00 0.00 0.00 3.07
2029 2167 8.617809 GTTTGTACAGATAAAAAGGAACACTCA 58.382 33.333 0.00 0.00 0.00 3.41
2070 2208 9.622004 CTAACAAAATCATGAGCATCCATATTC 57.378 33.333 0.09 0.00 0.00 1.75
2092 2230 8.062448 GCATTCCTCGACATAACAAATACTAAC 58.938 37.037 0.00 0.00 0.00 2.34
2100 2238 3.055458 TCTGGCATTCCTCGACATAACAA 60.055 43.478 0.00 0.00 0.00 2.83
2119 2257 4.938080 AGCTTAACCGTATCTCACATCTG 58.062 43.478 0.00 0.00 0.00 2.90
2344 2483 7.500992 TCATCACTCAACTATCAAAGATACCC 58.499 38.462 0.00 0.00 0.00 3.69
2346 2485 9.755804 TCATCATCACTCAACTATCAAAGATAC 57.244 33.333 0.00 0.00 0.00 2.24
2449 2589 1.757118 TGATCCCGGCAACAACAAAAA 59.243 42.857 0.00 0.00 0.00 1.94
2454 2596 2.088423 TGTATTGATCCCGGCAACAAC 58.912 47.619 0.00 0.00 0.00 3.32
2457 2599 3.859411 TTTTGTATTGATCCCGGCAAC 57.141 42.857 0.00 0.00 0.00 4.17
2613 2756 7.710044 TCGTAGTGTTATTGTTTGGTTGAACTA 59.290 33.333 0.00 0.00 0.00 2.24
2618 2761 5.567534 GCATCGTAGTGTTATTGTTTGGTTG 59.432 40.000 0.00 0.00 0.00 3.77
2638 2781 2.927477 CACAATGCTCACAATTGGCATC 59.073 45.455 17.45 2.95 44.51 3.91
2714 2857 9.089601 TCATACATGCAAATATTTTCAGCTTTG 57.910 29.630 6.67 8.17 0.00 2.77
2718 2861 7.205297 AGGTCATACATGCAAATATTTTCAGC 58.795 34.615 6.67 4.65 0.00 4.26
2728 2871 8.532186 ACCAAATATAAGGTCATACATGCAAA 57.468 30.769 0.00 0.00 30.79 3.68
2766 2910 4.404073 AGGCAGGAATTGTGTGTTTACAAA 59.596 37.500 0.00 0.00 43.13 2.83
2774 2918 1.068333 CGGAAAGGCAGGAATTGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
2827 2971 2.092212 CCCTCCATGCATCTGGTTTAGT 60.092 50.000 6.24 0.00 37.57 2.24
2852 2996 3.308530 GCAAATGCGTTTGAAGCTAACT 58.691 40.909 30.83 0.00 46.03 2.24
2914 3058 3.218453 TGTTTTGTATATCCATGGCCCG 58.782 45.455 6.96 0.00 0.00 6.13
2915 3059 5.606348 TTTGTTTTGTATATCCATGGCCC 57.394 39.130 6.96 0.00 0.00 5.80
2959 3103 2.350772 GGTCAATGAACGAGCACAAAGG 60.351 50.000 0.00 0.00 0.00 3.11
2991 3135 4.321452 GCAGAAGAGCTAGATGAGAGGATG 60.321 50.000 0.00 0.00 0.00 3.51
3011 3155 4.470462 GTTAATTTGCAGACAGACAGCAG 58.530 43.478 0.00 0.00 41.66 4.24
3488 3632 1.847968 CTCTGGGTGGTCAGGGGTT 60.848 63.158 0.00 0.00 35.58 4.11
3514 3658 2.610374 GCAGTACGTTGTGGTTTCTCAA 59.390 45.455 0.00 0.00 0.00 3.02
3587 3731 1.073125 TCCACCTTCGCATTTTCCAGA 59.927 47.619 0.00 0.00 0.00 3.86
3588 3732 1.533625 TCCACCTTCGCATTTTCCAG 58.466 50.000 0.00 0.00 0.00 3.86
3664 3808 6.080406 GTCGGCTCATTAAGTTTTTCTTCAG 58.920 40.000 0.00 0.00 37.56 3.02
3678 3822 1.852067 GCAACAACGGTCGGCTCATT 61.852 55.000 0.00 0.00 0.00 2.57
3702 3846 2.938756 GCAGAGGCATAACTTCAGCTGT 60.939 50.000 14.67 0.00 40.72 4.40
3719 3863 5.065235 TCTTCATTGTCAATGTCTTGCAGA 58.935 37.500 22.01 12.92 39.87 4.26
3815 3959 2.035961 TGAGAACGAAGACCTCCTGTTG 59.964 50.000 0.00 0.00 0.00 3.33
3863 4007 2.291741 CACAGCAGGAGAGTTTTTGGAC 59.708 50.000 0.00 0.00 0.00 4.02
3897 4041 2.030893 CCTTCGCAGATTTTGTTGCAGA 60.031 45.455 0.00 0.00 40.28 4.26
3978 4122 4.101790 GGAATGGCGGCGTGTGTG 62.102 66.667 9.37 0.00 0.00 3.82
4004 4148 3.575506 CTGCTTACCATTGGCAGGA 57.424 52.632 1.54 0.00 46.51 3.86
4085 4229 2.556622 TGACGACAGCATAGACTTGTCA 59.443 45.455 3.49 0.00 40.88 3.58
4103 4247 0.243907 TACCAGCTGCGTCTCTTGAC 59.756 55.000 8.66 0.00 39.70 3.18
4118 4262 8.783660 ATTCAATGATCCTCTACTACTTACCA 57.216 34.615 0.00 0.00 0.00 3.25
4146 4290 4.863131 ACAGTCTTACTAGCGTAAACATGC 59.137 41.667 0.00 0.00 35.33 4.06
4156 4300 4.508662 AGGCATCAAACAGTCTTACTAGC 58.491 43.478 0.00 0.00 0.00 3.42
4157 4301 5.934625 ACAAGGCATCAAACAGTCTTACTAG 59.065 40.000 0.00 0.00 0.00 2.57
4176 4489 7.158021 ACTGAAGATAAGAAAGTCTGACAAGG 58.842 38.462 10.88 0.00 0.00 3.61
4213 4526 6.635030 AGTTACTTTGAAGTAGGCAAAAGG 57.365 37.500 4.03 0.00 42.04 3.11
4214 4527 8.807581 CAAAAGTTACTTTGAAGTAGGCAAAAG 58.192 33.333 11.35 0.00 42.04 2.27
4248 4561 4.257267 GCTTCTGCCAACAACCTAATTT 57.743 40.909 0.00 0.00 0.00 1.82
4298 4615 8.755696 TCGCAATTTTTATAGCAAACAAAGAT 57.244 26.923 0.00 0.00 0.00 2.40
4369 4689 7.432869 TCTGATTACTTTTGTGGAACCAAATG 58.567 34.615 0.00 0.00 34.50 2.32
4443 4763 0.033504 GGGAACAGCTCAGTTCGTCA 59.966 55.000 9.98 0.00 46.81 4.35
4444 4764 0.318762 AGGGAACAGCTCAGTTCGTC 59.681 55.000 9.98 6.03 46.81 4.20
4446 4766 2.231478 TCTTAGGGAACAGCTCAGTTCG 59.769 50.000 9.98 0.00 46.81 3.95
4470 4790 4.642445 TTGGCTCACATGCTTATTCATG 57.358 40.909 0.00 2.54 46.86 3.07
4471 4791 5.864418 AATTGGCTCACATGCTTATTCAT 57.136 34.783 0.00 0.00 0.00 2.57
4473 4793 6.255020 CAGAAAATTGGCTCACATGCTTATTC 59.745 38.462 0.00 0.00 0.00 1.75
4474 4794 6.071221 TCAGAAAATTGGCTCACATGCTTATT 60.071 34.615 0.00 0.00 0.00 1.40
4475 4795 5.419788 TCAGAAAATTGGCTCACATGCTTAT 59.580 36.000 0.00 0.00 0.00 1.73
4476 4796 4.766373 TCAGAAAATTGGCTCACATGCTTA 59.234 37.500 0.00 0.00 0.00 3.09
4477 4797 3.575256 TCAGAAAATTGGCTCACATGCTT 59.425 39.130 0.00 0.00 0.00 3.91
4478 4798 3.159472 TCAGAAAATTGGCTCACATGCT 58.841 40.909 0.00 0.00 0.00 3.79
4483 4836 3.428045 CCCGATTCAGAAAATTGGCTCAC 60.428 47.826 0.00 0.00 31.17 3.51
4501 4854 2.314071 TCCTTTGAACCTAGACCCGA 57.686 50.000 0.00 0.00 0.00 5.14
4506 4859 6.957631 TGATGCTTATTCCTTTGAACCTAGA 58.042 36.000 0.00 0.00 32.13 2.43
4507 4860 7.630242 TTGATGCTTATTCCTTTGAACCTAG 57.370 36.000 0.00 0.00 32.13 3.02
4508 4861 8.593945 ATTTGATGCTTATTCCTTTGAACCTA 57.406 30.769 0.00 0.00 32.13 3.08
4541 4894 5.241064 TGCCATTTAAATGCAGCACAAAAAT 59.759 32.000 21.16 0.88 35.08 1.82
4546 4899 2.686235 GTGCCATTTAAATGCAGCACA 58.314 42.857 34.00 20.49 45.58 4.57
4547 4900 2.669434 CAGTGCCATTTAAATGCAGCAC 59.331 45.455 33.05 33.05 46.11 4.40
4561 4914 1.083489 GTAGCAAATACGCAGTGCCA 58.917 50.000 10.11 0.00 45.73 4.92
4563 4916 1.999735 TCTGTAGCAAATACGCAGTGC 59.000 47.619 4.58 4.58 45.73 4.40
4564 4917 5.043903 ACTATCTGTAGCAAATACGCAGTG 58.956 41.667 0.00 0.00 45.73 3.66
4566 4919 5.050769 CCAACTATCTGTAGCAAATACGCAG 60.051 44.000 0.00 0.00 37.17 5.18
4567 4920 4.808895 CCAACTATCTGTAGCAAATACGCA 59.191 41.667 0.00 0.00 37.17 5.24
4568 4921 5.047847 TCCAACTATCTGTAGCAAATACGC 58.952 41.667 0.00 0.00 37.17 4.42
4569 4922 7.224753 ACAATCCAACTATCTGTAGCAAATACG 59.775 37.037 0.00 0.00 37.17 3.06
4670 5032 1.067846 CGTCTTCACCGTCTCCATTCA 60.068 52.381 0.00 0.00 0.00 2.57
4701 5063 0.813184 CCACGCTGCTCAAATGGAAT 59.187 50.000 0.00 0.00 31.69 3.01
4987 5349 4.020396 ACATCAGCATCTTGTCTGTCTCTT 60.020 41.667 0.00 0.00 0.00 2.85
5021 5384 1.280457 AAACCAACCAAACAGCCCAA 58.720 45.000 0.00 0.00 0.00 4.12
5045 5431 3.812609 TGTCAGCTAAGAAAACGCATCAA 59.187 39.130 0.00 0.00 0.00 2.57
5171 5586 6.233434 ACAGAAGATTTCACAGCTAATGACA 58.767 36.000 0.00 0.00 0.00 3.58
5277 5693 4.335315 GGACATGTCTGAGAAAACACACAA 59.665 41.667 24.50 0.00 0.00 3.33
5280 5696 3.136443 AGGGACATGTCTGAGAAAACACA 59.864 43.478 24.50 0.00 0.00 3.72
5337 5754 0.973632 TTGCTCGAGCTAAACTGGGA 59.026 50.000 35.27 11.55 42.66 4.37
5350 5767 3.159984 GAGCGTTGGAGTTGCTCG 58.840 61.111 0.00 0.00 44.80 5.03
5367 5784 3.916392 GACTGCACGGACAGGTCGG 62.916 68.421 11.10 5.56 42.21 4.79
5368 5785 2.430921 GACTGCACGGACAGGTCG 60.431 66.667 11.10 0.00 42.21 4.79
5369 5786 0.531974 TTTGACTGCACGGACAGGTC 60.532 55.000 11.10 7.07 42.21 3.85
5370 5787 0.107410 TTTTGACTGCACGGACAGGT 60.107 50.000 11.10 0.00 42.21 4.00
5371 5788 1.021202 TTTTTGACTGCACGGACAGG 58.979 50.000 11.10 0.00 42.21 4.00
5395 5812 5.647761 AGAATGGGTCTGTGCTTTGAGCA 62.648 47.826 0.00 0.00 41.75 4.26
5396 5813 1.200948 GAATGGGTCTGTGCTTTGAGC 59.799 52.381 0.00 0.00 42.82 4.26
5397 5814 2.746362 GAGAATGGGTCTGTGCTTTGAG 59.254 50.000 0.00 0.00 36.41 3.02
5398 5815 2.106338 TGAGAATGGGTCTGTGCTTTGA 59.894 45.455 0.00 0.00 36.41 2.69
5399 5816 2.507484 TGAGAATGGGTCTGTGCTTTG 58.493 47.619 0.00 0.00 36.41 2.77
5400 5817 2.957402 TGAGAATGGGTCTGTGCTTT 57.043 45.000 0.00 0.00 36.41 3.51
5401 5818 3.446442 AATGAGAATGGGTCTGTGCTT 57.554 42.857 0.00 0.00 36.41 3.91
5402 5819 3.446442 AAATGAGAATGGGTCTGTGCT 57.554 42.857 0.00 0.00 36.41 4.40
5403 5820 4.240096 CAAAAATGAGAATGGGTCTGTGC 58.760 43.478 0.00 0.00 36.41 4.57
5404 5821 5.458041 ACAAAAATGAGAATGGGTCTGTG 57.542 39.130 0.00 0.00 36.41 3.66
5405 5822 4.524328 GGACAAAAATGAGAATGGGTCTGT 59.476 41.667 0.00 0.00 36.41 3.41
5406 5823 4.523943 TGGACAAAAATGAGAATGGGTCTG 59.476 41.667 0.00 0.00 36.41 3.51
5407 5824 4.739793 TGGACAAAAATGAGAATGGGTCT 58.260 39.130 0.00 0.00 40.25 3.85
5408 5825 5.665916 ATGGACAAAAATGAGAATGGGTC 57.334 39.130 0.00 0.00 0.00 4.46
5409 5826 6.438186 AAATGGACAAAAATGAGAATGGGT 57.562 33.333 0.00 0.00 0.00 4.51
5410 5827 6.711645 ACAAAATGGACAAAAATGAGAATGGG 59.288 34.615 0.00 0.00 0.00 4.00
5411 5828 7.095102 GGACAAAATGGACAAAAATGAGAATGG 60.095 37.037 0.00 0.00 0.00 3.16
5412 5829 7.359431 CGGACAAAATGGACAAAAATGAGAATG 60.359 37.037 0.00 0.00 0.00 2.67
5413 5830 6.646240 CGGACAAAATGGACAAAAATGAGAAT 59.354 34.615 0.00 0.00 0.00 2.40
5414 5831 5.982516 CGGACAAAATGGACAAAAATGAGAA 59.017 36.000 0.00 0.00 0.00 2.87
5415 5832 5.527951 CGGACAAAATGGACAAAAATGAGA 58.472 37.500 0.00 0.00 0.00 3.27
5416 5833 4.150451 GCGGACAAAATGGACAAAAATGAG 59.850 41.667 0.00 0.00 0.00 2.90
5417 5834 4.054671 GCGGACAAAATGGACAAAAATGA 58.945 39.130 0.00 0.00 0.00 2.57
5418 5835 4.057432 AGCGGACAAAATGGACAAAAATG 58.943 39.130 0.00 0.00 0.00 2.32
5419 5836 4.306600 GAGCGGACAAAATGGACAAAAAT 58.693 39.130 0.00 0.00 0.00 1.82
5420 5837 3.712187 GAGCGGACAAAATGGACAAAAA 58.288 40.909 0.00 0.00 0.00 1.94
5421 5838 2.287308 CGAGCGGACAAAATGGACAAAA 60.287 45.455 0.00 0.00 0.00 2.44
5422 5839 1.265635 CGAGCGGACAAAATGGACAAA 59.734 47.619 0.00 0.00 0.00 2.83
5423 5840 0.871722 CGAGCGGACAAAATGGACAA 59.128 50.000 0.00 0.00 0.00 3.18
5424 5841 0.953471 CCGAGCGGACAAAATGGACA 60.953 55.000 2.00 0.00 37.50 4.02
5425 5842 0.672401 TCCGAGCGGACAAAATGGAC 60.672 55.000 7.66 0.00 39.76 4.02
5426 5843 1.674637 TCCGAGCGGACAAAATGGA 59.325 52.632 7.66 0.00 39.76 3.41
5427 5844 4.294523 TCCGAGCGGACAAAATGG 57.705 55.556 7.66 0.00 39.76 3.16
5435 5852 1.001520 TCAAAAATGAGTCCGAGCGGA 59.998 47.619 7.66 7.66 42.90 5.54
5436 5853 1.128692 GTCAAAAATGAGTCCGAGCGG 59.871 52.381 1.74 1.74 0.00 5.52
5437 5854 1.201812 CGTCAAAAATGAGTCCGAGCG 60.202 52.381 0.00 0.00 0.00 5.03
5438 5855 1.464189 GCGTCAAAAATGAGTCCGAGC 60.464 52.381 0.00 0.00 0.00 5.03
5439 5856 1.798223 TGCGTCAAAAATGAGTCCGAG 59.202 47.619 0.00 0.00 0.00 4.63
5440 5857 1.872388 TGCGTCAAAAATGAGTCCGA 58.128 45.000 0.00 0.00 0.00 4.55
5441 5858 2.679355 TTGCGTCAAAAATGAGTCCG 57.321 45.000 0.00 0.00 0.00 4.79
5442 5859 4.148696 CACATTTGCGTCAAAAATGAGTCC 59.851 41.667 14.06 0.00 44.30 3.85
5443 5860 4.148696 CCACATTTGCGTCAAAAATGAGTC 59.851 41.667 14.06 0.00 44.30 3.36
5444 5861 4.050553 CCACATTTGCGTCAAAAATGAGT 58.949 39.130 14.06 6.82 44.30 3.41
5445 5862 3.429543 CCCACATTTGCGTCAAAAATGAG 59.570 43.478 14.06 7.40 44.30 2.90
5446 5863 3.181471 ACCCACATTTGCGTCAAAAATGA 60.181 39.130 14.06 0.00 44.30 2.57
5447 5864 3.129871 ACCCACATTTGCGTCAAAAATG 58.870 40.909 8.65 7.21 46.06 2.32
5448 5865 3.467374 ACCCACATTTGCGTCAAAAAT 57.533 38.095 8.65 0.00 36.90 1.82
5449 5866 2.932614 CAACCCACATTTGCGTCAAAAA 59.067 40.909 8.65 0.00 36.90 1.94
5450 5867 2.544685 CAACCCACATTTGCGTCAAAA 58.455 42.857 8.65 0.00 36.90 2.44
5451 5868 1.202463 CCAACCCACATTTGCGTCAAA 60.202 47.619 7.32 7.32 37.75 2.69
5452 5869 0.387202 CCAACCCACATTTGCGTCAA 59.613 50.000 0.00 0.00 0.00 3.18
5453 5870 0.466372 TCCAACCCACATTTGCGTCA 60.466 50.000 0.00 0.00 0.00 4.35
5454 5871 0.240945 CTCCAACCCACATTTGCGTC 59.759 55.000 0.00 0.00 0.00 5.19
5455 5872 1.178534 CCTCCAACCCACATTTGCGT 61.179 55.000 0.00 0.00 0.00 5.24
5456 5873 1.178534 ACCTCCAACCCACATTTGCG 61.179 55.000 0.00 0.00 0.00 4.85
5457 5874 0.318120 CACCTCCAACCCACATTTGC 59.682 55.000 0.00 0.00 0.00 3.68
5458 5875 0.968405 CCACCTCCAACCCACATTTG 59.032 55.000 0.00 0.00 0.00 2.32
5459 5876 0.856982 TCCACCTCCAACCCACATTT 59.143 50.000 0.00 0.00 0.00 2.32
5460 5877 0.112412 GTCCACCTCCAACCCACATT 59.888 55.000 0.00 0.00 0.00 2.71
5461 5878 1.065410 TGTCCACCTCCAACCCACAT 61.065 55.000 0.00 0.00 0.00 3.21
5462 5879 1.694525 TGTCCACCTCCAACCCACA 60.695 57.895 0.00 0.00 0.00 4.17
5463 5880 1.228154 GTGTCCACCTCCAACCCAC 60.228 63.158 0.00 0.00 0.00 4.61
5464 5881 1.282653 TTGTGTCCACCTCCAACCCA 61.283 55.000 0.00 0.00 0.00 4.51
5465 5882 0.106419 TTTGTGTCCACCTCCAACCC 60.106 55.000 0.00 0.00 0.00 4.11
5466 5883 1.318576 CTTTGTGTCCACCTCCAACC 58.681 55.000 0.00 0.00 0.00 3.77
5467 5884 0.668535 GCTTTGTGTCCACCTCCAAC 59.331 55.000 0.00 0.00 0.00 3.77
5468 5885 0.817634 CGCTTTGTGTCCACCTCCAA 60.818 55.000 0.00 0.00 0.00 3.53
5469 5886 1.227823 CGCTTTGTGTCCACCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
5470 5887 1.966451 CCGCTTTGTGTCCACCTCC 60.966 63.158 0.00 0.00 0.00 4.30
5471 5888 1.070786 TCCGCTTTGTGTCCACCTC 59.929 57.895 0.00 0.00 0.00 3.85
5472 5889 1.227853 GTCCGCTTTGTGTCCACCT 60.228 57.895 0.00 0.00 0.00 4.00
5473 5890 2.604174 CGTCCGCTTTGTGTCCACC 61.604 63.158 0.00 0.00 0.00 4.61
5474 5891 1.828331 GACGTCCGCTTTGTGTCCAC 61.828 60.000 3.51 0.00 0.00 4.02
5475 5892 1.593209 GACGTCCGCTTTGTGTCCA 60.593 57.895 3.51 0.00 0.00 4.02
5476 5893 0.878961 AAGACGTCCGCTTTGTGTCC 60.879 55.000 13.01 0.00 0.00 4.02
5477 5894 0.935196 AAAGACGTCCGCTTTGTGTC 59.065 50.000 13.01 0.00 34.50 3.67
5478 5895 1.063469 CAAAAGACGTCCGCTTTGTGT 59.937 47.619 13.01 0.00 35.86 3.72
5479 5896 1.063469 ACAAAAGACGTCCGCTTTGTG 59.937 47.619 27.07 17.41 35.86 3.33
5480 5897 1.063469 CACAAAAGACGTCCGCTTTGT 59.937 47.619 24.34 24.34 35.86 2.83
5481 5898 1.063469 ACACAAAAGACGTCCGCTTTG 59.937 47.619 23.41 23.41 35.86 2.77
5482 5899 1.329599 GACACAAAAGACGTCCGCTTT 59.670 47.619 13.01 6.99 37.18 3.51
5483 5900 0.935196 GACACAAAAGACGTCCGCTT 59.065 50.000 13.01 0.17 0.00 4.68
5484 5901 0.878961 GGACACAAAAGACGTCCGCT 60.879 55.000 13.01 0.00 39.86 5.52
5485 5902 1.568025 GGACACAAAAGACGTCCGC 59.432 57.895 13.01 0.00 39.86 5.54
5488 5905 2.471743 CGAAGAGGACACAAAAGACGTC 59.528 50.000 7.70 7.70 0.00 4.34
5489 5906 2.159142 ACGAAGAGGACACAAAAGACGT 60.159 45.455 0.00 0.00 0.00 4.34
5490 5907 2.470821 ACGAAGAGGACACAAAAGACG 58.529 47.619 0.00 0.00 0.00 4.18
5491 5908 2.801111 GGACGAAGAGGACACAAAAGAC 59.199 50.000 0.00 0.00 0.00 3.01
5492 5909 2.224209 GGGACGAAGAGGACACAAAAGA 60.224 50.000 0.00 0.00 0.00 2.52
5493 5910 2.143925 GGGACGAAGAGGACACAAAAG 58.856 52.381 0.00 0.00 0.00 2.27
5494 5911 1.766496 AGGGACGAAGAGGACACAAAA 59.234 47.619 0.00 0.00 0.00 2.44
5495 5912 1.070134 CAGGGACGAAGAGGACACAAA 59.930 52.381 0.00 0.00 0.00 2.83
5496 5913 0.679505 CAGGGACGAAGAGGACACAA 59.320 55.000 0.00 0.00 0.00 3.33
5497 5914 1.816863 GCAGGGACGAAGAGGACACA 61.817 60.000 0.00 0.00 0.00 3.72
5498 5915 1.079750 GCAGGGACGAAGAGGACAC 60.080 63.158 0.00 0.00 0.00 3.67
5499 5916 1.228894 AGCAGGGACGAAGAGGACA 60.229 57.895 0.00 0.00 0.00 4.02
5500 5917 1.216710 CAGCAGGGACGAAGAGGAC 59.783 63.158 0.00 0.00 0.00 3.85
5501 5918 1.984570 CCAGCAGGGACGAAGAGGA 60.985 63.158 0.00 0.00 40.01 3.71
5502 5919 2.286523 ACCAGCAGGGACGAAGAGG 61.287 63.158 0.00 0.00 41.15 3.69
5503 5920 1.079543 CACCAGCAGGGACGAAGAG 60.080 63.158 0.00 0.00 41.15 2.85
5504 5921 3.059982 CACCAGCAGGGACGAAGA 58.940 61.111 0.00 0.00 41.15 2.87
5505 5922 2.743928 GCACCAGCAGGGACGAAG 60.744 66.667 0.00 0.00 41.58 3.79
5506 5923 3.240134 GAGCACCAGCAGGGACGAA 62.240 63.158 0.00 0.00 45.49 3.85
5507 5924 3.695606 GAGCACCAGCAGGGACGA 61.696 66.667 0.00 0.00 45.49 4.20
5530 5947 3.064324 AAGGATGGGCGCTTGTGC 61.064 61.111 7.64 0.00 0.00 4.57
5531 5948 2.879907 CAAGGATGGGCGCTTGTG 59.120 61.111 7.64 0.00 0.00 3.33
5532 5949 3.064324 GCAAGGATGGGCGCTTGT 61.064 61.111 7.64 0.00 31.46 3.16
5533 5950 3.830192 GGCAAGGATGGGCGCTTG 61.830 66.667 7.64 3.58 0.00 4.01
5545 5962 4.404654 GAAACTGGCGCCGGCAAG 62.405 66.667 35.17 22.21 46.30 4.01
5554 5971 4.179579 GCATCGGCGGAAACTGGC 62.180 66.667 7.21 0.00 0.00 4.85
5567 5984 2.165301 GCGTGTGGGTACGAGCATC 61.165 63.158 2.14 0.00 46.46 3.91
5568 5985 2.125673 GCGTGTGGGTACGAGCAT 60.126 61.111 2.14 0.00 46.46 3.79
5569 5986 4.710695 CGCGTGTGGGTACGAGCA 62.711 66.667 0.00 0.00 46.46 4.26
5595 6012 3.083997 AAGAGGCTACCGGCAGGG 61.084 66.667 8.08 0.00 44.01 4.45
5596 6013 2.185310 AACAAGAGGCTACCGGCAGG 62.185 60.000 0.00 0.00 44.01 4.85
5597 6014 0.321653 AAACAAGAGGCTACCGGCAG 60.322 55.000 0.00 0.00 44.01 4.85
5598 6015 0.109723 AAAACAAGAGGCTACCGGCA 59.890 50.000 0.00 0.00 44.01 5.69
5599 6016 1.199327 GAAAAACAAGAGGCTACCGGC 59.801 52.381 0.00 0.00 40.90 6.13
5600 6017 2.779506 AGAAAAACAAGAGGCTACCGG 58.220 47.619 0.00 0.00 0.00 5.28
5601 6018 4.274950 TGAAAGAAAAACAAGAGGCTACCG 59.725 41.667 0.00 0.00 0.00 4.02
5602 6019 5.767816 TGAAAGAAAAACAAGAGGCTACC 57.232 39.130 0.00 0.00 0.00 3.18
5621 6038 9.515020 GAAGCGGACATTTCATTTTATTATGAA 57.485 29.630 0.00 0.00 41.47 2.57
5622 6039 8.681806 TGAAGCGGACATTTCATTTTATTATGA 58.318 29.630 0.00 0.00 32.87 2.15
5623 6040 8.854979 TGAAGCGGACATTTCATTTTATTATG 57.145 30.769 0.00 0.00 0.00 1.90
5624 6041 9.868277 TTTGAAGCGGACATTTCATTTTATTAT 57.132 25.926 0.00 0.00 33.68 1.28
5625 6042 9.868277 ATTTGAAGCGGACATTTCATTTTATTA 57.132 25.926 0.00 0.00 33.68 0.98
5626 6043 8.658609 CATTTGAAGCGGACATTTCATTTTATT 58.341 29.630 0.00 0.00 33.68 1.40
5627 6044 7.278424 CCATTTGAAGCGGACATTTCATTTTAT 59.722 33.333 0.00 0.00 33.68 1.40
5628 6045 6.589523 CCATTTGAAGCGGACATTTCATTTTA 59.410 34.615 0.00 0.00 33.68 1.52
5629 6046 5.409214 CCATTTGAAGCGGACATTTCATTTT 59.591 36.000 0.00 0.00 33.68 1.82
5630 6047 4.931002 CCATTTGAAGCGGACATTTCATTT 59.069 37.500 0.00 0.00 33.68 2.32
5631 6048 4.497300 CCATTTGAAGCGGACATTTCATT 58.503 39.130 0.00 0.00 33.68 2.57
5632 6049 3.119029 CCCATTTGAAGCGGACATTTCAT 60.119 43.478 0.00 0.00 33.68 2.57
5633 6050 2.230992 CCCATTTGAAGCGGACATTTCA 59.769 45.455 0.00 0.00 0.00 2.69
5634 6051 2.231235 ACCCATTTGAAGCGGACATTTC 59.769 45.455 0.00 0.00 0.00 2.17
5635 6052 2.231235 GACCCATTTGAAGCGGACATTT 59.769 45.455 0.00 0.00 0.00 2.32
5636 6053 1.818674 GACCCATTTGAAGCGGACATT 59.181 47.619 0.00 0.00 0.00 2.71
5637 6054 1.463674 GACCCATTTGAAGCGGACAT 58.536 50.000 0.00 0.00 0.00 3.06
5638 6055 0.953471 CGACCCATTTGAAGCGGACA 60.953 55.000 0.00 0.00 0.00 4.02
5639 6056 1.794222 CGACCCATTTGAAGCGGAC 59.206 57.895 0.00 0.00 0.00 4.79
5640 6057 2.038269 GCGACCCATTTGAAGCGGA 61.038 57.895 0.00 0.00 0.00 5.54
5641 6058 1.586154 AAGCGACCCATTTGAAGCGG 61.586 55.000 0.00 0.00 0.00 5.52
5642 6059 0.454957 CAAGCGACCCATTTGAAGCG 60.455 55.000 0.00 0.00 0.00 4.68
5643 6060 0.881118 TCAAGCGACCCATTTGAAGC 59.119 50.000 0.00 0.00 0.00 3.86
5644 6061 2.154462 ACTCAAGCGACCCATTTGAAG 58.846 47.619 0.00 0.00 31.11 3.02
5645 6062 2.270352 ACTCAAGCGACCCATTTGAA 57.730 45.000 0.00 0.00 31.11 2.69
5646 6063 1.879380 CAACTCAAGCGACCCATTTGA 59.121 47.619 0.00 0.00 0.00 2.69
5647 6064 1.068333 CCAACTCAAGCGACCCATTTG 60.068 52.381 0.00 0.00 0.00 2.32
5648 6065 1.247567 CCAACTCAAGCGACCCATTT 58.752 50.000 0.00 0.00 0.00 2.32
5649 6066 0.609131 CCCAACTCAAGCGACCCATT 60.609 55.000 0.00 0.00 0.00 3.16
5650 6067 1.002134 CCCAACTCAAGCGACCCAT 60.002 57.895 0.00 0.00 0.00 4.00
5651 6068 2.429930 CCCAACTCAAGCGACCCA 59.570 61.111 0.00 0.00 0.00 4.51
5652 6069 1.966451 CACCCAACTCAAGCGACCC 60.966 63.158 0.00 0.00 0.00 4.46
5653 6070 2.617274 GCACCCAACTCAAGCGACC 61.617 63.158 0.00 0.00 0.00 4.79
5654 6071 1.891919 TGCACCCAACTCAAGCGAC 60.892 57.895 0.00 0.00 0.00 5.19
5655 6072 1.891919 GTGCACCCAACTCAAGCGA 60.892 57.895 5.22 0.00 0.00 4.93
5656 6073 1.723608 TTGTGCACCCAACTCAAGCG 61.724 55.000 15.69 0.00 0.00 4.68
5657 6074 0.459489 TTTGTGCACCCAACTCAAGC 59.541 50.000 15.69 0.00 0.00 4.01
5658 6075 2.361757 TGATTTGTGCACCCAACTCAAG 59.638 45.455 15.69 0.00 32.94 3.02
5659 6076 2.382882 TGATTTGTGCACCCAACTCAA 58.617 42.857 15.69 0.00 32.94 3.02
5660 6077 2.064434 TGATTTGTGCACCCAACTCA 57.936 45.000 15.69 9.95 33.30 3.41
5661 6078 2.297033 ACATGATTTGTGCACCCAACTC 59.703 45.455 15.69 7.37 37.11 3.01
5662 6079 2.297033 GACATGATTTGTGCACCCAACT 59.703 45.455 15.69 0.00 39.18 3.16
5663 6080 2.610232 GGACATGATTTGTGCACCCAAC 60.610 50.000 15.69 4.37 45.35 3.77
5664 6081 1.617850 GGACATGATTTGTGCACCCAA 59.382 47.619 15.69 7.76 45.35 4.12
5665 6082 1.255882 GGACATGATTTGTGCACCCA 58.744 50.000 15.69 7.56 45.35 4.51
5666 6083 0.171007 CGGACATGATTTGTGCACCC 59.829 55.000 15.69 3.54 46.27 4.61
5667 6084 3.700577 CGGACATGATTTGTGCACC 57.299 52.632 15.69 0.00 46.27 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.