Multiple sequence alignment - TraesCS1A01G355700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G355700 chr1A 100.000 2628 0 0 1 2628 538784721 538782094 0.000000e+00 4854.0
1 TraesCS1A01G355700 chr1A 78.933 375 53 11 1304 1656 538775654 538775284 5.660000e-57 231.0
2 TraesCS1A01G355700 chr1D 92.052 1623 119 6 1013 2628 439733200 439734819 0.000000e+00 2274.0
3 TraesCS1A01G355700 chr1D 82.056 992 101 39 825 1794 439726433 439727369 0.000000e+00 774.0
4 TraesCS1A01G355700 chr1D 83.308 653 77 18 1008 1636 439671207 439671851 8.160000e-160 573.0
5 TraesCS1A01G355700 chr1D 79.653 634 120 8 1949 2578 437718962 437718334 5.160000e-122 448.0
6 TraesCS1A01G355700 chr1D 83.004 253 37 3 1304 1550 439739876 439740128 9.470000e-55 224.0
7 TraesCS1A01G355700 chr1D 85.039 127 8 7 353 477 439731995 439732112 4.590000e-23 119.0
8 TraesCS1A01G355700 chr1D 94.595 37 2 0 649 685 439670707 439670743 1.020000e-04 58.4
9 TraesCS1A01G355700 chr1B 93.855 895 49 3 1013 1906 597068652 597069541 0.000000e+00 1343.0
10 TraesCS1A01G355700 chr1B 86.248 749 90 9 1891 2628 597069586 597070332 0.000000e+00 800.0
11 TraesCS1A01G355700 chr1B 81.149 801 107 25 1008 1771 596929156 596929949 1.040000e-168 603.0
12 TraesCS1A01G355700 chr1B 78.116 987 109 61 824 1791 596999365 597000263 6.440000e-146 527.0
13 TraesCS1A01G355700 chr5D 85.693 685 91 5 1941 2623 544627117 544626438 0.000000e+00 715.0
14 TraesCS1A01G355700 chr5D 85.398 678 92 6 1941 2615 80358538 80359211 0.000000e+00 697.0
15 TraesCS1A01G355700 chr5D 82.143 616 85 15 1937 2548 167765223 167764629 3.020000e-139 505.0
16 TraesCS1A01G355700 chr2D 83.739 658 87 8 1941 2596 53491790 53492429 2.890000e-169 604.0
17 TraesCS1A01G355700 chr3B 84.895 523 71 6 2090 2610 434978115 434978631 3.000000e-144 521.0
18 TraesCS1A01G355700 chr3A 82.205 517 69 13 1938 2452 454508962 454509457 8.700000e-115 424.0
19 TraesCS1A01G355700 chr2B 81.432 447 74 9 2186 2628 3277620 3278061 8.940000e-95 357.0
20 TraesCS1A01G355700 chr6D 83.838 99 13 3 1949 2046 27412351 27412255 1.000000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G355700 chr1A 538782094 538784721 2627 True 4854.0 4854 100.0000 1 2628 1 chr1A.!!$R2 2627
1 TraesCS1A01G355700 chr1D 439731995 439734819 2824 False 1196.5 2274 88.5455 353 2628 2 chr1D.!!$F4 2275
2 TraesCS1A01G355700 chr1D 439726433 439727369 936 False 774.0 774 82.0560 825 1794 1 chr1D.!!$F1 969
3 TraesCS1A01G355700 chr1D 437718334 437718962 628 True 448.0 448 79.6530 1949 2578 1 chr1D.!!$R1 629
4 TraesCS1A01G355700 chr1D 439670707 439671851 1144 False 315.7 573 88.9515 649 1636 2 chr1D.!!$F3 987
5 TraesCS1A01G355700 chr1B 597068652 597070332 1680 False 1071.5 1343 90.0515 1013 2628 2 chr1B.!!$F3 1615
6 TraesCS1A01G355700 chr1B 596929156 596929949 793 False 603.0 603 81.1490 1008 1771 1 chr1B.!!$F1 763
7 TraesCS1A01G355700 chr1B 596999365 597000263 898 False 527.0 527 78.1160 824 1791 1 chr1B.!!$F2 967
8 TraesCS1A01G355700 chr5D 544626438 544627117 679 True 715.0 715 85.6930 1941 2623 1 chr5D.!!$R2 682
9 TraesCS1A01G355700 chr5D 80358538 80359211 673 False 697.0 697 85.3980 1941 2615 1 chr5D.!!$F1 674
10 TraesCS1A01G355700 chr5D 167764629 167765223 594 True 505.0 505 82.1430 1937 2548 1 chr5D.!!$R1 611
11 TraesCS1A01G355700 chr2D 53491790 53492429 639 False 604.0 604 83.7390 1941 2596 1 chr2D.!!$F1 655
12 TraesCS1A01G355700 chr3B 434978115 434978631 516 False 521.0 521 84.8950 2090 2610 1 chr3B.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 513 0.033796 TAGCTAGGGTGTGCGGTACT 60.034 55.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 3439 0.105453 TCCTAGGGATGGGCAGAGAC 60.105 60.0 9.46 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.720949 AAAGGTTTTTCTAACGGTGCC 57.279 42.857 0.00 0.00 0.00 5.01
21 22 1.232119 AGGTTTTTCTAACGGTGCCG 58.768 50.000 9.29 9.29 46.03 5.69
22 23 0.239082 GGTTTTTCTAACGGTGCCGG 59.761 55.000 15.44 0.00 44.69 6.13
23 24 0.386352 GTTTTTCTAACGGTGCCGGC 60.386 55.000 22.73 22.73 44.69 6.13
24 25 0.818445 TTTTTCTAACGGTGCCGGCA 60.818 50.000 29.03 29.03 44.69 5.69
25 26 0.606944 TTTTCTAACGGTGCCGGCAT 60.607 50.000 35.23 19.82 44.69 4.40
26 27 1.302383 TTTCTAACGGTGCCGGCATG 61.302 55.000 35.23 29.18 44.69 4.06
27 28 2.435938 CTAACGGTGCCGGCATGT 60.436 61.111 35.23 29.89 44.69 3.21
28 29 1.153529 CTAACGGTGCCGGCATGTA 60.154 57.895 35.23 19.93 44.69 2.29
29 30 1.151777 CTAACGGTGCCGGCATGTAG 61.152 60.000 35.23 24.64 44.69 2.74
30 31 1.890625 TAACGGTGCCGGCATGTAGT 61.891 55.000 35.23 25.28 44.69 2.73
31 32 3.195002 CGGTGCCGGCATGTAGTG 61.195 66.667 35.23 14.83 35.56 2.74
32 33 2.824041 GGTGCCGGCATGTAGTGG 60.824 66.667 35.23 0.00 0.00 4.00
33 34 2.046314 GTGCCGGCATGTAGTGGT 60.046 61.111 35.23 0.00 0.00 4.16
34 35 2.046411 TGCCGGCATGTAGTGGTG 60.046 61.111 29.03 0.00 0.00 4.17
35 36 2.267642 GCCGGCATGTAGTGGTGA 59.732 61.111 24.80 0.00 0.00 4.02
36 37 1.376683 GCCGGCATGTAGTGGTGAA 60.377 57.895 24.80 0.00 0.00 3.18
37 38 0.958382 GCCGGCATGTAGTGGTGAAA 60.958 55.000 24.80 0.00 0.00 2.69
38 39 0.802494 CCGGCATGTAGTGGTGAAAC 59.198 55.000 0.00 0.00 0.00 2.78
39 40 1.518325 CGGCATGTAGTGGTGAAACA 58.482 50.000 0.00 0.00 39.98 2.83
40 41 2.083774 CGGCATGTAGTGGTGAAACAT 58.916 47.619 0.00 0.00 39.98 2.71
41 42 2.095853 CGGCATGTAGTGGTGAAACATC 59.904 50.000 0.00 0.00 39.98 3.06
42 43 2.423538 GGCATGTAGTGGTGAAACATCC 59.576 50.000 0.00 0.00 39.98 3.51
43 44 3.081061 GCATGTAGTGGTGAAACATCCA 58.919 45.455 0.00 0.00 39.98 3.41
44 45 3.127548 GCATGTAGTGGTGAAACATCCAG 59.872 47.826 0.00 0.00 39.98 3.86
45 46 2.778299 TGTAGTGGTGAAACATCCAGC 58.222 47.619 0.00 0.00 39.98 4.85
46 47 1.732259 GTAGTGGTGAAACATCCAGCG 59.268 52.381 0.00 0.00 39.98 5.18
47 48 0.108585 AGTGGTGAAACATCCAGCGT 59.891 50.000 0.00 0.00 39.98 5.07
48 49 0.951558 GTGGTGAAACATCCAGCGTT 59.048 50.000 0.00 0.00 39.98 4.84
49 50 0.950836 TGGTGAAACATCCAGCGTTG 59.049 50.000 0.00 0.00 39.98 4.10
50 51 0.240945 GGTGAAACATCCAGCGTTGG 59.759 55.000 12.81 12.81 42.43 3.77
61 62 2.949714 CAGCGTTGGAGTTGTACTTG 57.050 50.000 0.00 0.00 0.00 3.16
62 63 2.479837 CAGCGTTGGAGTTGTACTTGA 58.520 47.619 0.00 0.00 0.00 3.02
63 64 2.476619 CAGCGTTGGAGTTGTACTTGAG 59.523 50.000 0.00 0.00 0.00 3.02
64 65 2.364324 AGCGTTGGAGTTGTACTTGAGA 59.636 45.455 0.00 0.00 0.00 3.27
65 66 3.006967 AGCGTTGGAGTTGTACTTGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
66 67 3.746492 GCGTTGGAGTTGTACTTGAGATT 59.254 43.478 0.00 0.00 0.00 2.40
67 68 4.143094 GCGTTGGAGTTGTACTTGAGATTC 60.143 45.833 0.00 0.00 0.00 2.52
68 69 4.090066 CGTTGGAGTTGTACTTGAGATTCG 59.910 45.833 0.00 0.00 0.00 3.34
69 70 4.866508 TGGAGTTGTACTTGAGATTCGT 57.133 40.909 0.00 0.00 0.00 3.85
70 71 4.556233 TGGAGTTGTACTTGAGATTCGTG 58.444 43.478 0.00 0.00 0.00 4.35
71 72 4.038763 TGGAGTTGTACTTGAGATTCGTGT 59.961 41.667 0.00 0.00 0.00 4.49
72 73 5.242171 TGGAGTTGTACTTGAGATTCGTGTA 59.758 40.000 0.00 0.00 0.00 2.90
73 74 6.071560 TGGAGTTGTACTTGAGATTCGTGTAT 60.072 38.462 0.00 0.00 0.00 2.29
74 75 6.253727 GGAGTTGTACTTGAGATTCGTGTATG 59.746 42.308 0.00 0.00 0.00 2.39
75 76 6.920817 AGTTGTACTTGAGATTCGTGTATGA 58.079 36.000 0.00 0.00 0.00 2.15
76 77 7.030165 AGTTGTACTTGAGATTCGTGTATGAG 58.970 38.462 0.00 0.00 0.00 2.90
77 78 6.753107 TGTACTTGAGATTCGTGTATGAGA 57.247 37.500 0.00 0.00 0.00 3.27
78 79 7.153217 TGTACTTGAGATTCGTGTATGAGAA 57.847 36.000 0.00 0.00 0.00 2.87
79 80 7.599171 TGTACTTGAGATTCGTGTATGAGAAA 58.401 34.615 0.00 0.00 0.00 2.52
80 81 6.952935 ACTTGAGATTCGTGTATGAGAAAC 57.047 37.500 0.00 0.00 0.00 2.78
81 82 6.455647 ACTTGAGATTCGTGTATGAGAAACA 58.544 36.000 0.00 0.00 0.00 2.83
82 83 6.929049 ACTTGAGATTCGTGTATGAGAAACAA 59.071 34.615 0.00 0.00 0.00 2.83
83 84 7.441157 ACTTGAGATTCGTGTATGAGAAACAAA 59.559 33.333 0.00 0.00 0.00 2.83
84 85 7.722795 TGAGATTCGTGTATGAGAAACAAAA 57.277 32.000 0.00 0.00 0.00 2.44
85 86 8.322906 TGAGATTCGTGTATGAGAAACAAAAT 57.677 30.769 0.00 0.00 0.00 1.82
86 87 9.430623 TGAGATTCGTGTATGAGAAACAAAATA 57.569 29.630 0.00 0.00 0.00 1.40
90 91 8.722342 TTCGTGTATGAGAAACAAAATAAAGC 57.278 30.769 0.00 0.00 0.00 3.51
91 92 7.012943 TCGTGTATGAGAAACAAAATAAAGCG 58.987 34.615 0.00 0.00 0.00 4.68
92 93 6.236941 CGTGTATGAGAAACAAAATAAAGCGC 60.237 38.462 0.00 0.00 0.00 5.92
93 94 6.580791 GTGTATGAGAAACAAAATAAAGCGCA 59.419 34.615 11.47 0.00 0.00 6.09
94 95 7.114247 GTGTATGAGAAACAAAATAAAGCGCAA 59.886 33.333 11.47 0.00 0.00 4.85
95 96 6.695292 ATGAGAAACAAAATAAAGCGCAAG 57.305 33.333 11.47 0.00 43.44 4.01
96 97 5.587289 TGAGAAACAAAATAAAGCGCAAGT 58.413 33.333 11.47 0.00 41.68 3.16
97 98 6.730175 TGAGAAACAAAATAAAGCGCAAGTA 58.270 32.000 11.47 0.00 41.68 2.24
98 99 7.197017 TGAGAAACAAAATAAAGCGCAAGTAA 58.803 30.769 11.47 0.00 41.68 2.24
99 100 7.865385 TGAGAAACAAAATAAAGCGCAAGTAAT 59.135 29.630 11.47 0.00 41.68 1.89
100 101 8.587952 AGAAACAAAATAAAGCGCAAGTAATT 57.412 26.923 11.47 0.00 41.68 1.40
101 102 9.685828 AGAAACAAAATAAAGCGCAAGTAATTA 57.314 25.926 11.47 0.00 41.68 1.40
104 105 9.855021 AACAAAATAAAGCGCAAGTAATTATCT 57.145 25.926 11.47 0.00 41.68 1.98
105 106 9.855021 ACAAAATAAAGCGCAAGTAATTATCTT 57.145 25.926 11.47 0.00 41.68 2.40
107 108 8.856490 AAATAAAGCGCAAGTAATTATCTTGG 57.144 30.769 11.47 14.41 41.50 3.61
112 113 4.703897 CGCAAGTAATTATCTTGGGGAGA 58.296 43.478 22.66 0.00 45.53 3.71
113 114 4.752101 CGCAAGTAATTATCTTGGGGAGAG 59.248 45.833 22.66 6.14 45.53 3.20
114 115 5.453339 CGCAAGTAATTATCTTGGGGAGAGA 60.453 44.000 22.66 0.00 45.53 3.10
115 116 5.994668 GCAAGTAATTATCTTGGGGAGAGAG 59.005 44.000 20.01 3.01 41.50 3.20
116 117 6.183361 GCAAGTAATTATCTTGGGGAGAGAGA 60.183 42.308 20.01 0.00 41.50 3.10
117 118 7.474079 GCAAGTAATTATCTTGGGGAGAGAGAT 60.474 40.741 20.01 0.00 41.50 2.75
118 119 7.790782 AGTAATTATCTTGGGGAGAGAGATC 57.209 40.000 0.00 0.00 37.93 2.75
119 120 5.736951 AATTATCTTGGGGAGAGAGATCG 57.263 43.478 0.00 0.00 37.93 3.69
120 121 4.455070 TTATCTTGGGGAGAGAGATCGA 57.545 45.455 0.00 0.00 37.93 3.59
121 122 2.828661 TCTTGGGGAGAGAGATCGAA 57.171 50.000 0.00 0.00 0.00 3.71
122 123 2.379972 TCTTGGGGAGAGAGATCGAAC 58.620 52.381 0.00 0.00 0.00 3.95
123 124 1.410882 CTTGGGGAGAGAGATCGAACC 59.589 57.143 0.00 0.00 0.00 3.62
124 125 0.335019 TGGGGAGAGAGATCGAACCA 59.665 55.000 0.00 0.00 0.00 3.67
125 126 1.062886 TGGGGAGAGAGATCGAACCAT 60.063 52.381 0.00 0.00 0.00 3.55
126 127 1.616374 GGGGAGAGAGATCGAACCATC 59.384 57.143 0.00 0.00 0.00 3.51
127 128 2.593026 GGGAGAGAGATCGAACCATCT 58.407 52.381 0.00 0.00 35.70 2.90
128 129 2.556622 GGGAGAGAGATCGAACCATCTC 59.443 54.545 13.31 13.31 46.53 2.75
132 133 2.879002 GAGATCGAACCATCTCTGCA 57.121 50.000 6.53 0.00 43.88 4.41
133 134 3.383620 GAGATCGAACCATCTCTGCAT 57.616 47.619 6.53 0.00 43.88 3.96
134 135 3.058450 GAGATCGAACCATCTCTGCATG 58.942 50.000 6.53 0.00 43.88 4.06
135 136 1.530293 GATCGAACCATCTCTGCATGC 59.470 52.381 11.82 11.82 0.00 4.06
136 137 0.249955 TCGAACCATCTCTGCATGCA 59.750 50.000 21.29 21.29 0.00 3.96
137 138 1.089112 CGAACCATCTCTGCATGCAA 58.911 50.000 22.88 7.52 0.00 4.08
138 139 1.202110 CGAACCATCTCTGCATGCAAC 60.202 52.381 22.88 4.07 0.00 4.17
139 140 1.814394 GAACCATCTCTGCATGCAACA 59.186 47.619 22.88 10.32 0.00 3.33
140 141 1.913778 ACCATCTCTGCATGCAACAA 58.086 45.000 22.88 9.87 0.00 2.83
141 142 2.453521 ACCATCTCTGCATGCAACAAT 58.546 42.857 22.88 11.80 0.00 2.71
142 143 2.426024 ACCATCTCTGCATGCAACAATC 59.574 45.455 22.88 0.00 0.00 2.67
143 144 2.223735 CCATCTCTGCATGCAACAATCC 60.224 50.000 22.88 0.00 0.00 3.01
144 145 1.089112 TCTCTGCATGCAACAATCCG 58.911 50.000 22.88 8.21 0.00 4.18
145 146 0.806868 CTCTGCATGCAACAATCCGT 59.193 50.000 22.88 0.00 0.00 4.69
146 147 0.804364 TCTGCATGCAACAATCCGTC 59.196 50.000 22.88 0.00 0.00 4.79
147 148 0.179156 CTGCATGCAACAATCCGTCC 60.179 55.000 22.88 0.00 0.00 4.79
148 149 0.608856 TGCATGCAACAATCCGTCCT 60.609 50.000 20.30 0.00 0.00 3.85
149 150 0.527565 GCATGCAACAATCCGTCCTT 59.472 50.000 14.21 0.00 0.00 3.36
150 151 1.733389 GCATGCAACAATCCGTCCTTG 60.733 52.381 14.21 0.00 0.00 3.61
151 152 0.527565 ATGCAACAATCCGTCCTTGC 59.472 50.000 0.00 0.00 39.60 4.01
152 153 0.821301 TGCAACAATCCGTCCTTGCA 60.821 50.000 0.00 0.00 45.13 4.08
153 154 0.527565 GCAACAATCCGTCCTTGCAT 59.472 50.000 0.00 0.00 39.09 3.96
154 155 1.733389 GCAACAATCCGTCCTTGCATG 60.733 52.381 0.00 0.00 39.09 4.06
155 156 0.527565 AACAATCCGTCCTTGCATGC 59.472 50.000 11.82 11.82 0.00 4.06
156 157 1.063006 CAATCCGTCCTTGCATGCG 59.937 57.895 14.09 0.00 0.00 4.73
157 158 1.078497 AATCCGTCCTTGCATGCGA 60.078 52.632 14.09 10.84 0.00 5.10
158 159 0.464373 AATCCGTCCTTGCATGCGAT 60.464 50.000 14.09 4.67 0.00 4.58
159 160 0.882042 ATCCGTCCTTGCATGCGATC 60.882 55.000 14.09 4.22 0.00 3.69
160 161 1.815003 CCGTCCTTGCATGCGATCA 60.815 57.895 14.09 0.00 0.00 2.92
161 162 1.349627 CGTCCTTGCATGCGATCAC 59.650 57.895 14.09 9.51 0.00 3.06
162 163 1.360931 CGTCCTTGCATGCGATCACA 61.361 55.000 14.09 0.00 0.00 3.58
163 164 0.097674 GTCCTTGCATGCGATCACAC 59.902 55.000 14.09 0.87 0.00 3.82
164 165 0.036105 TCCTTGCATGCGATCACACT 60.036 50.000 14.09 0.00 0.00 3.55
165 166 0.376152 CCTTGCATGCGATCACACTC 59.624 55.000 14.09 0.00 0.00 3.51
166 167 1.366679 CTTGCATGCGATCACACTCT 58.633 50.000 14.09 0.00 0.00 3.24
167 168 1.326852 CTTGCATGCGATCACACTCTC 59.673 52.381 14.09 0.00 0.00 3.20
168 169 0.533951 TGCATGCGATCACACTCTCT 59.466 50.000 14.09 0.00 0.00 3.10
169 170 1.066645 TGCATGCGATCACACTCTCTT 60.067 47.619 14.09 0.00 0.00 2.85
170 171 2.005451 GCATGCGATCACACTCTCTTT 58.995 47.619 0.00 0.00 0.00 2.52
171 172 2.417933 GCATGCGATCACACTCTCTTTT 59.582 45.455 0.00 0.00 0.00 2.27
172 173 3.484886 GCATGCGATCACACTCTCTTTTC 60.485 47.826 0.00 0.00 0.00 2.29
173 174 3.667497 TGCGATCACACTCTCTTTTCT 57.333 42.857 0.00 0.00 0.00 2.52
174 175 3.995199 TGCGATCACACTCTCTTTTCTT 58.005 40.909 0.00 0.00 0.00 2.52
175 176 5.134202 TGCGATCACACTCTCTTTTCTTA 57.866 39.130 0.00 0.00 0.00 2.10
176 177 4.923871 TGCGATCACACTCTCTTTTCTTAC 59.076 41.667 0.00 0.00 0.00 2.34
177 178 5.164954 GCGATCACACTCTCTTTTCTTACT 58.835 41.667 0.00 0.00 0.00 2.24
178 179 5.061560 GCGATCACACTCTCTTTTCTTACTG 59.938 44.000 0.00 0.00 0.00 2.74
179 180 6.382608 CGATCACACTCTCTTTTCTTACTGA 58.617 40.000 0.00 0.00 0.00 3.41
180 181 6.306837 CGATCACACTCTCTTTTCTTACTGAC 59.693 42.308 0.00 0.00 0.00 3.51
181 182 6.465439 TCACACTCTCTTTTCTTACTGACA 57.535 37.500 0.00 0.00 0.00 3.58
182 183 6.873997 TCACACTCTCTTTTCTTACTGACAA 58.126 36.000 0.00 0.00 0.00 3.18
183 184 7.327975 TCACACTCTCTTTTCTTACTGACAAA 58.672 34.615 0.00 0.00 0.00 2.83
184 185 7.277981 TCACACTCTCTTTTCTTACTGACAAAC 59.722 37.037 0.00 0.00 0.00 2.93
185 186 6.255887 ACACTCTCTTTTCTTACTGACAAACG 59.744 38.462 0.00 0.00 0.00 3.60
186 187 6.255887 CACTCTCTTTTCTTACTGACAAACGT 59.744 38.462 0.00 0.00 0.00 3.99
187 188 6.476053 ACTCTCTTTTCTTACTGACAAACGTC 59.524 38.462 0.00 0.00 0.00 4.34
188 189 6.570692 TCTCTTTTCTTACTGACAAACGTCT 58.429 36.000 0.00 0.00 34.31 4.18
189 190 7.709947 TCTCTTTTCTTACTGACAAACGTCTA 58.290 34.615 0.00 0.00 34.31 2.59
190 191 7.861372 TCTCTTTTCTTACTGACAAACGTCTAG 59.139 37.037 0.00 0.00 34.31 2.43
191 192 7.486647 TCTTTTCTTACTGACAAACGTCTAGT 58.513 34.615 0.00 0.00 34.31 2.57
192 193 8.623903 TCTTTTCTTACTGACAAACGTCTAGTA 58.376 33.333 0.00 0.00 34.31 1.82
193 194 8.566008 TTTTCTTACTGACAAACGTCTAGTAC 57.434 34.615 0.00 0.00 32.08 2.73
194 195 6.246420 TCTTACTGACAAACGTCTAGTACC 57.754 41.667 0.00 0.00 32.08 3.34
195 196 6.000219 TCTTACTGACAAACGTCTAGTACCT 59.000 40.000 0.00 0.00 32.08 3.08
196 197 4.500603 ACTGACAAACGTCTAGTACCTG 57.499 45.455 0.00 0.00 34.31 4.00
197 198 4.139786 ACTGACAAACGTCTAGTACCTGA 58.860 43.478 0.00 0.00 34.31 3.86
198 199 4.581824 ACTGACAAACGTCTAGTACCTGAA 59.418 41.667 0.00 0.00 34.31 3.02
199 200 5.068198 ACTGACAAACGTCTAGTACCTGAAA 59.932 40.000 0.00 0.00 34.31 2.69
200 201 6.092955 TGACAAACGTCTAGTACCTGAAAT 57.907 37.500 0.00 0.00 34.31 2.17
201 202 6.518493 TGACAAACGTCTAGTACCTGAAATT 58.482 36.000 0.00 0.00 34.31 1.82
202 203 7.660112 TGACAAACGTCTAGTACCTGAAATTA 58.340 34.615 0.00 0.00 34.31 1.40
203 204 8.308931 TGACAAACGTCTAGTACCTGAAATTAT 58.691 33.333 0.00 0.00 34.31 1.28
204 205 8.699283 ACAAACGTCTAGTACCTGAAATTATC 57.301 34.615 0.00 0.00 0.00 1.75
205 206 8.308931 ACAAACGTCTAGTACCTGAAATTATCA 58.691 33.333 0.00 0.00 36.38 2.15
221 222 9.661563 TGAAATTATCAGTTTGTATTCCTACGT 57.338 29.630 0.00 0.00 33.04 3.57
226 227 6.897259 TCAGTTTGTATTCCTACGTATTGC 57.103 37.500 0.00 0.00 0.00 3.56
227 228 6.636705 TCAGTTTGTATTCCTACGTATTGCT 58.363 36.000 0.00 0.00 0.00 3.91
228 229 7.101054 TCAGTTTGTATTCCTACGTATTGCTT 58.899 34.615 0.00 0.00 0.00 3.91
229 230 7.604927 TCAGTTTGTATTCCTACGTATTGCTTT 59.395 33.333 0.00 0.00 0.00 3.51
230 231 8.875803 CAGTTTGTATTCCTACGTATTGCTTTA 58.124 33.333 0.00 0.00 0.00 1.85
231 232 9.439500 AGTTTGTATTCCTACGTATTGCTTTAA 57.561 29.630 0.00 0.00 0.00 1.52
239 240 9.968870 TTCCTACGTATTGCTTTAAAAATTTGT 57.031 25.926 0.00 0.00 0.00 2.83
240 241 9.968870 TCCTACGTATTGCTTTAAAAATTTGTT 57.031 25.926 0.00 0.00 0.00 2.83
261 262 8.943594 TTGTTTACAGAATTTATTACCCAGGT 57.056 30.769 0.00 0.00 0.00 4.00
262 263 8.570068 TGTTTACAGAATTTATTACCCAGGTC 57.430 34.615 0.00 0.00 0.00 3.85
263 264 7.612633 TGTTTACAGAATTTATTACCCAGGTCC 59.387 37.037 0.00 0.00 0.00 4.46
264 265 5.789574 ACAGAATTTATTACCCAGGTCCA 57.210 39.130 0.00 0.00 0.00 4.02
265 266 6.341408 ACAGAATTTATTACCCAGGTCCAT 57.659 37.500 0.00 0.00 0.00 3.41
266 267 6.129179 ACAGAATTTATTACCCAGGTCCATG 58.871 40.000 0.00 0.00 0.00 3.66
267 268 6.129179 CAGAATTTATTACCCAGGTCCATGT 58.871 40.000 0.00 0.00 0.00 3.21
268 269 6.039717 CAGAATTTATTACCCAGGTCCATGTG 59.960 42.308 0.00 0.00 0.00 3.21
269 270 4.938575 TTTATTACCCAGGTCCATGTGT 57.061 40.909 0.00 0.00 0.00 3.72
270 271 2.806945 ATTACCCAGGTCCATGTGTG 57.193 50.000 0.00 0.00 0.00 3.82
271 272 1.735926 TTACCCAGGTCCATGTGTGA 58.264 50.000 0.00 0.00 0.00 3.58
272 273 1.965414 TACCCAGGTCCATGTGTGAT 58.035 50.000 0.00 0.00 0.00 3.06
273 274 0.620556 ACCCAGGTCCATGTGTGATC 59.379 55.000 0.00 0.00 0.00 2.92
274 275 0.620030 CCCAGGTCCATGTGTGATCA 59.380 55.000 0.00 0.00 0.00 2.92
275 276 1.407851 CCCAGGTCCATGTGTGATCAG 60.408 57.143 0.00 0.00 0.00 2.90
276 277 1.556451 CCAGGTCCATGTGTGATCAGA 59.444 52.381 0.00 0.00 0.00 3.27
277 278 2.026915 CCAGGTCCATGTGTGATCAGAA 60.027 50.000 0.00 0.00 0.00 3.02
278 279 3.559811 CCAGGTCCATGTGTGATCAGAAA 60.560 47.826 0.00 0.00 0.00 2.52
279 280 3.438087 CAGGTCCATGTGTGATCAGAAAC 59.562 47.826 0.00 0.00 0.00 2.78
280 281 3.328931 AGGTCCATGTGTGATCAGAAACT 59.671 43.478 0.00 0.00 0.00 2.66
281 282 3.686726 GGTCCATGTGTGATCAGAAACTC 59.313 47.826 0.00 0.00 0.00 3.01
282 283 3.686726 GTCCATGTGTGATCAGAAACTCC 59.313 47.826 0.00 0.00 0.00 3.85
283 284 3.327464 TCCATGTGTGATCAGAAACTCCA 59.673 43.478 0.00 0.00 0.00 3.86
284 285 4.019051 TCCATGTGTGATCAGAAACTCCAT 60.019 41.667 0.00 0.00 0.00 3.41
285 286 4.095932 CCATGTGTGATCAGAAACTCCATG 59.904 45.833 11.36 11.36 0.00 3.66
286 287 4.356405 TGTGTGATCAGAAACTCCATGT 57.644 40.909 0.00 0.00 0.00 3.21
287 288 4.318332 TGTGTGATCAGAAACTCCATGTC 58.682 43.478 0.00 0.00 0.00 3.06
288 289 3.686726 GTGTGATCAGAAACTCCATGTCC 59.313 47.826 0.00 0.00 0.00 4.02
289 290 3.327464 TGTGATCAGAAACTCCATGTCCA 59.673 43.478 0.00 0.00 0.00 4.02
290 291 4.202451 TGTGATCAGAAACTCCATGTCCAA 60.202 41.667 0.00 0.00 0.00 3.53
291 292 4.394300 GTGATCAGAAACTCCATGTCCAAG 59.606 45.833 0.00 0.00 0.00 3.61
292 293 4.286808 TGATCAGAAACTCCATGTCCAAGA 59.713 41.667 0.00 0.00 0.00 3.02
293 294 4.705110 TCAGAAACTCCATGTCCAAGAA 57.295 40.909 0.00 0.00 0.00 2.52
294 295 5.047566 TCAGAAACTCCATGTCCAAGAAA 57.952 39.130 0.00 0.00 0.00 2.52
295 296 5.634118 TCAGAAACTCCATGTCCAAGAAAT 58.366 37.500 0.00 0.00 0.00 2.17
296 297 5.707298 TCAGAAACTCCATGTCCAAGAAATC 59.293 40.000 0.00 0.00 0.00 2.17
297 298 5.709164 CAGAAACTCCATGTCCAAGAAATCT 59.291 40.000 0.00 0.00 0.00 2.40
298 299 6.208204 CAGAAACTCCATGTCCAAGAAATCTT 59.792 38.462 0.00 0.00 36.45 2.40
310 311 4.954092 AAGAAATCTTGAACTCATCGCC 57.046 40.909 0.00 0.00 34.38 5.54
311 312 3.942829 AGAAATCTTGAACTCATCGCCA 58.057 40.909 0.00 0.00 0.00 5.69
312 313 4.521146 AGAAATCTTGAACTCATCGCCAT 58.479 39.130 0.00 0.00 0.00 4.40
313 314 5.674525 AGAAATCTTGAACTCATCGCCATA 58.325 37.500 0.00 0.00 0.00 2.74
314 315 5.525378 AGAAATCTTGAACTCATCGCCATAC 59.475 40.000 0.00 0.00 0.00 2.39
315 316 4.679373 ATCTTGAACTCATCGCCATACT 57.321 40.909 0.00 0.00 0.00 2.12
316 317 4.471904 TCTTGAACTCATCGCCATACTT 57.528 40.909 0.00 0.00 0.00 2.24
317 318 5.592104 TCTTGAACTCATCGCCATACTTA 57.408 39.130 0.00 0.00 0.00 2.24
318 319 5.972935 TCTTGAACTCATCGCCATACTTAA 58.027 37.500 0.00 0.00 0.00 1.85
319 320 5.810587 TCTTGAACTCATCGCCATACTTAAC 59.189 40.000 0.00 0.00 0.00 2.01
320 321 5.339008 TGAACTCATCGCCATACTTAACT 57.661 39.130 0.00 0.00 0.00 2.24
321 322 5.730550 TGAACTCATCGCCATACTTAACTT 58.269 37.500 0.00 0.00 0.00 2.66
322 323 6.869695 TGAACTCATCGCCATACTTAACTTA 58.130 36.000 0.00 0.00 0.00 2.24
323 324 6.755141 TGAACTCATCGCCATACTTAACTTAC 59.245 38.462 0.00 0.00 0.00 2.34
324 325 5.279384 ACTCATCGCCATACTTAACTTACG 58.721 41.667 0.00 0.00 0.00 3.18
325 326 5.163581 ACTCATCGCCATACTTAACTTACGT 60.164 40.000 0.00 0.00 0.00 3.57
326 327 6.038603 ACTCATCGCCATACTTAACTTACGTA 59.961 38.462 0.00 0.00 0.00 3.57
327 328 6.201517 TCATCGCCATACTTAACTTACGTAC 58.798 40.000 0.00 0.00 0.00 3.67
328 329 4.587306 TCGCCATACTTAACTTACGTACG 58.413 43.478 15.01 15.01 0.00 3.67
329 330 4.094294 TCGCCATACTTAACTTACGTACGT 59.906 41.667 25.98 25.98 0.00 3.57
330 331 5.292345 TCGCCATACTTAACTTACGTACGTA 59.708 40.000 23.60 23.60 0.00 3.57
331 332 5.617187 CGCCATACTTAACTTACGTACGTAG 59.383 44.000 25.56 21.02 31.71 3.51
332 333 5.909610 GCCATACTTAACTTACGTACGTAGG 59.090 44.000 29.32 29.32 34.43 3.18
333 334 6.458342 GCCATACTTAACTTACGTACGTAGGT 60.458 42.308 30.52 30.52 41.62 3.08
335 336 7.640240 CCATACTTAACTTACGTACGTAGGTTC 59.360 40.741 41.13 0.00 44.03 3.62
336 337 5.939457 ACTTAACTTACGTACGTAGGTTCC 58.061 41.667 41.13 0.00 44.03 3.62
337 338 3.850122 AACTTACGTACGTAGGTTCCC 57.150 47.619 36.00 0.00 44.03 3.97
338 339 2.092323 ACTTACGTACGTAGGTTCCCC 58.908 52.381 30.52 0.00 37.59 4.81
339 340 1.064060 CTTACGTACGTAGGTTCCCCG 59.936 57.143 25.56 11.56 35.12 5.73
340 341 0.250793 TACGTACGTAGGTTCCCCGA 59.749 55.000 23.60 4.36 35.12 5.14
341 342 0.394352 ACGTACGTAGGTTCCCCGAT 60.394 55.000 21.41 0.00 35.12 4.18
342 343 1.134220 ACGTACGTAGGTTCCCCGATA 60.134 52.381 21.41 0.00 35.12 2.92
343 344 1.946768 CGTACGTAGGTTCCCCGATAA 59.053 52.381 7.22 0.00 35.12 1.75
344 345 2.554032 CGTACGTAGGTTCCCCGATAAT 59.446 50.000 7.22 0.00 35.12 1.28
345 346 3.365364 CGTACGTAGGTTCCCCGATAATC 60.365 52.174 7.22 0.00 35.12 1.75
346 347 1.966354 ACGTAGGTTCCCCGATAATCC 59.034 52.381 0.00 0.00 35.12 3.01
347 348 1.068055 CGTAGGTTCCCCGATAATCCG 60.068 57.143 0.00 0.00 35.12 4.18
348 349 1.966354 GTAGGTTCCCCGATAATCCGT 59.034 52.381 0.00 0.00 35.12 4.69
349 350 2.386829 AGGTTCCCCGATAATCCGTA 57.613 50.000 0.00 0.00 35.12 4.02
350 351 1.966354 AGGTTCCCCGATAATCCGTAC 59.034 52.381 0.00 0.00 35.12 3.67
351 352 1.336240 GGTTCCCCGATAATCCGTACG 60.336 57.143 8.69 8.69 0.00 3.67
364 365 1.418342 CCGTACGATGCCTTGAACGG 61.418 60.000 18.76 0.00 43.20 4.44
394 395 0.754587 TGCATGGTTTCTGGTGCACA 60.755 50.000 20.43 3.92 42.13 4.57
418 419 9.489084 ACATATATGTATGTATGCGTTCAAGTT 57.511 29.630 16.85 0.00 46.91 2.66
419 420 9.745323 CATATATGTATGTATGCGTTCAAGTTG 57.255 33.333 4.43 0.00 34.31 3.16
430 431 1.801178 GTTCAAGTTGGCCTTCTCTCG 59.199 52.381 3.32 0.00 0.00 4.04
432 433 1.416401 TCAAGTTGGCCTTCTCTCGTT 59.584 47.619 3.32 0.00 0.00 3.85
462 463 3.814268 CGGCCCTCGGTTTGCATG 61.814 66.667 0.00 0.00 34.75 4.06
463 464 4.133796 GGCCCTCGGTTTGCATGC 62.134 66.667 11.82 11.82 0.00 4.06
464 465 3.064324 GCCCTCGGTTTGCATGCT 61.064 61.111 20.33 0.00 0.00 3.79
465 466 2.879907 CCCTCGGTTTGCATGCTG 59.120 61.111 20.33 3.78 0.00 4.41
466 467 1.675310 CCCTCGGTTTGCATGCTGA 60.675 57.895 20.33 4.61 0.00 4.26
467 468 1.033746 CCCTCGGTTTGCATGCTGAT 61.034 55.000 20.33 0.00 0.00 2.90
468 469 1.667236 CCTCGGTTTGCATGCTGATA 58.333 50.000 20.33 0.00 0.00 2.15
469 470 2.224606 CCTCGGTTTGCATGCTGATAT 58.775 47.619 20.33 0.00 0.00 1.63
470 471 2.620115 CCTCGGTTTGCATGCTGATATT 59.380 45.455 20.33 0.00 0.00 1.28
471 472 3.304257 CCTCGGTTTGCATGCTGATATTC 60.304 47.826 20.33 2.52 0.00 1.75
473 474 3.313249 TCGGTTTGCATGCTGATATTCAG 59.687 43.478 20.33 0.08 46.90 3.02
490 491 9.379770 TGATATTCAGATCATGGGTTAAGTAGA 57.620 33.333 0.00 0.00 30.75 2.59
491 492 9.868277 GATATTCAGATCATGGGTTAAGTAGAG 57.132 37.037 0.00 0.00 0.00 2.43
492 493 5.537300 TCAGATCATGGGTTAAGTAGAGC 57.463 43.478 0.00 0.00 0.00 4.09
493 494 5.211973 TCAGATCATGGGTTAAGTAGAGCT 58.788 41.667 0.00 0.00 0.00 4.09
494 495 6.373759 TCAGATCATGGGTTAAGTAGAGCTA 58.626 40.000 0.00 0.00 0.00 3.32
495 496 6.491745 TCAGATCATGGGTTAAGTAGAGCTAG 59.508 42.308 0.00 0.00 0.00 3.42
496 497 4.939052 TCATGGGTTAAGTAGAGCTAGC 57.061 45.455 6.62 6.62 0.00 3.42
497 498 4.547671 TCATGGGTTAAGTAGAGCTAGCT 58.452 43.478 19.45 19.45 0.00 3.32
498 499 5.702266 TCATGGGTTAAGTAGAGCTAGCTA 58.298 41.667 19.38 0.00 0.00 3.32
499 500 5.770663 TCATGGGTTAAGTAGAGCTAGCTAG 59.229 44.000 19.38 16.84 0.00 3.42
500 501 4.471548 TGGGTTAAGTAGAGCTAGCTAGG 58.528 47.826 19.38 4.48 0.00 3.02
501 502 3.827876 GGGTTAAGTAGAGCTAGCTAGGG 59.172 52.174 19.38 0.00 0.00 3.53
502 503 4.472496 GGTTAAGTAGAGCTAGCTAGGGT 58.528 47.826 19.38 8.58 0.00 4.34
503 504 4.278919 GGTTAAGTAGAGCTAGCTAGGGTG 59.721 50.000 19.38 0.00 0.00 4.61
504 505 3.673543 AAGTAGAGCTAGCTAGGGTGT 57.326 47.619 19.38 9.52 0.00 4.16
505 506 2.938838 AGTAGAGCTAGCTAGGGTGTG 58.061 52.381 19.38 0.00 0.00 3.82
506 507 1.338655 GTAGAGCTAGCTAGGGTGTGC 59.661 57.143 19.38 7.57 0.00 4.57
507 508 1.066587 GAGCTAGCTAGGGTGTGCG 59.933 63.158 19.38 0.00 0.00 5.34
508 509 2.107141 GCTAGCTAGGGTGTGCGG 59.893 66.667 22.10 0.00 0.00 5.69
509 510 2.722201 GCTAGCTAGGGTGTGCGGT 61.722 63.158 22.10 0.00 0.00 5.68
510 511 1.389609 GCTAGCTAGGGTGTGCGGTA 61.390 60.000 22.10 0.00 0.00 4.02
511 512 0.384669 CTAGCTAGGGTGTGCGGTAC 59.615 60.000 13.32 0.00 0.00 3.34
512 513 0.033796 TAGCTAGGGTGTGCGGTACT 60.034 55.000 0.00 0.00 0.00 2.73
513 514 1.141234 GCTAGGGTGTGCGGTACTC 59.859 63.158 0.00 0.00 0.00 2.59
514 515 1.814527 CTAGGGTGTGCGGTACTCC 59.185 63.158 8.57 8.57 41.25 3.85
515 516 0.968901 CTAGGGTGTGCGGTACTCCA 60.969 60.000 17.08 0.00 43.26 3.86
516 517 1.252904 TAGGGTGTGCGGTACTCCAC 61.253 60.000 17.08 8.18 43.26 4.02
517 518 2.580601 GGGTGTGCGGTACTCCACT 61.581 63.158 17.08 0.00 43.26 4.00
518 519 1.374252 GGTGTGCGGTACTCCACTG 60.374 63.158 11.67 0.00 41.54 3.66
523 524 4.779819 CGGTACTCCACTGCGTAC 57.220 61.111 0.00 0.00 36.21 3.67
524 525 2.177950 CGGTACTCCACTGCGTACT 58.822 57.895 0.00 0.00 36.94 2.73
536 537 3.188786 CGTACTCAAGCTGCCGGC 61.189 66.667 22.73 22.73 42.19 6.13
538 539 3.318384 TACTCAAGCTGCCGGCCA 61.318 61.111 26.77 11.42 43.05 5.36
543 544 3.406200 AAGCTGCCGGCCATCTCT 61.406 61.111 26.77 10.57 43.05 3.10
546 547 2.586245 CTGCCGGCCATCTCTTCA 59.414 61.111 26.77 0.00 0.00 3.02
551 552 0.811281 CCGGCCATCTCTTCAAAACC 59.189 55.000 2.24 0.00 0.00 3.27
554 555 2.939103 CGGCCATCTCTTCAAAACCTAG 59.061 50.000 2.24 0.00 0.00 3.02
555 556 2.685388 GGCCATCTCTTCAAAACCTAGC 59.315 50.000 0.00 0.00 0.00 3.42
556 557 3.347216 GCCATCTCTTCAAAACCTAGCA 58.653 45.455 0.00 0.00 0.00 3.49
557 558 3.376546 GCCATCTCTTCAAAACCTAGCAG 59.623 47.826 0.00 0.00 0.00 4.24
559 560 4.323792 CCATCTCTTCAAAACCTAGCAGGA 60.324 45.833 8.91 0.00 37.67 3.86
562 900 5.978814 TCTCTTCAAAACCTAGCAGGATAC 58.021 41.667 8.91 0.00 37.67 2.24
564 902 6.013725 TCTCTTCAAAACCTAGCAGGATACAA 60.014 38.462 8.91 0.00 37.67 2.41
567 905 2.604046 AACCTAGCAGGATACAAGCG 57.396 50.000 8.91 0.00 43.66 4.68
570 908 2.236395 ACCTAGCAGGATACAAGCGTTT 59.764 45.455 8.91 0.00 43.66 3.60
578 916 5.502544 GCAGGATACAAGCGTTTAATCTGAC 60.503 44.000 6.51 0.00 41.41 3.51
579 917 5.006746 CAGGATACAAGCGTTTAATCTGACC 59.993 44.000 6.51 0.00 41.41 4.02
580 918 4.873827 GGATACAAGCGTTTAATCTGACCA 59.126 41.667 6.51 0.00 0.00 4.02
581 919 5.353123 GGATACAAGCGTTTAATCTGACCAA 59.647 40.000 6.51 0.00 0.00 3.67
583 921 5.705609 ACAAGCGTTTAATCTGACCAATT 57.294 34.783 0.00 0.00 0.00 2.32
584 922 5.460646 ACAAGCGTTTAATCTGACCAATTG 58.539 37.500 0.00 0.00 0.00 2.32
586 924 5.046910 AGCGTTTAATCTGACCAATTGTG 57.953 39.130 4.43 0.00 0.00 3.33
588 926 5.009610 AGCGTTTAATCTGACCAATTGTGTT 59.990 36.000 4.43 0.00 0.00 3.32
589 927 5.116983 GCGTTTAATCTGACCAATTGTGTTG 59.883 40.000 4.43 0.92 0.00 3.33
590 928 6.434596 CGTTTAATCTGACCAATTGTGTTGA 58.565 36.000 4.43 5.68 0.00 3.18
593 931 9.092876 GTTTAATCTGACCAATTGTGTTGAAAA 57.907 29.630 4.43 2.46 0.00 2.29
594 932 9.829507 TTTAATCTGACCAATTGTGTTGAAAAT 57.170 25.926 4.43 1.10 0.00 1.82
596 934 8.816640 AATCTGACCAATTGTGTTGAAAATAC 57.183 30.769 4.43 0.00 38.54 1.89
599 937 6.202937 TGACCAATTGTGTTGAAAATACGAC 58.797 36.000 4.43 0.00 41.24 4.34
600 938 6.038825 TGACCAATTGTGTTGAAAATACGACT 59.961 34.615 4.43 0.00 41.24 4.18
602 940 7.357303 ACCAATTGTGTTGAAAATACGACTAC 58.643 34.615 4.43 0.00 41.24 2.73
603 941 7.227910 ACCAATTGTGTTGAAAATACGACTACT 59.772 33.333 4.43 0.00 41.24 2.57
695 1354 1.543065 GCACCATGCATGTTTCCCCA 61.543 55.000 24.58 0.00 44.26 4.96
706 1365 1.202722 TGTTTCCCCAACGAACCTCTC 60.203 52.381 0.00 0.00 38.36 3.20
723 1382 6.015027 ACCTCTCGTATATCAAGTATGCAC 57.985 41.667 0.00 0.00 0.00 4.57
750 1409 7.283329 ACTTGGCCCATAAAATAAACAACAAA 58.717 30.769 0.00 0.00 0.00 2.83
753 1412 8.697507 TGGCCCATAAAATAAACAACAAATTT 57.302 26.923 0.00 0.00 0.00 1.82
755 1414 8.787852 GGCCCATAAAATAAACAACAAATTTGA 58.212 29.630 24.64 1.13 0.00 2.69
762 1421 9.928236 AAAATAAACAACAAATTTGATCCAACG 57.072 25.926 24.64 3.40 0.00 4.10
763 1422 8.879342 AATAAACAACAAATTTGATCCAACGA 57.121 26.923 24.64 3.48 0.00 3.85
764 1423 9.487790 AATAAACAACAAATTTGATCCAACGAT 57.512 25.926 24.64 5.51 0.00 3.73
765 1424 7.784633 AAACAACAAATTTGATCCAACGATT 57.215 28.000 24.64 2.29 0.00 3.34
766 1425 8.879342 AAACAACAAATTTGATCCAACGATTA 57.121 26.923 24.64 0.00 0.00 1.75
767 1426 7.867445 ACAACAAATTTGATCCAACGATTAC 57.133 32.000 24.64 0.00 0.00 1.89
788 1477 4.843728 ACACCACGAACCATCTTATTCAT 58.156 39.130 0.00 0.00 0.00 2.57
790 1479 3.627577 ACCACGAACCATCTTATTCATGC 59.372 43.478 0.00 0.00 0.00 4.06
793 1617 5.209977 CACGAACCATCTTATTCATGCATG 58.790 41.667 21.07 21.07 0.00 4.06
798 1622 4.037565 ACCATCTTATTCATGCATGCAGTG 59.962 41.667 26.69 21.78 0.00 3.66
821 1648 2.370281 TGCAGCTCAGCAAGTACTAC 57.630 50.000 0.00 0.00 42.46 2.73
822 1649 1.066858 TGCAGCTCAGCAAGTACTACC 60.067 52.381 0.00 0.00 42.46 3.18
826 1653 3.697045 CAGCTCAGCAAGTACTACCTAGT 59.303 47.826 0.00 0.00 40.24 2.57
857 1691 8.648097 CACACTGTCACACAAGTACTATAAATC 58.352 37.037 0.00 0.00 0.00 2.17
861 1695 7.611770 TGTCACACAAGTACTATAAATCTGCT 58.388 34.615 0.00 0.00 0.00 4.24
868 1702 8.852135 ACAAGTACTATAAATCTGCTACCTCTC 58.148 37.037 0.00 0.00 0.00 3.20
881 1715 2.447244 ACCTCTCGCTTCTTGTCTTG 57.553 50.000 0.00 0.00 0.00 3.02
888 1722 0.944386 GCTTCTTGTCTTGGCAACGA 59.056 50.000 0.00 0.00 42.51 3.85
891 1725 3.188460 GCTTCTTGTCTTGGCAACGAATA 59.812 43.478 0.00 0.00 42.51 1.75
892 1726 4.142600 GCTTCTTGTCTTGGCAACGAATAT 60.143 41.667 0.00 0.00 42.51 1.28
893 1727 5.064707 GCTTCTTGTCTTGGCAACGAATATA 59.935 40.000 0.00 0.00 42.51 0.86
905 1739 6.127703 TGGCAACGAATATATCCTAGCTACTC 60.128 42.308 0.00 0.00 42.51 2.59
926 1763 2.808202 CGATCTTGTCCCAGCCAATAGG 60.808 54.545 0.00 0.00 38.23 2.57
949 1787 2.006056 GCTGCTTCTGTCTGCCTAGTG 61.006 57.143 0.00 0.00 0.00 2.74
950 1788 1.547820 CTGCTTCTGTCTGCCTAGTGA 59.452 52.381 0.00 0.00 0.00 3.41
968 1814 7.197703 CCTAGTGAACTTTTCTAGCTAGCTAC 58.802 42.308 20.67 9.44 31.96 3.58
991 1837 0.605589 GGAAAAGACCACCTCACCGG 60.606 60.000 0.00 0.00 39.35 5.28
993 1839 0.108019 AAAAGACCACCTCACCGGTC 59.892 55.000 2.59 0.18 44.93 4.79
996 1842 3.239253 ACCACCTCACCGGTCACC 61.239 66.667 2.59 0.00 44.93 4.02
1179 2025 1.484653 TGCAGGTACATCGGCTACAAT 59.515 47.619 0.00 0.00 0.00 2.71
1200 2046 2.933287 AACATGGACGCCTCCCCA 60.933 61.111 0.00 0.00 35.34 4.96
1217 2063 0.984230 CCACTCAAAGGTCAGCCCTA 59.016 55.000 0.00 0.00 45.47 3.53
1218 2064 1.351017 CCACTCAAAGGTCAGCCCTAA 59.649 52.381 0.00 0.00 45.47 2.69
1219 2065 2.427506 CACTCAAAGGTCAGCCCTAAC 58.572 52.381 0.00 0.00 45.47 2.34
1234 2086 1.702957 CCTAACAACCCCAACCTCTGA 59.297 52.381 0.00 0.00 0.00 3.27
1248 2101 7.168905 CCCAACCTCTGAATTCTTTAACTACT 58.831 38.462 7.05 0.00 0.00 2.57
1299 2174 6.785488 TTCTGGCATCGATGAAACATATAC 57.215 37.500 29.20 7.42 0.00 1.47
1377 2257 2.669569 GCGGCTGAAGAAGGTGCA 60.670 61.111 0.00 0.00 0.00 4.57
1405 2285 4.426313 GGGCAGGGCGGCTACTTT 62.426 66.667 9.56 0.00 40.90 2.66
1875 2784 0.461548 CCGATGTGCTCAAGGCTCTA 59.538 55.000 0.00 0.00 42.39 2.43
1886 2795 7.069455 TGTGCTCAAGGCTCTATGTATAACTAA 59.931 37.037 0.00 0.00 42.39 2.24
1887 2796 7.382759 GTGCTCAAGGCTCTATGTATAACTAAC 59.617 40.741 0.00 0.00 42.39 2.34
1907 2843 4.416505 ACACTCCTACTTCGTAAGTTCG 57.583 45.455 5.74 0.00 42.81 3.95
1929 2865 5.061311 TCGTTCAAGTCGGATTTATCGTTTC 59.939 40.000 0.00 0.00 0.00 2.78
1939 2909 6.257849 TCGGATTTATCGTTTCTCCAAGATTG 59.742 38.462 0.00 0.00 0.00 2.67
1945 2915 9.887406 TTTATCGTTTCTCCAAGATTGTTTTAC 57.113 29.630 0.00 0.00 0.00 2.01
1947 2917 7.323049 TCGTTTCTCCAAGATTGTTTTACAA 57.677 32.000 0.00 0.00 42.95 2.41
2028 3004 7.008021 AGGAACTGATTACAAATGCCAAAAT 57.992 32.000 0.00 0.00 37.18 1.82
2031 3007 9.213799 GGAACTGATTACAAATGCCAAAATTTA 57.786 29.630 0.00 0.00 0.00 1.40
2060 3036 3.759581 ACTGAAATGTCACAGGCAGATT 58.240 40.909 10.36 0.00 38.30 2.40
2078 3054 1.629043 TTACGCTTGAGACCAGGAGT 58.371 50.000 0.00 0.00 36.49 3.85
2179 3158 0.543749 GCAGAGTAGAGGCCAACCAT 59.456 55.000 5.01 0.00 39.06 3.55
2230 3209 0.693049 AACCGCATGGAGAGAAACCT 59.307 50.000 0.00 0.00 39.21 3.50
2239 3218 1.202818 GGAGAGAAACCTGGCACTGTT 60.203 52.381 0.00 0.00 0.00 3.16
2275 3254 4.223032 GGACTAATGTTGGAGAGGAGAACA 59.777 45.833 0.00 0.00 34.25 3.18
2363 3342 2.176889 GGTACCTGACAAGAGCCACTA 58.823 52.381 4.06 0.00 0.00 2.74
2427 3406 0.244994 CTAGAGAGCAACGCACCACT 59.755 55.000 0.00 0.00 0.00 4.00
2460 3439 2.332514 CAAACACCACAGCCGCAG 59.667 61.111 0.00 0.00 0.00 5.18
2465 3444 2.919856 ACCACAGCCGCAGTCTCT 60.920 61.111 0.00 0.00 0.00 3.10
2515 3494 4.626081 ACAAGCCGCTGGAACGCT 62.626 61.111 0.39 0.00 0.00 5.07
2535 3514 3.361174 CGTTGTCCGGCCCAAAAT 58.639 55.556 7.81 0.00 0.00 1.82
2620 3599 2.524394 ACAGGAGTGGACTGGCGT 60.524 61.111 0.00 0.00 40.23 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.605232 CGGCACCGTTAGAAAAACCTT 59.395 47.619 0.00 0.00 34.35 3.50
2 3 1.232119 CGGCACCGTTAGAAAAACCT 58.768 50.000 0.00 0.00 34.35 3.50
4 5 0.386352 GCCGGCACCGTTAGAAAAAC 60.386 55.000 24.80 0.00 37.81 2.43
6 7 0.606944 ATGCCGGCACCGTTAGAAAA 60.607 50.000 35.50 3.63 37.81 2.29
7 8 1.003112 ATGCCGGCACCGTTAGAAA 60.003 52.632 35.50 4.30 37.81 2.52
8 9 1.743623 CATGCCGGCACCGTTAGAA 60.744 57.895 35.50 5.26 37.81 2.10
9 10 1.605971 TACATGCCGGCACCGTTAGA 61.606 55.000 35.50 14.37 37.81 2.10
10 11 1.151777 CTACATGCCGGCACCGTTAG 61.152 60.000 35.50 23.67 37.81 2.34
11 12 1.153529 CTACATGCCGGCACCGTTA 60.154 57.895 35.50 18.65 37.81 3.18
12 13 2.435938 CTACATGCCGGCACCGTT 60.436 61.111 35.50 18.51 37.81 4.44
13 14 3.702048 ACTACATGCCGGCACCGT 61.702 61.111 35.50 32.07 37.81 4.83
14 15 3.195002 CACTACATGCCGGCACCG 61.195 66.667 35.50 28.04 39.44 4.94
15 16 2.824041 CCACTACATGCCGGCACC 60.824 66.667 35.50 0.00 0.00 5.01
16 17 2.046314 ACCACTACATGCCGGCAC 60.046 61.111 35.50 0.17 0.00 5.01
17 18 2.046411 CACCACTACATGCCGGCA 60.046 61.111 34.80 34.80 0.00 5.69
18 19 0.958382 TTTCACCACTACATGCCGGC 60.958 55.000 22.73 22.73 0.00 6.13
19 20 0.802494 GTTTCACCACTACATGCCGG 59.198 55.000 0.00 0.00 0.00 6.13
20 21 1.518325 TGTTTCACCACTACATGCCG 58.482 50.000 0.00 0.00 0.00 5.69
21 22 2.423538 GGATGTTTCACCACTACATGCC 59.576 50.000 0.00 0.00 35.41 4.40
22 23 3.081061 TGGATGTTTCACCACTACATGC 58.919 45.455 0.00 0.00 39.95 4.06
23 24 3.127548 GCTGGATGTTTCACCACTACATG 59.872 47.826 0.00 0.00 32.94 3.21
24 25 3.347216 GCTGGATGTTTCACCACTACAT 58.653 45.455 0.00 0.00 35.33 2.29
25 26 2.778299 GCTGGATGTTTCACCACTACA 58.222 47.619 0.00 0.00 32.44 2.74
26 27 1.732259 CGCTGGATGTTTCACCACTAC 59.268 52.381 0.00 0.00 32.44 2.73
27 28 1.346395 ACGCTGGATGTTTCACCACTA 59.654 47.619 0.00 0.00 32.44 2.74
28 29 0.108585 ACGCTGGATGTTTCACCACT 59.891 50.000 0.00 0.00 32.44 4.00
29 30 0.951558 AACGCTGGATGTTTCACCAC 59.048 50.000 0.00 0.00 32.44 4.16
30 31 0.950836 CAACGCTGGATGTTTCACCA 59.049 50.000 0.00 0.00 34.81 4.17
31 32 0.240945 CCAACGCTGGATGTTTCACC 59.759 55.000 0.00 0.00 46.92 4.02
32 33 3.773117 CCAACGCTGGATGTTTCAC 57.227 52.632 0.00 0.00 46.92 3.18
41 42 1.531149 CAAGTACAACTCCAACGCTGG 59.469 52.381 0.00 0.00 45.08 4.85
42 43 2.476619 CTCAAGTACAACTCCAACGCTG 59.523 50.000 0.00 0.00 0.00 5.18
43 44 2.364324 TCTCAAGTACAACTCCAACGCT 59.636 45.455 0.00 0.00 0.00 5.07
44 45 2.750948 TCTCAAGTACAACTCCAACGC 58.249 47.619 0.00 0.00 0.00 4.84
45 46 4.090066 CGAATCTCAAGTACAACTCCAACG 59.910 45.833 0.00 0.00 0.00 4.10
46 47 4.989168 ACGAATCTCAAGTACAACTCCAAC 59.011 41.667 0.00 0.00 0.00 3.77
47 48 4.988540 CACGAATCTCAAGTACAACTCCAA 59.011 41.667 0.00 0.00 0.00 3.53
48 49 4.038763 ACACGAATCTCAAGTACAACTCCA 59.961 41.667 0.00 0.00 0.00 3.86
49 50 4.557205 ACACGAATCTCAAGTACAACTCC 58.443 43.478 0.00 0.00 0.00 3.85
50 51 7.027760 TCATACACGAATCTCAAGTACAACTC 58.972 38.462 0.00 0.00 0.00 3.01
51 52 6.920817 TCATACACGAATCTCAAGTACAACT 58.079 36.000 0.00 0.00 0.00 3.16
52 53 7.027760 TCTCATACACGAATCTCAAGTACAAC 58.972 38.462 0.00 0.00 0.00 3.32
53 54 7.153217 TCTCATACACGAATCTCAAGTACAA 57.847 36.000 0.00 0.00 0.00 2.41
54 55 6.753107 TCTCATACACGAATCTCAAGTACA 57.247 37.500 0.00 0.00 0.00 2.90
55 56 7.541091 TGTTTCTCATACACGAATCTCAAGTAC 59.459 37.037 0.00 0.00 0.00 2.73
56 57 7.599171 TGTTTCTCATACACGAATCTCAAGTA 58.401 34.615 0.00 0.00 0.00 2.24
57 58 6.455647 TGTTTCTCATACACGAATCTCAAGT 58.544 36.000 0.00 0.00 0.00 3.16
58 59 6.951256 TGTTTCTCATACACGAATCTCAAG 57.049 37.500 0.00 0.00 0.00 3.02
59 60 7.722795 TTTGTTTCTCATACACGAATCTCAA 57.277 32.000 0.00 0.00 0.00 3.02
60 61 7.722795 TTTTGTTTCTCATACACGAATCTCA 57.277 32.000 0.00 0.00 0.00 3.27
64 65 9.341899 GCTTTATTTTGTTTCTCATACACGAAT 57.658 29.630 0.00 0.00 0.00 3.34
65 66 7.532546 CGCTTTATTTTGTTTCTCATACACGAA 59.467 33.333 0.00 0.00 0.00 3.85
66 67 7.012943 CGCTTTATTTTGTTTCTCATACACGA 58.987 34.615 0.00 0.00 0.00 4.35
67 68 6.236941 GCGCTTTATTTTGTTTCTCATACACG 60.237 38.462 0.00 0.00 0.00 4.49
68 69 6.580791 TGCGCTTTATTTTGTTTCTCATACAC 59.419 34.615 9.73 0.00 0.00 2.90
69 70 6.673106 TGCGCTTTATTTTGTTTCTCATACA 58.327 32.000 9.73 0.00 0.00 2.29
70 71 7.326063 ACTTGCGCTTTATTTTGTTTCTCATAC 59.674 33.333 9.73 0.00 0.00 2.39
71 72 7.367285 ACTTGCGCTTTATTTTGTTTCTCATA 58.633 30.769 9.73 0.00 0.00 2.15
72 73 6.215845 ACTTGCGCTTTATTTTGTTTCTCAT 58.784 32.000 9.73 0.00 0.00 2.90
73 74 5.587289 ACTTGCGCTTTATTTTGTTTCTCA 58.413 33.333 9.73 0.00 0.00 3.27
74 75 7.617533 TTACTTGCGCTTTATTTTGTTTCTC 57.382 32.000 9.73 0.00 0.00 2.87
75 76 8.587952 AATTACTTGCGCTTTATTTTGTTTCT 57.412 26.923 9.73 0.00 0.00 2.52
78 79 9.855021 AGATAATTACTTGCGCTTTATTTTGTT 57.145 25.926 9.73 0.00 0.00 2.83
79 80 9.855021 AAGATAATTACTTGCGCTTTATTTTGT 57.145 25.926 9.73 0.00 0.00 2.83
81 82 9.301153 CCAAGATAATTACTTGCGCTTTATTTT 57.699 29.630 9.73 0.00 42.03 1.82
82 83 7.920682 CCCAAGATAATTACTTGCGCTTTATTT 59.079 33.333 9.73 2.83 42.03 1.40
83 84 7.425606 CCCAAGATAATTACTTGCGCTTTATT 58.574 34.615 9.73 4.14 42.03 1.40
84 85 6.016276 CCCCAAGATAATTACTTGCGCTTTAT 60.016 38.462 9.73 2.75 42.03 1.40
85 86 5.298276 CCCCAAGATAATTACTTGCGCTTTA 59.702 40.000 9.73 0.00 42.03 1.85
86 87 4.097892 CCCCAAGATAATTACTTGCGCTTT 59.902 41.667 9.73 0.00 42.03 3.51
87 88 3.632145 CCCCAAGATAATTACTTGCGCTT 59.368 43.478 9.73 0.00 42.03 4.68
88 89 3.118038 TCCCCAAGATAATTACTTGCGCT 60.118 43.478 9.73 0.00 42.03 5.92
89 90 3.211045 TCCCCAAGATAATTACTTGCGC 58.789 45.455 0.00 0.00 42.03 6.09
90 91 4.703897 TCTCCCCAAGATAATTACTTGCG 58.296 43.478 16.20 11.07 42.03 4.85
91 92 5.930135 TCTCTCCCCAAGATAATTACTTGC 58.070 41.667 16.20 0.00 42.03 4.01
92 93 7.366847 TCTCTCTCCCCAAGATAATTACTTG 57.633 40.000 15.31 15.31 42.72 3.16
93 94 7.039363 CGATCTCTCTCCCCAAGATAATTACTT 60.039 40.741 0.00 0.00 32.19 2.24
94 95 6.435904 CGATCTCTCTCCCCAAGATAATTACT 59.564 42.308 0.00 0.00 32.19 2.24
95 96 6.434652 TCGATCTCTCTCCCCAAGATAATTAC 59.565 42.308 0.00 0.00 32.19 1.89
96 97 6.552932 TCGATCTCTCTCCCCAAGATAATTA 58.447 40.000 0.00 0.00 32.19 1.40
97 98 5.398236 TCGATCTCTCTCCCCAAGATAATT 58.602 41.667 0.00 0.00 32.19 1.40
98 99 5.004361 TCGATCTCTCTCCCCAAGATAAT 57.996 43.478 0.00 0.00 32.19 1.28
99 100 4.455070 TCGATCTCTCTCCCCAAGATAA 57.545 45.455 0.00 0.00 32.19 1.75
100 101 4.145807 GTTCGATCTCTCTCCCCAAGATA 58.854 47.826 0.00 0.00 32.19 1.98
101 102 2.962421 GTTCGATCTCTCTCCCCAAGAT 59.038 50.000 0.00 0.00 32.19 2.40
102 103 2.379972 GTTCGATCTCTCTCCCCAAGA 58.620 52.381 0.00 0.00 0.00 3.02
103 104 1.410882 GGTTCGATCTCTCTCCCCAAG 59.589 57.143 0.00 0.00 0.00 3.61
104 105 1.273041 TGGTTCGATCTCTCTCCCCAA 60.273 52.381 0.00 0.00 0.00 4.12
105 106 0.335019 TGGTTCGATCTCTCTCCCCA 59.665 55.000 0.00 0.00 0.00 4.96
106 107 1.616374 GATGGTTCGATCTCTCTCCCC 59.384 57.143 0.00 0.00 0.00 4.81
107 108 2.556622 GAGATGGTTCGATCTCTCTCCC 59.443 54.545 14.49 0.00 43.52 4.30
108 109 3.915437 GAGATGGTTCGATCTCTCTCC 57.085 52.381 14.49 0.00 43.52 3.71
113 114 2.879002 TGCAGAGATGGTTCGATCTC 57.121 50.000 14.10 14.10 46.11 2.75
114 115 2.806019 GCATGCAGAGATGGTTCGATCT 60.806 50.000 14.21 0.00 35.27 2.75
115 116 1.530293 GCATGCAGAGATGGTTCGATC 59.470 52.381 14.21 0.00 0.00 3.69
116 117 1.134310 TGCATGCAGAGATGGTTCGAT 60.134 47.619 18.46 0.00 0.00 3.59
117 118 0.249955 TGCATGCAGAGATGGTTCGA 59.750 50.000 18.46 0.00 0.00 3.71
118 119 1.089112 TTGCATGCAGAGATGGTTCG 58.911 50.000 21.50 0.00 0.00 3.95
119 120 1.814394 TGTTGCATGCAGAGATGGTTC 59.186 47.619 21.50 5.03 0.00 3.62
120 121 1.913778 TGTTGCATGCAGAGATGGTT 58.086 45.000 21.50 0.00 0.00 3.67
121 122 1.913778 TTGTTGCATGCAGAGATGGT 58.086 45.000 21.50 0.00 0.00 3.55
122 123 2.223735 GGATTGTTGCATGCAGAGATGG 60.224 50.000 21.50 0.00 0.00 3.51
123 124 2.540973 CGGATTGTTGCATGCAGAGATG 60.541 50.000 21.50 5.34 0.00 2.90
124 125 1.674441 CGGATTGTTGCATGCAGAGAT 59.326 47.619 21.50 15.03 0.00 2.75
125 126 1.089112 CGGATTGTTGCATGCAGAGA 58.911 50.000 21.50 10.75 0.00 3.10
126 127 0.806868 ACGGATTGTTGCATGCAGAG 59.193 50.000 21.50 10.37 0.00 3.35
127 128 0.804364 GACGGATTGTTGCATGCAGA 59.196 50.000 21.50 11.50 0.00 4.26
128 129 0.179156 GGACGGATTGTTGCATGCAG 60.179 55.000 21.50 9.89 0.00 4.41
129 130 0.608856 AGGACGGATTGTTGCATGCA 60.609 50.000 18.46 18.46 0.00 3.96
130 131 0.527565 AAGGACGGATTGTTGCATGC 59.472 50.000 11.82 11.82 0.00 4.06
131 132 1.733389 GCAAGGACGGATTGTTGCATG 60.733 52.381 1.15 0.00 43.86 4.06
132 133 0.527565 GCAAGGACGGATTGTTGCAT 59.472 50.000 1.15 0.00 43.86 3.96
133 134 1.956043 GCAAGGACGGATTGTTGCA 59.044 52.632 1.15 0.00 43.86 4.08
134 135 0.527565 ATGCAAGGACGGATTGTTGC 59.472 50.000 0.00 0.00 44.53 4.17
135 136 1.733389 GCATGCAAGGACGGATTGTTG 60.733 52.381 14.21 0.00 0.00 3.33
136 137 0.527565 GCATGCAAGGACGGATTGTT 59.472 50.000 14.21 0.00 0.00 2.83
137 138 1.647545 CGCATGCAAGGACGGATTGT 61.648 55.000 19.57 0.00 0.00 2.71
138 139 1.063006 CGCATGCAAGGACGGATTG 59.937 57.895 19.57 0.00 0.00 2.67
139 140 0.464373 ATCGCATGCAAGGACGGATT 60.464 50.000 19.57 0.00 0.00 3.01
140 141 0.882042 GATCGCATGCAAGGACGGAT 60.882 55.000 19.57 10.05 0.00 4.18
141 142 1.521457 GATCGCATGCAAGGACGGA 60.521 57.895 19.57 5.00 0.00 4.69
142 143 1.815003 TGATCGCATGCAAGGACGG 60.815 57.895 19.57 0.00 0.00 4.79
143 144 1.349627 GTGATCGCATGCAAGGACG 59.650 57.895 19.57 0.00 0.00 4.79
144 145 0.097674 GTGTGATCGCATGCAAGGAC 59.902 55.000 19.57 9.09 0.00 3.85
145 146 0.036105 AGTGTGATCGCATGCAAGGA 60.036 50.000 19.57 7.41 0.00 3.36
146 147 0.376152 GAGTGTGATCGCATGCAAGG 59.624 55.000 19.57 0.99 0.00 3.61
147 148 1.326852 GAGAGTGTGATCGCATGCAAG 59.673 52.381 19.57 1.83 0.00 4.01
148 149 1.066645 AGAGAGTGTGATCGCATGCAA 60.067 47.619 19.57 0.00 0.00 4.08
149 150 0.533951 AGAGAGTGTGATCGCATGCA 59.466 50.000 19.57 5.34 0.00 3.96
150 151 1.649664 AAGAGAGTGTGATCGCATGC 58.350 50.000 12.94 7.91 0.00 4.06
151 152 3.931468 AGAAAAGAGAGTGTGATCGCATG 59.069 43.478 12.94 0.00 0.00 4.06
152 153 4.199432 AGAAAAGAGAGTGTGATCGCAT 57.801 40.909 12.94 1.57 0.00 4.73
153 154 3.667497 AGAAAAGAGAGTGTGATCGCA 57.333 42.857 4.45 4.45 0.00 5.10
154 155 5.061560 CAGTAAGAAAAGAGAGTGTGATCGC 59.938 44.000 0.00 0.00 0.00 4.58
155 156 6.306837 GTCAGTAAGAAAAGAGAGTGTGATCG 59.693 42.308 0.00 0.00 0.00 3.69
156 157 7.148641 TGTCAGTAAGAAAAGAGAGTGTGATC 58.851 38.462 0.00 0.00 0.00 2.92
157 158 7.055667 TGTCAGTAAGAAAAGAGAGTGTGAT 57.944 36.000 0.00 0.00 0.00 3.06
158 159 6.465439 TGTCAGTAAGAAAAGAGAGTGTGA 57.535 37.500 0.00 0.00 0.00 3.58
159 160 7.402640 GTTTGTCAGTAAGAAAAGAGAGTGTG 58.597 38.462 0.00 0.00 0.00 3.82
160 161 6.255887 CGTTTGTCAGTAAGAAAAGAGAGTGT 59.744 38.462 0.00 0.00 0.00 3.55
161 162 6.255887 ACGTTTGTCAGTAAGAAAAGAGAGTG 59.744 38.462 0.00 0.00 0.00 3.51
162 163 6.338937 ACGTTTGTCAGTAAGAAAAGAGAGT 58.661 36.000 0.00 0.00 0.00 3.24
163 164 6.830114 ACGTTTGTCAGTAAGAAAAGAGAG 57.170 37.500 0.00 0.00 0.00 3.20
164 165 6.823678 GACGTTTGTCAGTAAGAAAAGAGA 57.176 37.500 0.00 0.00 44.82 3.10
170 171 7.521099 CAGGTACTAGACGTTTGTCAGTAAGAA 60.521 40.741 0.00 0.00 42.83 2.52
171 172 6.072838 CAGGTACTAGACGTTTGTCAGTAAGA 60.073 42.308 0.00 0.00 42.83 2.10
172 173 6.072838 TCAGGTACTAGACGTTTGTCAGTAAG 60.073 42.308 0.00 0.00 42.83 2.34
173 174 5.764686 TCAGGTACTAGACGTTTGTCAGTAA 59.235 40.000 0.00 0.00 42.83 2.24
174 175 5.308014 TCAGGTACTAGACGTTTGTCAGTA 58.692 41.667 0.00 1.98 42.83 2.74
175 176 4.139786 TCAGGTACTAGACGTTTGTCAGT 58.860 43.478 0.00 2.81 42.83 3.41
176 177 4.761235 TCAGGTACTAGACGTTTGTCAG 57.239 45.455 0.00 0.00 42.83 3.51
177 178 5.518848 TTTCAGGTACTAGACGTTTGTCA 57.481 39.130 0.00 0.00 42.83 3.58
178 179 8.699283 ATAATTTCAGGTACTAGACGTTTGTC 57.301 34.615 0.00 0.00 41.13 3.18
179 180 8.308931 TGATAATTTCAGGTACTAGACGTTTGT 58.691 33.333 0.00 0.00 36.02 2.83
180 181 8.697846 TGATAATTTCAGGTACTAGACGTTTG 57.302 34.615 0.00 0.00 36.02 2.93
181 182 8.928270 CTGATAATTTCAGGTACTAGACGTTT 57.072 34.615 0.00 0.00 46.89 3.60
195 196 9.661563 ACGTAGGAATACAAACTGATAATTTCA 57.338 29.630 0.00 0.00 0.00 2.69
200 201 9.037737 GCAATACGTAGGAATACAAACTGATAA 57.962 33.333 0.08 0.00 0.00 1.75
201 202 8.418662 AGCAATACGTAGGAATACAAACTGATA 58.581 33.333 0.08 0.00 0.00 2.15
202 203 7.272978 AGCAATACGTAGGAATACAAACTGAT 58.727 34.615 0.08 0.00 0.00 2.90
203 204 6.636705 AGCAATACGTAGGAATACAAACTGA 58.363 36.000 0.08 0.00 0.00 3.41
204 205 6.903883 AGCAATACGTAGGAATACAAACTG 57.096 37.500 0.08 0.00 0.00 3.16
205 206 7.916914 AAAGCAATACGTAGGAATACAAACT 57.083 32.000 0.08 0.00 0.00 2.66
213 214 9.968870 ACAAATTTTTAAAGCAATACGTAGGAA 57.031 25.926 0.08 0.00 0.00 3.36
214 215 9.968870 AACAAATTTTTAAAGCAATACGTAGGA 57.031 25.926 0.08 0.00 0.00 2.94
235 236 9.369672 ACCTGGGTAATAAATTCTGTAAACAAA 57.630 29.630 0.00 0.00 0.00 2.83
236 237 8.943594 ACCTGGGTAATAAATTCTGTAAACAA 57.056 30.769 0.00 0.00 0.00 2.83
237 238 7.612633 GGACCTGGGTAATAAATTCTGTAAACA 59.387 37.037 0.00 0.00 0.00 2.83
238 239 7.612633 TGGACCTGGGTAATAAATTCTGTAAAC 59.387 37.037 0.00 0.00 0.00 2.01
239 240 7.700846 TGGACCTGGGTAATAAATTCTGTAAA 58.299 34.615 0.00 0.00 0.00 2.01
240 241 7.273457 TGGACCTGGGTAATAAATTCTGTAA 57.727 36.000 0.00 0.00 0.00 2.41
241 242 6.894735 TGGACCTGGGTAATAAATTCTGTA 57.105 37.500 0.00 0.00 0.00 2.74
242 243 5.789574 TGGACCTGGGTAATAAATTCTGT 57.210 39.130 0.00 0.00 0.00 3.41
243 244 6.039717 CACATGGACCTGGGTAATAAATTCTG 59.960 42.308 0.00 0.00 0.00 3.02
244 245 6.129179 CACATGGACCTGGGTAATAAATTCT 58.871 40.000 0.00 0.00 0.00 2.40
245 246 5.891551 ACACATGGACCTGGGTAATAAATTC 59.108 40.000 0.00 0.00 28.77 2.17
246 247 5.656416 CACACATGGACCTGGGTAATAAATT 59.344 40.000 0.00 0.00 29.71 1.82
247 248 5.044476 TCACACATGGACCTGGGTAATAAAT 60.044 40.000 0.00 0.00 29.71 1.40
248 249 4.289934 TCACACATGGACCTGGGTAATAAA 59.710 41.667 0.00 0.00 29.71 1.40
249 250 3.847184 TCACACATGGACCTGGGTAATAA 59.153 43.478 0.00 0.00 29.71 1.40
250 251 3.455849 TCACACATGGACCTGGGTAATA 58.544 45.455 0.00 0.00 29.71 0.98
251 252 2.274542 TCACACATGGACCTGGGTAAT 58.725 47.619 0.00 0.00 29.71 1.89
252 253 1.735926 TCACACATGGACCTGGGTAA 58.264 50.000 0.00 0.00 29.71 2.85
253 254 1.837439 GATCACACATGGACCTGGGTA 59.163 52.381 0.00 0.00 29.71 3.69
254 255 0.620556 GATCACACATGGACCTGGGT 59.379 55.000 0.00 0.00 31.32 4.51
255 256 0.620030 TGATCACACATGGACCTGGG 59.380 55.000 0.00 0.00 0.00 4.45
256 257 1.556451 TCTGATCACACATGGACCTGG 59.444 52.381 0.00 0.00 0.00 4.45
257 258 3.339253 TTCTGATCACACATGGACCTG 57.661 47.619 0.00 0.00 0.00 4.00
258 259 3.328931 AGTTTCTGATCACACATGGACCT 59.671 43.478 0.00 0.00 0.00 3.85
259 260 3.679389 AGTTTCTGATCACACATGGACC 58.321 45.455 0.00 0.00 0.00 4.46
260 261 3.686726 GGAGTTTCTGATCACACATGGAC 59.313 47.826 0.00 0.00 0.00 4.02
261 262 3.327464 TGGAGTTTCTGATCACACATGGA 59.673 43.478 0.00 0.00 0.00 3.41
262 263 3.678289 TGGAGTTTCTGATCACACATGG 58.322 45.455 0.00 0.00 0.00 3.66
263 264 4.698780 ACATGGAGTTTCTGATCACACATG 59.301 41.667 15.69 15.69 36.95 3.21
264 265 4.914983 ACATGGAGTTTCTGATCACACAT 58.085 39.130 0.00 0.00 0.00 3.21
265 266 4.318332 GACATGGAGTTTCTGATCACACA 58.682 43.478 0.00 0.00 0.00 3.72
266 267 3.686726 GGACATGGAGTTTCTGATCACAC 59.313 47.826 0.00 0.00 0.00 3.82
267 268 3.327464 TGGACATGGAGTTTCTGATCACA 59.673 43.478 0.00 0.00 0.00 3.58
268 269 3.942829 TGGACATGGAGTTTCTGATCAC 58.057 45.455 0.00 0.00 0.00 3.06
269 270 4.286808 TCTTGGACATGGAGTTTCTGATCA 59.713 41.667 0.00 0.00 0.00 2.92
270 271 4.836825 TCTTGGACATGGAGTTTCTGATC 58.163 43.478 0.00 0.00 0.00 2.92
271 272 4.916041 TCTTGGACATGGAGTTTCTGAT 57.084 40.909 0.00 0.00 0.00 2.90
272 273 4.705110 TTCTTGGACATGGAGTTTCTGA 57.295 40.909 0.00 0.00 0.00 3.27
273 274 5.709164 AGATTTCTTGGACATGGAGTTTCTG 59.291 40.000 0.00 0.00 0.00 3.02
274 275 5.885465 AGATTTCTTGGACATGGAGTTTCT 58.115 37.500 0.00 0.00 0.00 2.52
275 276 6.581171 AAGATTTCTTGGACATGGAGTTTC 57.419 37.500 0.00 0.00 34.38 2.78
289 290 4.326826 TGGCGATGAGTTCAAGATTTCTT 58.673 39.130 0.00 0.00 36.45 2.52
290 291 3.942829 TGGCGATGAGTTCAAGATTTCT 58.057 40.909 0.00 0.00 0.00 2.52
291 292 4.889832 ATGGCGATGAGTTCAAGATTTC 57.110 40.909 0.00 0.00 0.00 2.17
292 293 5.431765 AGTATGGCGATGAGTTCAAGATTT 58.568 37.500 0.00 0.00 0.00 2.17
293 294 5.028549 AGTATGGCGATGAGTTCAAGATT 57.971 39.130 0.00 0.00 0.00 2.40
294 295 4.679373 AGTATGGCGATGAGTTCAAGAT 57.321 40.909 0.00 0.00 0.00 2.40
295 296 4.471904 AAGTATGGCGATGAGTTCAAGA 57.528 40.909 0.00 0.00 0.00 3.02
296 297 5.812642 AGTTAAGTATGGCGATGAGTTCAAG 59.187 40.000 0.00 0.00 0.00 3.02
297 298 5.730550 AGTTAAGTATGGCGATGAGTTCAA 58.269 37.500 0.00 0.00 0.00 2.69
298 299 5.339008 AGTTAAGTATGGCGATGAGTTCA 57.661 39.130 0.00 0.00 0.00 3.18
299 300 6.074994 CGTAAGTTAAGTATGGCGATGAGTTC 60.075 42.308 0.00 0.00 0.00 3.01
300 301 5.747197 CGTAAGTTAAGTATGGCGATGAGTT 59.253 40.000 0.00 0.00 0.00 3.01
301 302 5.279384 CGTAAGTTAAGTATGGCGATGAGT 58.721 41.667 0.00 0.00 0.00 3.41
302 303 5.807730 CGTAAGTTAAGTATGGCGATGAG 57.192 43.478 0.00 0.00 0.00 2.90
329 330 7.787847 ATCGTACGGATTATCGGGGAACCTA 62.788 48.000 16.52 0.00 40.17 3.08
331 332 4.926668 ATCGTACGGATTATCGGGGAACC 61.927 52.174 16.52 0.00 39.64 3.62
332 333 1.608590 TCGTACGGATTATCGGGGAAC 59.391 52.381 16.52 0.00 0.00 3.62
333 334 1.979855 TCGTACGGATTATCGGGGAA 58.020 50.000 16.52 0.00 0.00 3.97
334 335 1.814394 CATCGTACGGATTATCGGGGA 59.186 52.381 16.52 0.00 31.28 4.81
335 336 1.734707 GCATCGTACGGATTATCGGGG 60.735 57.143 16.52 0.00 31.28 5.73
336 337 1.625616 GCATCGTACGGATTATCGGG 58.374 55.000 16.52 0.00 31.28 5.14
337 338 1.201647 AGGCATCGTACGGATTATCGG 59.798 52.381 16.52 0.00 31.28 4.18
338 339 2.631418 AGGCATCGTACGGATTATCG 57.369 50.000 16.52 0.00 31.28 2.92
339 340 3.909430 TCAAGGCATCGTACGGATTATC 58.091 45.455 16.52 1.06 31.28 1.75
340 341 4.056050 GTTCAAGGCATCGTACGGATTAT 58.944 43.478 16.52 0.00 31.28 1.28
341 342 3.450578 GTTCAAGGCATCGTACGGATTA 58.549 45.455 16.52 0.00 31.28 1.75
342 343 2.277084 GTTCAAGGCATCGTACGGATT 58.723 47.619 16.52 0.00 31.28 3.01
343 344 1.801395 CGTTCAAGGCATCGTACGGAT 60.801 52.381 16.52 4.92 35.09 4.18
344 345 0.457166 CGTTCAAGGCATCGTACGGA 60.457 55.000 16.52 2.44 0.00 4.69
345 346 1.418342 CCGTTCAAGGCATCGTACGG 61.418 60.000 16.52 0.00 41.92 4.02
346 347 0.734942 ACCGTTCAAGGCATCGTACG 60.735 55.000 9.53 9.53 33.69 3.67
347 348 1.922545 GTACCGTTCAAGGCATCGTAC 59.077 52.381 0.00 0.00 33.69 3.67
348 349 1.467883 CGTACCGTTCAAGGCATCGTA 60.468 52.381 0.00 0.00 33.69 3.43
349 350 0.734942 CGTACCGTTCAAGGCATCGT 60.735 55.000 0.00 0.00 33.69 3.73
350 351 0.734942 ACGTACCGTTCAAGGCATCG 60.735 55.000 0.00 0.00 36.35 3.84
351 352 2.282701 TACGTACCGTTCAAGGCATC 57.717 50.000 0.00 0.00 41.54 3.91
364 365 3.374058 AGAAACCATGCAGCATTACGTAC 59.626 43.478 4.69 1.51 0.00 3.67
394 395 8.935844 CCAACTTGAACGCATACATACATATAT 58.064 33.333 0.00 0.00 0.00 0.86
405 406 1.810151 GAAGGCCAACTTGAACGCATA 59.190 47.619 5.01 0.00 40.21 3.14
408 409 0.238553 GAGAAGGCCAACTTGAACGC 59.761 55.000 5.01 0.00 40.21 4.84
411 412 1.416401 ACGAGAGAAGGCCAACTTGAA 59.584 47.619 5.01 0.00 40.21 2.69
412 413 1.048601 ACGAGAGAAGGCCAACTTGA 58.951 50.000 5.01 0.00 40.21 3.02
413 414 1.801178 GAACGAGAGAAGGCCAACTTG 59.199 52.381 5.01 4.89 40.21 3.16
414 415 1.416401 TGAACGAGAGAAGGCCAACTT 59.584 47.619 5.01 0.00 43.65 2.66
415 416 1.048601 TGAACGAGAGAAGGCCAACT 58.951 50.000 5.01 2.83 0.00 3.16
416 417 2.003301 GATGAACGAGAGAAGGCCAAC 58.997 52.381 5.01 0.00 0.00 3.77
417 418 1.066143 GGATGAACGAGAGAAGGCCAA 60.066 52.381 5.01 0.00 0.00 4.52
418 419 0.537188 GGATGAACGAGAGAAGGCCA 59.463 55.000 5.01 0.00 0.00 5.36
419 420 0.537188 TGGATGAACGAGAGAAGGCC 59.463 55.000 0.00 0.00 0.00 5.19
430 431 4.160635 CCGGCGCGTTGGATGAAC 62.161 66.667 8.43 0.00 0.00 3.18
454 455 6.068473 TGATCTGAATATCAGCATGCAAAC 57.932 37.500 21.98 4.44 43.95 2.93
460 461 5.516059 ACCCATGATCTGAATATCAGCAT 57.484 39.130 0.00 0.00 43.95 3.79
461 462 4.987963 ACCCATGATCTGAATATCAGCA 57.012 40.909 0.00 0.00 43.95 4.41
462 463 6.939163 ACTTAACCCATGATCTGAATATCAGC 59.061 38.462 0.00 0.00 43.95 4.26
463 464 9.650539 CTACTTAACCCATGATCTGAATATCAG 57.349 37.037 0.00 0.88 45.59 2.90
464 465 9.379770 TCTACTTAACCCATGATCTGAATATCA 57.620 33.333 0.00 0.00 40.07 2.15
465 466 9.868277 CTCTACTTAACCCATGATCTGAATATC 57.132 37.037 0.00 0.00 0.00 1.63
466 467 8.317679 GCTCTACTTAACCCATGATCTGAATAT 58.682 37.037 0.00 0.00 0.00 1.28
467 468 7.510685 AGCTCTACTTAACCCATGATCTGAATA 59.489 37.037 0.00 0.00 0.00 1.75
468 469 6.328672 AGCTCTACTTAACCCATGATCTGAAT 59.671 38.462 0.00 0.00 0.00 2.57
469 470 5.663106 AGCTCTACTTAACCCATGATCTGAA 59.337 40.000 0.00 0.00 0.00 3.02
470 471 5.211973 AGCTCTACTTAACCCATGATCTGA 58.788 41.667 0.00 0.00 0.00 3.27
471 472 5.543507 AGCTCTACTTAACCCATGATCTG 57.456 43.478 0.00 0.00 0.00 2.90
473 474 5.245075 AGCTAGCTCTACTTAACCCATGATC 59.755 44.000 12.68 0.00 0.00 2.92
474 475 5.151454 AGCTAGCTCTACTTAACCCATGAT 58.849 41.667 12.68 0.00 0.00 2.45
475 476 4.547671 AGCTAGCTCTACTTAACCCATGA 58.452 43.478 12.68 0.00 0.00 3.07
476 477 4.946478 AGCTAGCTCTACTTAACCCATG 57.054 45.455 12.68 0.00 0.00 3.66
477 478 5.081032 CCTAGCTAGCTCTACTTAACCCAT 58.919 45.833 23.26 0.00 0.00 4.00
479 480 3.827876 CCCTAGCTAGCTCTACTTAACCC 59.172 52.174 23.26 0.00 0.00 4.11
480 481 4.278919 CACCCTAGCTAGCTCTACTTAACC 59.721 50.000 23.26 0.00 0.00 2.85
481 482 4.888823 ACACCCTAGCTAGCTCTACTTAAC 59.111 45.833 23.26 0.00 0.00 2.01
482 483 4.888239 CACACCCTAGCTAGCTCTACTTAA 59.112 45.833 23.26 0.00 0.00 1.85
483 484 4.462133 CACACCCTAGCTAGCTCTACTTA 58.538 47.826 23.26 0.65 0.00 2.24
484 485 3.292460 CACACCCTAGCTAGCTCTACTT 58.708 50.000 23.26 0.00 0.00 2.24
485 486 2.938838 CACACCCTAGCTAGCTCTACT 58.061 52.381 23.26 0.00 0.00 2.57
486 487 1.338655 GCACACCCTAGCTAGCTCTAC 59.661 57.143 23.26 0.00 0.00 2.59
487 488 1.693627 GCACACCCTAGCTAGCTCTA 58.306 55.000 23.26 3.28 0.00 2.43
488 489 1.388065 CGCACACCCTAGCTAGCTCT 61.388 60.000 23.26 0.00 0.00 4.09
489 490 1.066587 CGCACACCCTAGCTAGCTC 59.933 63.158 23.26 2.81 0.00 4.09
490 491 2.427245 CCGCACACCCTAGCTAGCT 61.427 63.158 23.12 23.12 0.00 3.32
491 492 1.389609 TACCGCACACCCTAGCTAGC 61.390 60.000 15.74 6.62 0.00 3.42
492 493 0.384669 GTACCGCACACCCTAGCTAG 59.615 60.000 14.20 14.20 0.00 3.42
493 494 0.033796 AGTACCGCACACCCTAGCTA 60.034 55.000 0.00 0.00 0.00 3.32
494 495 1.305046 AGTACCGCACACCCTAGCT 60.305 57.895 0.00 0.00 0.00 3.32
495 496 1.141234 GAGTACCGCACACCCTAGC 59.859 63.158 0.00 0.00 0.00 3.42
496 497 0.968901 TGGAGTACCGCACACCCTAG 60.969 60.000 0.00 0.00 37.10 3.02
497 498 1.077086 TGGAGTACCGCACACCCTA 59.923 57.895 0.00 0.00 37.10 3.53
498 499 2.203728 TGGAGTACCGCACACCCT 60.204 61.111 0.00 0.00 37.10 4.34
499 500 2.047560 GTGGAGTACCGCACACCC 60.048 66.667 0.00 0.00 45.14 4.61
505 506 1.515736 GTACGCAGTGGAGTACCGC 60.516 63.158 0.00 0.00 45.73 5.68
506 507 4.779819 GTACGCAGTGGAGTACCG 57.220 61.111 0.00 0.00 45.73 4.02
508 509 2.864968 CTTGAGTACGCAGTGGAGTAC 58.135 52.381 0.00 1.25 46.70 2.73
509 510 1.201647 GCTTGAGTACGCAGTGGAGTA 59.798 52.381 0.00 0.00 45.73 2.59
510 511 0.038159 GCTTGAGTACGCAGTGGAGT 60.038 55.000 0.00 0.00 45.73 3.85
511 512 0.244994 AGCTTGAGTACGCAGTGGAG 59.755 55.000 0.00 0.00 45.73 3.86
512 513 0.038251 CAGCTTGAGTACGCAGTGGA 60.038 55.000 0.00 0.00 45.73 4.02
513 514 1.630244 GCAGCTTGAGTACGCAGTGG 61.630 60.000 0.00 0.00 45.73 4.00
514 515 1.630244 GGCAGCTTGAGTACGCAGTG 61.630 60.000 0.00 0.84 45.73 3.66
516 517 2.447887 CGGCAGCTTGAGTACGCAG 61.448 63.158 0.00 0.00 0.00 5.18
517 518 2.432456 CGGCAGCTTGAGTACGCA 60.432 61.111 0.00 0.00 0.00 5.24
518 519 3.188786 CCGGCAGCTTGAGTACGC 61.189 66.667 0.00 0.00 0.00 4.42
519 520 3.188786 GCCGGCAGCTTGAGTACG 61.189 66.667 24.80 0.00 38.99 3.67
520 521 2.820037 GGCCGGCAGCTTGAGTAC 60.820 66.667 30.85 1.84 43.05 2.73
521 522 2.593468 GATGGCCGGCAGCTTGAGTA 62.593 60.000 30.85 2.36 43.05 2.59
522 523 3.984193 GATGGCCGGCAGCTTGAGT 62.984 63.158 30.85 3.65 43.05 3.41
523 524 3.207669 GATGGCCGGCAGCTTGAG 61.208 66.667 30.85 0.00 43.05 3.02
524 525 3.687321 GAGATGGCCGGCAGCTTGA 62.687 63.158 30.85 4.22 43.05 3.02
536 537 3.944015 CCTGCTAGGTTTTGAAGAGATGG 59.056 47.826 0.00 0.00 0.00 3.51
538 539 5.707066 ATCCTGCTAGGTTTTGAAGAGAT 57.293 39.130 0.00 0.00 36.53 2.75
543 544 4.700213 GCTTGTATCCTGCTAGGTTTTGAA 59.300 41.667 0.00 0.00 36.53 2.69
546 547 3.270877 CGCTTGTATCCTGCTAGGTTTT 58.729 45.455 0.00 0.00 36.53 2.43
551 552 5.986135 AGATTAAACGCTTGTATCCTGCTAG 59.014 40.000 0.00 0.00 0.00 3.42
554 555 4.570772 TCAGATTAAACGCTTGTATCCTGC 59.429 41.667 0.00 0.00 0.00 4.85
555 556 5.006746 GGTCAGATTAAACGCTTGTATCCTG 59.993 44.000 0.00 0.00 0.00 3.86
556 557 5.116882 GGTCAGATTAAACGCTTGTATCCT 58.883 41.667 0.00 0.00 0.00 3.24
557 558 4.873827 TGGTCAGATTAAACGCTTGTATCC 59.126 41.667 0.00 0.00 0.00 2.59
559 560 7.094377 ACAATTGGTCAGATTAAACGCTTGTAT 60.094 33.333 10.83 0.00 0.00 2.29
562 900 5.343058 CACAATTGGTCAGATTAAACGCTTG 59.657 40.000 10.83 0.00 0.00 4.01
564 902 4.518970 ACACAATTGGTCAGATTAAACGCT 59.481 37.500 10.83 0.00 0.00 5.07
567 905 8.641499 TTTCAACACAATTGGTCAGATTAAAC 57.359 30.769 10.83 0.00 0.00 2.01
570 908 9.906660 GTATTTTCAACACAATTGGTCAGATTA 57.093 29.630 10.83 0.00 0.00 1.75
578 916 7.581476 AGTAGTCGTATTTTCAACACAATTGG 58.419 34.615 10.83 1.35 0.00 3.16
714 1373 1.256812 GGGCCAAGTTGTGCATACTT 58.743 50.000 4.39 10.40 36.31 2.24
715 1374 0.112218 TGGGCCAAGTTGTGCATACT 59.888 50.000 2.13 0.00 0.00 2.12
717 1376 2.816777 TATGGGCCAAGTTGTGCATA 57.183 45.000 11.89 0.00 0.00 3.14
718 1377 1.935799 TTATGGGCCAAGTTGTGCAT 58.064 45.000 11.89 0.00 0.00 3.96
719 1378 1.709578 TTTATGGGCCAAGTTGTGCA 58.290 45.000 11.89 0.00 0.00 4.57
723 1382 6.708054 TGTTGTTTATTTTATGGGCCAAGTTG 59.292 34.615 11.89 0.00 0.00 3.16
750 1409 4.094294 CGTGGTGTAATCGTTGGATCAAAT 59.906 41.667 0.00 0.00 30.81 2.32
753 1412 2.231721 TCGTGGTGTAATCGTTGGATCA 59.768 45.455 0.00 0.00 30.81 2.92
755 1414 2.997986 GTTCGTGGTGTAATCGTTGGAT 59.002 45.455 0.00 0.00 0.00 3.41
756 1415 2.406130 GTTCGTGGTGTAATCGTTGGA 58.594 47.619 0.00 0.00 0.00 3.53
757 1416 1.461897 GGTTCGTGGTGTAATCGTTGG 59.538 52.381 0.00 0.00 0.00 3.77
758 1417 2.136728 TGGTTCGTGGTGTAATCGTTG 58.863 47.619 0.00 0.00 0.00 4.10
760 1419 2.232941 AGATGGTTCGTGGTGTAATCGT 59.767 45.455 0.00 0.00 0.00 3.73
762 1421 6.537301 TGAATAAGATGGTTCGTGGTGTAATC 59.463 38.462 0.00 0.00 0.00 1.75
763 1422 6.411376 TGAATAAGATGGTTCGTGGTGTAAT 58.589 36.000 0.00 0.00 0.00 1.89
764 1423 5.795972 TGAATAAGATGGTTCGTGGTGTAA 58.204 37.500 0.00 0.00 0.00 2.41
765 1424 5.408880 TGAATAAGATGGTTCGTGGTGTA 57.591 39.130 0.00 0.00 0.00 2.90
766 1425 4.280436 TGAATAAGATGGTTCGTGGTGT 57.720 40.909 0.00 0.00 0.00 4.16
767 1426 4.496341 GCATGAATAAGATGGTTCGTGGTG 60.496 45.833 0.00 0.00 40.18 4.17
793 1617 1.794864 CTGAGCTGCATGACACTGC 59.205 57.895 1.02 0.00 42.62 4.40
798 1622 1.396301 GTACTTGCTGAGCTGCATGAC 59.604 52.381 15.99 8.12 42.96 3.06
821 1648 3.057456 GTGTGACAGTGTGAGGTACTAGG 60.057 52.174 0.00 0.00 41.55 3.02
822 1649 3.568430 TGTGTGACAGTGTGAGGTACTAG 59.432 47.826 0.00 0.00 41.55 2.57
826 1653 2.764010 ACTTGTGTGACAGTGTGAGGTA 59.236 45.455 0.00 0.00 0.00 3.08
857 1691 1.203523 ACAAGAAGCGAGAGGTAGCAG 59.796 52.381 0.00 0.00 43.76 4.24
861 1695 2.231478 CCAAGACAAGAAGCGAGAGGTA 59.769 50.000 0.00 0.00 43.76 3.08
868 1702 0.384725 CGTTGCCAAGACAAGAAGCG 60.385 55.000 0.00 0.00 0.00 4.68
881 1715 6.210287 AGTAGCTAGGATATATTCGTTGCC 57.790 41.667 0.00 0.00 40.38 4.52
888 1722 9.116067 GACAAGATCGAGTAGCTAGGATATATT 57.884 37.037 0.00 0.00 0.00 1.28
891 1725 5.883673 GGACAAGATCGAGTAGCTAGGATAT 59.116 44.000 0.00 0.00 0.00 1.63
892 1726 5.247084 GGACAAGATCGAGTAGCTAGGATA 58.753 45.833 0.00 0.00 0.00 2.59
893 1727 4.076394 GGACAAGATCGAGTAGCTAGGAT 58.924 47.826 0.00 0.00 0.00 3.24
905 1739 2.487934 CTATTGGCTGGGACAAGATCG 58.512 52.381 0.00 0.00 38.70 3.69
926 1763 0.248843 AGGCAGACAGAAGCAGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
932 1769 2.028567 AGTTCACTAGGCAGACAGAAGC 60.029 50.000 0.00 0.00 0.00 3.86
949 1787 5.353111 CCTGGTAGCTAGCTAGAAAAGTTC 58.647 45.833 24.78 10.13 0.00 3.01
950 1788 4.162509 CCCTGGTAGCTAGCTAGAAAAGTT 59.837 45.833 24.78 0.00 0.00 2.66
968 1814 0.771127 TGAGGTGGTCTTTTCCCTGG 59.229 55.000 0.00 0.00 0.00 4.45
996 1842 1.452651 CACTAGCCCAGCCATGGTG 60.453 63.158 14.67 10.26 46.10 4.17
1113 1959 0.670546 CGCCGATGGTGAAGTTCACT 60.671 55.000 29.89 15.46 46.19 3.41
1179 2025 2.359850 GAGGCGTCCATGTTGGCA 60.360 61.111 0.00 0.00 37.47 4.92
1217 2063 3.117131 AGAATTCAGAGGTTGGGGTTGTT 60.117 43.478 8.44 0.00 0.00 2.83
1218 2064 2.447047 AGAATTCAGAGGTTGGGGTTGT 59.553 45.455 8.44 0.00 0.00 3.32
1219 2065 3.160679 AGAATTCAGAGGTTGGGGTTG 57.839 47.619 8.44 0.00 0.00 3.77
1234 2086 5.589050 GGGATGCGGAAGTAGTTAAAGAATT 59.411 40.000 0.00 0.00 0.00 2.17
1248 2101 2.045708 GTGCACATGGGATGCGGAA 61.046 57.895 13.17 0.00 46.49 4.30
1299 2174 1.582953 CATGCACAAACACACACAACG 59.417 47.619 0.00 0.00 0.00 4.10
1358 2238 2.747855 CACCTTCTTCAGCCGCCC 60.748 66.667 0.00 0.00 0.00 6.13
1405 2285 3.647649 CTGCGCCGACTGGATGACA 62.648 63.158 4.18 0.00 37.49 3.58
1754 2659 6.391227 AGCTTACAAAACTACTGCAACAAT 57.609 33.333 0.00 0.00 0.00 2.71
1817 2725 3.976654 AGGACATACACTGCCCTAATCAT 59.023 43.478 0.00 0.00 35.68 2.45
1818 2726 3.134623 CAGGACATACACTGCCCTAATCA 59.865 47.826 0.00 0.00 35.14 2.57
1875 2784 8.517062 ACGAAGTAGGAGTGTTAGTTATACAT 57.483 34.615 0.00 0.00 41.94 2.29
1886 2795 3.817647 ACGAACTTACGAAGTAGGAGTGT 59.182 43.478 0.00 0.00 46.93 3.55
1887 2796 4.416505 ACGAACTTACGAAGTAGGAGTG 57.583 45.455 0.00 0.00 46.93 3.51
1907 2843 6.404712 AGAAACGATAAATCCGACTTGAAC 57.595 37.500 0.00 0.00 0.00 3.18
1982 2952 5.396772 CCTTTGTATCCTAGCTGGTTGATGA 60.397 44.000 0.00 0.00 37.07 2.92
2020 2996 7.687941 TTCAGTTTTTGGTTAAATTTTGGCA 57.312 28.000 0.00 0.00 0.00 4.92
2028 3004 7.547370 CCTGTGACATTTCAGTTTTTGGTTAAA 59.453 33.333 0.00 0.00 30.10 1.52
2031 3007 5.418676 CCTGTGACATTTCAGTTTTTGGTT 58.581 37.500 0.00 0.00 30.10 3.67
2060 3036 1.629043 AACTCCTGGTCTCAAGCGTA 58.371 50.000 0.00 0.00 0.00 4.42
2078 3054 4.682860 GTCGTTTGTAGCTGCTACTTGTAA 59.317 41.667 32.64 19.84 37.78 2.41
2166 3145 1.699634 GGCATCTATGGTTGGCCTCTA 59.300 52.381 3.32 0.00 41.39 2.43
2179 3158 0.604073 TCCGTGTTCGTTGGCATCTA 59.396 50.000 0.00 0.00 35.01 1.98
2230 3209 2.110213 GGGTCGACAACAGTGCCA 59.890 61.111 18.91 0.00 0.00 4.92
2239 3218 1.719529 TTAGTCCCTTTGGGTCGACA 58.280 50.000 18.91 0.00 44.74 4.35
2275 3254 0.335361 ATGGACGTAGGGGAGACTGT 59.665 55.000 0.00 0.00 0.00 3.55
2349 3328 4.326826 CAATCCTTTAGTGGCTCTTGTCA 58.673 43.478 0.00 0.00 0.00 3.58
2363 3342 1.678970 GGCTGGTCCGCAATCCTTT 60.679 57.895 7.78 0.00 0.00 3.11
2396 3375 2.010582 CTCTCTAGGCCGCCAGTGAC 62.011 65.000 13.15 0.00 0.00 3.67
2427 3406 3.799286 TTGGTGAATGGTGGCGGCA 62.799 57.895 7.97 7.97 0.00 5.69
2460 3439 0.105453 TCCTAGGGATGGGCAGAGAC 60.105 60.000 9.46 0.00 0.00 3.36
2465 3444 1.760875 GTCGTCCTAGGGATGGGCA 60.761 63.158 9.46 0.00 39.09 5.36
2521 3500 2.994417 GGCATTTTGGGCCGGACA 60.994 61.111 11.00 1.32 42.39 4.02
2535 3514 1.531365 CCAGGTGAAAGCCTTGGCA 60.531 57.895 14.54 0.00 36.58 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.