Multiple sequence alignment - TraesCS1A01G356100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G356100 chr1A 100.000 3088 0 0 1 3088 539322190 539325277 0.000000e+00 5703.0
1 TraesCS1A01G356100 chr1D 90.151 2386 107 49 1 2339 439416271 439413967 0.000000e+00 2987.0
2 TraesCS1A01G356100 chr1B 91.419 1818 97 24 310 2108 596249273 596247496 0.000000e+00 2438.0
3 TraesCS1A01G356100 chr1B 95.420 262 11 1 1 261 596249536 596249275 1.710000e-112 416.0
4 TraesCS1A01G356100 chr1B 89.655 145 11 1 2199 2339 596245743 596245599 6.800000e-42 182.0
5 TraesCS1A01G356100 chrUn 85.433 1778 168 42 340 2087 235703232 235701516 0.000000e+00 1764.0
6 TraesCS1A01G356100 chrUn 85.352 1775 169 42 340 2084 85700450 85702163 0.000000e+00 1753.0
7 TraesCS1A01G356100 chrUn 82.693 1953 204 74 341 2240 185556473 185554602 0.000000e+00 1611.0
8 TraesCS1A01G356100 chrUn 83.132 1654 170 61 341 1947 85623816 85625407 0.000000e+00 1408.0
9 TraesCS1A01G356100 chrUn 91.892 111 4 4 2366 2474 435013922 435014029 1.920000e-32 150.0
10 TraesCS1A01G356100 chr7D 83.572 1954 166 80 340 2240 152086351 152088202 0.000000e+00 1687.0
11 TraesCS1A01G356100 chr7D 83.222 1800 179 61 331 2087 151917602 151915883 0.000000e+00 1537.0
12 TraesCS1A01G356100 chr7D 83.294 1694 175 58 420 2087 151791995 151790384 0.000000e+00 1461.0
13 TraesCS1A01G356100 chr7D 87.451 773 92 3 1319 2087 184574311 184573540 0.000000e+00 885.0
14 TraesCS1A01G356100 chr7D 80.291 756 80 39 403 1137 152116212 152116919 9.880000e-140 507.0
15 TraesCS1A01G356100 chr7D 91.713 181 9 5 2366 2545 3934435 3934610 2.380000e-61 246.0
16 TraesCS1A01G356100 chr7B 82.693 1953 204 74 341 2240 113627621 113625750 0.000000e+00 1611.0
17 TraesCS1A01G356100 chr7B 86.210 1298 110 33 963 2236 113802869 113801617 0.000000e+00 1341.0
18 TraesCS1A01G356100 chr7B 86.838 1246 109 31 872 2087 113922416 113923636 0.000000e+00 1341.0
19 TraesCS1A01G356100 chr7B 82.973 1110 153 28 999 2087 154161961 154160867 0.000000e+00 970.0
20 TraesCS1A01G356100 chr7B 97.119 486 13 1 2603 3088 708470329 708470813 0.000000e+00 819.0
21 TraesCS1A01G356100 chr7B 76.951 551 60 33 331 862 113914928 113915430 5.110000e-63 252.0
22 TraesCS1A01G356100 chr7B 91.892 185 8 4 2362 2545 462056606 462056784 5.110000e-63 252.0
23 TraesCS1A01G356100 chr7A 84.637 1393 141 34 742 2109 152341990 152343334 0.000000e+00 1319.0
24 TraesCS1A01G356100 chr7A 85.681 1285 115 35 963 2227 152507110 152508345 0.000000e+00 1290.0
25 TraesCS1A01G356100 chr7A 85.061 1071 120 24 1023 2084 151874318 151875357 0.000000e+00 1055.0
26 TraesCS1A01G356100 chr7A 82.491 1108 162 27 999 2087 191665182 191664088 0.000000e+00 942.0
27 TraesCS1A01G356100 chr7A 83.745 486 39 22 341 813 152506528 152506986 1.020000e-114 424.0
28 TraesCS1A01G356100 chr7A 97.143 35 1 0 2603 2637 734997722 734997688 3.330000e-05 60.2
29 TraesCS1A01G356100 chr5B 94.021 485 29 0 2603 3087 659439826 659439342 0.000000e+00 736.0
30 TraesCS1A01G356100 chr5A 92.828 488 17 3 2601 3088 455481047 455481516 0.000000e+00 691.0
31 TraesCS1A01G356100 chr4B 91.786 487 21 4 2603 3088 564629345 564629813 0.000000e+00 660.0
32 TraesCS1A01G356100 chr3A 90.556 180 12 4 2367 2545 640867902 640867727 1.850000e-57 233.0
33 TraesCS1A01G356100 chr2A 90.055 181 13 4 2366 2545 17471166 17470990 2.400000e-56 230.0
34 TraesCS1A01G356100 chr2A 100.000 36 0 0 2599 2634 528103170 528103205 1.990000e-07 67.6
35 TraesCS1A01G356100 chr4A 90.833 120 6 4 2366 2484 705956313 705956428 4.120000e-34 156.0
36 TraesCS1A01G356100 chr4A 91.346 104 5 3 2366 2468 706092289 706092389 4.150000e-29 139.0
37 TraesCS1A01G356100 chr3B 86.555 119 11 4 2367 2484 115803638 115803524 3.230000e-25 126.0
38 TraesCS1A01G356100 chr3B 93.056 72 1 3 2367 2437 773881376 773881308 5.450000e-18 102.0
39 TraesCS1A01G356100 chr3B 100.000 32 0 0 2603 2634 206186868 206186837 3.330000e-05 60.2
40 TraesCS1A01G356100 chr3B 97.222 36 0 1 2600 2634 672609719 672609754 3.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G356100 chr1A 539322190 539325277 3087 False 5703 5703 100.000000 1 3088 1 chr1A.!!$F1 3087
1 TraesCS1A01G356100 chr1D 439413967 439416271 2304 True 2987 2987 90.151000 1 2339 1 chr1D.!!$R1 2338
2 TraesCS1A01G356100 chr1B 596245599 596249536 3937 True 1012 2438 92.164667 1 2339 3 chr1B.!!$R1 2338
3 TraesCS1A01G356100 chrUn 235701516 235703232 1716 True 1764 1764 85.433000 340 2087 1 chrUn.!!$R2 1747
4 TraesCS1A01G356100 chrUn 85700450 85702163 1713 False 1753 1753 85.352000 340 2084 1 chrUn.!!$F2 1744
5 TraesCS1A01G356100 chrUn 185554602 185556473 1871 True 1611 1611 82.693000 341 2240 1 chrUn.!!$R1 1899
6 TraesCS1A01G356100 chrUn 85623816 85625407 1591 False 1408 1408 83.132000 341 1947 1 chrUn.!!$F1 1606
7 TraesCS1A01G356100 chr7D 152086351 152088202 1851 False 1687 1687 83.572000 340 2240 1 chr7D.!!$F2 1900
8 TraesCS1A01G356100 chr7D 151915883 151917602 1719 True 1537 1537 83.222000 331 2087 1 chr7D.!!$R2 1756
9 TraesCS1A01G356100 chr7D 151790384 151791995 1611 True 1461 1461 83.294000 420 2087 1 chr7D.!!$R1 1667
10 TraesCS1A01G356100 chr7D 184573540 184574311 771 True 885 885 87.451000 1319 2087 1 chr7D.!!$R3 768
11 TraesCS1A01G356100 chr7D 152116212 152116919 707 False 507 507 80.291000 403 1137 1 chr7D.!!$F3 734
12 TraesCS1A01G356100 chr7B 113625750 113627621 1871 True 1611 1611 82.693000 341 2240 1 chr7B.!!$R1 1899
13 TraesCS1A01G356100 chr7B 113801617 113802869 1252 True 1341 1341 86.210000 963 2236 1 chr7B.!!$R2 1273
14 TraesCS1A01G356100 chr7B 113922416 113923636 1220 False 1341 1341 86.838000 872 2087 1 chr7B.!!$F2 1215
15 TraesCS1A01G356100 chr7B 154160867 154161961 1094 True 970 970 82.973000 999 2087 1 chr7B.!!$R3 1088
16 TraesCS1A01G356100 chr7B 113914928 113915430 502 False 252 252 76.951000 331 862 1 chr7B.!!$F1 531
17 TraesCS1A01G356100 chr7A 152341990 152343334 1344 False 1319 1319 84.637000 742 2109 1 chr7A.!!$F2 1367
18 TraesCS1A01G356100 chr7A 151874318 151875357 1039 False 1055 1055 85.061000 1023 2084 1 chr7A.!!$F1 1061
19 TraesCS1A01G356100 chr7A 191664088 191665182 1094 True 942 942 82.491000 999 2087 1 chr7A.!!$R1 1088
20 TraesCS1A01G356100 chr7A 152506528 152508345 1817 False 857 1290 84.713000 341 2227 2 chr7A.!!$F3 1886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 925 0.247655 CGTACGTTGACATGCATGCC 60.248 55.0 26.53 16.86 0.00 4.40 F
1247 1391 0.322187 AGCCCGTTGCCGTAATTCTT 60.322 50.0 0.00 0.00 42.71 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2200 0.031721 AGAACTCGCCGTCGAACTTT 59.968 50.0 0.0 0.0 44.98 2.66 R
2567 4525 0.037419 GCCACCAAATTGCATTCCGT 60.037 50.0 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 171 5.593909 TCATCGCTATGACCATCCAATTTTT 59.406 36.000 0.00 0.00 37.20 1.94
250 252 7.515861 TCATTTAGGATCATAACTACCCCATCA 59.484 37.037 0.00 0.00 0.00 3.07
259 261 4.601406 AACTACCCCATCATTTTAGCCA 57.399 40.909 0.00 0.00 0.00 4.75
308 310 5.366829 AAAAGTTCCGTAAAATCCCTTCG 57.633 39.130 0.00 0.00 0.00 3.79
453 465 1.134907 CACCCATGGAAATTCTGCAGC 60.135 52.381 15.22 0.00 0.00 5.25
552 572 7.754624 TCCCTTGGTGCATATTATATCTTGAA 58.245 34.615 0.00 0.00 0.00 2.69
553 573 8.393259 TCCCTTGGTGCATATTATATCTTGAAT 58.607 33.333 0.00 0.00 0.00 2.57
554 574 9.028284 CCCTTGGTGCATATTATATCTTGAATT 57.972 33.333 0.00 0.00 0.00 2.17
636 686 4.996758 TGATAGATTCATGGCATGTTACGG 59.003 41.667 25.62 0.38 0.00 4.02
642 692 0.393808 ATGGCATGTTACGGTGGACC 60.394 55.000 0.00 0.00 0.00 4.46
643 693 1.003112 GGCATGTTACGGTGGACCA 60.003 57.895 0.00 0.00 35.14 4.02
644 694 0.393808 GGCATGTTACGGTGGACCAT 60.394 55.000 0.00 0.00 35.14 3.55
645 695 0.732571 GCATGTTACGGTGGACCATG 59.267 55.000 0.00 0.00 36.77 3.66
646 696 1.378531 CATGTTACGGTGGACCATGG 58.621 55.000 11.19 11.19 35.14 3.66
647 697 1.065782 CATGTTACGGTGGACCATGGA 60.066 52.381 21.47 0.00 35.14 3.41
648 698 0.322322 TGTTACGGTGGACCATGGAC 59.678 55.000 21.47 13.12 35.14 4.02
656 709 1.224592 GGACCATGGACGGCAATCT 59.775 57.895 21.47 0.00 0.00 2.40
658 711 1.134220 GGACCATGGACGGCAATCTTA 60.134 52.381 21.47 0.00 0.00 2.10
661 714 2.439507 ACCATGGACGGCAATCTTAGAT 59.560 45.455 21.47 0.00 0.00 1.98
697 758 3.541632 GGCGACATCTATTTTCTTCCCA 58.458 45.455 0.00 0.00 0.00 4.37
737 798 3.660111 GTTCAGCCGCGGTTTGCT 61.660 61.111 28.70 14.91 43.27 3.91
844 925 0.247655 CGTACGTTGACATGCATGCC 60.248 55.000 26.53 16.86 0.00 4.40
853 941 1.597663 GACATGCATGCCCTACGTAAC 59.402 52.381 26.53 2.17 0.00 2.50
854 942 0.944386 CATGCATGCCCTACGTAACC 59.056 55.000 14.93 0.00 0.00 2.85
855 943 0.531974 ATGCATGCCCTACGTAACCG 60.532 55.000 16.68 0.00 40.83 4.44
856 944 1.885850 GCATGCCCTACGTAACCGG 60.886 63.158 6.36 0.00 38.78 5.28
919 1026 2.855660 TATACACACCACCATCGACG 57.144 50.000 0.00 0.00 0.00 5.12
922 1029 0.675083 ACACACCACCATCGACGTAA 59.325 50.000 0.00 0.00 0.00 3.18
951 1068 4.177026 CCAGTACCAAGACATTCTTCTCG 58.823 47.826 0.00 0.00 33.78 4.04
961 1078 4.000988 GACATTCTTCTCGGTAGCCAAAA 58.999 43.478 0.00 0.00 0.00 2.44
1236 1371 1.338769 ACTAACTTGCCTAGCCCGTTG 60.339 52.381 0.00 0.00 0.00 4.10
1237 1372 0.675522 TAACTTGCCTAGCCCGTTGC 60.676 55.000 0.00 0.00 41.71 4.17
1246 1390 0.538118 TAGCCCGTTGCCGTAATTCT 59.462 50.000 0.00 0.00 42.71 2.40
1247 1391 0.322187 AGCCCGTTGCCGTAATTCTT 60.322 50.000 0.00 0.00 42.71 2.52
1248 1392 0.524414 GCCCGTTGCCGTAATTCTTT 59.476 50.000 0.00 0.00 0.00 2.52
1249 1393 1.731098 GCCCGTTGCCGTAATTCTTTG 60.731 52.381 0.00 0.00 0.00 2.77
1263 1411 2.689553 TCTTTGTGCTGCCATCGATA 57.310 45.000 0.00 0.00 0.00 2.92
1289 1449 7.363205 TGTCATGACATGTGTACTTACAATG 57.637 36.000 24.56 1.49 35.64 2.82
1292 1452 8.331022 GTCATGACATGTGTACTTACAATGATC 58.669 37.037 21.07 0.00 38.04 2.92
1312 1472 2.050533 GCCGTGCGTGCAAATGAA 60.051 55.556 0.00 0.00 0.00 2.57
1364 1572 1.227383 GGAATCCACGGAGGGCAAT 59.773 57.895 0.00 0.00 38.24 3.56
1808 2038 2.433838 CTCAGGTGCAGGAGCGTG 60.434 66.667 0.00 0.00 46.23 5.34
1936 2166 4.856607 GCTCCTCTTCGACGCCGG 62.857 72.222 0.00 0.00 36.24 6.13
2087 2317 1.846007 AATGCCACGCCCTCAATTAA 58.154 45.000 0.00 0.00 0.00 1.40
2088 2318 2.071778 ATGCCACGCCCTCAATTAAT 57.928 45.000 0.00 0.00 0.00 1.40
2089 2319 1.846007 TGCCACGCCCTCAATTAATT 58.154 45.000 0.00 0.00 0.00 1.40
2090 2320 3.006112 TGCCACGCCCTCAATTAATTA 57.994 42.857 0.00 0.00 0.00 1.40
2145 4073 2.842457 TGGTGCATGCATCTGATACTC 58.158 47.619 30.00 11.24 0.00 2.59
2146 4074 2.171027 TGGTGCATGCATCTGATACTCA 59.829 45.455 30.00 5.86 0.00 3.41
2147 4075 2.547211 GGTGCATGCATCTGATACTCAC 59.453 50.000 25.64 5.79 0.00 3.51
2148 4076 2.547211 GTGCATGCATCTGATACTCACC 59.453 50.000 25.64 1.60 0.00 4.02
2149 4077 1.797046 GCATGCATCTGATACTCACCG 59.203 52.381 14.21 0.00 0.00 4.94
2150 4078 2.410939 CATGCATCTGATACTCACCGG 58.589 52.381 0.00 0.00 0.00 5.28
2151 4079 1.775385 TGCATCTGATACTCACCGGA 58.225 50.000 9.46 0.00 0.00 5.14
2152 4080 1.683385 TGCATCTGATACTCACCGGAG 59.317 52.381 9.46 0.00 46.96 4.63
2166 4094 3.817084 TCACCGGAGTACGTATTATCCAG 59.183 47.826 9.46 12.75 42.24 3.86
2168 4096 3.817647 ACCGGAGTACGTATTATCCAGTC 59.182 47.826 9.46 2.78 42.24 3.51
2178 4106 7.584122 ACGTATTATCCAGTCTAGTGTGATT 57.416 36.000 0.00 0.00 0.00 2.57
2261 4215 6.424207 GCTAATGAGTAAGTATAGTGTTGCCC 59.576 42.308 0.00 0.00 0.00 5.36
2276 4230 0.106769 TGCCCTGTGTCATTGTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
2339 4297 4.920828 TGGGCCTCCACTTGAAAC 57.079 55.556 4.53 0.00 38.32 2.78
2340 4298 2.240510 TGGGCCTCCACTTGAAACT 58.759 52.632 4.53 0.00 38.32 2.66
2341 4299 0.178992 TGGGCCTCCACTTGAAACTG 60.179 55.000 4.53 0.00 38.32 3.16
2342 4300 0.110486 GGGCCTCCACTTGAAACTGA 59.890 55.000 0.84 0.00 0.00 3.41
2343 4301 1.528129 GGCCTCCACTTGAAACTGAG 58.472 55.000 0.00 0.00 0.00 3.35
2344 4302 1.202818 GGCCTCCACTTGAAACTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
2345 4303 2.038557 GGCCTCCACTTGAAACTGAGTA 59.961 50.000 0.00 0.00 0.00 2.59
2346 4304 3.496160 GGCCTCCACTTGAAACTGAGTAA 60.496 47.826 0.00 0.00 0.00 2.24
2347 4305 4.327680 GCCTCCACTTGAAACTGAGTAAT 58.672 43.478 0.00 0.00 0.00 1.89
2348 4306 4.154918 GCCTCCACTTGAAACTGAGTAATG 59.845 45.833 0.00 0.00 0.00 1.90
2349 4307 4.154918 CCTCCACTTGAAACTGAGTAATGC 59.845 45.833 0.00 0.00 0.00 3.56
2350 4308 4.973168 TCCACTTGAAACTGAGTAATGCT 58.027 39.130 0.00 0.00 0.00 3.79
2351 4309 6.109156 TCCACTTGAAACTGAGTAATGCTA 57.891 37.500 0.00 0.00 0.00 3.49
2352 4310 5.932303 TCCACTTGAAACTGAGTAATGCTAC 59.068 40.000 0.00 0.00 0.00 3.58
2353 4311 5.700832 CCACTTGAAACTGAGTAATGCTACA 59.299 40.000 0.00 0.00 0.00 2.74
2354 4312 6.347725 CCACTTGAAACTGAGTAATGCTACAC 60.348 42.308 0.00 0.00 0.00 2.90
2355 4313 5.405571 ACTTGAAACTGAGTAATGCTACACG 59.594 40.000 0.00 0.00 0.00 4.49
2356 4314 3.678072 TGAAACTGAGTAATGCTACACGC 59.322 43.478 0.00 0.00 39.77 5.34
2364 4322 3.299977 TGCTACACGCACGGACCT 61.300 61.111 0.00 0.00 45.47 3.85
2365 4323 2.809601 GCTACACGCACGGACCTG 60.810 66.667 0.00 0.00 38.92 4.00
2366 4324 2.809601 CTACACGCACGGACCTGC 60.810 66.667 6.00 6.00 0.00 4.85
2367 4325 3.567478 CTACACGCACGGACCTGCA 62.567 63.158 13.94 0.00 36.94 4.41
2368 4326 3.567478 TACACGCACGGACCTGCAG 62.567 63.158 6.78 6.78 36.94 4.41
2369 4327 4.969196 CACGCACGGACCTGCAGT 62.969 66.667 13.81 0.11 36.94 4.40
2370 4328 4.969196 ACGCACGGACCTGCAGTG 62.969 66.667 13.81 5.78 44.24 3.66
2397 4355 3.467803 GCTATGTTGTAAGCTACAGGGG 58.532 50.000 0.00 0.00 40.24 4.79
2398 4356 2.420058 ATGTTGTAAGCTACAGGGGC 57.580 50.000 0.00 0.00 40.24 5.80
2399 4357 0.326927 TGTTGTAAGCTACAGGGGCC 59.673 55.000 0.00 0.00 40.24 5.80
2400 4358 0.326927 GTTGTAAGCTACAGGGGCCA 59.673 55.000 4.39 0.00 40.24 5.36
2401 4359 1.064685 GTTGTAAGCTACAGGGGCCAT 60.065 52.381 4.39 0.00 40.24 4.40
2402 4360 0.546122 TGTAAGCTACAGGGGCCATG 59.454 55.000 18.06 18.06 34.06 3.66
2403 4361 0.819666 GTAAGCTACAGGGGCCATGC 60.820 60.000 19.71 4.17 0.00 4.06
2422 4380 4.726304 CCCCGCCCCGCTTTTGTA 62.726 66.667 0.00 0.00 0.00 2.41
2423 4381 2.673687 CCCGCCCCGCTTTTGTAA 60.674 61.111 0.00 0.00 0.00 2.41
2424 4382 2.269529 CCCGCCCCGCTTTTGTAAA 61.270 57.895 0.00 0.00 0.00 2.01
2425 4383 1.600511 CCCGCCCCGCTTTTGTAAAT 61.601 55.000 0.00 0.00 0.00 1.40
2426 4384 1.096416 CCGCCCCGCTTTTGTAAATA 58.904 50.000 0.00 0.00 0.00 1.40
2427 4385 1.679153 CCGCCCCGCTTTTGTAAATAT 59.321 47.619 0.00 0.00 0.00 1.28
2428 4386 2.542824 CCGCCCCGCTTTTGTAAATATG 60.543 50.000 0.00 0.00 0.00 1.78
2429 4387 2.098443 CGCCCCGCTTTTGTAAATATGT 59.902 45.455 0.00 0.00 0.00 2.29
2430 4388 3.443976 GCCCCGCTTTTGTAAATATGTG 58.556 45.455 0.00 0.00 0.00 3.21
2431 4389 3.129638 GCCCCGCTTTTGTAAATATGTGA 59.870 43.478 0.00 0.00 0.00 3.58
2432 4390 4.381079 GCCCCGCTTTTGTAAATATGTGAA 60.381 41.667 0.00 0.00 0.00 3.18
2433 4391 5.339990 CCCCGCTTTTGTAAATATGTGAAG 58.660 41.667 0.00 0.00 0.00 3.02
2434 4392 5.339990 CCCGCTTTTGTAAATATGTGAAGG 58.660 41.667 0.00 0.00 0.00 3.46
2435 4393 5.124776 CCCGCTTTTGTAAATATGTGAAGGA 59.875 40.000 0.00 0.00 0.00 3.36
2436 4394 6.349777 CCCGCTTTTGTAAATATGTGAAGGAA 60.350 38.462 0.00 0.00 0.00 3.36
2437 4395 7.257722 CCGCTTTTGTAAATATGTGAAGGAAT 58.742 34.615 0.00 0.00 0.00 3.01
2438 4396 7.759433 CCGCTTTTGTAAATATGTGAAGGAATT 59.241 33.333 0.00 0.00 0.00 2.17
2439 4397 9.139174 CGCTTTTGTAAATATGTGAAGGAATTT 57.861 29.630 0.00 0.00 0.00 1.82
2467 4425 7.896383 TTTTTGGAGAGAAAGATGAGGAAAA 57.104 32.000 0.00 0.00 0.00 2.29
2468 4426 7.516198 TTTTGGAGAGAAAGATGAGGAAAAG 57.484 36.000 0.00 0.00 0.00 2.27
2469 4427 5.832539 TGGAGAGAAAGATGAGGAAAAGT 57.167 39.130 0.00 0.00 0.00 2.66
2470 4428 6.935240 TGGAGAGAAAGATGAGGAAAAGTA 57.065 37.500 0.00 0.00 0.00 2.24
2471 4429 6.940739 TGGAGAGAAAGATGAGGAAAAGTAG 58.059 40.000 0.00 0.00 0.00 2.57
2472 4430 6.726299 TGGAGAGAAAGATGAGGAAAAGTAGA 59.274 38.462 0.00 0.00 0.00 2.59
2473 4431 7.093552 TGGAGAGAAAGATGAGGAAAAGTAGAG 60.094 40.741 0.00 0.00 0.00 2.43
2474 4432 7.093509 GGAGAGAAAGATGAGGAAAAGTAGAGT 60.094 40.741 0.00 0.00 0.00 3.24
2475 4433 8.201242 AGAGAAAGATGAGGAAAAGTAGAGTT 57.799 34.615 0.00 0.00 0.00 3.01
2476 4434 8.655901 AGAGAAAGATGAGGAAAAGTAGAGTTT 58.344 33.333 0.00 0.00 0.00 2.66
2477 4435 9.278978 GAGAAAGATGAGGAAAAGTAGAGTTTT 57.721 33.333 0.00 0.00 32.18 2.43
2478 4436 9.634021 AGAAAGATGAGGAAAAGTAGAGTTTTT 57.366 29.630 0.00 0.00 29.58 1.94
2494 4452 2.903404 TTTTTGCCCTCCCAAACGT 58.097 47.368 0.00 0.00 34.68 3.99
2495 4453 0.747852 TTTTTGCCCTCCCAAACGTC 59.252 50.000 0.00 0.00 34.68 4.34
2496 4454 1.110518 TTTTGCCCTCCCAAACGTCC 61.111 55.000 0.00 0.00 34.68 4.79
2497 4455 2.285889 TTTGCCCTCCCAAACGTCCA 62.286 55.000 0.00 0.00 30.28 4.02
2498 4456 2.671963 GCCCTCCCAAACGTCCAC 60.672 66.667 0.00 0.00 0.00 4.02
2499 4457 2.833227 CCCTCCCAAACGTCCACA 59.167 61.111 0.00 0.00 0.00 4.17
2500 4458 1.378762 CCCTCCCAAACGTCCACAT 59.621 57.895 0.00 0.00 0.00 3.21
2501 4459 0.251165 CCCTCCCAAACGTCCACATT 60.251 55.000 0.00 0.00 0.00 2.71
2502 4460 1.616159 CCTCCCAAACGTCCACATTT 58.384 50.000 0.00 0.00 0.00 2.32
2503 4461 2.553466 CCCTCCCAAACGTCCACATTTA 60.553 50.000 0.00 0.00 0.00 1.40
2504 4462 3.352648 CCTCCCAAACGTCCACATTTAT 58.647 45.455 0.00 0.00 0.00 1.40
2505 4463 3.128589 CCTCCCAAACGTCCACATTTATG 59.871 47.826 0.00 0.00 0.00 1.90
2506 4464 3.756434 CTCCCAAACGTCCACATTTATGT 59.244 43.478 0.00 0.00 42.84 2.29
2507 4465 4.145807 TCCCAAACGTCCACATTTATGTT 58.854 39.130 0.00 0.00 39.39 2.71
2508 4466 4.585162 TCCCAAACGTCCACATTTATGTTT 59.415 37.500 0.00 0.00 39.39 2.83
2509 4467 4.683781 CCCAAACGTCCACATTTATGTTTG 59.316 41.667 11.39 11.39 45.64 2.93
2510 4468 5.820926 CAAACGTCCACATTTATGTTTGG 57.179 39.130 10.75 0.00 43.80 3.28
2511 4469 5.285651 CAAACGTCCACATTTATGTTTGGT 58.714 37.500 10.75 0.00 43.80 3.67
2512 4470 4.759516 ACGTCCACATTTATGTTTGGTC 57.240 40.909 0.00 0.00 39.39 4.02
2513 4471 3.504520 ACGTCCACATTTATGTTTGGTCC 59.495 43.478 0.00 0.00 39.39 4.46
2514 4472 3.119637 CGTCCACATTTATGTTTGGTCCC 60.120 47.826 0.00 0.00 39.39 4.46
2515 4473 3.194755 GTCCACATTTATGTTTGGTCCCC 59.805 47.826 0.00 0.00 39.39 4.81
2516 4474 2.499693 CCACATTTATGTTTGGTCCCCC 59.500 50.000 0.00 0.00 39.39 5.40
2533 4491 3.893326 CCCCCAAAAGAAATTGCCTAG 57.107 47.619 0.00 0.00 0.00 3.02
2534 4492 2.093500 CCCCCAAAAGAAATTGCCTAGC 60.093 50.000 0.00 0.00 0.00 3.42
2535 4493 2.833943 CCCCAAAAGAAATTGCCTAGCT 59.166 45.455 0.00 0.00 0.00 3.32
2536 4494 3.118992 CCCCAAAAGAAATTGCCTAGCTC 60.119 47.826 0.00 0.00 0.00 4.09
2537 4495 3.118992 CCCAAAAGAAATTGCCTAGCTCC 60.119 47.826 0.00 0.00 0.00 4.70
2538 4496 3.428045 CCAAAAGAAATTGCCTAGCTCCG 60.428 47.826 0.00 0.00 0.00 4.63
2539 4497 1.383523 AAGAAATTGCCTAGCTCCGC 58.616 50.000 0.00 0.00 0.00 5.54
2540 4498 0.464554 AGAAATTGCCTAGCTCCGCC 60.465 55.000 0.00 0.00 0.00 6.13
2541 4499 0.748005 GAAATTGCCTAGCTCCGCCA 60.748 55.000 0.00 0.00 0.00 5.69
2542 4500 0.749454 AAATTGCCTAGCTCCGCCAG 60.749 55.000 0.00 0.00 0.00 4.85
2543 4501 1.915078 AATTGCCTAGCTCCGCCAGT 61.915 55.000 0.00 0.00 0.00 4.00
2544 4502 2.599645 ATTGCCTAGCTCCGCCAGTG 62.600 60.000 0.00 0.00 0.00 3.66
2556 4514 3.699894 CCAGTGCGGACCTGCTCT 61.700 66.667 2.38 8.06 39.12 4.09
2557 4515 2.345244 CAGTGCGGACCTGCTCTT 59.655 61.111 2.38 0.00 36.62 2.85
2558 4516 1.591703 CAGTGCGGACCTGCTCTTA 59.408 57.895 2.38 0.00 36.62 2.10
2559 4517 0.737715 CAGTGCGGACCTGCTCTTAC 60.738 60.000 2.38 1.08 36.62 2.34
2560 4518 1.805945 GTGCGGACCTGCTCTTACG 60.806 63.158 0.00 0.00 35.36 3.18
2561 4519 2.202756 GCGGACCTGCTCTTACGG 60.203 66.667 1.67 0.00 0.00 4.02
2562 4520 2.707849 GCGGACCTGCTCTTACGGA 61.708 63.158 1.67 0.00 0.00 4.69
2563 4521 2.017559 GCGGACCTGCTCTTACGGAT 62.018 60.000 1.67 0.00 0.00 4.18
2564 4522 0.460311 CGGACCTGCTCTTACGGATT 59.540 55.000 0.00 0.00 0.00 3.01
2565 4523 1.536284 CGGACCTGCTCTTACGGATTC 60.536 57.143 0.00 0.00 0.00 2.52
2566 4524 1.480954 GGACCTGCTCTTACGGATTCA 59.519 52.381 0.00 0.00 0.00 2.57
2567 4525 2.093658 GGACCTGCTCTTACGGATTCAA 60.094 50.000 0.00 0.00 0.00 2.69
2568 4526 2.930682 GACCTGCTCTTACGGATTCAAC 59.069 50.000 0.00 0.00 0.00 3.18
2569 4527 1.927174 CCTGCTCTTACGGATTCAACG 59.073 52.381 0.00 0.00 37.36 4.10
2570 4528 1.927174 CTGCTCTTACGGATTCAACGG 59.073 52.381 0.00 0.00 35.23 4.44
2571 4529 1.546923 TGCTCTTACGGATTCAACGGA 59.453 47.619 0.00 0.00 35.23 4.69
2572 4530 2.028839 TGCTCTTACGGATTCAACGGAA 60.029 45.455 0.00 0.00 37.45 4.30
2573 4531 3.195661 GCTCTTACGGATTCAACGGAAT 58.804 45.455 0.00 0.00 46.27 3.01
2574 4532 3.001330 GCTCTTACGGATTCAACGGAATG 59.999 47.826 0.00 0.00 43.69 2.67
2575 4533 2.933906 TCTTACGGATTCAACGGAATGC 59.066 45.455 0.00 0.00 43.69 3.56
2582 4540 4.845621 GATTCAACGGAATGCAATTTGG 57.154 40.909 0.00 0.00 43.69 3.28
2583 4541 3.742433 TTCAACGGAATGCAATTTGGT 57.258 38.095 0.00 0.00 36.07 3.67
2584 4542 3.023946 TCAACGGAATGCAATTTGGTG 57.976 42.857 0.00 0.00 36.07 4.17
2585 4543 2.067766 CAACGGAATGCAATTTGGTGG 58.932 47.619 0.00 0.00 36.07 4.61
2586 4544 0.037419 ACGGAATGCAATTTGGTGGC 60.037 50.000 0.00 0.00 36.07 5.01
2587 4545 0.037512 CGGAATGCAATTTGGTGGCA 60.038 50.000 0.00 0.00 36.07 4.92
2588 4546 1.441738 GGAATGCAATTTGGTGGCAC 58.558 50.000 9.70 9.70 40.83 5.01
2589 4547 1.002315 GGAATGCAATTTGGTGGCACT 59.998 47.619 18.45 0.00 40.83 4.40
2590 4548 2.550639 GGAATGCAATTTGGTGGCACTT 60.551 45.455 18.45 0.18 40.83 3.16
2591 4549 2.460757 ATGCAATTTGGTGGCACTTC 57.539 45.000 18.45 1.88 40.83 3.01
2592 4550 1.412079 TGCAATTTGGTGGCACTTCT 58.588 45.000 18.45 0.00 31.58 2.85
2593 4551 1.761784 TGCAATTTGGTGGCACTTCTT 59.238 42.857 18.45 3.70 31.58 2.52
2594 4552 2.170187 TGCAATTTGGTGGCACTTCTTT 59.830 40.909 18.45 4.24 31.58 2.52
2595 4553 3.386078 TGCAATTTGGTGGCACTTCTTTA 59.614 39.130 18.45 0.00 31.58 1.85
2596 4554 4.040217 TGCAATTTGGTGGCACTTCTTTAT 59.960 37.500 18.45 0.46 31.58 1.40
2597 4555 4.996758 GCAATTTGGTGGCACTTCTTTATT 59.003 37.500 18.45 6.39 0.00 1.40
2598 4556 5.106987 GCAATTTGGTGGCACTTCTTTATTG 60.107 40.000 18.45 17.06 0.00 1.90
2599 4557 6.222389 CAATTTGGTGGCACTTCTTTATTGA 58.778 36.000 18.45 0.00 0.00 2.57
2600 4558 5.860941 TTTGGTGGCACTTCTTTATTGAA 57.139 34.783 18.45 0.00 0.00 2.69
2601 4559 5.860941 TTGGTGGCACTTCTTTATTGAAA 57.139 34.783 18.45 0.00 0.00 2.69
2602 4560 5.860941 TGGTGGCACTTCTTTATTGAAAA 57.139 34.783 18.45 0.00 0.00 2.29
2603 4561 5.596845 TGGTGGCACTTCTTTATTGAAAAC 58.403 37.500 18.45 0.00 0.00 2.43
2604 4562 5.362430 TGGTGGCACTTCTTTATTGAAAACT 59.638 36.000 18.45 0.00 0.00 2.66
2605 4563 6.547880 TGGTGGCACTTCTTTATTGAAAACTA 59.452 34.615 18.45 0.00 0.00 2.24
2606 4564 7.084486 GGTGGCACTTCTTTATTGAAAACTAG 58.916 38.462 18.45 0.00 0.00 2.57
2607 4565 7.040686 GGTGGCACTTCTTTATTGAAAACTAGA 60.041 37.037 18.45 0.00 0.00 2.43
2608 4566 8.349983 GTGGCACTTCTTTATTGAAAACTAGAA 58.650 33.333 11.13 0.00 0.00 2.10
2609 4567 8.349983 TGGCACTTCTTTATTGAAAACTAGAAC 58.650 33.333 0.00 0.00 0.00 3.01
2610 4568 8.349983 GGCACTTCTTTATTGAAAACTAGAACA 58.650 33.333 0.00 0.00 0.00 3.18
2611 4569 9.899226 GCACTTCTTTATTGAAAACTAGAACAT 57.101 29.630 0.00 0.00 0.00 2.71
2617 4575 9.346725 CTTTATTGAAAACTAGAACATCAAGGC 57.653 33.333 0.00 0.00 33.91 4.35
2618 4576 5.356882 TTGAAAACTAGAACATCAAGGCG 57.643 39.130 0.00 0.00 0.00 5.52
2619 4577 3.188460 TGAAAACTAGAACATCAAGGCGC 59.812 43.478 0.00 0.00 0.00 6.53
2620 4578 1.359848 AACTAGAACATCAAGGCGCG 58.640 50.000 0.00 0.00 0.00 6.86
2621 4579 1.084370 ACTAGAACATCAAGGCGCGC 61.084 55.000 25.94 25.94 0.00 6.86
2622 4580 2.082437 CTAGAACATCAAGGCGCGCG 62.082 60.000 28.44 28.44 0.00 6.86
2623 4581 2.829043 TAGAACATCAAGGCGCGCGT 62.829 55.000 32.35 24.51 0.00 6.01
2624 4582 3.308878 GAACATCAAGGCGCGCGTT 62.309 57.895 31.17 31.17 0.00 4.84
2625 4583 3.593551 AACATCAAGGCGCGCGTTG 62.594 57.895 44.02 44.02 41.49 4.10
2640 4598 3.407083 TTGCTGCGCCCTCCCATA 61.407 61.111 4.18 0.00 0.00 2.74
2641 4599 2.756042 TTGCTGCGCCCTCCCATAT 61.756 57.895 4.18 0.00 0.00 1.78
2642 4600 2.113986 GCTGCGCCCTCCCATATT 59.886 61.111 4.18 0.00 0.00 1.28
2643 4601 1.374947 GCTGCGCCCTCCCATATTA 59.625 57.895 4.18 0.00 0.00 0.98
2644 4602 0.250727 GCTGCGCCCTCCCATATTAA 60.251 55.000 4.18 0.00 0.00 1.40
2645 4603 1.614317 GCTGCGCCCTCCCATATTAAT 60.614 52.381 4.18 0.00 0.00 1.40
2646 4604 2.086869 CTGCGCCCTCCCATATTAATG 58.913 52.381 4.18 0.00 0.00 1.90
2709 4667 9.524106 TTGTCAATCAAGATATGAATTGAATGC 57.476 29.630 0.00 0.00 42.54 3.56
2710 4668 8.139350 TGTCAATCAAGATATGAATTGAATGCC 58.861 33.333 0.00 0.00 42.54 4.40
2711 4669 8.358148 GTCAATCAAGATATGAATTGAATGCCT 58.642 33.333 0.00 0.00 42.54 4.75
2712 4670 8.573885 TCAATCAAGATATGAATTGAATGCCTC 58.426 33.333 0.00 0.00 42.54 4.70
2713 4671 8.357402 CAATCAAGATATGAATTGAATGCCTCA 58.643 33.333 0.00 0.00 42.54 3.86
2714 4672 7.885009 TCAAGATATGAATTGAATGCCTCAA 57.115 32.000 1.21 1.21 39.77 3.02
2725 4683 6.971527 TTGAATGCCTCAATTTTTAGCATG 57.028 33.333 0.00 0.00 43.08 4.06
2726 4684 5.421277 TGAATGCCTCAATTTTTAGCATGG 58.579 37.500 0.00 0.00 43.08 3.66
2727 4685 5.187381 TGAATGCCTCAATTTTTAGCATGGA 59.813 36.000 0.00 0.00 43.08 3.41
2728 4686 4.454728 TGCCTCAATTTTTAGCATGGAC 57.545 40.909 0.00 0.00 0.00 4.02
2729 4687 3.831333 TGCCTCAATTTTTAGCATGGACA 59.169 39.130 0.00 0.00 0.00 4.02
2730 4688 4.282957 TGCCTCAATTTTTAGCATGGACAA 59.717 37.500 0.00 0.00 0.00 3.18
2731 4689 4.627035 GCCTCAATTTTTAGCATGGACAAC 59.373 41.667 0.00 0.00 0.00 3.32
2732 4690 5.782047 CCTCAATTTTTAGCATGGACAACA 58.218 37.500 0.00 0.00 0.00 3.33
2733 4691 6.222389 CCTCAATTTTTAGCATGGACAACAA 58.778 36.000 0.00 0.00 0.00 2.83
2734 4692 6.875195 CCTCAATTTTTAGCATGGACAACAAT 59.125 34.615 0.00 0.00 0.00 2.71
2735 4693 8.034215 CCTCAATTTTTAGCATGGACAACAATA 58.966 33.333 0.00 0.00 0.00 1.90
2736 4694 9.590451 CTCAATTTTTAGCATGGACAACAATAT 57.410 29.630 0.00 0.00 0.00 1.28
2784 4742 8.996651 ATTATTTTGAATACCCCTACTGAAGG 57.003 34.615 0.00 0.00 46.09 3.46
2792 4750 3.863407 CCTACTGAAGGGCCAGTTC 57.137 57.895 6.18 7.69 44.32 3.01
2793 4751 0.984230 CCTACTGAAGGGCCAGTTCA 59.016 55.000 16.64 16.64 44.32 3.18
2794 4752 1.351017 CCTACTGAAGGGCCAGTTCAA 59.649 52.381 17.82 6.34 44.32 2.69
2795 4753 2.224769 CCTACTGAAGGGCCAGTTCAAA 60.225 50.000 17.82 10.06 44.32 2.69
2796 4754 2.683211 ACTGAAGGGCCAGTTCAAAT 57.317 45.000 17.82 8.75 44.32 2.32
2797 4755 3.806949 ACTGAAGGGCCAGTTCAAATA 57.193 42.857 17.82 0.00 44.32 1.40
2798 4756 4.112634 ACTGAAGGGCCAGTTCAAATAA 57.887 40.909 17.82 0.00 44.32 1.40
2799 4757 4.677182 ACTGAAGGGCCAGTTCAAATAAT 58.323 39.130 17.82 2.80 44.32 1.28
2800 4758 4.706962 ACTGAAGGGCCAGTTCAAATAATC 59.293 41.667 17.82 0.00 44.32 1.75
2801 4759 4.671831 TGAAGGGCCAGTTCAAATAATCA 58.328 39.130 15.57 0.00 30.89 2.57
2802 4760 5.271598 TGAAGGGCCAGTTCAAATAATCAT 58.728 37.500 15.57 0.00 30.89 2.45
2803 4761 5.360714 TGAAGGGCCAGTTCAAATAATCATC 59.639 40.000 15.57 0.00 30.89 2.92
2804 4762 4.870636 AGGGCCAGTTCAAATAATCATCA 58.129 39.130 6.18 0.00 0.00 3.07
2805 4763 5.271598 AGGGCCAGTTCAAATAATCATCAA 58.728 37.500 6.18 0.00 0.00 2.57
2806 4764 5.721000 AGGGCCAGTTCAAATAATCATCAAA 59.279 36.000 6.18 0.00 0.00 2.69
2807 4765 6.384886 AGGGCCAGTTCAAATAATCATCAAAT 59.615 34.615 6.18 0.00 0.00 2.32
2808 4766 7.564660 AGGGCCAGTTCAAATAATCATCAAATA 59.435 33.333 6.18 0.00 0.00 1.40
2809 4767 8.370182 GGGCCAGTTCAAATAATCATCAAATAT 58.630 33.333 4.39 0.00 0.00 1.28
2810 4768 9.768662 GGCCAGTTCAAATAATCATCAAATATT 57.231 29.630 0.00 0.00 0.00 1.28
2832 4790 9.897744 ATATTATTGAACAAGTTAATCCGCATG 57.102 29.630 0.00 0.00 0.00 4.06
2833 4791 5.895636 ATTGAACAAGTTAATCCGCATGA 57.104 34.783 0.00 0.00 0.00 3.07
2834 4792 4.944962 TGAACAAGTTAATCCGCATGAG 57.055 40.909 0.00 0.00 0.00 2.90
2835 4793 4.574892 TGAACAAGTTAATCCGCATGAGA 58.425 39.130 0.00 0.00 0.00 3.27
2836 4794 5.185454 TGAACAAGTTAATCCGCATGAGAT 58.815 37.500 0.00 0.00 0.00 2.75
2837 4795 5.647658 TGAACAAGTTAATCCGCATGAGATT 59.352 36.000 13.84 13.84 37.67 2.40
2838 4796 6.150976 TGAACAAGTTAATCCGCATGAGATTT 59.849 34.615 14.39 3.60 35.59 2.17
2839 4797 6.515272 ACAAGTTAATCCGCATGAGATTTT 57.485 33.333 14.39 3.63 35.59 1.82
2840 4798 7.624360 ACAAGTTAATCCGCATGAGATTTTA 57.376 32.000 14.39 4.01 35.59 1.52
2841 4799 7.472543 ACAAGTTAATCCGCATGAGATTTTAC 58.527 34.615 14.39 12.80 35.59 2.01
2842 4800 7.120579 ACAAGTTAATCCGCATGAGATTTTACA 59.879 33.333 14.39 0.00 35.59 2.41
2843 4801 7.624360 AGTTAATCCGCATGAGATTTTACAA 57.376 32.000 14.39 3.35 35.59 2.41
2844 4802 8.050778 AGTTAATCCGCATGAGATTTTACAAA 57.949 30.769 14.39 3.06 35.59 2.83
2845 4803 8.686334 AGTTAATCCGCATGAGATTTTACAAAT 58.314 29.630 14.39 2.87 35.59 2.32
2846 4804 8.958043 GTTAATCCGCATGAGATTTTACAAATC 58.042 33.333 14.39 1.58 35.59 2.17
2847 4805 6.949352 ATCCGCATGAGATTTTACAAATCT 57.051 33.333 10.81 10.81 39.53 2.40
2848 4806 6.757897 TCCGCATGAGATTTTACAAATCTT 57.242 33.333 12.00 0.00 37.14 2.40
2849 4807 6.785191 TCCGCATGAGATTTTACAAATCTTC 58.215 36.000 12.00 7.20 37.14 2.87
2850 4808 6.599244 TCCGCATGAGATTTTACAAATCTTCT 59.401 34.615 12.00 2.22 37.14 2.85
2851 4809 7.768582 TCCGCATGAGATTTTACAAATCTTCTA 59.231 33.333 12.00 4.47 37.14 2.10
2852 4810 7.852945 CCGCATGAGATTTTACAAATCTTCTAC 59.147 37.037 12.00 2.19 37.14 2.59
2853 4811 8.390354 CGCATGAGATTTTACAAATCTTCTACA 58.610 33.333 12.00 6.90 37.14 2.74
2854 4812 9.713740 GCATGAGATTTTACAAATCTTCTACAG 57.286 33.333 12.00 3.35 37.14 2.74
2857 4815 9.436957 TGAGATTTTACAAATCTTCTACAGACC 57.563 33.333 12.00 0.00 37.14 3.85
2858 4816 8.794335 AGATTTTACAAATCTTCTACAGACCC 57.206 34.615 5.99 0.00 33.47 4.46
2859 4817 7.829706 AGATTTTACAAATCTTCTACAGACCCC 59.170 37.037 5.99 0.00 33.47 4.95
2860 4818 6.697641 TTTACAAATCTTCTACAGACCCCT 57.302 37.500 0.00 0.00 32.83 4.79
2861 4819 7.801893 TTTACAAATCTTCTACAGACCCCTA 57.198 36.000 0.00 0.00 32.83 3.53
2862 4820 7.801893 TTACAAATCTTCTACAGACCCCTAA 57.198 36.000 0.00 0.00 32.83 2.69
2863 4821 6.301169 ACAAATCTTCTACAGACCCCTAAG 57.699 41.667 0.00 0.00 32.83 2.18
2864 4822 6.023603 ACAAATCTTCTACAGACCCCTAAGA 58.976 40.000 0.00 0.00 32.83 2.10
2865 4823 6.674419 ACAAATCTTCTACAGACCCCTAAGAT 59.326 38.462 0.00 0.00 35.71 2.40
2866 4824 7.844779 ACAAATCTTCTACAGACCCCTAAGATA 59.155 37.037 0.00 0.00 33.69 1.98
2867 4825 8.364142 CAAATCTTCTACAGACCCCTAAGATAG 58.636 40.741 0.00 0.00 33.69 2.08
2868 4826 6.843473 TCTTCTACAGACCCCTAAGATAGA 57.157 41.667 0.00 0.00 0.00 1.98
2869 4827 7.222180 TCTTCTACAGACCCCTAAGATAGAA 57.778 40.000 0.00 0.00 0.00 2.10
2870 4828 7.291566 TCTTCTACAGACCCCTAAGATAGAAG 58.708 42.308 10.49 10.49 42.61 2.85
2871 4829 6.843473 TCTACAGACCCCTAAGATAGAAGA 57.157 41.667 0.00 0.00 0.00 2.87
2872 4830 6.603224 TCTACAGACCCCTAAGATAGAAGAC 58.397 44.000 0.00 0.00 0.00 3.01
2873 4831 5.208294 ACAGACCCCTAAGATAGAAGACA 57.792 43.478 0.00 0.00 0.00 3.41
2874 4832 5.205056 ACAGACCCCTAAGATAGAAGACAG 58.795 45.833 0.00 0.00 0.00 3.51
2875 4833 5.044030 ACAGACCCCTAAGATAGAAGACAGA 60.044 44.000 0.00 0.00 0.00 3.41
2876 4834 5.534654 CAGACCCCTAAGATAGAAGACAGAG 59.465 48.000 0.00 0.00 0.00 3.35
2877 4835 5.433712 AGACCCCTAAGATAGAAGACAGAGA 59.566 44.000 0.00 0.00 0.00 3.10
2878 4836 6.068735 AGACCCCTAAGATAGAAGACAGAGAA 60.069 42.308 0.00 0.00 0.00 2.87
2879 4837 6.133356 ACCCCTAAGATAGAAGACAGAGAAG 58.867 44.000 0.00 0.00 0.00 2.85
2880 4838 5.538433 CCCCTAAGATAGAAGACAGAGAAGG 59.462 48.000 0.00 0.00 0.00 3.46
2881 4839 6.369629 CCCTAAGATAGAAGACAGAGAAGGA 58.630 44.000 0.00 0.00 0.00 3.36
2882 4840 6.836527 CCCTAAGATAGAAGACAGAGAAGGAA 59.163 42.308 0.00 0.00 0.00 3.36
2883 4841 7.343316 CCCTAAGATAGAAGACAGAGAAGGAAA 59.657 40.741 0.00 0.00 0.00 3.13
2884 4842 8.194769 CCTAAGATAGAAGACAGAGAAGGAAAC 58.805 40.741 0.00 0.00 0.00 2.78
2885 4843 6.202516 AGATAGAAGACAGAGAAGGAAACG 57.797 41.667 0.00 0.00 0.00 3.60
2886 4844 5.712917 AGATAGAAGACAGAGAAGGAAACGT 59.287 40.000 0.00 0.00 0.00 3.99
2887 4845 4.674281 AGAAGACAGAGAAGGAAACGTT 57.326 40.909 0.00 0.00 0.00 3.99
2888 4846 5.024785 AGAAGACAGAGAAGGAAACGTTT 57.975 39.130 14.57 14.57 0.00 3.60
2889 4847 6.158023 AGAAGACAGAGAAGGAAACGTTTA 57.842 37.500 14.65 0.00 0.00 2.01
2890 4848 6.579865 AGAAGACAGAGAAGGAAACGTTTAA 58.420 36.000 14.65 0.00 0.00 1.52
2891 4849 7.046033 AGAAGACAGAGAAGGAAACGTTTAAA 58.954 34.615 14.65 0.00 0.00 1.52
2892 4850 7.551617 AGAAGACAGAGAAGGAAACGTTTAAAA 59.448 33.333 14.65 0.00 0.00 1.52
2893 4851 7.247929 AGACAGAGAAGGAAACGTTTAAAAG 57.752 36.000 14.65 0.00 0.00 2.27
2894 4852 7.046033 AGACAGAGAAGGAAACGTTTAAAAGA 58.954 34.615 14.65 0.00 0.00 2.52
2895 4853 7.715686 AGACAGAGAAGGAAACGTTTAAAAGAT 59.284 33.333 14.65 0.00 0.00 2.40
2896 4854 8.221965 ACAGAGAAGGAAACGTTTAAAAGATT 57.778 30.769 14.65 2.22 0.00 2.40
2897 4855 8.129211 ACAGAGAAGGAAACGTTTAAAAGATTG 58.871 33.333 14.65 10.54 0.00 2.67
2898 4856 8.342634 CAGAGAAGGAAACGTTTAAAAGATTGA 58.657 33.333 14.65 0.00 0.00 2.57
2899 4857 8.899771 AGAGAAGGAAACGTTTAAAAGATTGAA 58.100 29.630 14.65 0.00 0.00 2.69
2900 4858 9.170584 GAGAAGGAAACGTTTAAAAGATTGAAG 57.829 33.333 14.65 0.00 0.00 3.02
2901 4859 7.648112 AGAAGGAAACGTTTAAAAGATTGAAGC 59.352 33.333 14.65 0.00 0.00 3.86
2902 4860 7.039313 AGGAAACGTTTAAAAGATTGAAGCT 57.961 32.000 14.65 0.00 0.00 3.74
2903 4861 6.918022 AGGAAACGTTTAAAAGATTGAAGCTG 59.082 34.615 14.65 0.00 0.00 4.24
2904 4862 6.915843 GGAAACGTTTAAAAGATTGAAGCTGA 59.084 34.615 14.65 0.00 0.00 4.26
2905 4863 7.113544 GGAAACGTTTAAAAGATTGAAGCTGAG 59.886 37.037 14.65 0.00 0.00 3.35
2906 4864 6.619801 ACGTTTAAAAGATTGAAGCTGAGT 57.380 33.333 8.18 0.00 0.00 3.41
2907 4865 6.430451 ACGTTTAAAAGATTGAAGCTGAGTG 58.570 36.000 8.18 0.00 0.00 3.51
2908 4866 6.260050 ACGTTTAAAAGATTGAAGCTGAGTGA 59.740 34.615 8.18 0.00 0.00 3.41
2909 4867 7.132213 CGTTTAAAAGATTGAAGCTGAGTGAA 58.868 34.615 0.00 0.00 0.00 3.18
2910 4868 7.643764 CGTTTAAAAGATTGAAGCTGAGTGAAA 59.356 33.333 0.00 0.00 0.00 2.69
2911 4869 9.301153 GTTTAAAAGATTGAAGCTGAGTGAAAA 57.699 29.630 0.00 0.00 0.00 2.29
2916 4874 9.635520 AAAGATTGAAGCTGAGTGAAAATAATG 57.364 29.630 0.00 0.00 0.00 1.90
2917 4875 8.571461 AGATTGAAGCTGAGTGAAAATAATGA 57.429 30.769 0.00 0.00 0.00 2.57
2918 4876 8.675504 AGATTGAAGCTGAGTGAAAATAATGAG 58.324 33.333 0.00 0.00 0.00 2.90
2919 4877 7.750229 TTGAAGCTGAGTGAAAATAATGAGT 57.250 32.000 0.00 0.00 0.00 3.41
2920 4878 7.750229 TGAAGCTGAGTGAAAATAATGAGTT 57.250 32.000 0.00 0.00 0.00 3.01
2921 4879 8.846943 TGAAGCTGAGTGAAAATAATGAGTTA 57.153 30.769 0.00 0.00 0.00 2.24
2922 4880 9.453572 TGAAGCTGAGTGAAAATAATGAGTTAT 57.546 29.630 0.00 0.00 31.89 1.89
2923 4881 9.713740 GAAGCTGAGTGAAAATAATGAGTTATG 57.286 33.333 0.00 0.00 31.03 1.90
2924 4882 8.218338 AGCTGAGTGAAAATAATGAGTTATGG 57.782 34.615 0.00 0.00 31.03 2.74
2925 4883 6.914757 GCTGAGTGAAAATAATGAGTTATGGC 59.085 38.462 0.00 0.00 31.03 4.40
2926 4884 7.415541 GCTGAGTGAAAATAATGAGTTATGGCA 60.416 37.037 0.00 0.00 31.03 4.92
2927 4885 8.523915 TGAGTGAAAATAATGAGTTATGGCAT 57.476 30.769 4.88 4.88 31.03 4.40
2928 4886 8.623903 TGAGTGAAAATAATGAGTTATGGCATC 58.376 33.333 1.65 0.00 31.03 3.91
2929 4887 7.642669 AGTGAAAATAATGAGTTATGGCATCG 58.357 34.615 1.65 0.00 31.03 3.84
2930 4888 6.360681 GTGAAAATAATGAGTTATGGCATCGC 59.639 38.462 1.65 0.00 31.03 4.58
2931 4889 4.668576 AATAATGAGTTATGGCATCGCG 57.331 40.909 1.65 0.00 31.03 5.87
2932 4890 1.953559 AATGAGTTATGGCATCGCGT 58.046 45.000 1.65 0.00 0.00 6.01
2933 4891 2.812358 ATGAGTTATGGCATCGCGTA 57.188 45.000 1.65 0.00 0.00 4.42
2934 4892 1.847818 TGAGTTATGGCATCGCGTAC 58.152 50.000 1.65 0.00 0.00 3.67
2935 4893 1.135333 TGAGTTATGGCATCGCGTACA 59.865 47.619 1.65 1.26 0.00 2.90
2936 4894 1.787155 GAGTTATGGCATCGCGTACAG 59.213 52.381 1.65 0.00 0.00 2.74
2937 4895 1.407618 AGTTATGGCATCGCGTACAGA 59.592 47.619 1.65 0.00 0.00 3.41
2938 4896 2.159156 AGTTATGGCATCGCGTACAGAA 60.159 45.455 1.65 2.06 0.00 3.02
2939 4897 2.588027 TATGGCATCGCGTACAGAAA 57.412 45.000 1.65 0.00 0.00 2.52
2940 4898 1.953559 ATGGCATCGCGTACAGAAAT 58.046 45.000 5.77 0.00 0.00 2.17
2941 4899 1.006086 TGGCATCGCGTACAGAAATG 58.994 50.000 5.77 1.07 0.00 2.32
2942 4900 1.286501 GGCATCGCGTACAGAAATGA 58.713 50.000 5.77 0.00 0.00 2.57
2943 4901 1.004927 GGCATCGCGTACAGAAATGAC 60.005 52.381 5.77 0.00 0.00 3.06
2944 4902 1.658596 GCATCGCGTACAGAAATGACA 59.341 47.619 5.77 0.00 0.00 3.58
2945 4903 2.285220 GCATCGCGTACAGAAATGACAT 59.715 45.455 5.77 0.00 0.00 3.06
2946 4904 3.489416 GCATCGCGTACAGAAATGACATA 59.511 43.478 5.77 0.00 0.00 2.29
2947 4905 4.150627 GCATCGCGTACAGAAATGACATAT 59.849 41.667 5.77 0.00 0.00 1.78
2948 4906 5.344933 GCATCGCGTACAGAAATGACATATA 59.655 40.000 5.77 0.00 0.00 0.86
2949 4907 6.128929 GCATCGCGTACAGAAATGACATATAA 60.129 38.462 5.77 0.00 0.00 0.98
2950 4908 7.411912 GCATCGCGTACAGAAATGACATATAAT 60.412 37.037 5.77 0.00 0.00 1.28
2951 4909 7.333288 TCGCGTACAGAAATGACATATAATG 57.667 36.000 5.77 0.00 0.00 1.90
2952 4910 6.009474 CGCGTACAGAAATGACATATAATGC 58.991 40.000 0.00 0.00 0.00 3.56
2953 4911 6.128822 CGCGTACAGAAATGACATATAATGCT 60.129 38.462 0.00 0.00 0.00 3.79
2954 4912 7.011773 GCGTACAGAAATGACATATAATGCTG 58.988 38.462 0.00 0.00 0.00 4.41
2955 4913 7.513132 CGTACAGAAATGACATATAATGCTGG 58.487 38.462 0.00 0.00 0.00 4.85
2956 4914 7.384932 CGTACAGAAATGACATATAATGCTGGA 59.615 37.037 0.00 0.00 0.00 3.86
2957 4915 9.224267 GTACAGAAATGACATATAATGCTGGAT 57.776 33.333 0.00 0.00 0.00 3.41
2958 4916 8.701908 ACAGAAATGACATATAATGCTGGATT 57.298 30.769 0.00 0.00 0.00 3.01
2959 4917 9.139734 ACAGAAATGACATATAATGCTGGATTT 57.860 29.630 0.00 0.00 0.00 2.17
2960 4918 9.976511 CAGAAATGACATATAATGCTGGATTTT 57.023 29.630 0.00 0.00 0.00 1.82
2966 4924 9.797642 TGACATATAATGCTGGATTTTACATCT 57.202 29.630 0.00 0.00 0.00 2.90
2968 4926 9.797642 ACATATAATGCTGGATTTTACATCTGA 57.202 29.630 0.00 0.00 0.00 3.27
2970 4928 5.511234 AATGCTGGATTTTACATCTGAGC 57.489 39.130 0.00 0.00 0.00 4.26
2971 4929 4.226427 TGCTGGATTTTACATCTGAGCT 57.774 40.909 0.00 0.00 0.00 4.09
2972 4930 4.592942 TGCTGGATTTTACATCTGAGCTT 58.407 39.130 0.00 0.00 0.00 3.74
2973 4931 5.744171 TGCTGGATTTTACATCTGAGCTTA 58.256 37.500 0.00 0.00 0.00 3.09
2974 4932 6.179756 TGCTGGATTTTACATCTGAGCTTAA 58.820 36.000 0.00 0.00 0.00 1.85
2975 4933 6.317140 TGCTGGATTTTACATCTGAGCTTAAG 59.683 38.462 0.00 0.00 0.00 1.85
2976 4934 6.317391 GCTGGATTTTACATCTGAGCTTAAGT 59.683 38.462 4.02 0.00 0.00 2.24
2977 4935 7.495934 GCTGGATTTTACATCTGAGCTTAAGTA 59.504 37.037 4.02 0.00 0.00 2.24
2978 4936 9.553064 CTGGATTTTACATCTGAGCTTAAGTAT 57.447 33.333 4.02 0.00 0.00 2.12
3028 4986 9.477484 AACTACATAAGTTACAGAAGTGTCAAG 57.523 33.333 0.00 0.00 46.85 3.02
3029 4987 6.787085 ACATAAGTTACAGAAGTGTCAAGC 57.213 37.500 0.00 0.00 38.19 4.01
3030 4988 6.525629 ACATAAGTTACAGAAGTGTCAAGCT 58.474 36.000 0.00 0.00 38.19 3.74
3031 4989 7.667557 ACATAAGTTACAGAAGTGTCAAGCTA 58.332 34.615 0.00 0.00 38.19 3.32
3032 4990 7.599245 ACATAAGTTACAGAAGTGTCAAGCTAC 59.401 37.037 0.00 0.00 38.19 3.58
3033 4991 5.531122 AGTTACAGAAGTGTCAAGCTACA 57.469 39.130 0.00 0.00 38.19 2.74
3034 4992 5.533482 AGTTACAGAAGTGTCAAGCTACAG 58.467 41.667 0.00 0.00 38.19 2.74
3035 4993 5.302059 AGTTACAGAAGTGTCAAGCTACAGA 59.698 40.000 0.00 0.00 38.19 3.41
3036 4994 4.672587 ACAGAAGTGTCAAGCTACAGAA 57.327 40.909 0.00 0.00 26.76 3.02
3037 4995 4.626042 ACAGAAGTGTCAAGCTACAGAAG 58.374 43.478 0.00 0.00 26.76 2.85
3038 4996 4.100189 ACAGAAGTGTCAAGCTACAGAAGT 59.900 41.667 0.00 0.00 26.76 3.01
3039 4997 4.447054 CAGAAGTGTCAAGCTACAGAAGTG 59.553 45.833 0.00 0.00 0.00 3.16
3040 4998 3.393089 AGTGTCAAGCTACAGAAGTGG 57.607 47.619 0.00 0.00 0.00 4.00
3041 4999 2.037772 AGTGTCAAGCTACAGAAGTGGG 59.962 50.000 0.00 0.00 0.00 4.61
3042 5000 2.047061 TGTCAAGCTACAGAAGTGGGT 58.953 47.619 0.00 0.00 38.69 4.51
3043 5001 3.006537 GTGTCAAGCTACAGAAGTGGGTA 59.993 47.826 0.00 0.00 35.81 3.69
3044 5002 3.838317 TGTCAAGCTACAGAAGTGGGTAT 59.162 43.478 0.00 0.00 35.81 2.73
3045 5003 5.020795 TGTCAAGCTACAGAAGTGGGTATA 58.979 41.667 0.00 0.00 35.81 1.47
3046 5004 5.482526 TGTCAAGCTACAGAAGTGGGTATAA 59.517 40.000 0.00 0.00 35.81 0.98
3047 5005 6.156256 TGTCAAGCTACAGAAGTGGGTATAAT 59.844 38.462 0.00 0.00 35.81 1.28
3048 5006 7.343574 TGTCAAGCTACAGAAGTGGGTATAATA 59.656 37.037 0.00 0.00 35.81 0.98
3049 5007 8.368668 GTCAAGCTACAGAAGTGGGTATAATAT 58.631 37.037 0.00 0.00 35.81 1.28
3050 5008 8.934697 TCAAGCTACAGAAGTGGGTATAATATT 58.065 33.333 0.00 0.00 35.81 1.28
3051 5009 8.993121 CAAGCTACAGAAGTGGGTATAATATTG 58.007 37.037 0.00 0.00 35.81 1.90
3052 5010 8.492415 AGCTACAGAAGTGGGTATAATATTGA 57.508 34.615 0.00 0.00 35.05 2.57
3053 5011 8.934697 AGCTACAGAAGTGGGTATAATATTGAA 58.065 33.333 0.00 0.00 35.05 2.69
3054 5012 8.989980 GCTACAGAAGTGGGTATAATATTGAAC 58.010 37.037 0.00 0.00 0.00 3.18
3055 5013 9.490379 CTACAGAAGTGGGTATAATATTGAACC 57.510 37.037 10.97 10.97 0.00 3.62
3056 5014 8.102484 ACAGAAGTGGGTATAATATTGAACCT 57.898 34.615 16.34 2.21 32.38 3.50
3057 5015 9.220906 ACAGAAGTGGGTATAATATTGAACCTA 57.779 33.333 16.34 10.51 32.38 3.08
3065 5023 9.908152 GGGTATAATATTGAACCTAAAATGTGC 57.092 33.333 16.34 0.00 32.38 4.57
3070 5028 8.721019 AATATTGAACCTAAAATGTGCATTGG 57.279 30.769 0.00 0.00 0.00 3.16
3071 5029 5.543507 TTGAACCTAAAATGTGCATTGGT 57.456 34.783 0.00 0.00 0.00 3.67
3072 5030 4.880759 TGAACCTAAAATGTGCATTGGTG 58.119 39.130 6.28 0.00 28.73 4.17
3082 5040 2.204748 GCATTGGTGCCATGGATGT 58.795 52.632 18.40 0.00 45.76 3.06
3083 5041 1.401761 GCATTGGTGCCATGGATGTA 58.598 50.000 18.40 0.00 45.76 2.29
3084 5042 1.965643 GCATTGGTGCCATGGATGTAT 59.034 47.619 18.40 0.00 45.76 2.29
3085 5043 2.288579 GCATTGGTGCCATGGATGTATG 60.289 50.000 18.40 12.25 45.76 2.39
3086 5044 3.224269 CATTGGTGCCATGGATGTATGA 58.776 45.455 18.40 0.00 0.00 2.15
3087 5045 3.378861 TTGGTGCCATGGATGTATGAA 57.621 42.857 18.40 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
169 171 5.998981 ACATAGGACCAATTTGTTCGTAACA 59.001 36.000 0.00 0.00 40.21 2.41
225 227 7.689299 TGATGGGGTAGTTATGATCCTAAATG 58.311 38.462 1.58 0.00 0.00 2.32
250 252 5.296780 CAGTATCATGACGGTTGGCTAAAAT 59.703 40.000 0.00 0.00 0.00 1.82
259 261 3.447586 ACTAGTGCAGTATCATGACGGTT 59.552 43.478 0.00 0.00 34.98 4.44
308 310 1.593070 CGCGAGCAATGCTGTTCATAC 60.593 52.381 14.48 0.00 39.88 2.39
473 485 0.689745 ATGCATGATTTGGGCAGGCT 60.690 50.000 0.00 0.00 42.90 4.58
636 686 1.376609 GATTGCCGTCCATGGTCCAC 61.377 60.000 12.58 1.31 0.00 4.02
642 692 3.732212 TCATCTAAGATTGCCGTCCATG 58.268 45.455 0.00 0.00 0.00 3.66
643 693 4.630644 ATCATCTAAGATTGCCGTCCAT 57.369 40.909 0.00 0.00 0.00 3.41
644 694 4.129380 CAATCATCTAAGATTGCCGTCCA 58.871 43.478 4.02 0.00 45.68 4.02
645 695 4.739046 CAATCATCTAAGATTGCCGTCC 57.261 45.455 4.02 0.00 45.68 4.79
656 709 2.483013 CCGAGGCCGTTCAATCATCTAA 60.483 50.000 0.00 0.00 0.00 2.10
658 711 0.179073 CCGAGGCCGTTCAATCATCT 60.179 55.000 0.00 0.00 0.00 2.90
661 714 2.435938 GCCGAGGCCGTTCAATCA 60.436 61.111 1.97 0.00 34.56 2.57
844 925 4.878682 GCCGGCCGGTTACGTAGG 62.879 72.222 42.53 16.82 38.78 3.18
919 1026 5.797051 TGTCTTGGTACTGGTGGTATTTAC 58.203 41.667 0.00 0.00 32.56 2.01
922 1029 5.250774 AGAATGTCTTGGTACTGGTGGTATT 59.749 40.000 0.00 0.00 32.56 1.89
961 1078 5.354234 ACACGATCGAATTAAGCTCCAATTT 59.646 36.000 24.34 0.00 0.00 1.82
1236 1371 1.617740 GCAGCACAAAGAATTACGGC 58.382 50.000 0.00 0.00 0.00 5.68
1237 1372 1.539388 TGGCAGCACAAAGAATTACGG 59.461 47.619 0.00 0.00 0.00 4.02
1246 1390 3.016031 ACATTATCGATGGCAGCACAAA 58.984 40.909 8.54 0.00 40.21 2.83
1247 1391 2.613595 GACATTATCGATGGCAGCACAA 59.386 45.455 8.54 0.00 43.75 3.33
1248 1392 2.212652 GACATTATCGATGGCAGCACA 58.787 47.619 8.54 0.00 43.75 4.57
1249 1393 2.957576 GACATTATCGATGGCAGCAC 57.042 50.000 8.54 0.00 43.75 4.40
1312 1472 2.093869 GCATCACAACCCTGCAATGAAT 60.094 45.455 0.00 0.00 35.96 2.57
1364 1572 4.373116 GCGTCCTTCTCCGCCACA 62.373 66.667 0.00 0.00 43.96 4.17
1970 2200 0.031721 AGAACTCGCCGTCGAACTTT 59.968 50.000 0.00 0.00 44.98 2.66
2087 2317 7.568199 AGGCTAATAATCAACAAACGCTAAT 57.432 32.000 0.00 0.00 0.00 1.73
2088 2318 6.995511 AGGCTAATAATCAACAAACGCTAA 57.004 33.333 0.00 0.00 0.00 3.09
2089 2319 6.373216 ACAAGGCTAATAATCAACAAACGCTA 59.627 34.615 0.00 0.00 0.00 4.26
2090 2320 5.183140 ACAAGGCTAATAATCAACAAACGCT 59.817 36.000 0.00 0.00 0.00 5.07
2145 4073 3.567164 ACTGGATAATACGTACTCCGGTG 59.433 47.826 24.04 0.00 43.97 4.94
2146 4074 3.825328 ACTGGATAATACGTACTCCGGT 58.175 45.455 21.16 21.16 41.51 5.28
2147 4075 4.070716 AGACTGGATAATACGTACTCCGG 58.929 47.826 20.22 20.22 42.24 5.14
2148 4076 5.931146 ACTAGACTGGATAATACGTACTCCG 59.069 44.000 0.00 4.59 44.03 4.63
2149 4077 6.709846 ACACTAGACTGGATAATACGTACTCC 59.290 42.308 0.00 5.58 0.00 3.85
2150 4078 7.440556 TCACACTAGACTGGATAATACGTACTC 59.559 40.741 0.00 0.00 0.00 2.59
2151 4079 7.278135 TCACACTAGACTGGATAATACGTACT 58.722 38.462 0.00 0.00 0.00 2.73
2152 4080 7.488187 TCACACTAGACTGGATAATACGTAC 57.512 40.000 0.00 0.00 0.00 3.67
2153 4081 8.687292 AATCACACTAGACTGGATAATACGTA 57.313 34.615 0.00 0.00 0.00 3.57
2154 4082 7.584122 AATCACACTAGACTGGATAATACGT 57.416 36.000 0.00 0.00 0.00 3.57
2159 4087 9.599866 CACAATAAATCACACTAGACTGGATAA 57.400 33.333 0.00 0.00 0.00 1.75
2160 4088 8.977412 TCACAATAAATCACACTAGACTGGATA 58.023 33.333 0.00 0.00 0.00 2.59
2166 4094 8.268850 ACCATTCACAATAAATCACACTAGAC 57.731 34.615 0.00 0.00 0.00 2.59
2213 4150 0.698238 TAGCTGCCCATGGACTTTGT 59.302 50.000 15.22 0.00 0.00 2.83
2261 4215 1.333169 GCGTCACACACAATGACACAG 60.333 52.381 6.01 0.00 45.64 3.66
2307 4265 2.174639 AGGCCCATTATGTTTCCGATGA 59.825 45.455 0.00 0.00 0.00 2.92
2349 4307 2.809601 GCAGGTCCGTGCGTGTAG 60.810 66.667 0.00 0.00 32.74 2.74
2359 4317 4.767255 CTCCGCCACTGCAGGTCC 62.767 72.222 19.93 4.16 37.32 4.46
2362 4320 3.099211 ATAGCTCCGCCACTGCAGG 62.099 63.158 19.93 2.55 37.32 4.85
2363 4321 1.886313 CATAGCTCCGCCACTGCAG 60.886 63.158 13.48 13.48 37.32 4.41
2364 4322 2.184020 AACATAGCTCCGCCACTGCA 62.184 55.000 0.00 0.00 37.32 4.41
2365 4323 1.450312 AACATAGCTCCGCCACTGC 60.450 57.895 0.00 0.00 0.00 4.40
2366 4324 0.391661 ACAACATAGCTCCGCCACTG 60.392 55.000 0.00 0.00 0.00 3.66
2367 4325 1.191535 TACAACATAGCTCCGCCACT 58.808 50.000 0.00 0.00 0.00 4.00
2368 4326 1.933853 CTTACAACATAGCTCCGCCAC 59.066 52.381 0.00 0.00 0.00 5.01
2369 4327 1.742411 GCTTACAACATAGCTCCGCCA 60.742 52.381 0.00 0.00 34.57 5.69
2370 4328 0.938008 GCTTACAACATAGCTCCGCC 59.062 55.000 0.00 0.00 34.57 6.13
2371 4329 1.941325 AGCTTACAACATAGCTCCGC 58.059 50.000 0.00 0.00 44.05 5.54
2372 4330 4.041740 TGTAGCTTACAACATAGCTCCG 57.958 45.455 0.00 0.00 44.05 4.63
2373 4331 4.372656 CCTGTAGCTTACAACATAGCTCC 58.627 47.826 0.00 0.00 44.05 4.70
2374 4332 4.372656 CCCTGTAGCTTACAACATAGCTC 58.627 47.826 0.00 0.00 44.05 4.09
2376 4334 3.467803 CCCCTGTAGCTTACAACATAGC 58.532 50.000 0.00 0.00 38.38 2.97
2377 4335 3.467803 GCCCCTGTAGCTTACAACATAG 58.532 50.000 0.00 0.00 38.38 2.23
2378 4336 2.171870 GGCCCCTGTAGCTTACAACATA 59.828 50.000 0.00 0.00 38.38 2.29
2379 4337 1.064685 GGCCCCTGTAGCTTACAACAT 60.065 52.381 0.00 0.00 38.38 2.71
2380 4338 0.326927 GGCCCCTGTAGCTTACAACA 59.673 55.000 0.00 0.00 38.38 3.33
2381 4339 0.326927 TGGCCCCTGTAGCTTACAAC 59.673 55.000 0.00 0.00 38.38 3.32
2382 4340 1.064758 CATGGCCCCTGTAGCTTACAA 60.065 52.381 0.00 0.00 38.38 2.41
2383 4341 0.546122 CATGGCCCCTGTAGCTTACA 59.454 55.000 0.00 0.00 37.13 2.41
2384 4342 0.819666 GCATGGCCCCTGTAGCTTAC 60.820 60.000 0.00 0.00 0.00 2.34
2385 4343 1.531748 GCATGGCCCCTGTAGCTTA 59.468 57.895 0.00 0.00 0.00 3.09
2386 4344 2.276740 GCATGGCCCCTGTAGCTT 59.723 61.111 0.00 0.00 0.00 3.74
2387 4345 3.813724 GGCATGGCCCCTGTAGCT 61.814 66.667 8.35 0.00 44.06 3.32
2405 4363 4.726304 TACAAAAGCGGGGCGGGG 62.726 66.667 0.00 0.00 0.00 5.73
2406 4364 1.600511 ATTTACAAAAGCGGGGCGGG 61.601 55.000 0.00 0.00 0.00 6.13
2407 4365 1.096416 TATTTACAAAAGCGGGGCGG 58.904 50.000 0.00 0.00 0.00 6.13
2408 4366 2.098443 ACATATTTACAAAAGCGGGGCG 59.902 45.455 0.00 0.00 0.00 6.13
2409 4367 3.129638 TCACATATTTACAAAAGCGGGGC 59.870 43.478 0.00 0.00 0.00 5.80
2410 4368 4.974368 TCACATATTTACAAAAGCGGGG 57.026 40.909 0.00 0.00 0.00 5.73
2411 4369 5.124776 TCCTTCACATATTTACAAAAGCGGG 59.875 40.000 0.00 0.00 0.00 6.13
2412 4370 6.189677 TCCTTCACATATTTACAAAAGCGG 57.810 37.500 0.00 0.00 0.00 5.52
2413 4371 8.687824 AATTCCTTCACATATTTACAAAAGCG 57.312 30.769 0.00 0.00 0.00 4.68
2443 4401 7.561356 ACTTTTCCTCATCTTTCTCTCCAAAAA 59.439 33.333 0.00 0.00 0.00 1.94
2444 4402 7.062957 ACTTTTCCTCATCTTTCTCTCCAAAA 58.937 34.615 0.00 0.00 0.00 2.44
2445 4403 6.605119 ACTTTTCCTCATCTTTCTCTCCAAA 58.395 36.000 0.00 0.00 0.00 3.28
2446 4404 6.192970 ACTTTTCCTCATCTTTCTCTCCAA 57.807 37.500 0.00 0.00 0.00 3.53
2447 4405 5.832539 ACTTTTCCTCATCTTTCTCTCCA 57.167 39.130 0.00 0.00 0.00 3.86
2448 4406 7.093509 ACTCTACTTTTCCTCATCTTTCTCTCC 60.094 40.741 0.00 0.00 0.00 3.71
2449 4407 7.836842 ACTCTACTTTTCCTCATCTTTCTCTC 58.163 38.462 0.00 0.00 0.00 3.20
2450 4408 7.790782 ACTCTACTTTTCCTCATCTTTCTCT 57.209 36.000 0.00 0.00 0.00 3.10
2451 4409 8.840833 AAACTCTACTTTTCCTCATCTTTCTC 57.159 34.615 0.00 0.00 0.00 2.87
2452 4410 9.634021 AAAAACTCTACTTTTCCTCATCTTTCT 57.366 29.630 0.00 0.00 0.00 2.52
2476 4434 0.747852 GACGTTTGGGAGGGCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
2477 4435 1.110518 GGACGTTTGGGAGGGCAAAA 61.111 55.000 0.00 0.00 0.00 2.44
2478 4436 1.529713 GGACGTTTGGGAGGGCAAA 60.530 57.895 0.00 0.00 0.00 3.68
2479 4437 2.114411 GGACGTTTGGGAGGGCAA 59.886 61.111 0.00 0.00 0.00 4.52
2480 4438 3.172106 TGGACGTTTGGGAGGGCA 61.172 61.111 0.00 0.00 0.00 5.36
2481 4439 2.671963 GTGGACGTTTGGGAGGGC 60.672 66.667 0.00 0.00 0.00 5.19
2482 4440 0.251165 AATGTGGACGTTTGGGAGGG 60.251 55.000 0.00 0.00 0.00 4.30
2483 4441 1.616159 AAATGTGGACGTTTGGGAGG 58.384 50.000 0.00 0.00 34.11 4.30
2484 4442 3.756434 ACATAAATGTGGACGTTTGGGAG 59.244 43.478 7.15 0.00 40.03 4.30
2485 4443 3.757270 ACATAAATGTGGACGTTTGGGA 58.243 40.909 7.15 0.00 40.03 4.37
2486 4444 4.513198 AACATAAATGTGGACGTTTGGG 57.487 40.909 7.15 2.60 41.61 4.12
2487 4445 5.820926 CAAACATAAATGTGGACGTTTGG 57.179 39.130 7.15 2.90 41.61 3.28
2488 4446 5.285651 ACCAAACATAAATGTGGACGTTTG 58.714 37.500 7.15 0.00 41.61 2.93
2489 4447 5.508320 GGACCAAACATAAATGTGGACGTTT 60.508 40.000 6.60 2.68 41.61 3.60
2490 4448 4.022676 GGACCAAACATAAATGTGGACGTT 60.023 41.667 6.60 0.00 41.61 3.99
2491 4449 3.504520 GGACCAAACATAAATGTGGACGT 59.495 43.478 6.60 0.00 41.61 4.34
2492 4450 3.119637 GGGACCAAACATAAATGTGGACG 60.120 47.826 6.60 0.00 41.61 4.79
2493 4451 4.450082 GGGACCAAACATAAATGTGGAC 57.550 45.455 6.60 1.49 41.61 4.02
2513 4471 2.093500 GCTAGGCAATTTCTTTTGGGGG 60.093 50.000 0.00 0.00 0.00 5.40
2514 4472 2.833943 AGCTAGGCAATTTCTTTTGGGG 59.166 45.455 0.00 0.00 0.00 4.96
2515 4473 3.118992 GGAGCTAGGCAATTTCTTTTGGG 60.119 47.826 0.00 0.00 0.00 4.12
2516 4474 3.428045 CGGAGCTAGGCAATTTCTTTTGG 60.428 47.826 0.00 0.00 0.00 3.28
2517 4475 3.762779 CGGAGCTAGGCAATTTCTTTTG 58.237 45.455 0.00 0.00 0.00 2.44
2539 4497 1.888436 TAAGAGCAGGTCCGCACTGG 61.888 60.000 8.15 0.00 36.48 4.00
2540 4498 0.737715 GTAAGAGCAGGTCCGCACTG 60.738 60.000 8.15 0.00 38.95 3.66
2541 4499 1.592223 GTAAGAGCAGGTCCGCACT 59.408 57.895 8.15 4.60 34.01 4.40
2542 4500 1.805945 CGTAAGAGCAGGTCCGCAC 60.806 63.158 8.15 2.56 43.02 5.34
2543 4501 2.571757 CGTAAGAGCAGGTCCGCA 59.428 61.111 8.15 0.00 43.02 5.69
2544 4502 2.017559 ATCCGTAAGAGCAGGTCCGC 62.018 60.000 0.00 0.00 43.02 5.54
2545 4503 0.460311 AATCCGTAAGAGCAGGTCCG 59.540 55.000 0.00 0.00 43.02 4.79
2546 4504 1.480954 TGAATCCGTAAGAGCAGGTCC 59.519 52.381 0.00 0.00 43.02 4.46
2547 4505 2.930682 GTTGAATCCGTAAGAGCAGGTC 59.069 50.000 0.00 0.00 43.02 3.85
2548 4506 2.674177 CGTTGAATCCGTAAGAGCAGGT 60.674 50.000 0.00 0.00 43.02 4.00
2549 4507 1.927174 CGTTGAATCCGTAAGAGCAGG 59.073 52.381 0.00 0.00 43.02 4.85
2550 4508 1.927174 CCGTTGAATCCGTAAGAGCAG 59.073 52.381 0.00 0.00 43.02 4.24
2551 4509 1.546923 TCCGTTGAATCCGTAAGAGCA 59.453 47.619 0.00 0.00 43.02 4.26
2552 4510 2.288961 TCCGTTGAATCCGTAAGAGC 57.711 50.000 0.00 0.00 43.02 4.09
2553 4511 3.001330 GCATTCCGTTGAATCCGTAAGAG 59.999 47.826 0.00 0.00 39.20 2.85
2554 4512 2.933906 GCATTCCGTTGAATCCGTAAGA 59.066 45.455 0.00 0.00 39.20 2.10
2555 4513 2.675844 TGCATTCCGTTGAATCCGTAAG 59.324 45.455 0.00 0.00 39.20 2.34
2556 4514 2.701107 TGCATTCCGTTGAATCCGTAA 58.299 42.857 0.00 0.00 39.20 3.18
2557 4515 2.388310 TGCATTCCGTTGAATCCGTA 57.612 45.000 0.00 0.00 39.20 4.02
2558 4516 1.529226 TTGCATTCCGTTGAATCCGT 58.471 45.000 0.00 0.00 39.20 4.69
2559 4517 2.849880 ATTGCATTCCGTTGAATCCG 57.150 45.000 0.00 0.00 39.20 4.18
2560 4518 3.618150 CCAAATTGCATTCCGTTGAATCC 59.382 43.478 0.00 0.00 39.20 3.01
2561 4519 4.091800 CACCAAATTGCATTCCGTTGAATC 59.908 41.667 0.00 0.00 39.20 2.52
2562 4520 3.995705 CACCAAATTGCATTCCGTTGAAT 59.004 39.130 0.00 0.00 41.96 2.57
2563 4521 3.388308 CACCAAATTGCATTCCGTTGAA 58.612 40.909 0.00 0.00 34.33 2.69
2564 4522 2.288702 CCACCAAATTGCATTCCGTTGA 60.289 45.455 0.00 0.00 0.00 3.18
2565 4523 2.067766 CCACCAAATTGCATTCCGTTG 58.932 47.619 0.00 0.00 0.00 4.10
2566 4524 1.607767 GCCACCAAATTGCATTCCGTT 60.608 47.619 0.00 0.00 0.00 4.44
2567 4525 0.037419 GCCACCAAATTGCATTCCGT 60.037 50.000 0.00 0.00 0.00 4.69
2568 4526 0.037512 TGCCACCAAATTGCATTCCG 60.038 50.000 0.00 0.00 0.00 4.30
2569 4527 1.002315 AGTGCCACCAAATTGCATTCC 59.998 47.619 0.00 0.00 37.34 3.01
2570 4528 2.460757 AGTGCCACCAAATTGCATTC 57.539 45.000 0.00 0.00 37.34 2.67
2571 4529 2.369532 AGAAGTGCCACCAAATTGCATT 59.630 40.909 0.00 0.00 37.34 3.56
2572 4530 1.972795 AGAAGTGCCACCAAATTGCAT 59.027 42.857 0.00 0.00 37.34 3.96
2573 4531 1.412079 AGAAGTGCCACCAAATTGCA 58.588 45.000 0.00 0.00 0.00 4.08
2574 4532 2.531522 AAGAAGTGCCACCAAATTGC 57.468 45.000 0.00 0.00 0.00 3.56
2575 4533 6.222389 TCAATAAAGAAGTGCCACCAAATTG 58.778 36.000 0.00 0.00 0.00 2.32
2576 4534 6.418057 TCAATAAAGAAGTGCCACCAAATT 57.582 33.333 0.00 0.00 0.00 1.82
2577 4535 6.418057 TTCAATAAAGAAGTGCCACCAAAT 57.582 33.333 0.00 0.00 0.00 2.32
2578 4536 5.860941 TTCAATAAAGAAGTGCCACCAAA 57.139 34.783 0.00 0.00 0.00 3.28
2579 4537 5.860941 TTTCAATAAAGAAGTGCCACCAA 57.139 34.783 0.00 0.00 0.00 3.67
2580 4538 5.362430 AGTTTTCAATAAAGAAGTGCCACCA 59.638 36.000 0.00 0.00 0.00 4.17
2581 4539 5.842907 AGTTTTCAATAAAGAAGTGCCACC 58.157 37.500 0.00 0.00 0.00 4.61
2582 4540 7.871853 TCTAGTTTTCAATAAAGAAGTGCCAC 58.128 34.615 0.00 0.00 0.00 5.01
2583 4541 8.349983 GTTCTAGTTTTCAATAAAGAAGTGCCA 58.650 33.333 0.00 0.00 0.00 4.92
2584 4542 8.349983 TGTTCTAGTTTTCAATAAAGAAGTGCC 58.650 33.333 0.00 0.00 0.00 5.01
2585 4543 9.899226 ATGTTCTAGTTTTCAATAAAGAAGTGC 57.101 29.630 0.00 0.00 0.00 4.40
2591 4549 9.346725 GCCTTGATGTTCTAGTTTTCAATAAAG 57.653 33.333 0.00 0.00 0.00 1.85
2592 4550 8.020819 CGCCTTGATGTTCTAGTTTTCAATAAA 58.979 33.333 0.00 0.00 0.00 1.40
2593 4551 7.526608 CGCCTTGATGTTCTAGTTTTCAATAA 58.473 34.615 0.00 0.00 0.00 1.40
2594 4552 6.403200 GCGCCTTGATGTTCTAGTTTTCAATA 60.403 38.462 0.00 0.00 0.00 1.90
2595 4553 5.619981 GCGCCTTGATGTTCTAGTTTTCAAT 60.620 40.000 0.00 0.00 0.00 2.57
2596 4554 4.320202 GCGCCTTGATGTTCTAGTTTTCAA 60.320 41.667 0.00 0.00 0.00 2.69
2597 4555 3.188460 GCGCCTTGATGTTCTAGTTTTCA 59.812 43.478 0.00 0.00 0.00 2.69
2598 4556 3.725010 CGCGCCTTGATGTTCTAGTTTTC 60.725 47.826 0.00 0.00 0.00 2.29
2599 4557 2.159627 CGCGCCTTGATGTTCTAGTTTT 59.840 45.455 0.00 0.00 0.00 2.43
2600 4558 1.732259 CGCGCCTTGATGTTCTAGTTT 59.268 47.619 0.00 0.00 0.00 2.66
2601 4559 1.359848 CGCGCCTTGATGTTCTAGTT 58.640 50.000 0.00 0.00 0.00 2.24
2602 4560 1.084370 GCGCGCCTTGATGTTCTAGT 61.084 55.000 23.24 0.00 0.00 2.57
2603 4561 1.638467 GCGCGCCTTGATGTTCTAG 59.362 57.895 23.24 0.00 0.00 2.43
2604 4562 2.164663 CGCGCGCCTTGATGTTCTA 61.165 57.895 27.72 0.00 0.00 2.10
2605 4563 3.490759 CGCGCGCCTTGATGTTCT 61.491 61.111 27.72 0.00 0.00 3.01
2606 4564 3.308878 AACGCGCGCCTTGATGTTC 62.309 57.895 32.58 0.00 0.00 3.18
2607 4565 3.353836 AACGCGCGCCTTGATGTT 61.354 55.556 32.58 19.36 0.00 2.71
2608 4566 4.088762 CAACGCGCGCCTTGATGT 62.089 61.111 30.70 17.81 0.00 3.06
2626 4584 2.086869 CATTAATATGGGAGGGCGCAG 58.913 52.381 10.83 0.00 40.53 5.18
2627 4585 1.271871 CCATTAATATGGGAGGGCGCA 60.272 52.381 10.83 0.00 46.43 6.09
2628 4586 1.463674 CCATTAATATGGGAGGGCGC 58.536 55.000 0.00 0.00 46.43 6.53
2683 4641 9.524106 GCATTCAATTCATATCTTGATTGACAA 57.476 29.630 13.24 0.00 35.95 3.18
2684 4642 8.139350 GGCATTCAATTCATATCTTGATTGACA 58.861 33.333 13.24 0.00 39.15 3.58
2685 4643 8.358148 AGGCATTCAATTCATATCTTGATTGAC 58.642 33.333 13.24 11.52 39.42 3.18
2686 4644 8.473358 AGGCATTCAATTCATATCTTGATTGA 57.527 30.769 13.24 0.00 35.95 2.57
2687 4645 8.357402 TGAGGCATTCAATTCATATCTTGATTG 58.643 33.333 0.00 0.00 36.52 2.67
2688 4646 8.473358 TGAGGCATTCAATTCATATCTTGATT 57.527 30.769 0.00 0.00 30.72 2.57
2689 4647 8.473358 TTGAGGCATTCAATTCATATCTTGAT 57.527 30.769 0.00 0.00 40.82 2.57
2690 4648 7.885009 TTGAGGCATTCAATTCATATCTTGA 57.115 32.000 0.00 0.00 40.82 3.02
2703 4661 5.187381 TCCATGCTAAAAATTGAGGCATTCA 59.813 36.000 0.00 0.00 40.93 2.57
2704 4662 5.521372 GTCCATGCTAAAAATTGAGGCATTC 59.479 40.000 0.00 0.00 40.93 2.67
2705 4663 5.046448 TGTCCATGCTAAAAATTGAGGCATT 60.046 36.000 0.00 0.00 40.93 3.56
2706 4664 4.467082 TGTCCATGCTAAAAATTGAGGCAT 59.533 37.500 0.00 0.00 43.19 4.40
2707 4665 3.831333 TGTCCATGCTAAAAATTGAGGCA 59.169 39.130 0.00 0.00 37.32 4.75
2708 4666 4.454728 TGTCCATGCTAAAAATTGAGGC 57.545 40.909 0.00 0.00 0.00 4.70
2709 4667 5.782047 TGTTGTCCATGCTAAAAATTGAGG 58.218 37.500 0.00 0.00 0.00 3.86
2710 4668 7.894376 ATTGTTGTCCATGCTAAAAATTGAG 57.106 32.000 0.00 0.00 0.00 3.02
2758 4716 9.421399 CCTTCAGTAGGGGTATTCAAAATAATT 57.579 33.333 0.00 0.00 40.67 1.40
2759 4717 8.996651 CCTTCAGTAGGGGTATTCAAAATAAT 57.003 34.615 0.00 0.00 40.67 1.28
2774 4732 0.984230 TGAACTGGCCCTTCAGTAGG 59.016 55.000 0.00 0.00 46.17 3.18
2775 4733 2.859165 TTGAACTGGCCCTTCAGTAG 57.141 50.000 11.67 0.00 46.17 2.57
2776 4734 3.806949 ATTTGAACTGGCCCTTCAGTA 57.193 42.857 11.67 6.41 46.17 2.74
2778 4736 4.706476 TGATTATTTGAACTGGCCCTTCAG 59.294 41.667 11.67 0.00 40.40 3.02
2779 4737 4.671831 TGATTATTTGAACTGGCCCTTCA 58.328 39.130 0.00 4.34 0.00 3.02
2780 4738 5.360714 TGATGATTATTTGAACTGGCCCTTC 59.639 40.000 0.00 1.18 0.00 3.46
2781 4739 5.271598 TGATGATTATTTGAACTGGCCCTT 58.728 37.500 0.00 0.00 0.00 3.95
2782 4740 4.870636 TGATGATTATTTGAACTGGCCCT 58.129 39.130 0.00 0.00 0.00 5.19
2783 4741 5.596836 TTGATGATTATTTGAACTGGCCC 57.403 39.130 0.00 0.00 0.00 5.80
2784 4742 9.768662 AATATTTGATGATTATTTGAACTGGCC 57.231 29.630 0.00 0.00 0.00 5.36
2806 4764 9.897744 CATGCGGATTAACTTGTTCAATAATAT 57.102 29.630 0.00 0.00 0.00 1.28
2807 4765 9.114952 TCATGCGGATTAACTTGTTCAATAATA 57.885 29.630 0.00 0.00 0.00 0.98
2808 4766 7.995289 TCATGCGGATTAACTTGTTCAATAAT 58.005 30.769 0.00 0.00 0.00 1.28
2809 4767 7.335673 TCTCATGCGGATTAACTTGTTCAATAA 59.664 33.333 0.00 0.00 0.00 1.40
2810 4768 6.821160 TCTCATGCGGATTAACTTGTTCAATA 59.179 34.615 0.00 0.00 0.00 1.90
2811 4769 5.647658 TCTCATGCGGATTAACTTGTTCAAT 59.352 36.000 0.00 0.00 0.00 2.57
2812 4770 5.000591 TCTCATGCGGATTAACTTGTTCAA 58.999 37.500 0.00 0.00 0.00 2.69
2813 4771 4.574892 TCTCATGCGGATTAACTTGTTCA 58.425 39.130 0.00 0.00 0.00 3.18
2814 4772 5.741388 ATCTCATGCGGATTAACTTGTTC 57.259 39.130 0.00 0.00 0.00 3.18
2815 4773 6.515272 AAATCTCATGCGGATTAACTTGTT 57.485 33.333 12.01 0.00 33.65 2.83
2816 4774 6.515272 AAAATCTCATGCGGATTAACTTGT 57.485 33.333 12.01 0.00 33.65 3.16
2817 4775 7.471721 TGTAAAATCTCATGCGGATTAACTTG 58.528 34.615 12.01 0.00 33.65 3.16
2818 4776 7.624360 TGTAAAATCTCATGCGGATTAACTT 57.376 32.000 12.01 7.53 33.65 2.66
2819 4777 7.624360 TTGTAAAATCTCATGCGGATTAACT 57.376 32.000 12.01 5.52 33.65 2.24
2820 4778 8.856490 ATTTGTAAAATCTCATGCGGATTAAC 57.144 30.769 12.01 12.82 33.65 2.01
2821 4779 8.902806 AGATTTGTAAAATCTCATGCGGATTAA 58.097 29.630 8.99 5.54 31.78 1.40
2822 4780 8.450578 AGATTTGTAAAATCTCATGCGGATTA 57.549 30.769 8.99 0.00 31.78 1.75
2823 4781 7.338800 AGATTTGTAAAATCTCATGCGGATT 57.661 32.000 8.99 7.58 31.78 3.01
2824 4782 6.949352 AGATTTGTAAAATCTCATGCGGAT 57.051 33.333 8.99 0.00 31.78 4.18
2825 4783 6.599244 AGAAGATTTGTAAAATCTCATGCGGA 59.401 34.615 13.97 0.00 36.07 5.54
2826 4784 6.789262 AGAAGATTTGTAAAATCTCATGCGG 58.211 36.000 13.97 0.00 36.07 5.69
2827 4785 8.390354 TGTAGAAGATTTGTAAAATCTCATGCG 58.610 33.333 13.97 0.00 36.07 4.73
2828 4786 9.713740 CTGTAGAAGATTTGTAAAATCTCATGC 57.286 33.333 13.97 10.29 36.07 4.06
2831 4789 9.436957 GGTCTGTAGAAGATTTGTAAAATCTCA 57.563 33.333 13.97 8.11 37.23 3.27
2832 4790 8.884726 GGGTCTGTAGAAGATTTGTAAAATCTC 58.115 37.037 13.97 8.90 37.23 2.75
2833 4791 7.829706 GGGGTCTGTAGAAGATTTGTAAAATCT 59.170 37.037 8.99 8.99 37.23 2.40
2834 4792 7.829706 AGGGGTCTGTAGAAGATTTGTAAAATC 59.170 37.037 4.84 4.84 37.23 2.17
2835 4793 7.699878 AGGGGTCTGTAGAAGATTTGTAAAAT 58.300 34.615 0.00 0.00 37.23 1.82
2836 4794 7.086685 AGGGGTCTGTAGAAGATTTGTAAAA 57.913 36.000 0.00 0.00 37.23 1.52
2837 4795 6.697641 AGGGGTCTGTAGAAGATTTGTAAA 57.302 37.500 0.00 0.00 37.23 2.01
2838 4796 7.676893 TCTTAGGGGTCTGTAGAAGATTTGTAA 59.323 37.037 0.00 0.00 37.23 2.41
2839 4797 7.186972 TCTTAGGGGTCTGTAGAAGATTTGTA 58.813 38.462 0.00 0.00 37.23 2.41
2840 4798 6.023603 TCTTAGGGGTCTGTAGAAGATTTGT 58.976 40.000 0.00 0.00 37.23 2.83
2841 4799 6.546428 TCTTAGGGGTCTGTAGAAGATTTG 57.454 41.667 0.00 0.00 37.23 2.32
2842 4800 8.290277 TCTATCTTAGGGGTCTGTAGAAGATTT 58.710 37.037 0.00 0.00 37.23 2.17
2843 4801 7.827787 TCTATCTTAGGGGTCTGTAGAAGATT 58.172 38.462 0.00 0.00 37.23 2.40
2844 4802 7.409408 TCTATCTTAGGGGTCTGTAGAAGAT 57.591 40.000 0.00 0.00 37.23 2.40
2845 4803 6.843473 TCTATCTTAGGGGTCTGTAGAAGA 57.157 41.667 0.00 0.00 0.00 2.87
2846 4804 7.229907 GTCTTCTATCTTAGGGGTCTGTAGAAG 59.770 44.444 11.17 11.17 42.15 2.85
2847 4805 7.061688 GTCTTCTATCTTAGGGGTCTGTAGAA 58.938 42.308 0.00 0.00 0.00 2.10
2848 4806 6.159928 TGTCTTCTATCTTAGGGGTCTGTAGA 59.840 42.308 0.00 0.00 0.00 2.59
2849 4807 6.366340 TGTCTTCTATCTTAGGGGTCTGTAG 58.634 44.000 0.00 0.00 0.00 2.74
2850 4808 6.159928 TCTGTCTTCTATCTTAGGGGTCTGTA 59.840 42.308 0.00 0.00 0.00 2.74
2851 4809 5.044030 TCTGTCTTCTATCTTAGGGGTCTGT 60.044 44.000 0.00 0.00 0.00 3.41
2852 4810 5.450453 TCTGTCTTCTATCTTAGGGGTCTG 58.550 45.833 0.00 0.00 0.00 3.51
2853 4811 5.433712 TCTCTGTCTTCTATCTTAGGGGTCT 59.566 44.000 0.00 0.00 0.00 3.85
2854 4812 5.697067 TCTCTGTCTTCTATCTTAGGGGTC 58.303 45.833 0.00 0.00 0.00 4.46
2855 4813 5.735733 TCTCTGTCTTCTATCTTAGGGGT 57.264 43.478 0.00 0.00 0.00 4.95
2856 4814 5.538433 CCTTCTCTGTCTTCTATCTTAGGGG 59.462 48.000 0.00 0.00 0.00 4.79
2857 4815 6.369629 TCCTTCTCTGTCTTCTATCTTAGGG 58.630 44.000 0.00 0.00 0.00 3.53
2858 4816 7.889873 TTCCTTCTCTGTCTTCTATCTTAGG 57.110 40.000 0.00 0.00 0.00 2.69
2859 4817 7.913297 CGTTTCCTTCTCTGTCTTCTATCTTAG 59.087 40.741 0.00 0.00 0.00 2.18
2860 4818 7.393796 ACGTTTCCTTCTCTGTCTTCTATCTTA 59.606 37.037 0.00 0.00 0.00 2.10
2861 4819 6.209788 ACGTTTCCTTCTCTGTCTTCTATCTT 59.790 38.462 0.00 0.00 0.00 2.40
2862 4820 5.712917 ACGTTTCCTTCTCTGTCTTCTATCT 59.287 40.000 0.00 0.00 0.00 1.98
2863 4821 5.956642 ACGTTTCCTTCTCTGTCTTCTATC 58.043 41.667 0.00 0.00 0.00 2.08
2864 4822 5.986501 ACGTTTCCTTCTCTGTCTTCTAT 57.013 39.130 0.00 0.00 0.00 1.98
2865 4823 5.786264 AACGTTTCCTTCTCTGTCTTCTA 57.214 39.130 0.00 0.00 0.00 2.10
2866 4824 4.674281 AACGTTTCCTTCTCTGTCTTCT 57.326 40.909 0.00 0.00 0.00 2.85
2867 4825 6.839820 TTAAACGTTTCCTTCTCTGTCTTC 57.160 37.500 18.42 0.00 0.00 2.87
2868 4826 7.551617 TCTTTTAAACGTTTCCTTCTCTGTCTT 59.448 33.333 18.42 0.00 0.00 3.01
2869 4827 7.046033 TCTTTTAAACGTTTCCTTCTCTGTCT 58.954 34.615 18.42 0.00 0.00 3.41
2870 4828 7.242914 TCTTTTAAACGTTTCCTTCTCTGTC 57.757 36.000 18.42 0.00 0.00 3.51
2871 4829 7.803279 ATCTTTTAAACGTTTCCTTCTCTGT 57.197 32.000 18.42 0.00 0.00 3.41
2872 4830 8.342634 TCAATCTTTTAAACGTTTCCTTCTCTG 58.657 33.333 18.42 9.14 0.00 3.35
2873 4831 8.446599 TCAATCTTTTAAACGTTTCCTTCTCT 57.553 30.769 18.42 0.00 0.00 3.10
2874 4832 9.170584 CTTCAATCTTTTAAACGTTTCCTTCTC 57.829 33.333 18.42 0.00 0.00 2.87
2875 4833 7.648112 GCTTCAATCTTTTAAACGTTTCCTTCT 59.352 33.333 18.42 0.00 0.00 2.85
2876 4834 7.648112 AGCTTCAATCTTTTAAACGTTTCCTTC 59.352 33.333 18.42 0.00 0.00 3.46
2877 4835 7.435192 CAGCTTCAATCTTTTAAACGTTTCCTT 59.565 33.333 18.42 0.00 0.00 3.36
2878 4836 6.918022 CAGCTTCAATCTTTTAAACGTTTCCT 59.082 34.615 18.42 0.00 0.00 3.36
2879 4837 6.915843 TCAGCTTCAATCTTTTAAACGTTTCC 59.084 34.615 18.42 0.00 0.00 3.13
2880 4838 7.644157 ACTCAGCTTCAATCTTTTAAACGTTTC 59.356 33.333 18.42 0.00 0.00 2.78
2881 4839 7.432252 CACTCAGCTTCAATCTTTTAAACGTTT 59.568 33.333 18.90 18.90 0.00 3.60
2882 4840 6.912591 CACTCAGCTTCAATCTTTTAAACGTT 59.087 34.615 0.00 0.00 0.00 3.99
2883 4841 6.260050 TCACTCAGCTTCAATCTTTTAAACGT 59.740 34.615 0.00 0.00 0.00 3.99
2884 4842 6.658831 TCACTCAGCTTCAATCTTTTAAACG 58.341 36.000 0.00 0.00 0.00 3.60
2885 4843 8.856490 TTTCACTCAGCTTCAATCTTTTAAAC 57.144 30.769 0.00 0.00 0.00 2.01
2890 4848 9.635520 CATTATTTTCACTCAGCTTCAATCTTT 57.364 29.630 0.00 0.00 0.00 2.52
2891 4849 9.017509 TCATTATTTTCACTCAGCTTCAATCTT 57.982 29.630 0.00 0.00 0.00 2.40
2892 4850 8.571461 TCATTATTTTCACTCAGCTTCAATCT 57.429 30.769 0.00 0.00 0.00 2.40
2893 4851 8.457261 ACTCATTATTTTCACTCAGCTTCAATC 58.543 33.333 0.00 0.00 0.00 2.67
2894 4852 8.345724 ACTCATTATTTTCACTCAGCTTCAAT 57.654 30.769 0.00 0.00 0.00 2.57
2895 4853 7.750229 ACTCATTATTTTCACTCAGCTTCAA 57.250 32.000 0.00 0.00 0.00 2.69
2896 4854 7.750229 AACTCATTATTTTCACTCAGCTTCA 57.250 32.000 0.00 0.00 0.00 3.02
2897 4855 9.713740 CATAACTCATTATTTTCACTCAGCTTC 57.286 33.333 0.00 0.00 0.00 3.86
2898 4856 8.680903 CCATAACTCATTATTTTCACTCAGCTT 58.319 33.333 0.00 0.00 0.00 3.74
2899 4857 7.201767 GCCATAACTCATTATTTTCACTCAGCT 60.202 37.037 0.00 0.00 0.00 4.24
2900 4858 6.914757 GCCATAACTCATTATTTTCACTCAGC 59.085 38.462 0.00 0.00 0.00 4.26
2901 4859 7.988737 TGCCATAACTCATTATTTTCACTCAG 58.011 34.615 0.00 0.00 0.00 3.35
2902 4860 7.936496 TGCCATAACTCATTATTTTCACTCA 57.064 32.000 0.00 0.00 0.00 3.41
2903 4861 7.800380 CGATGCCATAACTCATTATTTTCACTC 59.200 37.037 0.00 0.00 0.00 3.51
2904 4862 7.642669 CGATGCCATAACTCATTATTTTCACT 58.357 34.615 0.00 0.00 0.00 3.41
2905 4863 6.360681 GCGATGCCATAACTCATTATTTTCAC 59.639 38.462 0.00 0.00 0.00 3.18
2906 4864 6.437928 GCGATGCCATAACTCATTATTTTCA 58.562 36.000 0.00 0.00 0.00 2.69
2907 4865 5.565259 CGCGATGCCATAACTCATTATTTTC 59.435 40.000 0.00 0.00 0.00 2.29
2908 4866 5.008613 ACGCGATGCCATAACTCATTATTTT 59.991 36.000 15.93 0.00 0.00 1.82
2909 4867 4.515191 ACGCGATGCCATAACTCATTATTT 59.485 37.500 15.93 0.00 0.00 1.40
2910 4868 4.065088 ACGCGATGCCATAACTCATTATT 58.935 39.130 15.93 0.00 0.00 1.40
2911 4869 3.664107 ACGCGATGCCATAACTCATTAT 58.336 40.909 15.93 0.00 0.00 1.28
2912 4870 3.106242 ACGCGATGCCATAACTCATTA 57.894 42.857 15.93 0.00 0.00 1.90
2913 4871 1.953559 ACGCGATGCCATAACTCATT 58.046 45.000 15.93 0.00 0.00 2.57
2914 4872 2.223947 TGTACGCGATGCCATAACTCAT 60.224 45.455 15.93 0.00 0.00 2.90
2915 4873 1.135333 TGTACGCGATGCCATAACTCA 59.865 47.619 15.93 0.00 0.00 3.41
2916 4874 1.787155 CTGTACGCGATGCCATAACTC 59.213 52.381 15.93 0.00 0.00 3.01
2917 4875 1.407618 TCTGTACGCGATGCCATAACT 59.592 47.619 15.93 0.00 0.00 2.24
2918 4876 1.847818 TCTGTACGCGATGCCATAAC 58.152 50.000 15.93 0.00 0.00 1.89
2919 4877 2.588027 TTCTGTACGCGATGCCATAA 57.412 45.000 15.93 0.00 0.00 1.90
2920 4878 2.588027 TTTCTGTACGCGATGCCATA 57.412 45.000 15.93 0.00 0.00 2.74
2921 4879 1.599071 CATTTCTGTACGCGATGCCAT 59.401 47.619 15.93 0.00 0.00 4.40
2922 4880 1.006086 CATTTCTGTACGCGATGCCA 58.994 50.000 15.93 2.05 0.00 4.92
2923 4881 1.004927 GTCATTTCTGTACGCGATGCC 60.005 52.381 15.93 0.00 0.00 4.40
2924 4882 1.658596 TGTCATTTCTGTACGCGATGC 59.341 47.619 15.93 2.28 0.00 3.91
2925 4883 5.829233 ATATGTCATTTCTGTACGCGATG 57.171 39.130 15.93 3.87 0.00 3.84
2926 4884 7.411912 GCATTATATGTCATTTCTGTACGCGAT 60.412 37.037 15.93 0.00 0.00 4.58
2927 4885 6.128929 GCATTATATGTCATTTCTGTACGCGA 60.129 38.462 15.93 0.00 0.00 5.87
2928 4886 6.009474 GCATTATATGTCATTTCTGTACGCG 58.991 40.000 3.53 3.53 0.00 6.01
2929 4887 7.011773 CAGCATTATATGTCATTTCTGTACGC 58.988 38.462 0.00 0.00 0.00 4.42
2930 4888 7.384932 TCCAGCATTATATGTCATTTCTGTACG 59.615 37.037 0.00 0.00 0.00 3.67
2931 4889 8.607441 TCCAGCATTATATGTCATTTCTGTAC 57.393 34.615 0.00 0.00 0.00 2.90
2932 4890 9.797642 AATCCAGCATTATATGTCATTTCTGTA 57.202 29.630 0.00 0.00 0.00 2.74
2933 4891 8.701908 AATCCAGCATTATATGTCATTTCTGT 57.298 30.769 0.00 0.00 0.00 3.41
2934 4892 9.976511 AAAATCCAGCATTATATGTCATTTCTG 57.023 29.630 0.00 0.00 0.00 3.02
2940 4898 9.797642 AGATGTAAAATCCAGCATTATATGTCA 57.202 29.630 0.00 0.00 0.00 3.58
2942 4900 9.797642 TCAGATGTAAAATCCAGCATTATATGT 57.202 29.630 0.00 0.00 0.00 2.29
2944 4902 8.954350 GCTCAGATGTAAAATCCAGCATTATAT 58.046 33.333 0.00 0.00 0.00 0.86
2945 4903 8.159447 AGCTCAGATGTAAAATCCAGCATTATA 58.841 33.333 8.71 0.00 30.77 0.98
2946 4904 7.002879 AGCTCAGATGTAAAATCCAGCATTAT 58.997 34.615 8.71 0.00 30.77 1.28
2947 4905 6.359804 AGCTCAGATGTAAAATCCAGCATTA 58.640 36.000 8.71 0.00 30.77 1.90
2948 4906 5.198965 AGCTCAGATGTAAAATCCAGCATT 58.801 37.500 8.71 0.00 30.77 3.56
2949 4907 4.789807 AGCTCAGATGTAAAATCCAGCAT 58.210 39.130 8.71 0.00 30.77 3.79
2950 4908 4.226427 AGCTCAGATGTAAAATCCAGCA 57.774 40.909 8.71 0.00 30.77 4.41
2951 4909 6.317391 ACTTAAGCTCAGATGTAAAATCCAGC 59.683 38.462 1.29 0.00 0.00 4.85
2952 4910 7.856145 ACTTAAGCTCAGATGTAAAATCCAG 57.144 36.000 1.29 0.00 0.00 3.86
2997 4955 9.477484 CACTTCTGTAACTTATGTAGTTTCACT 57.523 33.333 0.00 0.00 44.73 3.41
2998 4956 9.257651 ACACTTCTGTAACTTATGTAGTTTCAC 57.742 33.333 0.00 0.00 44.73 3.18
2999 4957 9.472361 GACACTTCTGTAACTTATGTAGTTTCA 57.528 33.333 0.00 0.00 44.73 2.69
3000 4958 9.472361 TGACACTTCTGTAACTTATGTAGTTTC 57.528 33.333 0.00 0.00 44.73 2.78
3001 4959 9.826574 TTGACACTTCTGTAACTTATGTAGTTT 57.173 29.630 0.00 0.00 44.73 2.66
3003 4961 7.599245 GCTTGACACTTCTGTAACTTATGTAGT 59.401 37.037 0.00 0.00 39.32 2.73
3004 4962 7.815068 AGCTTGACACTTCTGTAACTTATGTAG 59.185 37.037 0.00 0.00 0.00 2.74
3005 4963 7.667557 AGCTTGACACTTCTGTAACTTATGTA 58.332 34.615 0.00 0.00 0.00 2.29
3006 4964 6.525629 AGCTTGACACTTCTGTAACTTATGT 58.474 36.000 0.00 0.00 0.00 2.29
3007 4965 7.598869 TGTAGCTTGACACTTCTGTAACTTATG 59.401 37.037 0.00 0.00 0.00 1.90
3008 4966 7.667557 TGTAGCTTGACACTTCTGTAACTTAT 58.332 34.615 0.00 0.00 0.00 1.73
3009 4967 7.013942 TCTGTAGCTTGACACTTCTGTAACTTA 59.986 37.037 0.00 0.00 0.00 2.24
3010 4968 5.914033 TGTAGCTTGACACTTCTGTAACTT 58.086 37.500 0.00 0.00 0.00 2.66
3011 4969 5.302059 TCTGTAGCTTGACACTTCTGTAACT 59.698 40.000 0.00 0.00 0.00 2.24
3012 4970 5.529791 TCTGTAGCTTGACACTTCTGTAAC 58.470 41.667 0.00 0.00 0.00 2.50
3013 4971 5.784578 TCTGTAGCTTGACACTTCTGTAA 57.215 39.130 0.00 0.00 0.00 2.41
3014 4972 5.302059 ACTTCTGTAGCTTGACACTTCTGTA 59.698 40.000 0.00 0.00 0.00 2.74
3015 4973 4.100189 ACTTCTGTAGCTTGACACTTCTGT 59.900 41.667 0.00 0.00 0.00 3.41
3016 4974 4.447054 CACTTCTGTAGCTTGACACTTCTG 59.553 45.833 0.00 0.00 0.00 3.02
3017 4975 4.502259 CCACTTCTGTAGCTTGACACTTCT 60.502 45.833 0.00 0.00 0.00 2.85
3018 4976 3.743396 CCACTTCTGTAGCTTGACACTTC 59.257 47.826 0.00 0.00 0.00 3.01
3019 4977 3.495100 CCCACTTCTGTAGCTTGACACTT 60.495 47.826 0.00 0.00 0.00 3.16
3020 4978 2.037772 CCCACTTCTGTAGCTTGACACT 59.962 50.000 0.00 0.00 0.00 3.55
3021 4979 2.224305 ACCCACTTCTGTAGCTTGACAC 60.224 50.000 0.00 0.00 0.00 3.67
3022 4980 2.047061 ACCCACTTCTGTAGCTTGACA 58.953 47.619 0.00 0.00 0.00 3.58
3023 4981 2.841442 ACCCACTTCTGTAGCTTGAC 57.159 50.000 0.00 0.00 0.00 3.18
3024 4982 6.808321 ATTATACCCACTTCTGTAGCTTGA 57.192 37.500 0.00 0.00 0.00 3.02
3025 4983 8.993121 CAATATTATACCCACTTCTGTAGCTTG 58.007 37.037 0.00 0.00 0.00 4.01
3026 4984 8.934697 TCAATATTATACCCACTTCTGTAGCTT 58.065 33.333 0.00 0.00 0.00 3.74
3027 4985 8.492415 TCAATATTATACCCACTTCTGTAGCT 57.508 34.615 0.00 0.00 0.00 3.32
3028 4986 8.989980 GTTCAATATTATACCCACTTCTGTAGC 58.010 37.037 0.00 0.00 0.00 3.58
3029 4987 9.490379 GGTTCAATATTATACCCACTTCTGTAG 57.510 37.037 6.83 0.00 0.00 2.74
3030 4988 9.220906 AGGTTCAATATTATACCCACTTCTGTA 57.779 33.333 12.32 0.00 0.00 2.74
3031 4989 8.102484 AGGTTCAATATTATACCCACTTCTGT 57.898 34.615 12.32 0.00 0.00 3.41
3039 4997 9.908152 GCACATTTTAGGTTCAATATTATACCC 57.092 33.333 12.32 1.05 0.00 3.69
3044 5002 9.814899 CCAATGCACATTTTAGGTTCAATATTA 57.185 29.630 0.00 0.00 0.00 0.98
3045 5003 8.320617 ACCAATGCACATTTTAGGTTCAATATT 58.679 29.630 0.00 0.00 0.00 1.28
3046 5004 7.765360 CACCAATGCACATTTTAGGTTCAATAT 59.235 33.333 0.00 0.00 0.00 1.28
3047 5005 7.095910 CACCAATGCACATTTTAGGTTCAATA 58.904 34.615 0.00 0.00 0.00 1.90
3048 5006 5.933463 CACCAATGCACATTTTAGGTTCAAT 59.067 36.000 0.00 0.00 0.00 2.57
3049 5007 5.295950 CACCAATGCACATTTTAGGTTCAA 58.704 37.500 0.00 0.00 0.00 2.69
3050 5008 4.880759 CACCAATGCACATTTTAGGTTCA 58.119 39.130 0.00 0.00 0.00 3.18
3065 5023 3.224269 TCATACATCCATGGCACCAATG 58.776 45.455 6.96 7.88 0.00 2.82
3066 5024 3.598693 TCATACATCCATGGCACCAAT 57.401 42.857 6.96 0.00 0.00 3.16
3067 5025 3.378861 TTCATACATCCATGGCACCAA 57.621 42.857 6.96 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.