Multiple sequence alignment - TraesCS1A01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G355800 chr1A 100.000 4741 0 0 636 5376 538804558 538809298 0.000000e+00 8756.0
1 TraesCS1A01G355800 chr1A 100.000 330 0 0 1 330 538803923 538804252 1.280000e-170 610.0
2 TraesCS1A01G355800 chr1A 95.312 64 1 2 3228 3291 538807108 538807169 3.430000e-17 100.0
3 TraesCS1A01G355800 chr1A 95.312 64 1 2 3186 3247 538807150 538807213 3.430000e-17 100.0
4 TraesCS1A01G355800 chr1B 95.148 2391 93 12 744 3119 596497096 596494714 0.000000e+00 3751.0
5 TraesCS1A01G355800 chr1B 95.326 1198 36 10 3228 4413 596494608 596493419 0.000000e+00 1884.0
6 TraesCS1A01G355800 chr1B 87.935 489 41 6 4433 4912 596493247 596492768 1.310000e-155 560.0
7 TraesCS1A01G355800 chr1B 97.541 122 3 0 3119 3240 596494675 596494554 5.460000e-50 209.0
8 TraesCS1A01G355800 chr1B 94.737 38 2 0 4803 4840 596324525 596324488 5.810000e-05 60.2
9 TraesCS1A01G355800 chr1D 94.554 2387 86 22 744 3119 439631699 439629346 0.000000e+00 3648.0
10 TraesCS1A01G355800 chr1D 97.220 1187 28 3 3228 4413 439629240 439628058 0.000000e+00 2004.0
11 TraesCS1A01G355800 chr1D 82.188 393 35 12 4999 5374 439627121 439626747 6.760000e-79 305.0
12 TraesCS1A01G355800 chr1D 95.420 131 4 2 3119 3247 439629307 439629177 1.960000e-49 207.0
13 TraesCS1A01G355800 chr1D 81.659 229 16 10 4684 4912 439627811 439627609 3.330000e-37 167.0
14 TraesCS1A01G355800 chr5B 80.105 191 30 5 1348 1537 632125094 632125277 9.390000e-28 135.0
15 TraesCS1A01G355800 chr2B 82.927 82 12 1 1348 1429 773738263 773738342 7.470000e-09 73.1
16 TraesCS1A01G355800 chr4D 79.279 111 12 2 651 750 392745315 392745205 3.470000e-07 67.6
17 TraesCS1A01G355800 chr3B 100.000 35 0 0 685 719 391881881 391881847 1.250000e-06 65.8
18 TraesCS1A01G355800 chr7D 100.000 29 0 0 654 682 560910819 560910791 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G355800 chr1A 538803923 538809298 5375 False 2391.5 8756 97.6560 1 5376 4 chr1A.!!$F1 5375
1 TraesCS1A01G355800 chr1B 596492768 596497096 4328 True 1601.0 3751 93.9875 744 4912 4 chr1B.!!$R2 4168
2 TraesCS1A01G355800 chr1D 439626747 439631699 4952 True 1266.2 3648 90.2082 744 5374 5 chr1D.!!$R1 4630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.035439 AGTACCAGTTGATTGGCCGG 60.035 55.000 0.00 0.00 42.18 6.13 F
228 229 0.179936 AGCCCTCGTACTACTAGCGT 59.820 55.000 0.00 0.00 0.00 5.07 F
229 230 0.585838 GCCCTCGTACTACTAGCGTC 59.414 60.000 0.00 0.00 0.00 5.19 F
282 283 0.815095 TGAGCATCGGAAGCTACGAA 59.185 50.000 15.99 0.00 43.58 3.85 F
1833 1844 0.817654 CCAGTATGAGCTCCGTGTCA 59.182 55.000 12.15 0.00 39.69 3.58 F
1834 1845 1.202348 CCAGTATGAGCTCCGTGTCAG 60.202 57.143 12.15 0.00 39.69 3.51 F
2304 2315 2.353889 CGGCATGTCAAAGAGAGGAATG 59.646 50.000 0.00 0.00 0.00 2.67 F
3292 3353 1.079875 CCGTGCATGCCTTTCAATGC 61.080 55.000 16.68 0.75 40.20 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2163 1.347817 GCGACTGAACAGGCTCTTCG 61.348 60.000 6.11 6.73 33.16 3.79 R
2304 2315 4.622701 AGCTCACAAAAATATCGAAGGC 57.377 40.909 0.00 0.00 0.00 4.35 R
2316 2327 4.356405 TCTCCTCAATGAAGCTCACAAA 57.644 40.909 0.00 0.00 0.00 2.83 R
2413 2424 2.739379 GTCTCCTTCTGCTTAGCACAAC 59.261 50.000 1.39 0.00 33.79 3.32 R
3091 3107 0.247736 GTCCTCGACACAATCAGGCT 59.752 55.000 0.00 0.00 32.09 4.58 R
3104 3120 1.464734 TCTTCTACCTGCTGTCCTCG 58.535 55.000 0.00 0.00 0.00 4.63 R
3675 3736 2.203337 GCAGTGTCTTGCCACCCA 60.203 61.111 0.00 0.00 38.13 4.51 R
4934 5192 0.036952 ATGAGTCCGTTCTGGCTGTG 60.037 55.000 0.00 0.00 37.80 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.519906 GGTAATGGGAAAGGGAGAATGA 57.480 45.455 0.00 0.00 0.00 2.57
22 23 5.066913 GGTAATGGGAAAGGGAGAATGAT 57.933 43.478 0.00 0.00 0.00 2.45
23 24 6.200878 GGTAATGGGAAAGGGAGAATGATA 57.799 41.667 0.00 0.00 0.00 2.15
24 25 6.610830 GGTAATGGGAAAGGGAGAATGATAA 58.389 40.000 0.00 0.00 0.00 1.75
25 26 6.717084 GGTAATGGGAAAGGGAGAATGATAAG 59.283 42.308 0.00 0.00 0.00 1.73
26 27 6.596869 AATGGGAAAGGGAGAATGATAAGA 57.403 37.500 0.00 0.00 0.00 2.10
27 28 6.596869 ATGGGAAAGGGAGAATGATAAGAA 57.403 37.500 0.00 0.00 0.00 2.52
28 29 6.401537 TGGGAAAGGGAGAATGATAAGAAA 57.598 37.500 0.00 0.00 0.00 2.52
29 30 6.985225 TGGGAAAGGGAGAATGATAAGAAAT 58.015 36.000 0.00 0.00 0.00 2.17
30 31 8.113114 TGGGAAAGGGAGAATGATAAGAAATA 57.887 34.615 0.00 0.00 0.00 1.40
31 32 8.220559 TGGGAAAGGGAGAATGATAAGAAATAG 58.779 37.037 0.00 0.00 0.00 1.73
32 33 8.440771 GGGAAAGGGAGAATGATAAGAAATAGA 58.559 37.037 0.00 0.00 0.00 1.98
33 34 9.853177 GGAAAGGGAGAATGATAAGAAATAGAA 57.147 33.333 0.00 0.00 0.00 2.10
132 133 2.470057 AAAACCCAAGAAGCTTCCCA 57.530 45.000 22.81 0.00 0.00 4.37
133 134 2.001076 AAACCCAAGAAGCTTCCCAG 57.999 50.000 22.81 12.46 0.00 4.45
134 135 1.149101 AACCCAAGAAGCTTCCCAGA 58.851 50.000 22.81 0.00 0.00 3.86
135 136 1.149101 ACCCAAGAAGCTTCCCAGAA 58.851 50.000 22.81 0.00 0.00 3.02
136 137 1.202940 ACCCAAGAAGCTTCCCAGAAC 60.203 52.381 22.81 0.00 0.00 3.01
137 138 1.074566 CCCAAGAAGCTTCCCAGAACT 59.925 52.381 22.81 0.00 0.00 3.01
138 139 2.157738 CCAAGAAGCTTCCCAGAACTG 58.842 52.381 22.81 8.71 0.00 3.16
147 148 2.426431 TCCCAGAACTGGTAGGGAAA 57.574 50.000 17.92 0.00 46.94 3.13
148 149 1.982958 TCCCAGAACTGGTAGGGAAAC 59.017 52.381 17.92 0.00 46.94 2.78
149 150 2.428783 TCCCAGAACTGGTAGGGAAACT 60.429 50.000 17.92 0.00 46.94 2.66
150 151 3.790089 CCAGAACTGGTAGGGAAACTT 57.210 47.619 12.21 0.00 45.53 2.66
151 152 3.676093 CCAGAACTGGTAGGGAAACTTC 58.324 50.000 12.21 0.00 45.53 3.01
152 153 3.559384 CCAGAACTGGTAGGGAAACTTCC 60.559 52.174 12.21 0.00 45.53 3.46
162 163 2.526304 GGAAACTTCCCAAAACCAGC 57.474 50.000 0.00 0.00 41.62 4.85
163 164 2.039418 GGAAACTTCCCAAAACCAGCT 58.961 47.619 0.00 0.00 41.62 4.24
164 165 3.227614 GGAAACTTCCCAAAACCAGCTA 58.772 45.455 0.00 0.00 41.62 3.32
165 166 3.005472 GGAAACTTCCCAAAACCAGCTAC 59.995 47.826 0.00 0.00 41.62 3.58
166 167 2.287977 ACTTCCCAAAACCAGCTACC 57.712 50.000 0.00 0.00 0.00 3.18
167 168 1.165270 CTTCCCAAAACCAGCTACCG 58.835 55.000 0.00 0.00 0.00 4.02
168 169 0.766131 TTCCCAAAACCAGCTACCGA 59.234 50.000 0.00 0.00 0.00 4.69
169 170 0.766131 TCCCAAAACCAGCTACCGAA 59.234 50.000 0.00 0.00 0.00 4.30
170 171 1.165270 CCCAAAACCAGCTACCGAAG 58.835 55.000 0.00 0.00 0.00 3.79
180 181 3.442996 CTACCGAAGCACCCTCAAG 57.557 57.895 0.00 0.00 0.00 3.02
181 182 0.608640 CTACCGAAGCACCCTCAAGT 59.391 55.000 0.00 0.00 0.00 3.16
182 183 1.822990 CTACCGAAGCACCCTCAAGTA 59.177 52.381 0.00 0.00 0.00 2.24
183 184 0.320697 ACCGAAGCACCCTCAAGTAC 59.679 55.000 0.00 0.00 0.00 2.73
184 185 0.391263 CCGAAGCACCCTCAAGTACC 60.391 60.000 0.00 0.00 0.00 3.34
185 186 0.320374 CGAAGCACCCTCAAGTACCA 59.680 55.000 0.00 0.00 0.00 3.25
186 187 1.673033 CGAAGCACCCTCAAGTACCAG 60.673 57.143 0.00 0.00 0.00 4.00
187 188 1.348036 GAAGCACCCTCAAGTACCAGT 59.652 52.381 0.00 0.00 0.00 4.00
188 189 1.435256 AGCACCCTCAAGTACCAGTT 58.565 50.000 0.00 0.00 0.00 3.16
189 190 1.072331 AGCACCCTCAAGTACCAGTTG 59.928 52.381 0.00 0.00 0.00 3.16
190 191 1.071699 GCACCCTCAAGTACCAGTTGA 59.928 52.381 0.00 0.00 35.34 3.18
191 192 2.290323 GCACCCTCAAGTACCAGTTGAT 60.290 50.000 0.00 0.00 36.98 2.57
192 193 3.810743 GCACCCTCAAGTACCAGTTGATT 60.811 47.826 0.00 0.00 36.98 2.57
193 194 3.753272 CACCCTCAAGTACCAGTTGATTG 59.247 47.826 0.00 0.00 36.98 2.67
194 195 3.244911 ACCCTCAAGTACCAGTTGATTGG 60.245 47.826 9.00 9.00 44.09 3.16
195 196 2.749621 CCTCAAGTACCAGTTGATTGGC 59.250 50.000 0.00 0.00 42.18 4.52
196 197 2.749621 CTCAAGTACCAGTTGATTGGCC 59.250 50.000 0.00 0.00 42.18 5.36
197 198 1.468520 CAAGTACCAGTTGATTGGCCG 59.531 52.381 0.00 0.00 42.18 6.13
198 199 0.035439 AGTACCAGTTGATTGGCCGG 60.035 55.000 0.00 0.00 42.18 6.13
199 200 1.377987 TACCAGTTGATTGGCCGGC 60.378 57.895 21.18 21.18 42.18 6.13
200 201 2.830186 TACCAGTTGATTGGCCGGCC 62.830 60.000 39.40 39.40 42.18 6.13
201 202 3.451894 CAGTTGATTGGCCGGCCC 61.452 66.667 41.75 27.12 34.56 5.80
206 207 4.947147 GATTGGCCGGCCCGCATA 62.947 66.667 41.75 21.65 35.87 3.14
215 216 4.971125 GCCCGCATACGAGCCCTC 62.971 72.222 0.00 0.00 43.93 4.30
226 227 0.867086 CGAGCCCTCGTACTACTAGC 59.133 60.000 9.41 0.00 46.99 3.42
227 228 0.867086 GAGCCCTCGTACTACTAGCG 59.133 60.000 0.00 0.00 0.00 4.26
228 229 0.179936 AGCCCTCGTACTACTAGCGT 59.820 55.000 0.00 0.00 0.00 5.07
229 230 0.585838 GCCCTCGTACTACTAGCGTC 59.414 60.000 0.00 0.00 0.00 5.19
230 231 1.945387 CCCTCGTACTACTAGCGTCA 58.055 55.000 0.00 0.00 0.00 4.35
231 232 1.865970 CCCTCGTACTACTAGCGTCAG 59.134 57.143 0.00 0.00 0.00 3.51
232 233 2.548875 CCTCGTACTACTAGCGTCAGT 58.451 52.381 0.00 0.00 0.00 3.41
233 234 2.284684 CCTCGTACTACTAGCGTCAGTG 59.715 54.545 0.00 0.00 0.00 3.66
234 235 2.928757 CTCGTACTACTAGCGTCAGTGT 59.071 50.000 0.00 1.75 0.00 3.55
235 236 2.926200 TCGTACTACTAGCGTCAGTGTC 59.074 50.000 0.00 0.00 0.00 3.67
236 237 2.928757 CGTACTACTAGCGTCAGTGTCT 59.071 50.000 0.00 0.00 0.00 3.41
237 238 4.108336 CGTACTACTAGCGTCAGTGTCTA 58.892 47.826 0.00 0.00 0.00 2.59
238 239 4.026968 CGTACTACTAGCGTCAGTGTCTAC 60.027 50.000 0.00 0.00 0.00 2.59
239 240 2.928757 ACTACTAGCGTCAGTGTCTACG 59.071 50.000 0.00 0.00 41.92 3.51
240 241 2.090400 ACTAGCGTCAGTGTCTACGA 57.910 50.000 7.00 0.00 41.55 3.43
241 242 2.420642 ACTAGCGTCAGTGTCTACGAA 58.579 47.619 7.00 0.00 41.55 3.85
242 243 2.810274 ACTAGCGTCAGTGTCTACGAAA 59.190 45.455 7.00 0.00 41.55 3.46
243 244 2.787601 AGCGTCAGTGTCTACGAAAA 57.212 45.000 7.00 0.00 41.55 2.29
244 245 3.088194 AGCGTCAGTGTCTACGAAAAA 57.912 42.857 7.00 0.00 41.55 1.94
245 246 3.050619 AGCGTCAGTGTCTACGAAAAAG 58.949 45.455 7.00 0.00 41.55 2.27
246 247 2.793232 GCGTCAGTGTCTACGAAAAAGT 59.207 45.455 7.00 0.00 41.55 2.66
247 248 3.976942 GCGTCAGTGTCTACGAAAAAGTA 59.023 43.478 7.00 0.00 41.55 2.24
248 249 4.442073 GCGTCAGTGTCTACGAAAAAGTAA 59.558 41.667 7.00 0.00 41.55 2.24
249 250 5.118203 GCGTCAGTGTCTACGAAAAAGTAAT 59.882 40.000 7.00 0.00 41.55 1.89
250 251 6.306356 GCGTCAGTGTCTACGAAAAAGTAATA 59.694 38.462 7.00 0.00 41.55 0.98
251 252 7.008992 GCGTCAGTGTCTACGAAAAAGTAATAT 59.991 37.037 7.00 0.00 41.55 1.28
252 253 9.494479 CGTCAGTGTCTACGAAAAAGTAATATA 57.506 33.333 0.00 0.00 41.55 0.86
256 257 9.294030 AGTGTCTACGAAAAAGTAATATAACGG 57.706 33.333 0.00 0.00 0.00 4.44
257 258 8.534778 GTGTCTACGAAAAAGTAATATAACGGG 58.465 37.037 0.00 0.00 0.00 5.28
258 259 8.250332 TGTCTACGAAAAAGTAATATAACGGGT 58.750 33.333 0.00 0.00 0.00 5.28
259 260 9.730420 GTCTACGAAAAAGTAATATAACGGGTA 57.270 33.333 0.00 0.00 0.00 3.69
260 261 9.730420 TCTACGAAAAAGTAATATAACGGGTAC 57.270 33.333 0.00 0.00 0.00 3.34
261 262 9.736023 CTACGAAAAAGTAATATAACGGGTACT 57.264 33.333 0.00 0.00 0.00 2.73
267 268 9.702494 AAAAGTAATATAACGGGTACTATGAGC 57.298 33.333 0.00 0.00 0.00 4.26
268 269 8.413309 AAGTAATATAACGGGTACTATGAGCA 57.587 34.615 0.00 0.00 0.00 4.26
269 270 8.591114 AGTAATATAACGGGTACTATGAGCAT 57.409 34.615 0.00 0.00 0.00 3.79
270 271 8.684520 AGTAATATAACGGGTACTATGAGCATC 58.315 37.037 0.00 0.00 0.00 3.91
271 272 2.795175 AACGGGTACTATGAGCATCG 57.205 50.000 0.00 0.00 38.61 3.84
272 273 0.959553 ACGGGTACTATGAGCATCGG 59.040 55.000 0.00 0.00 38.61 4.18
273 274 1.244816 CGGGTACTATGAGCATCGGA 58.755 55.000 0.00 0.00 38.61 4.55
274 275 1.611977 CGGGTACTATGAGCATCGGAA 59.388 52.381 0.00 0.00 38.61 4.30
275 276 2.351835 CGGGTACTATGAGCATCGGAAG 60.352 54.545 0.00 0.00 38.61 3.46
276 277 2.610727 GGGTACTATGAGCATCGGAAGC 60.611 54.545 0.00 0.00 38.61 3.86
277 278 2.297597 GGTACTATGAGCATCGGAAGCT 59.702 50.000 7.55 7.55 46.82 3.74
278 279 3.506455 GGTACTATGAGCATCGGAAGCTA 59.494 47.826 7.83 0.00 43.58 3.32
279 280 3.651803 ACTATGAGCATCGGAAGCTAC 57.348 47.619 7.83 3.16 43.58 3.58
280 281 2.030717 ACTATGAGCATCGGAAGCTACG 60.031 50.000 7.83 4.50 43.58 3.51
281 282 1.032794 ATGAGCATCGGAAGCTACGA 58.967 50.000 14.65 14.65 43.58 3.43
282 283 0.815095 TGAGCATCGGAAGCTACGAA 59.185 50.000 15.99 0.00 43.58 3.85
283 284 1.203758 TGAGCATCGGAAGCTACGAAA 59.796 47.619 15.99 0.00 43.58 3.46
284 285 2.268298 GAGCATCGGAAGCTACGAAAA 58.732 47.619 15.99 0.00 43.58 2.29
285 286 2.671396 GAGCATCGGAAGCTACGAAAAA 59.329 45.455 15.99 0.00 43.58 1.94
309 310 9.590451 AAAACTTTTGGATGATGTAATAGCATG 57.410 29.630 0.00 0.00 35.08 4.06
310 311 8.523915 AACTTTTGGATGATGTAATAGCATGA 57.476 30.769 0.00 0.00 35.08 3.07
311 312 8.523915 ACTTTTGGATGATGTAATAGCATGAA 57.476 30.769 0.00 0.00 35.08 2.57
312 313 9.139734 ACTTTTGGATGATGTAATAGCATGAAT 57.860 29.630 0.00 0.00 35.08 2.57
313 314 9.406828 CTTTTGGATGATGTAATAGCATGAATG 57.593 33.333 0.00 0.00 35.08 2.67
314 315 8.694581 TTTGGATGATGTAATAGCATGAATGA 57.305 30.769 0.00 0.00 35.08 2.57
315 316 8.694581 TTGGATGATGTAATAGCATGAATGAA 57.305 30.769 0.00 0.00 35.08 2.57
316 317 8.873186 TGGATGATGTAATAGCATGAATGAAT 57.127 30.769 0.00 0.00 35.08 2.57
317 318 9.304335 TGGATGATGTAATAGCATGAATGAATT 57.696 29.630 0.00 0.00 35.08 2.17
657 658 5.424121 GCCATCAATCGTTTGCTAATACT 57.576 39.130 1.18 0.00 32.61 2.12
658 659 5.444122 GCCATCAATCGTTTGCTAATACTC 58.556 41.667 1.18 0.00 32.61 2.59
659 660 5.560953 GCCATCAATCGTTTGCTAATACTCC 60.561 44.000 1.18 0.00 32.61 3.85
660 661 5.049405 CCATCAATCGTTTGCTAATACTCCC 60.049 44.000 1.18 0.00 32.61 4.30
661 662 5.353394 TCAATCGTTTGCTAATACTCCCT 57.647 39.130 1.18 0.00 32.61 4.20
662 663 5.741011 TCAATCGTTTGCTAATACTCCCTT 58.259 37.500 1.18 0.00 32.61 3.95
663 664 5.815740 TCAATCGTTTGCTAATACTCCCTTC 59.184 40.000 1.18 0.00 32.61 3.46
664 665 3.777478 TCGTTTGCTAATACTCCCTTCG 58.223 45.455 0.00 0.00 0.00 3.79
665 666 3.194116 TCGTTTGCTAATACTCCCTTCGT 59.806 43.478 0.00 0.00 0.00 3.85
666 667 3.550678 CGTTTGCTAATACTCCCTTCGTC 59.449 47.826 0.00 0.00 0.00 4.20
667 668 3.814005 TTGCTAATACTCCCTTCGTCC 57.186 47.619 0.00 0.00 0.00 4.79
668 669 2.037144 TGCTAATACTCCCTTCGTCCC 58.963 52.381 0.00 0.00 0.00 4.46
669 670 1.000496 GCTAATACTCCCTTCGTCCCG 60.000 57.143 0.00 0.00 0.00 5.14
670 671 2.579873 CTAATACTCCCTTCGTCCCGA 58.420 52.381 0.00 0.00 0.00 5.14
671 672 1.856629 AATACTCCCTTCGTCCCGAA 58.143 50.000 0.00 0.00 43.75 4.30
672 673 2.083628 ATACTCCCTTCGTCCCGAAT 57.916 50.000 0.00 0.00 44.85 3.34
673 674 1.856629 TACTCCCTTCGTCCCGAATT 58.143 50.000 0.00 0.00 44.85 2.17
674 675 1.856629 ACTCCCTTCGTCCCGAATTA 58.143 50.000 0.00 0.00 44.85 1.40
675 676 1.479730 ACTCCCTTCGTCCCGAATTAC 59.520 52.381 0.00 0.00 44.85 1.89
676 677 1.755380 CTCCCTTCGTCCCGAATTACT 59.245 52.381 0.00 0.00 44.85 2.24
677 678 2.167900 CTCCCTTCGTCCCGAATTACTT 59.832 50.000 0.00 0.00 44.85 2.24
678 679 3.364549 TCCCTTCGTCCCGAATTACTTA 58.635 45.455 0.00 0.00 44.85 2.24
679 680 3.962718 TCCCTTCGTCCCGAATTACTTAT 59.037 43.478 0.00 0.00 44.85 1.73
680 681 4.038402 TCCCTTCGTCCCGAATTACTTATC 59.962 45.833 0.00 0.00 44.85 1.75
681 682 4.038883 CCCTTCGTCCCGAATTACTTATCT 59.961 45.833 0.00 0.00 44.85 1.98
682 683 5.221130 CCTTCGTCCCGAATTACTTATCTC 58.779 45.833 0.00 0.00 44.85 2.75
683 684 4.478843 TCGTCCCGAATTACTTATCTCG 57.521 45.455 0.00 0.00 31.06 4.04
684 685 4.129380 TCGTCCCGAATTACTTATCTCGA 58.871 43.478 0.00 0.00 33.13 4.04
685 686 4.758674 TCGTCCCGAATTACTTATCTCGAT 59.241 41.667 0.00 0.00 33.13 3.59
686 687 5.087397 CGTCCCGAATTACTTATCTCGATC 58.913 45.833 0.00 0.00 33.13 3.69
687 688 5.106634 CGTCCCGAATTACTTATCTCGATCT 60.107 44.000 0.00 0.00 33.13 2.75
688 689 6.091849 CGTCCCGAATTACTTATCTCGATCTA 59.908 42.308 0.00 0.00 33.13 1.98
689 690 7.465989 GTCCCGAATTACTTATCTCGATCTAG 58.534 42.308 0.00 0.00 33.13 2.43
690 691 7.333921 GTCCCGAATTACTTATCTCGATCTAGA 59.666 40.741 0.00 0.00 33.13 2.43
691 692 7.881751 TCCCGAATTACTTATCTCGATCTAGAA 59.118 37.037 0.45 0.00 33.13 2.10
692 693 7.964011 CCCGAATTACTTATCTCGATCTAGAAC 59.036 40.741 0.45 0.00 33.13 3.01
693 694 8.723311 CCGAATTACTTATCTCGATCTAGAACT 58.277 37.037 0.45 0.00 33.13 3.01
704 705 9.881529 ATCTCGATCTAGAACTAAAAATACGTC 57.118 33.333 0.45 0.00 0.00 4.34
705 706 9.107177 TCTCGATCTAGAACTAAAAATACGTCT 57.893 33.333 0.00 0.00 0.00 4.18
726 727 9.477484 ACGTCTAAATACATCCATTCTTATCAC 57.523 33.333 0.00 0.00 0.00 3.06
727 728 9.476202 CGTCTAAATACATCCATTCTTATCACA 57.524 33.333 0.00 0.00 0.00 3.58
736 737 8.830580 ACATCCATTCTTATCACAAGTAATTCG 58.169 33.333 0.00 0.00 0.00 3.34
737 738 7.786178 TCCATTCTTATCACAAGTAATTCGG 57.214 36.000 0.00 0.00 0.00 4.30
738 739 6.765989 TCCATTCTTATCACAAGTAATTCGGG 59.234 38.462 0.00 0.00 0.00 5.14
739 740 6.765989 CCATTCTTATCACAAGTAATTCGGGA 59.234 38.462 0.00 0.00 0.00 5.14
740 741 7.254795 CCATTCTTATCACAAGTAATTCGGGAC 60.255 40.741 0.00 0.00 0.00 4.46
741 742 6.288941 TCTTATCACAAGTAATTCGGGACA 57.711 37.500 0.00 0.00 0.00 4.02
742 743 6.703319 TCTTATCACAAGTAATTCGGGACAA 58.297 36.000 0.00 0.00 0.00 3.18
743 744 7.162761 TCTTATCACAAGTAATTCGGGACAAA 58.837 34.615 0.00 0.00 0.00 2.83
744 745 5.880054 ATCACAAGTAATTCGGGACAAAG 57.120 39.130 0.00 0.00 0.00 2.77
745 746 4.069304 TCACAAGTAATTCGGGACAAAGG 58.931 43.478 0.00 0.00 0.00 3.11
746 747 3.190535 CACAAGTAATTCGGGACAAAGGG 59.809 47.826 0.00 0.00 0.00 3.95
747 748 3.073356 ACAAGTAATTCGGGACAAAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
748 749 3.629142 AGTAATTCGGGACAAAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
749 750 2.910977 AGTAATTCGGGACAAAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
767 769 8.568617 AAGGGAGTCCTATTAAACATCAGTAT 57.431 34.615 9.58 0.00 44.07 2.12
781 783 4.160439 ACATCAGTATGGGCGATACATAGG 59.840 45.833 19.75 11.79 39.71 2.57
786 788 1.330234 TGGGCGATACATAGGCGTAA 58.670 50.000 0.00 0.00 0.00 3.18
802 804 4.386711 GGCGTAACCTAAATATCTTGCCT 58.613 43.478 0.00 0.00 35.92 4.75
803 805 4.451435 GGCGTAACCTAAATATCTTGCCTC 59.549 45.833 0.00 0.00 35.92 4.70
804 806 4.150098 GCGTAACCTAAATATCTTGCCTCG 59.850 45.833 0.00 0.00 0.00 4.63
805 807 4.684703 CGTAACCTAAATATCTTGCCTCGG 59.315 45.833 0.00 0.00 0.00 4.63
806 808 3.771577 ACCTAAATATCTTGCCTCGGG 57.228 47.619 0.00 0.00 0.00 5.14
807 809 3.314693 ACCTAAATATCTTGCCTCGGGA 58.685 45.455 0.00 0.00 0.00 5.14
808 810 3.325135 ACCTAAATATCTTGCCTCGGGAG 59.675 47.826 0.00 0.00 0.00 4.30
846 850 2.433664 GTTGGTCGTGGGCCTACG 60.434 66.667 33.44 33.44 44.98 3.51
871 875 1.226030 ATACCGCGAAATAAGCCCGC 61.226 55.000 8.23 0.00 44.81 6.13
872 876 3.949047 CCGCGAAATAAGCCCGCC 61.949 66.667 8.23 0.00 45.39 6.13
875 879 2.512974 CGAAATAAGCCCGCCGGT 60.513 61.111 1.90 0.00 0.00 5.28
892 896 1.664873 GGTAAAGCCCACGAGGAATC 58.335 55.000 0.00 0.00 38.24 2.52
1011 1016 4.069232 CTCTTCCTCGCCGCCACA 62.069 66.667 0.00 0.00 0.00 4.17
1092 1097 1.025812 CGAAGCTCTCCCAGTACGAT 58.974 55.000 0.00 0.00 0.00 3.73
1332 1339 1.073923 CCCACCCTTAGTTGCTTCAGT 59.926 52.381 0.00 0.00 0.00 3.41
1439 1447 7.228706 CACTAGTTGGTTGGTTTCAGAGTTATT 59.771 37.037 0.00 0.00 0.00 1.40
1440 1448 7.778382 ACTAGTTGGTTGGTTTCAGAGTTATTT 59.222 33.333 0.00 0.00 0.00 1.40
1698 1709 9.638176 ACTGATTTAGAAATTGATTAGGCATCT 57.362 29.630 0.00 0.00 32.34 2.90
1767 1778 2.167693 AGGAATTGCACCATGCTCAATG 59.832 45.455 0.00 0.00 45.31 2.82
1783 1794 4.711399 CTCAATGATGCCATACAGGAAGA 58.289 43.478 0.00 0.00 41.22 2.87
1789 1800 3.071874 TGCCATACAGGAAGAACCAAG 57.928 47.619 0.00 0.00 41.22 3.61
1833 1844 0.817654 CCAGTATGAGCTCCGTGTCA 59.182 55.000 12.15 0.00 39.69 3.58
1834 1845 1.202348 CCAGTATGAGCTCCGTGTCAG 60.202 57.143 12.15 0.00 39.69 3.51
2123 2134 8.737175 CATGCTTATTTGATATACTTGCCAGAT 58.263 33.333 0.00 0.00 0.00 2.90
2152 2163 5.173854 GTGTTTTTCACAGAACTAATGCTGC 59.826 40.000 0.00 0.00 45.51 5.25
2178 2189 2.357034 TGTTCAGTCGCTTCGCCC 60.357 61.111 0.00 0.00 0.00 6.13
2304 2315 2.353889 CGGCATGTCAAAGAGAGGAATG 59.646 50.000 0.00 0.00 0.00 2.67
2413 2424 8.525290 AAGAAAATAGTGTCAAATATCCTGGG 57.475 34.615 0.00 0.00 0.00 4.45
2683 2694 4.876107 TGAGAAGTCTGTTGACAAGGAAAC 59.124 41.667 0.00 0.00 45.20 2.78
2936 2951 7.765307 TGCTTAATGTTTTGATCTGATTCCTC 58.235 34.615 0.00 0.00 0.00 3.71
2991 3007 8.729805 TTTATTGCTTCCACTTTGTTTGAATT 57.270 26.923 0.00 0.00 0.00 2.17
3091 3107 3.531538 GTTGTATTCAAGATGAGGCGGA 58.468 45.455 0.00 0.00 33.97 5.54
3151 3206 9.785982 AATCTTCTAAGCTCTAACAGTTCTTTT 57.214 29.630 0.00 0.00 0.00 2.27
3157 3212 9.424319 CTAAGCTCTAACAGTTCTTTTACATCA 57.576 33.333 0.00 0.00 0.00 3.07
3198 3253 6.810888 ATAACAAATGTAAATCGTGCATGC 57.189 33.333 11.82 11.82 32.17 4.06
3199 3254 4.439305 ACAAATGTAAATCGTGCATGCT 57.561 36.364 20.33 0.00 32.17 3.79
3200 3255 4.808558 ACAAATGTAAATCGTGCATGCTT 58.191 34.783 20.33 6.81 32.17 3.91
3201 3256 4.858692 ACAAATGTAAATCGTGCATGCTTC 59.141 37.500 20.33 11.04 32.17 3.86
3202 3257 4.700268 AATGTAAATCGTGCATGCTTCA 57.300 36.364 20.33 1.53 32.17 3.02
3203 3258 4.700268 ATGTAAATCGTGCATGCTTCAA 57.300 36.364 20.33 2.05 30.36 2.69
3204 3259 4.700268 TGTAAATCGTGCATGCTTCAAT 57.300 36.364 20.33 4.49 0.00 2.57
3205 3260 5.809719 TGTAAATCGTGCATGCTTCAATA 57.190 34.783 20.33 2.59 0.00 1.90
3206 3261 5.809464 TGTAAATCGTGCATGCTTCAATAG 58.191 37.500 20.33 2.54 0.00 1.73
3207 3262 3.976793 AATCGTGCATGCTTCAATAGG 57.023 42.857 20.33 2.93 0.00 2.57
3208 3263 2.689553 TCGTGCATGCTTCAATAGGA 57.310 45.000 20.33 5.49 0.00 2.94
3209 3264 2.984562 TCGTGCATGCTTCAATAGGAA 58.015 42.857 20.33 0.00 0.00 3.36
3210 3265 2.677836 TCGTGCATGCTTCAATAGGAAC 59.322 45.455 20.33 3.26 0.00 3.62
3211 3266 2.223340 CGTGCATGCTTCAATAGGAACC 60.223 50.000 20.33 0.00 0.00 3.62
3212 3267 2.754552 GTGCATGCTTCAATAGGAACCA 59.245 45.455 20.33 0.00 0.00 3.67
3213 3268 3.382546 GTGCATGCTTCAATAGGAACCAT 59.617 43.478 20.33 0.00 33.11 3.55
3214 3269 3.633525 TGCATGCTTCAATAGGAACCATC 59.366 43.478 20.33 0.00 31.00 3.51
3215 3270 3.887716 GCATGCTTCAATAGGAACCATCT 59.112 43.478 11.37 0.00 31.00 2.90
3216 3271 5.065914 GCATGCTTCAATAGGAACCATCTA 58.934 41.667 11.37 0.00 31.00 1.98
3217 3272 5.180868 GCATGCTTCAATAGGAACCATCTAG 59.819 44.000 11.37 0.00 31.00 2.43
3218 3273 5.957771 TGCTTCAATAGGAACCATCTAGT 57.042 39.130 0.00 0.00 0.00 2.57
3219 3274 5.918608 TGCTTCAATAGGAACCATCTAGTC 58.081 41.667 0.00 0.00 0.00 2.59
3220 3275 5.663106 TGCTTCAATAGGAACCATCTAGTCT 59.337 40.000 0.00 0.00 0.00 3.24
3221 3276 6.839134 TGCTTCAATAGGAACCATCTAGTCTA 59.161 38.462 0.00 0.00 0.00 2.59
3222 3277 7.510685 TGCTTCAATAGGAACCATCTAGTCTAT 59.489 37.037 0.00 0.00 0.00 1.98
3223 3278 8.371699 GCTTCAATAGGAACCATCTAGTCTATT 58.628 37.037 0.00 0.00 0.00 1.73
3224 3279 9.703892 CTTCAATAGGAACCATCTAGTCTATTG 57.296 37.037 12.15 12.15 42.16 1.90
3225 3280 7.671302 TCAATAGGAACCATCTAGTCTATTGC 58.329 38.462 13.08 0.00 41.33 3.56
3226 3281 7.510685 TCAATAGGAACCATCTAGTCTATTGCT 59.489 37.037 13.08 0.00 41.33 3.91
3227 3282 7.863901 ATAGGAACCATCTAGTCTATTGCTT 57.136 36.000 0.00 0.00 0.00 3.91
3228 3283 8.958060 ATAGGAACCATCTAGTCTATTGCTTA 57.042 34.615 0.00 0.00 0.00 3.09
3229 3284 7.676683 AGGAACCATCTAGTCTATTGCTTAA 57.323 36.000 0.00 0.00 0.00 1.85
3230 3285 8.090788 AGGAACCATCTAGTCTATTGCTTAAA 57.909 34.615 0.00 0.00 0.00 1.52
3231 3286 8.718656 AGGAACCATCTAGTCTATTGCTTAAAT 58.281 33.333 0.00 0.00 0.00 1.40
3232 3287 8.994170 GGAACCATCTAGTCTATTGCTTAAATC 58.006 37.037 0.00 0.00 0.00 2.17
3233 3288 8.594881 AACCATCTAGTCTATTGCTTAAATCG 57.405 34.615 0.00 0.00 0.00 3.34
3234 3289 7.727181 ACCATCTAGTCTATTGCTTAAATCGT 58.273 34.615 0.00 0.00 0.00 3.73
3235 3290 7.653713 ACCATCTAGTCTATTGCTTAAATCGTG 59.346 37.037 0.00 0.00 0.00 4.35
3236 3291 7.359598 CCATCTAGTCTATTGCTTAAATCGTGC 60.360 40.741 0.00 0.00 0.00 5.34
3237 3292 6.569780 TCTAGTCTATTGCTTAAATCGTGCA 58.430 36.000 0.00 0.00 34.69 4.57
3238 3293 7.210174 TCTAGTCTATTGCTTAAATCGTGCAT 58.790 34.615 0.00 0.00 36.55 3.96
3239 3294 6.052840 AGTCTATTGCTTAAATCGTGCATG 57.947 37.500 0.00 0.00 36.55 4.06
3292 3353 1.079875 CCGTGCATGCCTTTCAATGC 61.080 55.000 16.68 0.75 40.20 3.56
3675 3736 2.743718 CTCTGTGGCTTCACCGGT 59.256 61.111 0.00 0.00 43.94 5.28
3678 3739 4.263572 TGTGGCTTCACCGGTGGG 62.264 66.667 33.40 25.42 43.94 4.61
3688 3749 4.263572 CCGGTGGGTGGCAAGACA 62.264 66.667 0.00 0.00 0.00 3.41
4200 4262 7.721286 TTAGTGGATCGTTTTTAACCGTTAA 57.279 32.000 0.00 0.00 0.00 2.01
4312 4379 4.230455 CCCCCACTCTAGATCTGAGATTT 58.770 47.826 21.59 0.00 35.66 2.17
4337 4404 9.490379 TTGTAAGTTGGATTAGTCTTTCTCTTC 57.510 33.333 0.00 0.00 0.00 2.87
4372 4439 7.864882 TGACTCGTGCATTAAATTTGAATTTGA 59.135 29.630 11.02 4.43 38.90 2.69
4386 4453 9.872721 AATTTGAATTTGAAAAGGTGCATTTTT 57.127 22.222 10.53 10.53 32.62 1.94
4413 4480 6.589523 GCTGCAAATGTTTGGTTCATATGTTA 59.410 34.615 1.90 0.00 38.57 2.41
4414 4481 7.117523 GCTGCAAATGTTTGGTTCATATGTTAA 59.882 33.333 1.90 0.00 38.57 2.01
4416 4483 9.330063 TGCAAATGTTTGGTTCATATGTTAAAA 57.670 25.926 1.90 0.00 38.57 1.52
4488 4745 2.058595 AATCCGCCCTCGCTGTAGT 61.059 57.895 0.00 0.00 0.00 2.73
4492 4749 2.202623 GCCCTCGCTGTAGTGTCG 60.203 66.667 0.00 0.00 0.00 4.35
4496 4753 3.701604 CTCGCTGTAGTGTCGGCCC 62.702 68.421 0.00 0.00 36.46 5.80
4503 4760 1.270625 TGTAGTGTCGGCCCTTTGAAG 60.271 52.381 0.00 0.00 0.00 3.02
4517 4774 5.494724 CCCTTTGAAGATTCTGAGACATGA 58.505 41.667 0.00 0.00 0.00 3.07
4526 4783 6.575267 AGATTCTGAGACATGATGACTCTTG 58.425 40.000 21.66 15.45 39.34 3.02
4549 4806 1.153958 GCGCATGCCTTGTTTCTCC 60.154 57.895 13.15 0.00 33.98 3.71
4550 4807 1.865788 GCGCATGCCTTGTTTCTCCA 61.866 55.000 13.15 0.00 33.98 3.86
4551 4808 0.813184 CGCATGCCTTGTTTCTCCAT 59.187 50.000 13.15 0.00 0.00 3.41
4557 4814 1.200020 GCCTTGTTTCTCCATGGTTCG 59.800 52.381 12.58 1.79 33.37 3.95
4560 4817 4.069304 CCTTGTTTCTCCATGGTTCGTAA 58.931 43.478 12.58 1.18 0.00 3.18
4561 4818 4.083484 CCTTGTTTCTCCATGGTTCGTAAC 60.083 45.833 12.58 11.64 0.00 2.50
4591 4848 5.879777 TCATCAACGGAAAATTGAGCATAGA 59.120 36.000 0.00 0.00 39.36 1.98
4592 4849 6.374053 TCATCAACGGAAAATTGAGCATAGAA 59.626 34.615 0.00 0.00 39.36 2.10
4663 4921 6.096001 AGGTAGTACGTACAGTTCCTAATTGG 59.904 42.308 26.55 0.00 32.62 3.16
4753 5011 0.968901 TGACCGTAATCTGCCTCCGT 60.969 55.000 0.00 0.00 0.00 4.69
4796 5054 1.552792 CTTCCTCTGTCCTCCTTGTCC 59.447 57.143 0.00 0.00 0.00 4.02
4797 5055 0.612174 TCCTCTGTCCTCCTTGTCCG 60.612 60.000 0.00 0.00 0.00 4.79
4802 5060 4.069232 TCCTCCTTGTCCGCGCTG 62.069 66.667 5.56 0.00 0.00 5.18
4887 5145 1.306568 GCCTCTTCCCTCTCCCACT 60.307 63.158 0.00 0.00 0.00 4.00
4903 5161 1.419387 CCACTCTCCCATGGGATCTTC 59.581 57.143 33.89 0.00 44.24 2.87
4904 5162 2.121948 CACTCTCCCATGGGATCTTCA 58.878 52.381 33.89 10.87 44.24 3.02
4909 5167 1.528824 CCATGGGATCTTCACCGCT 59.471 57.895 2.85 0.00 0.00 5.52
4912 5170 1.630126 ATGGGATCTTCACCGCTGCT 61.630 55.000 0.00 0.00 0.00 4.24
4913 5171 1.817099 GGGATCTTCACCGCTGCTG 60.817 63.158 0.00 0.00 0.00 4.41
4914 5172 1.078848 GGATCTTCACCGCTGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
4915 5173 0.674895 GGATCTTCACCGCTGCTGTT 60.675 55.000 0.00 0.00 0.00 3.16
4916 5174 1.160137 GATCTTCACCGCTGCTGTTT 58.840 50.000 0.00 0.00 0.00 2.83
4917 5175 1.129437 GATCTTCACCGCTGCTGTTTC 59.871 52.381 0.00 0.00 0.00 2.78
4918 5176 0.884704 TCTTCACCGCTGCTGTTTCC 60.885 55.000 0.00 0.00 0.00 3.13
4919 5177 0.886490 CTTCACCGCTGCTGTTTCCT 60.886 55.000 0.00 0.00 0.00 3.36
4920 5178 0.884704 TTCACCGCTGCTGTTTCCTC 60.885 55.000 0.00 0.00 0.00 3.71
4921 5179 2.032681 ACCGCTGCTGTTTCCTCC 59.967 61.111 0.00 0.00 0.00 4.30
4922 5180 2.747855 CCGCTGCTGTTTCCTCCC 60.748 66.667 0.00 0.00 0.00 4.30
4923 5181 2.348998 CGCTGCTGTTTCCTCCCT 59.651 61.111 0.00 0.00 0.00 4.20
4924 5182 1.302832 CGCTGCTGTTTCCTCCCTT 60.303 57.895 0.00 0.00 0.00 3.95
4925 5183 1.580845 CGCTGCTGTTTCCTCCCTTG 61.581 60.000 0.00 0.00 0.00 3.61
4926 5184 1.246737 GCTGCTGTTTCCTCCCTTGG 61.247 60.000 0.00 0.00 0.00 3.61
4927 5185 1.228552 TGCTGTTTCCTCCCTTGGC 60.229 57.895 0.00 0.00 0.00 4.52
4928 5186 1.979155 GCTGTTTCCTCCCTTGGCC 60.979 63.158 0.00 0.00 0.00 5.36
4929 5187 1.675641 CTGTTTCCTCCCTTGGCCG 60.676 63.158 0.00 0.00 0.00 6.13
4930 5188 3.062466 GTTTCCTCCCTTGGCCGC 61.062 66.667 0.00 0.00 0.00 6.53
4931 5189 4.360405 TTTCCTCCCTTGGCCGCC 62.360 66.667 1.04 1.04 0.00 6.13
4948 5206 4.680237 CGCCACAGCCAGAACGGA 62.680 66.667 0.00 0.00 36.56 4.69
4963 5221 1.714794 ACGGACTCATTTCTTCTGCG 58.285 50.000 0.00 0.00 0.00 5.18
4964 5222 0.371645 CGGACTCATTTCTTCTGCGC 59.628 55.000 0.00 0.00 0.00 6.09
4965 5223 0.371645 GGACTCATTTCTTCTGCGCG 59.628 55.000 0.00 0.00 0.00 6.86
4966 5224 0.247458 GACTCATTTCTTCTGCGCGC 60.247 55.000 27.26 27.26 0.00 6.86
4967 5225 0.671781 ACTCATTTCTTCTGCGCGCT 60.672 50.000 33.29 5.92 0.00 5.92
4968 5226 0.026027 CTCATTTCTTCTGCGCGCTC 59.974 55.000 33.29 4.38 0.00 5.03
4969 5227 0.390340 TCATTTCTTCTGCGCGCTCT 60.390 50.000 33.29 4.59 0.00 4.09
4970 5228 0.026027 CATTTCTTCTGCGCGCTCTC 59.974 55.000 33.29 3.05 0.00 3.20
4971 5229 0.108424 ATTTCTTCTGCGCGCTCTCT 60.108 50.000 33.29 5.71 0.00 3.10
4972 5230 0.734253 TTTCTTCTGCGCGCTCTCTC 60.734 55.000 33.29 1.73 0.00 3.20
4973 5231 1.590610 TTCTTCTGCGCGCTCTCTCT 61.591 55.000 33.29 0.00 0.00 3.10
4974 5232 1.586042 CTTCTGCGCGCTCTCTCTC 60.586 63.158 33.29 0.00 0.00 3.20
4975 5233 2.935122 CTTCTGCGCGCTCTCTCTCC 62.935 65.000 33.29 0.00 0.00 3.71
4976 5234 4.567385 CTGCGCGCTCTCTCTCCC 62.567 72.222 33.29 0.00 0.00 4.30
4980 5238 2.909965 GCGCTCTCTCTCCCCGAT 60.910 66.667 0.00 0.00 0.00 4.18
4981 5239 2.494530 GCGCTCTCTCTCCCCGATT 61.495 63.158 0.00 0.00 0.00 3.34
4982 5240 1.657556 CGCTCTCTCTCCCCGATTC 59.342 63.158 0.00 0.00 0.00 2.52
4983 5241 1.801309 CGCTCTCTCTCCCCGATTCC 61.801 65.000 0.00 0.00 0.00 3.01
4984 5242 1.468506 GCTCTCTCTCCCCGATTCCC 61.469 65.000 0.00 0.00 0.00 3.97
4985 5243 0.830023 CTCTCTCTCCCCGATTCCCC 60.830 65.000 0.00 0.00 0.00 4.81
4986 5244 2.123425 TCTCTCCCCGATTCCCCG 60.123 66.667 0.00 0.00 0.00 5.73
4987 5245 2.444140 CTCTCCCCGATTCCCCGT 60.444 66.667 0.00 0.00 0.00 5.28
4988 5246 1.152610 CTCTCCCCGATTCCCCGTA 60.153 63.158 0.00 0.00 0.00 4.02
4989 5247 1.456331 TCTCCCCGATTCCCCGTAC 60.456 63.158 0.00 0.00 0.00 3.67
4990 5248 2.444517 TCCCCGATTCCCCGTACC 60.445 66.667 0.00 0.00 0.00 3.34
4991 5249 3.920196 CCCCGATTCCCCGTACCG 61.920 72.222 0.00 0.00 0.00 4.02
4992 5250 4.597215 CCCGATTCCCCGTACCGC 62.597 72.222 0.00 0.00 0.00 5.68
4993 5251 4.597215 CCGATTCCCCGTACCGCC 62.597 72.222 0.00 0.00 0.00 6.13
4994 5252 4.936823 CGATTCCCCGTACCGCCG 62.937 72.222 0.00 0.00 0.00 6.46
5002 5682 2.726274 CGTACCGCCGCCTATCTT 59.274 61.111 0.00 0.00 0.00 2.40
5010 5690 1.369321 CCGCCTATCTTCTCCAGCC 59.631 63.158 0.00 0.00 0.00 4.85
5033 5714 1.679944 CCACGGAGAACAAGATGGCAT 60.680 52.381 0.00 0.00 0.00 4.40
5042 5723 1.746615 AAGATGGCATGAACGCGCT 60.747 52.632 3.81 0.00 0.00 5.92
5076 5767 0.447801 CAATCGTTTGGGCGAAGAGG 59.552 55.000 0.00 0.00 44.38 3.69
5086 5777 3.755628 CGAAGAGGACGGCGGGAA 61.756 66.667 13.24 0.00 0.00 3.97
5099 5790 2.908015 GGGAAGCACATCCGGCTA 59.092 61.111 0.00 0.00 41.66 3.93
5102 5793 0.946221 GGAAGCACATCCGGCTATCG 60.946 60.000 0.00 0.00 41.66 2.92
5138 5829 1.140589 CCTCACTGACTGCCGCTAG 59.859 63.158 0.00 0.00 0.00 3.42
5148 5839 4.598257 GCCGCTAGCACTGAAGAA 57.402 55.556 16.45 0.00 42.97 2.52
5149 5840 2.840974 GCCGCTAGCACTGAAGAAA 58.159 52.632 16.45 0.00 42.97 2.52
5150 5841 0.444260 GCCGCTAGCACTGAAGAAAC 59.556 55.000 16.45 0.00 42.97 2.78
5151 5842 1.795768 CCGCTAGCACTGAAGAAACA 58.204 50.000 16.45 0.00 0.00 2.83
5152 5843 2.143122 CCGCTAGCACTGAAGAAACAA 58.857 47.619 16.45 0.00 0.00 2.83
5153 5844 2.096218 CCGCTAGCACTGAAGAAACAAC 60.096 50.000 16.45 0.00 0.00 3.32
5155 5846 2.096218 GCTAGCACTGAAGAAACAACGG 60.096 50.000 10.63 0.00 0.00 4.44
5157 5848 0.380378 GCACTGAAGAAACAACGGCA 59.620 50.000 0.00 0.00 0.00 5.69
5159 5850 1.670811 CACTGAAGAAACAACGGCAGT 59.329 47.619 0.00 0.00 37.09 4.40
5160 5851 2.097466 CACTGAAGAAACAACGGCAGTT 59.903 45.455 0.00 0.00 42.15 3.16
5161 5852 3.311322 CACTGAAGAAACAACGGCAGTTA 59.689 43.478 0.75 0.00 38.79 2.24
5162 5853 4.024048 CACTGAAGAAACAACGGCAGTTAT 60.024 41.667 0.75 0.00 38.79 1.89
5163 5854 4.578928 ACTGAAGAAACAACGGCAGTTATT 59.421 37.500 0.75 0.00 38.79 1.40
5164 5855 5.103290 TGAAGAAACAACGGCAGTTATTC 57.897 39.130 15.09 15.09 38.79 1.75
5165 5856 4.576873 TGAAGAAACAACGGCAGTTATTCA 59.423 37.500 21.01 14.77 38.79 2.57
5166 5857 4.483476 AGAAACAACGGCAGTTATTCAC 57.517 40.909 21.01 8.95 38.79 3.18
5167 5858 3.880490 AGAAACAACGGCAGTTATTCACA 59.120 39.130 21.01 0.00 38.79 3.58
5168 5859 3.619233 AACAACGGCAGTTATTCACAC 57.381 42.857 0.75 0.00 38.79 3.82
5169 5860 2.566913 ACAACGGCAGTTATTCACACA 58.433 42.857 0.75 0.00 38.79 3.72
5170 5861 2.289547 ACAACGGCAGTTATTCACACAC 59.710 45.455 0.75 0.00 38.79 3.82
5171 5862 2.248280 ACGGCAGTTATTCACACACA 57.752 45.000 0.00 0.00 0.00 3.72
5172 5863 2.566913 ACGGCAGTTATTCACACACAA 58.433 42.857 0.00 0.00 0.00 3.33
5173 5864 2.946329 ACGGCAGTTATTCACACACAAA 59.054 40.909 0.00 0.00 0.00 2.83
5174 5865 3.378742 ACGGCAGTTATTCACACACAAAA 59.621 39.130 0.00 0.00 0.00 2.44
5175 5866 4.142359 ACGGCAGTTATTCACACACAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
5196 5887 3.879351 GAAACAACGGCAGCGGCAG 62.879 63.158 11.88 9.63 43.71 4.85
5219 5910 2.561037 GGTGGTCAGCCCCGTTTTG 61.561 63.158 0.00 0.00 0.00 2.44
5224 5915 1.228124 TCAGCCCCGTTTTGTCCTG 60.228 57.895 0.00 0.00 0.00 3.86
5225 5916 2.597510 AGCCCCGTTTTGTCCTGC 60.598 61.111 0.00 0.00 0.00 4.85
5281 5972 1.302832 GGTTGCCACTCACCTCAGG 60.303 63.158 0.00 0.00 0.00 3.86
5282 5973 1.451936 GTTGCCACTCACCTCAGGT 59.548 57.895 0.00 0.00 35.62 4.00
5284 5975 2.099652 TTGCCACTCACCTCAGGTCG 62.100 60.000 0.00 0.00 31.02 4.79
5286 5977 2.279069 CCACTCACCTCAGGTCGCT 61.279 63.158 0.00 0.00 31.02 4.93
5287 5978 1.214062 CACTCACCTCAGGTCGCTC 59.786 63.158 0.00 0.00 31.02 5.03
5288 5979 1.979693 ACTCACCTCAGGTCGCTCC 60.980 63.158 0.00 0.00 31.02 4.70
5289 5980 2.680352 TCACCTCAGGTCGCTCCC 60.680 66.667 0.00 0.00 31.02 4.30
5292 5983 4.787280 CCTCAGGTCGCTCCCCCT 62.787 72.222 0.00 0.00 36.75 4.79
5294 5985 3.965026 CTCAGGTCGCTCCCCCTCA 62.965 68.421 0.00 0.00 36.75 3.86
5295 5986 2.765807 CAGGTCGCTCCCCCTCAT 60.766 66.667 0.00 0.00 36.75 2.90
5304 6001 1.203237 GCTCCCCCTCATCTGGATAGA 60.203 57.143 0.00 0.00 37.35 1.98
5306 6003 3.310214 GCTCCCCCTCATCTGGATAGATA 60.310 52.174 0.00 0.00 41.71 1.98
5308 6005 5.400769 GCTCCCCCTCATCTGGATAGATATA 60.401 48.000 0.00 0.00 41.71 0.86
5374 6071 2.095969 CGTTTTACATTGCAGGCTTCGA 60.096 45.455 0.00 0.00 0.00 3.71
5375 6072 3.234386 GTTTTACATTGCAGGCTTCGAC 58.766 45.455 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.519906 TCATTCTCCCTTTCCCATTACC 57.480 45.455 0.00 0.00 0.00 2.85
2 3 7.705912 TCTTATCATTCTCCCTTTCCCATTA 57.294 36.000 0.00 0.00 0.00 1.90
3 4 6.596869 TCTTATCATTCTCCCTTTCCCATT 57.403 37.500 0.00 0.00 0.00 3.16
4 5 6.596869 TTCTTATCATTCTCCCTTTCCCAT 57.403 37.500 0.00 0.00 0.00 4.00
5 6 6.401537 TTTCTTATCATTCTCCCTTTCCCA 57.598 37.500 0.00 0.00 0.00 4.37
7 8 9.853177 TTCTATTTCTTATCATTCTCCCTTTCC 57.147 33.333 0.00 0.00 0.00 3.13
112 113 2.700371 CTGGGAAGCTTCTTGGGTTTTT 59.300 45.455 25.05 0.00 0.00 1.94
113 114 2.091333 TCTGGGAAGCTTCTTGGGTTTT 60.091 45.455 25.05 0.00 0.00 2.43
114 115 1.499007 TCTGGGAAGCTTCTTGGGTTT 59.501 47.619 25.05 0.00 0.00 3.27
115 116 1.149101 TCTGGGAAGCTTCTTGGGTT 58.851 50.000 25.05 0.00 0.00 4.11
116 117 1.149101 TTCTGGGAAGCTTCTTGGGT 58.851 50.000 25.05 0.00 0.00 4.51
117 118 1.074566 AGTTCTGGGAAGCTTCTTGGG 59.925 52.381 25.05 13.12 0.00 4.12
118 119 2.157738 CAGTTCTGGGAAGCTTCTTGG 58.842 52.381 25.05 14.71 0.00 3.61
119 120 2.157738 CCAGTTCTGGGAAGCTTCTTG 58.842 52.381 25.05 15.09 0.00 3.02
120 121 1.777272 ACCAGTTCTGGGAAGCTTCTT 59.223 47.619 25.05 0.00 0.00 2.52
121 122 1.439543 ACCAGTTCTGGGAAGCTTCT 58.560 50.000 25.05 1.13 0.00 2.85
122 123 2.355209 CCTACCAGTTCTGGGAAGCTTC 60.355 54.545 18.54 18.54 0.00 3.86
123 124 1.630878 CCTACCAGTTCTGGGAAGCTT 59.369 52.381 20.88 0.00 0.00 3.74
124 125 1.280457 CCTACCAGTTCTGGGAAGCT 58.720 55.000 20.88 4.34 0.00 3.74
125 126 0.253327 CCCTACCAGTTCTGGGAAGC 59.747 60.000 20.88 0.00 42.11 3.86
126 127 1.952621 TCCCTACCAGTTCTGGGAAG 58.047 55.000 20.88 16.60 44.89 3.46
128 129 1.982958 GTTTCCCTACCAGTTCTGGGA 59.017 52.381 20.88 13.07 46.04 4.37
129 130 1.985895 AGTTTCCCTACCAGTTCTGGG 59.014 52.381 20.88 5.38 40.95 4.45
130 131 3.559384 GGAAGTTTCCCTACCAGTTCTGG 60.559 52.174 16.25 16.25 41.62 3.86
131 132 3.676093 GGAAGTTTCCCTACCAGTTCTG 58.324 50.000 0.00 0.00 41.62 3.02
143 144 2.039418 AGCTGGTTTTGGGAAGTTTCC 58.961 47.619 2.17 2.17 46.82 3.13
144 145 3.005472 GGTAGCTGGTTTTGGGAAGTTTC 59.995 47.826 0.00 0.00 0.00 2.78
145 146 2.963101 GGTAGCTGGTTTTGGGAAGTTT 59.037 45.455 0.00 0.00 0.00 2.66
146 147 2.594131 GGTAGCTGGTTTTGGGAAGTT 58.406 47.619 0.00 0.00 0.00 2.66
147 148 1.544759 CGGTAGCTGGTTTTGGGAAGT 60.545 52.381 0.00 0.00 0.00 3.01
148 149 1.165270 CGGTAGCTGGTTTTGGGAAG 58.835 55.000 0.00 0.00 0.00 3.46
149 150 0.766131 TCGGTAGCTGGTTTTGGGAA 59.234 50.000 0.00 0.00 0.00 3.97
150 151 0.766131 TTCGGTAGCTGGTTTTGGGA 59.234 50.000 0.00 0.00 0.00 4.37
151 152 1.165270 CTTCGGTAGCTGGTTTTGGG 58.835 55.000 0.00 0.00 0.00 4.12
152 153 0.521735 GCTTCGGTAGCTGGTTTTGG 59.478 55.000 0.00 0.00 46.77 3.28
162 163 0.608640 ACTTGAGGGTGCTTCGGTAG 59.391 55.000 0.00 0.00 0.00 3.18
163 164 1.547372 GTACTTGAGGGTGCTTCGGTA 59.453 52.381 0.00 0.00 0.00 4.02
164 165 0.320697 GTACTTGAGGGTGCTTCGGT 59.679 55.000 0.00 0.00 0.00 4.69
165 166 0.391263 GGTACTTGAGGGTGCTTCGG 60.391 60.000 0.00 0.00 0.00 4.30
166 167 0.320374 TGGTACTTGAGGGTGCTTCG 59.680 55.000 0.00 0.00 0.00 3.79
167 168 1.348036 ACTGGTACTTGAGGGTGCTTC 59.652 52.381 0.00 0.00 0.00 3.86
168 169 1.435256 ACTGGTACTTGAGGGTGCTT 58.565 50.000 0.00 0.00 0.00 3.91
169 170 1.072331 CAACTGGTACTTGAGGGTGCT 59.928 52.381 0.00 0.00 0.00 4.40
170 171 1.071699 TCAACTGGTACTTGAGGGTGC 59.928 52.381 0.00 0.00 0.00 5.01
171 172 3.703001 ATCAACTGGTACTTGAGGGTG 57.297 47.619 2.92 0.00 31.22 4.61
172 173 3.244911 CCAATCAACTGGTACTTGAGGGT 60.245 47.826 2.92 0.00 31.22 4.34
173 174 3.347216 CCAATCAACTGGTACTTGAGGG 58.653 50.000 2.92 3.41 31.22 4.30
174 175 2.749621 GCCAATCAACTGGTACTTGAGG 59.250 50.000 2.92 1.31 38.86 3.86
175 176 2.749621 GGCCAATCAACTGGTACTTGAG 59.250 50.000 0.00 0.00 38.86 3.02
176 177 2.790433 GGCCAATCAACTGGTACTTGA 58.210 47.619 0.00 0.00 38.86 3.02
177 178 1.468520 CGGCCAATCAACTGGTACTTG 59.531 52.381 2.24 0.00 38.86 3.16
178 179 1.613255 CCGGCCAATCAACTGGTACTT 60.613 52.381 2.24 0.00 38.86 2.24
179 180 0.035439 CCGGCCAATCAACTGGTACT 60.035 55.000 2.24 0.00 38.86 2.73
180 181 1.654023 GCCGGCCAATCAACTGGTAC 61.654 60.000 18.11 0.00 38.86 3.34
181 182 1.377987 GCCGGCCAATCAACTGGTA 60.378 57.895 18.11 0.00 38.86 3.25
182 183 2.676471 GCCGGCCAATCAACTGGT 60.676 61.111 18.11 0.00 38.86 4.00
183 184 3.451894 GGCCGGCCAATCAACTGG 61.452 66.667 40.73 0.00 39.71 4.00
184 185 3.451894 GGGCCGGCCAATCAACTG 61.452 66.667 44.46 0.00 37.98 3.16
189 190 4.947147 TATGCGGGCCGGCCAATC 62.947 66.667 44.46 31.18 37.98 2.67
199 200 4.647615 CGAGGGCTCGTATGCGGG 62.648 72.222 2.62 0.00 46.99 6.13
208 209 0.867086 CGCTAGTAGTACGAGGGCTC 59.133 60.000 13.18 0.00 28.52 4.70
209 210 0.179936 ACGCTAGTAGTACGAGGGCT 59.820 55.000 21.98 10.50 37.30 5.19
210 211 0.585838 GACGCTAGTAGTACGAGGGC 59.414 60.000 21.98 13.67 37.30 5.19
211 212 1.865970 CTGACGCTAGTAGTACGAGGG 59.134 57.143 20.91 20.91 39.13 4.30
212 213 2.284684 CACTGACGCTAGTAGTACGAGG 59.715 54.545 11.77 5.29 0.00 4.63
213 214 2.928757 ACACTGACGCTAGTAGTACGAG 59.071 50.000 6.08 6.08 0.00 4.18
214 215 2.926200 GACACTGACGCTAGTAGTACGA 59.074 50.000 4.47 0.00 0.00 3.43
215 216 2.928757 AGACACTGACGCTAGTAGTACG 59.071 50.000 0.00 0.00 0.00 3.67
216 217 4.026968 CGTAGACACTGACGCTAGTAGTAC 60.027 50.000 0.00 0.00 31.49 2.73
217 218 4.108336 CGTAGACACTGACGCTAGTAGTA 58.892 47.826 0.00 0.00 31.49 1.82
218 219 2.928757 CGTAGACACTGACGCTAGTAGT 59.071 50.000 0.00 0.00 31.49 2.73
219 220 3.185330 TCGTAGACACTGACGCTAGTAG 58.815 50.000 0.00 0.00 38.93 2.57
220 221 3.236632 TCGTAGACACTGACGCTAGTA 57.763 47.619 0.00 0.00 38.93 1.82
221 222 2.090400 TCGTAGACACTGACGCTAGT 57.910 50.000 0.00 0.00 38.93 2.57
222 223 3.466712 TTTCGTAGACACTGACGCTAG 57.533 47.619 0.00 0.00 38.93 3.42
223 224 3.902261 TTTTCGTAGACACTGACGCTA 57.098 42.857 0.00 0.00 38.93 4.26
224 225 2.787601 TTTTCGTAGACACTGACGCT 57.212 45.000 0.00 0.00 38.93 5.07
225 226 2.793232 ACTTTTTCGTAGACACTGACGC 59.207 45.455 0.00 0.00 38.93 5.19
226 227 6.686130 ATTACTTTTTCGTAGACACTGACG 57.314 37.500 0.00 0.00 40.43 4.35
230 231 9.294030 CCGTTATATTACTTTTTCGTAGACACT 57.706 33.333 0.00 0.00 34.32 3.55
231 232 8.534778 CCCGTTATATTACTTTTTCGTAGACAC 58.465 37.037 0.00 0.00 34.32 3.67
232 233 8.250332 ACCCGTTATATTACTTTTTCGTAGACA 58.750 33.333 0.00 0.00 34.32 3.41
233 234 8.634475 ACCCGTTATATTACTTTTTCGTAGAC 57.366 34.615 0.00 0.00 34.32 2.59
234 235 9.730420 GTACCCGTTATATTACTTTTTCGTAGA 57.270 33.333 0.00 0.00 0.00 2.59
235 236 9.736023 AGTACCCGTTATATTACTTTTTCGTAG 57.264 33.333 0.00 0.00 0.00 3.51
241 242 9.702494 GCTCATAGTACCCGTTATATTACTTTT 57.298 33.333 0.00 0.00 0.00 2.27
242 243 8.863086 TGCTCATAGTACCCGTTATATTACTTT 58.137 33.333 0.00 0.00 0.00 2.66
243 244 8.413309 TGCTCATAGTACCCGTTATATTACTT 57.587 34.615 0.00 0.00 0.00 2.24
244 245 8.591114 ATGCTCATAGTACCCGTTATATTACT 57.409 34.615 0.00 0.00 0.00 2.24
245 246 7.642978 CGATGCTCATAGTACCCGTTATATTAC 59.357 40.741 0.00 0.00 0.00 1.89
246 247 7.201758 CCGATGCTCATAGTACCCGTTATATTA 60.202 40.741 0.00 0.00 0.00 0.98
247 248 6.405508 CCGATGCTCATAGTACCCGTTATATT 60.406 42.308 0.00 0.00 0.00 1.28
248 249 5.067413 CCGATGCTCATAGTACCCGTTATAT 59.933 44.000 0.00 0.00 0.00 0.86
249 250 4.397103 CCGATGCTCATAGTACCCGTTATA 59.603 45.833 0.00 0.00 0.00 0.98
250 251 3.192844 CCGATGCTCATAGTACCCGTTAT 59.807 47.826 0.00 0.00 0.00 1.89
251 252 2.555325 CCGATGCTCATAGTACCCGTTA 59.445 50.000 0.00 0.00 0.00 3.18
252 253 1.340248 CCGATGCTCATAGTACCCGTT 59.660 52.381 0.00 0.00 0.00 4.44
253 254 0.959553 CCGATGCTCATAGTACCCGT 59.040 55.000 0.00 0.00 0.00 5.28
254 255 1.244816 TCCGATGCTCATAGTACCCG 58.755 55.000 0.00 0.00 0.00 5.28
255 256 2.610727 GCTTCCGATGCTCATAGTACCC 60.611 54.545 0.00 0.00 0.00 3.69
256 257 2.297597 AGCTTCCGATGCTCATAGTACC 59.702 50.000 2.97 0.00 35.67 3.34
257 258 3.651803 AGCTTCCGATGCTCATAGTAC 57.348 47.619 2.97 0.00 35.67 2.73
258 259 3.188667 CGTAGCTTCCGATGCTCATAGTA 59.811 47.826 11.81 0.00 41.46 1.82
259 260 2.030717 CGTAGCTTCCGATGCTCATAGT 60.031 50.000 11.81 0.00 41.46 2.12
260 261 2.226674 TCGTAGCTTCCGATGCTCATAG 59.773 50.000 11.81 3.72 41.46 2.23
261 262 2.227194 TCGTAGCTTCCGATGCTCATA 58.773 47.619 11.81 0.00 41.46 2.15
262 263 1.032794 TCGTAGCTTCCGATGCTCAT 58.967 50.000 11.81 0.00 41.46 2.90
263 264 0.815095 TTCGTAGCTTCCGATGCTCA 59.185 50.000 11.81 0.00 41.46 4.26
264 265 1.922570 TTTCGTAGCTTCCGATGCTC 58.077 50.000 11.81 4.41 41.46 4.26
265 266 2.380084 TTTTCGTAGCTTCCGATGCT 57.620 45.000 12.92 12.92 43.79 3.79
283 284 9.590451 CATGCTATTACATCATCCAAAAGTTTT 57.410 29.630 0.00 0.00 0.00 2.43
284 285 8.970020 TCATGCTATTACATCATCCAAAAGTTT 58.030 29.630 0.00 0.00 0.00 2.66
285 286 8.523915 TCATGCTATTACATCATCCAAAAGTT 57.476 30.769 0.00 0.00 0.00 2.66
286 287 8.523915 TTCATGCTATTACATCATCCAAAAGT 57.476 30.769 0.00 0.00 0.00 2.66
287 288 9.406828 CATTCATGCTATTACATCATCCAAAAG 57.593 33.333 0.00 0.00 0.00 2.27
288 289 9.134055 TCATTCATGCTATTACATCATCCAAAA 57.866 29.630 0.00 0.00 0.00 2.44
289 290 8.694581 TCATTCATGCTATTACATCATCCAAA 57.305 30.769 0.00 0.00 0.00 3.28
290 291 8.694581 TTCATTCATGCTATTACATCATCCAA 57.305 30.769 0.00 0.00 0.00 3.53
291 292 8.873186 ATTCATTCATGCTATTACATCATCCA 57.127 30.769 0.00 0.00 0.00 3.41
635 636 5.424121 AGTATTAGCAAACGATTGATGGC 57.576 39.130 9.88 0.00 38.94 4.40
636 637 5.049405 GGGAGTATTAGCAAACGATTGATGG 60.049 44.000 9.88 0.00 38.94 3.51
637 638 5.760253 AGGGAGTATTAGCAAACGATTGATG 59.240 40.000 9.88 0.00 38.94 3.07
638 639 5.930135 AGGGAGTATTAGCAAACGATTGAT 58.070 37.500 9.88 5.39 38.94 2.57
639 640 5.353394 AGGGAGTATTAGCAAACGATTGA 57.647 39.130 9.88 0.00 38.94 2.57
640 641 5.276868 CGAAGGGAGTATTAGCAAACGATTG 60.277 44.000 0.29 0.29 39.65 2.67
641 642 4.809426 CGAAGGGAGTATTAGCAAACGATT 59.191 41.667 0.00 0.00 0.00 3.34
642 643 4.142004 ACGAAGGGAGTATTAGCAAACGAT 60.142 41.667 0.00 0.00 0.00 3.73
643 644 3.194116 ACGAAGGGAGTATTAGCAAACGA 59.806 43.478 0.00 0.00 0.00 3.85
644 645 3.518590 ACGAAGGGAGTATTAGCAAACG 58.481 45.455 0.00 0.00 0.00 3.60
645 646 3.869832 GGACGAAGGGAGTATTAGCAAAC 59.130 47.826 0.00 0.00 0.00 2.93
646 647 3.118519 GGGACGAAGGGAGTATTAGCAAA 60.119 47.826 0.00 0.00 0.00 3.68
647 648 2.433239 GGGACGAAGGGAGTATTAGCAA 59.567 50.000 0.00 0.00 0.00 3.91
648 649 2.037144 GGGACGAAGGGAGTATTAGCA 58.963 52.381 0.00 0.00 0.00 3.49
649 650 2.816204 GGGACGAAGGGAGTATTAGC 57.184 55.000 0.00 0.00 0.00 3.09
664 665 6.256912 AGATCGAGATAAGTAATTCGGGAC 57.743 41.667 0.00 0.00 34.08 4.46
665 666 7.392418 TCTAGATCGAGATAAGTAATTCGGGA 58.608 38.462 0.81 0.00 34.08 5.14
666 667 7.612668 TCTAGATCGAGATAAGTAATTCGGG 57.387 40.000 0.81 0.00 34.08 5.14
667 668 8.723311 AGTTCTAGATCGAGATAAGTAATTCGG 58.277 37.037 6.35 0.00 34.08 4.30
678 679 9.881529 GACGTATTTTTAGTTCTAGATCGAGAT 57.118 33.333 6.35 0.00 0.00 2.75
679 680 9.107177 AGACGTATTTTTAGTTCTAGATCGAGA 57.893 33.333 0.81 0.81 0.00 4.04
700 701 9.477484 GTGATAAGAATGGATGTATTTAGACGT 57.523 33.333 0.00 0.00 0.00 4.34
701 702 9.476202 TGTGATAAGAATGGATGTATTTAGACG 57.524 33.333 0.00 0.00 0.00 4.18
710 711 8.830580 CGAATTACTTGTGATAAGAATGGATGT 58.169 33.333 0.00 0.00 0.00 3.06
711 712 8.285394 CCGAATTACTTGTGATAAGAATGGATG 58.715 37.037 0.00 0.00 0.00 3.51
712 713 7.445402 CCCGAATTACTTGTGATAAGAATGGAT 59.555 37.037 0.00 0.00 0.00 3.41
713 714 6.765989 CCCGAATTACTTGTGATAAGAATGGA 59.234 38.462 0.00 0.00 0.00 3.41
714 715 6.765989 TCCCGAATTACTTGTGATAAGAATGG 59.234 38.462 0.00 0.00 0.00 3.16
715 716 7.279981 TGTCCCGAATTACTTGTGATAAGAATG 59.720 37.037 0.00 0.00 0.00 2.67
716 717 7.335627 TGTCCCGAATTACTTGTGATAAGAAT 58.664 34.615 0.00 0.00 0.00 2.40
717 718 6.703319 TGTCCCGAATTACTTGTGATAAGAA 58.297 36.000 0.00 0.00 0.00 2.52
718 719 6.288941 TGTCCCGAATTACTTGTGATAAGA 57.711 37.500 0.00 0.00 0.00 2.10
719 720 6.978343 TTGTCCCGAATTACTTGTGATAAG 57.022 37.500 0.00 0.00 0.00 1.73
720 721 6.373216 CCTTTGTCCCGAATTACTTGTGATAA 59.627 38.462 0.00 0.00 0.00 1.75
721 722 5.878116 CCTTTGTCCCGAATTACTTGTGATA 59.122 40.000 0.00 0.00 0.00 2.15
722 723 4.700213 CCTTTGTCCCGAATTACTTGTGAT 59.300 41.667 0.00 0.00 0.00 3.06
723 724 4.069304 CCTTTGTCCCGAATTACTTGTGA 58.931 43.478 0.00 0.00 0.00 3.58
724 725 3.190535 CCCTTTGTCCCGAATTACTTGTG 59.809 47.826 0.00 0.00 0.00 3.33
725 726 3.073356 TCCCTTTGTCCCGAATTACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
726 727 3.681593 TCCCTTTGTCCCGAATTACTTG 58.318 45.455 0.00 0.00 0.00 3.16
727 728 3.329814 ACTCCCTTTGTCCCGAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
728 729 2.910977 ACTCCCTTTGTCCCGAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
729 730 3.268330 GACTCCCTTTGTCCCGAATTAC 58.732 50.000 0.00 0.00 0.00 1.89
730 731 2.237893 GGACTCCCTTTGTCCCGAATTA 59.762 50.000 1.76 0.00 46.01 1.40
731 732 1.004394 GGACTCCCTTTGTCCCGAATT 59.996 52.381 1.76 0.00 46.01 2.17
732 733 0.618981 GGACTCCCTTTGTCCCGAAT 59.381 55.000 1.76 0.00 46.01 3.34
733 734 2.063774 GGACTCCCTTTGTCCCGAA 58.936 57.895 1.76 0.00 46.01 4.30
734 735 3.801620 GGACTCCCTTTGTCCCGA 58.198 61.111 1.76 0.00 46.01 5.14
738 739 7.110155 TGATGTTTAATAGGACTCCCTTTGTC 58.890 38.462 0.00 0.00 40.78 3.18
739 740 7.027874 TGATGTTTAATAGGACTCCCTTTGT 57.972 36.000 0.00 0.00 40.78 2.83
740 741 7.112779 ACTGATGTTTAATAGGACTCCCTTTG 58.887 38.462 0.00 0.00 40.78 2.77
741 742 7.272144 ACTGATGTTTAATAGGACTCCCTTT 57.728 36.000 0.00 0.00 40.78 3.11
742 743 6.893020 ACTGATGTTTAATAGGACTCCCTT 57.107 37.500 0.00 0.00 40.78 3.95
743 744 7.016661 CCATACTGATGTTTAATAGGACTCCCT 59.983 40.741 0.00 0.00 46.62 4.20
744 745 7.162082 CCATACTGATGTTTAATAGGACTCCC 58.838 42.308 0.00 0.00 0.00 4.30
745 746 7.162082 CCCATACTGATGTTTAATAGGACTCC 58.838 42.308 0.00 0.00 0.00 3.85
746 747 6.651225 GCCCATACTGATGTTTAATAGGACTC 59.349 42.308 0.00 0.00 0.00 3.36
747 748 6.534634 GCCCATACTGATGTTTAATAGGACT 58.465 40.000 0.00 0.00 0.00 3.85
748 749 5.408604 CGCCCATACTGATGTTTAATAGGAC 59.591 44.000 0.00 0.00 0.00 3.85
749 750 5.305902 TCGCCCATACTGATGTTTAATAGGA 59.694 40.000 0.00 0.00 0.00 2.94
759 760 4.686972 CCTATGTATCGCCCATACTGATG 58.313 47.826 2.92 0.00 38.64 3.07
767 769 1.000060 GTTACGCCTATGTATCGCCCA 60.000 52.381 0.00 0.00 0.00 5.36
781 783 4.150098 CGAGGCAAGATATTTAGGTTACGC 59.850 45.833 0.00 0.00 0.00 4.42
786 788 3.314693 TCCCGAGGCAAGATATTTAGGT 58.685 45.455 0.00 0.00 0.00 3.08
789 791 3.005472 CGACTCCCGAGGCAAGATATTTA 59.995 47.826 0.00 0.00 41.76 1.40
793 795 1.107538 CCGACTCCCGAGGCAAGATA 61.108 60.000 0.00 0.00 41.76 1.98
794 796 2.427245 CCGACTCCCGAGGCAAGAT 61.427 63.158 0.00 0.00 41.76 2.40
795 797 3.068691 CCGACTCCCGAGGCAAGA 61.069 66.667 0.00 0.00 41.76 3.02
796 798 4.148825 CCCGACTCCCGAGGCAAG 62.149 72.222 0.00 0.00 41.76 4.01
797 799 4.689549 TCCCGACTCCCGAGGCAA 62.690 66.667 0.00 0.00 41.76 4.52
806 808 3.462678 GACTGGCCCTCCCGACTC 61.463 72.222 0.00 0.00 35.87 3.36
827 831 2.203877 TAGGCCCACGACCAACCT 60.204 61.111 0.00 0.00 34.42 3.50
830 834 2.601067 TCGTAGGCCCACGACCAA 60.601 61.111 22.84 0.00 45.45 3.67
858 862 0.810823 TTACCGGCGGGCTTATTTCG 60.811 55.000 31.78 0.20 36.48 3.46
871 875 2.125269 CCTCGTGGGCTTTACCGG 60.125 66.667 0.00 0.00 40.62 5.28
872 876 0.107848 ATTCCTCGTGGGCTTTACCG 60.108 55.000 3.23 0.00 40.62 4.02
875 879 4.764050 TTATGATTCCTCGTGGGCTTTA 57.236 40.909 3.23 0.00 34.39 1.85
946 950 2.511403 GGGATTTCGCCCTCCCTC 59.489 66.667 8.32 0.00 46.55 4.30
1083 1088 4.944372 GCGGCGGGATCGTACTGG 62.944 72.222 9.78 0.00 38.89 4.00
1332 1339 4.661222 TCATGCTCTACATTTTTGGTGGA 58.339 39.130 0.00 0.00 36.64 4.02
1439 1447 6.222389 CCAACTTTATGTGAGATTGGCAAAA 58.778 36.000 3.01 0.00 30.94 2.44
1440 1448 5.782047 CCAACTTTATGTGAGATTGGCAAA 58.218 37.500 3.01 0.00 30.94 3.68
1472 1480 3.464111 GCAATGCCTAGATTTGCCAAT 57.536 42.857 11.11 0.00 39.80 3.16
1698 1709 1.827789 GGCACACCTGCAAGAACCA 60.828 57.895 0.00 0.00 46.28 3.67
1767 1778 3.281727 TGGTTCTTCCTGTATGGCATC 57.718 47.619 1.65 0.00 37.07 3.91
1783 1794 1.916181 CCATGGTAGAGACCCTTGGTT 59.084 52.381 2.57 0.00 46.32 3.67
1789 1800 2.507407 TTTTGCCATGGTAGAGACCC 57.493 50.000 14.67 0.00 46.32 4.46
1807 1818 2.549563 CGGAGCTCATACTGGCATGATT 60.550 50.000 17.19 0.00 34.50 2.57
1833 1844 2.373707 GGGACATGAGCTCCAGCCT 61.374 63.158 12.15 0.00 43.38 4.58
1834 1845 2.191641 GGGACATGAGCTCCAGCC 59.808 66.667 12.15 7.34 43.38 4.85
2152 2163 1.347817 GCGACTGAACAGGCTCTTCG 61.348 60.000 6.11 6.73 33.16 3.79
2304 2315 4.622701 AGCTCACAAAAATATCGAAGGC 57.377 40.909 0.00 0.00 0.00 4.35
2309 2320 6.690098 CCTCAATGAAGCTCACAAAAATATCG 59.310 38.462 0.00 0.00 0.00 2.92
2316 2327 4.356405 TCTCCTCAATGAAGCTCACAAA 57.644 40.909 0.00 0.00 0.00 2.83
2413 2424 2.739379 GTCTCCTTCTGCTTAGCACAAC 59.261 50.000 1.39 0.00 33.79 3.32
2683 2694 0.322277 AAGCATCAGCACTGAGGTGG 60.322 55.000 13.25 1.59 45.66 4.61
2972 2987 5.984926 TCATCAATTCAAACAAAGTGGAAGC 59.015 36.000 0.00 0.00 0.00 3.86
2973 2989 6.421801 GGTCATCAATTCAAACAAAGTGGAAG 59.578 38.462 0.00 0.00 0.00 3.46
2991 3007 0.753848 CCCTGCATGCATGGTCATCA 60.754 55.000 28.28 15.13 0.00 3.07
3091 3107 0.247736 GTCCTCGACACAATCAGGCT 59.752 55.000 0.00 0.00 32.09 4.58
3104 3120 1.464734 TCTTCTACCTGCTGTCCTCG 58.535 55.000 0.00 0.00 0.00 4.63
3198 3253 9.703892 CAATAGACTAGATGGTTCCTATTGAAG 57.296 37.037 12.13 0.00 42.57 3.02
3199 3254 8.150945 GCAATAGACTAGATGGTTCCTATTGAA 58.849 37.037 18.49 0.00 42.57 2.69
3200 3255 7.510685 AGCAATAGACTAGATGGTTCCTATTGA 59.489 37.037 18.49 0.00 42.57 2.57
3201 3256 7.675062 AGCAATAGACTAGATGGTTCCTATTG 58.325 38.462 0.00 0.00 42.71 1.90
3202 3257 7.863901 AGCAATAGACTAGATGGTTCCTATT 57.136 36.000 0.00 0.00 0.00 1.73
3203 3258 7.863901 AAGCAATAGACTAGATGGTTCCTAT 57.136 36.000 0.00 0.00 0.00 2.57
3204 3259 8.777578 TTAAGCAATAGACTAGATGGTTCCTA 57.222 34.615 15.02 4.62 35.39 2.94
3205 3260 7.676683 TTAAGCAATAGACTAGATGGTTCCT 57.323 36.000 15.02 0.79 35.39 3.36
3206 3261 8.910351 ATTTAAGCAATAGACTAGATGGTTCC 57.090 34.615 15.02 0.00 35.39 3.62
3207 3262 8.704234 CGATTTAAGCAATAGACTAGATGGTTC 58.296 37.037 15.02 4.99 35.39 3.62
3208 3263 8.204836 ACGATTTAAGCAATAGACTAGATGGTT 58.795 33.333 15.59 15.59 37.31 3.67
3209 3264 7.653713 CACGATTTAAGCAATAGACTAGATGGT 59.346 37.037 0.00 0.00 0.00 3.55
3210 3265 7.359598 GCACGATTTAAGCAATAGACTAGATGG 60.360 40.741 0.00 0.00 0.00 3.51
3211 3266 7.169813 TGCACGATTTAAGCAATAGACTAGATG 59.830 37.037 0.00 0.00 34.97 2.90
3212 3267 7.210174 TGCACGATTTAAGCAATAGACTAGAT 58.790 34.615 0.00 0.00 34.97 1.98
3213 3268 6.569780 TGCACGATTTAAGCAATAGACTAGA 58.430 36.000 0.00 0.00 34.97 2.43
3214 3269 6.828502 TGCACGATTTAAGCAATAGACTAG 57.171 37.500 0.00 0.00 34.97 2.57
3215 3270 6.292865 GCATGCACGATTTAAGCAATAGACTA 60.293 38.462 14.21 0.00 42.15 2.59
3216 3271 5.504665 GCATGCACGATTTAAGCAATAGACT 60.505 40.000 14.21 0.00 42.15 3.24
3217 3272 4.672413 GCATGCACGATTTAAGCAATAGAC 59.328 41.667 14.21 0.00 42.15 2.59
3218 3273 4.576053 AGCATGCACGATTTAAGCAATAGA 59.424 37.500 21.98 0.00 42.15 1.98
3219 3274 4.852138 AGCATGCACGATTTAAGCAATAG 58.148 39.130 21.98 0.00 42.15 1.73
3220 3275 4.898829 AGCATGCACGATTTAAGCAATA 57.101 36.364 21.98 0.00 42.15 1.90
3221 3276 3.788333 AGCATGCACGATTTAAGCAAT 57.212 38.095 21.98 0.00 42.15 3.56
3222 3277 3.057666 TGAAGCATGCACGATTTAAGCAA 60.058 39.130 21.98 0.00 42.15 3.91
3223 3278 2.487372 TGAAGCATGCACGATTTAAGCA 59.513 40.909 21.98 0.00 43.14 3.91
3224 3279 3.135414 TGAAGCATGCACGATTTAAGC 57.865 42.857 21.98 0.00 0.00 3.09
3225 3280 5.911280 CCTATTGAAGCATGCACGATTTAAG 59.089 40.000 21.98 11.96 0.00 1.85
3226 3281 5.588246 TCCTATTGAAGCATGCACGATTTAA 59.412 36.000 21.98 8.69 0.00 1.52
3227 3282 5.122519 TCCTATTGAAGCATGCACGATTTA 58.877 37.500 21.98 0.00 0.00 1.40
3228 3283 3.947196 TCCTATTGAAGCATGCACGATTT 59.053 39.130 21.98 4.39 0.00 2.17
3229 3284 3.544684 TCCTATTGAAGCATGCACGATT 58.455 40.909 21.98 4.83 0.00 3.34
3230 3285 3.198409 TCCTATTGAAGCATGCACGAT 57.802 42.857 21.98 19.16 0.00 3.73
3231 3286 2.677836 GTTCCTATTGAAGCATGCACGA 59.322 45.455 21.98 13.48 32.37 4.35
3232 3287 3.056952 GTTCCTATTGAAGCATGCACG 57.943 47.619 21.98 0.86 32.37 5.34
3292 3353 5.736824 TCAATTCGTATTAAAGCATGCAACG 59.263 36.000 21.98 17.62 0.00 4.10
3593 3654 7.222999 AGCACGCAGTACTAAGAATTATCTTTC 59.777 37.037 0.00 0.00 40.72 2.62
3594 3655 7.010552 CAGCACGCAGTACTAAGAATTATCTTT 59.989 37.037 0.00 0.00 40.72 2.52
3675 3736 2.203337 GCAGTGTCTTGCCACCCA 60.203 61.111 0.00 0.00 38.13 4.51
3688 3749 6.954102 ACAATTAGATTTTCTTTAGGGGCAGT 59.046 34.615 0.00 0.00 0.00 4.40
4200 4262 4.797743 TCAGGAGAGTACAGCACAGATAT 58.202 43.478 0.00 0.00 0.00 1.63
4312 4379 8.871125 AGAAGAGAAAGACTAATCCAACTTACA 58.129 33.333 0.00 0.00 0.00 2.41
4349 4416 9.861138 TTTTCAAATTCAAATTTAATGCACGAG 57.139 25.926 0.00 0.00 36.52 4.18
4386 4453 3.257469 TGAACCAAACATTTGCAGCAA 57.743 38.095 2.83 2.83 36.86 3.91
4481 4730 1.003718 AAAGGGCCGACACTACAGC 60.004 57.895 0.00 0.00 0.00 4.40
4488 4745 1.351017 AGAATCTTCAAAGGGCCGACA 59.649 47.619 0.00 0.00 0.00 4.35
4492 4749 3.013219 GTCTCAGAATCTTCAAAGGGCC 58.987 50.000 0.00 0.00 0.00 5.80
4496 4753 7.549842 AGTCATCATGTCTCAGAATCTTCAAAG 59.450 37.037 0.00 0.00 0.00 2.77
4503 4760 6.339730 ACAAGAGTCATCATGTCTCAGAATC 58.660 40.000 13.51 0.00 31.97 2.52
4557 4814 2.896168 TCCGTTGATGAATCGGGTTAC 58.104 47.619 0.00 0.00 43.75 2.50
4560 4817 2.483014 TTTCCGTTGATGAATCGGGT 57.517 45.000 0.00 0.00 43.75 5.28
4561 4818 4.104776 CAATTTTCCGTTGATGAATCGGG 58.895 43.478 0.00 0.00 43.75 5.14
4583 4840 6.595772 AGAAACAACGATGATTCTATGCTC 57.404 37.500 15.05 0.00 44.16 4.26
4591 4848 7.305993 GCGAAAAGAAAAGAAACAACGATGATT 60.306 33.333 0.00 0.00 0.00 2.57
4592 4849 6.142320 GCGAAAAGAAAAGAAACAACGATGAT 59.858 34.615 0.00 0.00 0.00 2.45
4663 4921 6.357240 GCGTAAACAACAACTCAATCTTCTTC 59.643 38.462 0.00 0.00 0.00 2.87
4842 5100 2.787567 GGAGGAGACGCTGGGCTAC 61.788 68.421 0.00 0.00 0.00 3.58
4865 5123 4.214327 GAGAGGGAAGAGGCGGCG 62.214 72.222 0.51 0.51 0.00 6.46
4866 5124 3.855853 GGAGAGGGAAGAGGCGGC 61.856 72.222 0.00 0.00 0.00 6.53
4867 5125 3.157949 GGGAGAGGGAAGAGGCGG 61.158 72.222 0.00 0.00 0.00 6.13
4903 5161 2.328099 GGAGGAAACAGCAGCGGTG 61.328 63.158 10.98 10.98 37.06 4.94
4904 5162 2.032681 GGAGGAAACAGCAGCGGT 59.967 61.111 0.00 0.00 0.00 5.68
4909 5167 1.228552 GCCAAGGGAGGAAACAGCA 60.229 57.895 0.00 0.00 0.00 4.41
4912 5170 2.434331 CGGCCAAGGGAGGAAACA 59.566 61.111 2.24 0.00 0.00 2.83
4913 5171 3.062466 GCGGCCAAGGGAGGAAAC 61.062 66.667 2.24 0.00 0.00 2.78
4914 5172 4.360405 GGCGGCCAAGGGAGGAAA 62.360 66.667 15.62 0.00 0.00 3.13
4931 5189 4.680237 TCCGTTCTGGCTGTGGCG 62.680 66.667 0.00 0.00 39.81 5.69
4932 5190 3.050275 GTCCGTTCTGGCTGTGGC 61.050 66.667 0.00 0.00 37.80 5.01
4933 5191 1.374758 GAGTCCGTTCTGGCTGTGG 60.375 63.158 0.00 0.00 37.80 4.17
4934 5192 0.036952 ATGAGTCCGTTCTGGCTGTG 60.037 55.000 0.00 0.00 37.80 3.66
4935 5193 0.687354 AATGAGTCCGTTCTGGCTGT 59.313 50.000 0.00 0.00 37.80 4.40
4936 5194 1.734465 GAAATGAGTCCGTTCTGGCTG 59.266 52.381 0.00 0.00 37.80 4.85
4937 5195 1.625818 AGAAATGAGTCCGTTCTGGCT 59.374 47.619 4.96 0.00 37.80 4.75
4945 5203 0.371645 GCGCAGAAGAAATGAGTCCG 59.628 55.000 0.30 0.00 0.00 4.79
4948 5206 0.671781 AGCGCGCAGAAGAAATGAGT 60.672 50.000 35.10 3.94 0.00 3.41
4963 5221 2.414840 GAATCGGGGAGAGAGAGCGC 62.415 65.000 0.00 0.00 0.00 5.92
4964 5222 1.657556 GAATCGGGGAGAGAGAGCG 59.342 63.158 0.00 0.00 0.00 5.03
4965 5223 1.468506 GGGAATCGGGGAGAGAGAGC 61.469 65.000 0.00 0.00 0.00 4.09
4966 5224 0.830023 GGGGAATCGGGGAGAGAGAG 60.830 65.000 0.00 0.00 0.00 3.20
4967 5225 1.233369 GGGGAATCGGGGAGAGAGA 59.767 63.158 0.00 0.00 0.00 3.10
4968 5226 2.203771 CGGGGAATCGGGGAGAGAG 61.204 68.421 0.00 0.00 0.00 3.20
4969 5227 1.648302 TACGGGGAATCGGGGAGAGA 61.648 60.000 0.00 0.00 0.00 3.10
4970 5228 1.152610 TACGGGGAATCGGGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
4971 5229 1.456331 GTACGGGGAATCGGGGAGA 60.456 63.158 0.00 0.00 0.00 3.71
4972 5230 2.505167 GGTACGGGGAATCGGGGAG 61.505 68.421 0.00 0.00 0.00 4.30
4973 5231 2.444517 GGTACGGGGAATCGGGGA 60.445 66.667 0.00 0.00 0.00 4.81
4986 5244 0.039346 GAGAAGATAGGCGGCGGTAC 60.039 60.000 9.78 0.00 0.00 3.34
4987 5245 1.177256 GGAGAAGATAGGCGGCGGTA 61.177 60.000 9.78 0.00 0.00 4.02
4988 5246 2.499827 GGAGAAGATAGGCGGCGGT 61.500 63.158 9.78 0.00 0.00 5.68
4989 5247 2.340443 GGAGAAGATAGGCGGCGG 59.660 66.667 9.78 0.00 0.00 6.13
4990 5248 1.006805 CTGGAGAAGATAGGCGGCG 60.007 63.158 0.51 0.51 0.00 6.46
4991 5249 1.301322 GCTGGAGAAGATAGGCGGC 60.301 63.158 0.00 0.00 0.00 6.53
4992 5250 1.118356 AGGCTGGAGAAGATAGGCGG 61.118 60.000 0.00 0.00 41.36 6.13
4993 5251 0.755686 AAGGCTGGAGAAGATAGGCG 59.244 55.000 0.00 0.00 41.36 5.52
4994 5252 1.071542 GGAAGGCTGGAGAAGATAGGC 59.928 57.143 0.00 0.00 37.28 3.93
4997 5677 1.757118 CGTGGAAGGCTGGAGAAGATA 59.243 52.381 0.00 0.00 0.00 1.98
5002 5682 2.119611 TCCGTGGAAGGCTGGAGA 59.880 61.111 0.00 0.00 0.00 3.71
5010 5690 2.350522 CCATCTTGTTCTCCGTGGAAG 58.649 52.381 0.00 0.00 0.00 3.46
5033 5714 4.942481 ACTCGTGCAGCGCGTTCA 62.942 61.111 26.71 8.13 34.61 3.18
5042 5723 1.795768 GATTGGACTCAACTCGTGCA 58.204 50.000 0.00 0.00 35.48 4.57
5045 5726 2.800544 CAAACGATTGGACTCAACTCGT 59.199 45.455 0.00 0.00 42.67 4.18
5046 5727 3.439932 CAAACGATTGGACTCAACTCG 57.560 47.619 0.00 0.00 38.54 4.18
5076 5767 3.195698 GATGTGCTTCCCGCCGTC 61.196 66.667 0.00 0.00 38.05 4.79
5097 5788 1.694150 TCATTCCTTGGCCTCCGATAG 59.306 52.381 3.32 0.00 0.00 2.08
5099 5790 0.918983 TTCATTCCTTGGCCTCCGAT 59.081 50.000 3.32 0.00 0.00 4.18
5102 5793 1.697284 GGATTCATTCCTTGGCCTCC 58.303 55.000 3.32 0.00 41.78 4.30
5138 5829 0.380378 TGCCGTTGTTTCTTCAGTGC 59.620 50.000 0.00 0.00 0.00 4.40
5145 5836 3.880490 TGTGAATAACTGCCGTTGTTTCT 59.120 39.130 3.49 0.00 35.05 2.52
5146 5837 3.972502 GTGTGAATAACTGCCGTTGTTTC 59.027 43.478 3.49 7.48 35.05 2.78
5148 5839 2.946329 TGTGTGAATAACTGCCGTTGTT 59.054 40.909 3.49 3.09 37.20 2.83
5149 5840 2.289547 GTGTGTGAATAACTGCCGTTGT 59.710 45.455 3.49 0.00 34.59 3.32
5150 5841 2.289274 TGTGTGTGAATAACTGCCGTTG 59.711 45.455 3.49 0.00 34.59 4.10
5151 5842 2.566913 TGTGTGTGAATAACTGCCGTT 58.433 42.857 0.00 0.00 37.15 4.44
5152 5843 2.248280 TGTGTGTGAATAACTGCCGT 57.752 45.000 0.00 0.00 0.00 5.68
5153 5844 3.617540 TTTGTGTGTGAATAACTGCCG 57.382 42.857 0.00 0.00 0.00 5.69
5173 5864 1.555477 CGCTGCCGTTGTTTCTTTTT 58.445 45.000 0.00 0.00 0.00 1.94
5174 5865 0.248866 CCGCTGCCGTTGTTTCTTTT 60.249 50.000 0.00 0.00 0.00 2.27
5175 5866 1.358759 CCGCTGCCGTTGTTTCTTT 59.641 52.632 0.00 0.00 0.00 2.52
5176 5867 3.030652 CCGCTGCCGTTGTTTCTT 58.969 55.556 0.00 0.00 0.00 2.52
5201 5892 2.203437 AAAACGGGGCTGACCACC 60.203 61.111 0.00 0.00 42.91 4.61
5214 5905 4.037690 GCAATATCATCGCAGGACAAAAC 58.962 43.478 0.00 0.00 0.00 2.43
5225 5916 1.959899 GCCGAGGCGCAATATCATCG 61.960 60.000 10.83 6.66 0.00 3.84
5281 5972 2.801631 CCAGATGAGGGGGAGCGAC 61.802 68.421 0.00 0.00 0.00 5.19
5282 5973 2.317992 ATCCAGATGAGGGGGAGCGA 62.318 60.000 0.00 0.00 33.47 4.93
5284 5975 1.203237 TCTATCCAGATGAGGGGGAGC 60.203 57.143 0.00 0.00 33.47 4.70
5286 5977 5.499852 TGTATATCTATCCAGATGAGGGGGA 59.500 44.000 0.00 0.00 41.75 4.81
5287 5978 5.781827 TGTATATCTATCCAGATGAGGGGG 58.218 45.833 0.00 0.00 41.75 5.40
5288 5979 7.927683 ATTGTATATCTATCCAGATGAGGGG 57.072 40.000 0.00 0.00 41.75 4.79
5308 6005 7.550196 AGCAAACAACTTCAGAATCAAAATTGT 59.450 29.630 0.00 0.00 0.00 2.71
5320 6017 5.179045 ACTTCATCAGCAAACAACTTCAG 57.821 39.130 0.00 0.00 0.00 3.02
5353 6050 2.095969 TCGAAGCCTGCAATGTAAAACG 60.096 45.455 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.