Multiple sequence alignment - TraesCS1A01G355400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G355400 chr1A 100.000 4502 0 0 1 4502 537968948 537973449 0.000000e+00 8314.0
1 TraesCS1A01G355400 chr1A 79.688 128 24 2 4078 4204 398666635 398666509 1.720000e-14 91.6
2 TraesCS1A01G355400 chr1B 91.877 3053 149 55 882 3895 597454095 597451103 0.000000e+00 4172.0
3 TraesCS1A01G355400 chr1B 88.961 616 43 12 3895 4502 597450993 597450395 0.000000e+00 737.0
4 TraesCS1A01G355400 chr1B 80.800 125 22 2 4078 4201 429700248 429700125 3.710000e-16 97.1
5 TraesCS1A01G355400 chr1B 80.000 135 10 10 724 856 597454269 597454150 2.890000e-12 84.2
6 TraesCS1A01G355400 chr1D 95.531 2193 72 11 1723 3893 439871360 439869172 0.000000e+00 3483.0
7 TraesCS1A01G355400 chr1D 89.413 1039 52 29 679 1703 439872348 439871354 0.000000e+00 1256.0
8 TraesCS1A01G355400 chr1D 78.439 538 99 12 147 671 426756922 426757455 7.220000e-88 335.0
9 TraesCS1A01G355400 chr1D 90.957 188 9 5 4277 4457 439868997 439868811 3.480000e-61 246.0
10 TraesCS1A01G355400 chr1D 81.102 127 18 4 4078 4201 317590905 317590782 3.710000e-16 97.1
11 TraesCS1A01G355400 chr1D 100.000 42 0 0 3895 3936 439869044 439869003 1.340000e-10 78.7
12 TraesCS1A01G355400 chr4A 82.099 486 74 8 147 624 136640248 136639768 1.950000e-108 403.0
13 TraesCS1A01G355400 chr7A 78.919 555 93 15 146 680 255886423 255886973 5.540000e-94 355.0
14 TraesCS1A01G355400 chr3B 82.594 293 50 1 366 657 250469005 250468713 1.610000e-64 257.0
15 TraesCS1A01G355400 chr5B 81.081 148 22 5 4078 4220 485912069 485912215 3.680000e-21 113.0
16 TraesCS1A01G355400 chr6D 82.222 135 19 5 4078 4209 124941254 124941386 1.320000e-20 111.0
17 TraesCS1A01G355400 chr6B 81.481 135 20 5 4078 4209 222680057 222680189 6.160000e-19 106.0
18 TraesCS1A01G355400 chr2A 81.250 128 20 4 4074 4200 4215414 4215538 2.870000e-17 100.0
19 TraesCS1A01G355400 chr2B 82.609 115 17 3 4089 4201 508959623 508959510 1.030000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G355400 chr1A 537968948 537973449 4501 False 8314.000 8314 100.00000 1 4502 1 chr1A.!!$F1 4501
1 TraesCS1A01G355400 chr1B 597450395 597454269 3874 True 1664.400 4172 86.94600 724 4502 3 chr1B.!!$R2 3778
2 TraesCS1A01G355400 chr1D 439868811 439872348 3537 True 1265.925 3483 93.97525 679 4457 4 chr1D.!!$R2 3778
3 TraesCS1A01G355400 chr1D 426756922 426757455 533 False 335.000 335 78.43900 147 671 1 chr1D.!!$F1 524
4 TraesCS1A01G355400 chr7A 255886423 255886973 550 False 355.000 355 78.91900 146 680 1 chr7A.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.032416 GGGAGGAGGGTGCTACTACA 60.032 60.0 0.00 0.0 0.00 2.74 F
643 662 0.104725 AGGAGGTCTGATCCATCCCC 60.105 60.0 0.49 0.0 39.47 4.81 F
645 664 0.104725 GAGGTCTGATCCATCCCCCT 60.105 60.0 0.00 0.0 0.00 4.79 F
1558 1634 0.249699 TGGTTGCGTACTGGTGTCTG 60.250 55.0 0.00 0.0 0.00 3.51 F
1559 1635 0.249741 GGTTGCGTACTGGTGTCTGT 60.250 55.0 0.00 0.0 0.00 3.41 F
1781 1863 0.260230 TCACTTGTTTTGGCCCTGGA 59.740 50.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1575 0.399454 ACTGCAGACATCACAAGGCT 59.601 50.000 23.35 0.0 0.00 4.58 R
1901 1984 0.606604 AGCAAATTGGCAAGCTCAGG 59.393 50.000 7.75 0.0 35.83 3.86 R
2113 2196 0.613260 AAGGGCTCATGCTCACGTAA 59.387 50.000 0.00 0.0 43.51 3.18 R
2883 2967 1.674962 GACAGCATTTCATCAGAGGCC 59.325 52.381 0.00 0.0 0.00 5.19 R
2917 3001 2.092429 GGTCTGGATACCTTGATGCCAA 60.092 50.000 0.00 0.0 36.53 4.52 R
3758 3862 0.037326 ACACTGCCCATGTCTACACG 60.037 55.000 0.00 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.792716 AAGCCCGAAATCAAAAGCG 57.207 47.368 0.00 0.00 0.00 4.68
19 20 0.388520 AAGCCCGAAATCAAAAGCGC 60.389 50.000 0.00 0.00 0.00 5.92
20 21 2.152078 GCCCGAAATCAAAAGCGCG 61.152 57.895 0.00 0.00 0.00 6.86
21 22 1.209127 CCCGAAATCAAAAGCGCGT 59.791 52.632 8.43 0.00 0.00 6.01
22 23 1.065031 CCCGAAATCAAAAGCGCGTG 61.065 55.000 8.43 1.51 0.00 5.34
23 24 0.110419 CCGAAATCAAAAGCGCGTGA 60.110 50.000 8.43 12.74 0.00 4.35
24 25 1.241744 CGAAATCAAAAGCGCGTGAG 58.758 50.000 8.43 3.70 0.00 3.51
25 26 1.398451 CGAAATCAAAAGCGCGTGAGT 60.398 47.619 8.43 10.77 0.00 3.41
26 27 2.159894 CGAAATCAAAAGCGCGTGAGTA 60.160 45.455 8.43 0.00 0.00 2.59
27 28 3.483574 CGAAATCAAAAGCGCGTGAGTAT 60.484 43.478 8.43 5.81 0.00 2.12
28 29 4.403453 GAAATCAAAAGCGCGTGAGTATT 58.597 39.130 8.43 10.56 0.00 1.89
29 30 4.419522 AATCAAAAGCGCGTGAGTATTT 57.580 36.364 8.43 0.73 0.00 1.40
30 31 3.889196 TCAAAAGCGCGTGAGTATTTT 57.111 38.095 8.43 0.00 0.00 1.82
31 32 3.805823 TCAAAAGCGCGTGAGTATTTTC 58.194 40.909 8.43 0.00 0.00 2.29
32 33 3.496884 TCAAAAGCGCGTGAGTATTTTCT 59.503 39.130 8.43 0.00 0.00 2.52
33 34 3.724295 AAAGCGCGTGAGTATTTTCTC 57.276 42.857 8.43 0.00 35.28 2.87
34 35 1.641577 AGCGCGTGAGTATTTTCTCC 58.358 50.000 8.43 0.00 33.93 3.71
35 36 0.651031 GCGCGTGAGTATTTTCTCCC 59.349 55.000 8.43 0.00 33.93 4.30
36 37 0.921347 CGCGTGAGTATTTTCTCCCG 59.079 55.000 0.00 0.00 38.10 5.14
37 38 1.287425 GCGTGAGTATTTTCTCCCGG 58.713 55.000 0.00 0.00 36.25 5.73
38 39 1.287425 CGTGAGTATTTTCTCCCGGC 58.713 55.000 0.00 0.00 33.20 6.13
39 40 1.404986 CGTGAGTATTTTCTCCCGGCA 60.405 52.381 0.00 0.00 33.20 5.69
40 41 2.741878 CGTGAGTATTTTCTCCCGGCAT 60.742 50.000 0.00 0.00 33.20 4.40
41 42 2.872858 GTGAGTATTTTCTCCCGGCATC 59.127 50.000 0.00 0.00 33.93 3.91
42 43 2.135933 GAGTATTTTCTCCCGGCATCG 58.864 52.381 0.00 0.00 0.00 3.84
55 56 4.626081 CATCGGGCGTCCCATCCC 62.626 72.222 14.17 0.00 45.83 3.85
61 62 4.832608 GCGTCCCATCCCCACGTC 62.833 72.222 0.00 0.00 35.91 4.34
62 63 4.508128 CGTCCCATCCCCACGTCG 62.508 72.222 0.00 0.00 0.00 5.12
63 64 3.072468 GTCCCATCCCCACGTCGA 61.072 66.667 0.00 0.00 0.00 4.20
64 65 2.284039 TCCCATCCCCACGTCGAA 60.284 61.111 0.00 0.00 0.00 3.71
65 66 2.186903 CCCATCCCCACGTCGAAG 59.813 66.667 0.00 0.00 0.00 3.79
66 67 2.355986 CCCATCCCCACGTCGAAGA 61.356 63.158 5.05 0.00 0.00 2.87
67 68 1.686325 CCCATCCCCACGTCGAAGAT 61.686 60.000 5.05 0.00 40.67 2.40
68 69 0.249489 CCATCCCCACGTCGAAGATC 60.249 60.000 5.05 0.00 40.67 2.75
69 70 0.747255 CATCCCCACGTCGAAGATCT 59.253 55.000 5.05 0.00 40.67 2.75
70 71 1.954382 CATCCCCACGTCGAAGATCTA 59.046 52.381 5.05 0.00 40.67 1.98
71 72 1.386533 TCCCCACGTCGAAGATCTAC 58.613 55.000 5.05 0.00 40.67 2.59
72 73 1.064906 TCCCCACGTCGAAGATCTACT 60.065 52.381 5.05 0.00 40.67 2.57
73 74 1.334243 CCCCACGTCGAAGATCTACTC 59.666 57.143 5.05 0.00 40.67 2.59
74 75 1.003759 CCCACGTCGAAGATCTACTCG 60.004 57.143 10.02 10.02 40.67 4.18
75 76 1.003759 CCACGTCGAAGATCTACTCGG 60.004 57.143 15.04 4.72 40.67 4.63
76 77 1.003759 CACGTCGAAGATCTACTCGGG 60.004 57.143 15.04 10.63 40.67 5.14
77 78 1.297664 CGTCGAAGATCTACTCGGGT 58.702 55.000 15.04 0.00 40.67 5.28
78 79 1.261089 CGTCGAAGATCTACTCGGGTC 59.739 57.143 15.04 7.06 40.67 4.46
79 80 2.563702 GTCGAAGATCTACTCGGGTCT 58.436 52.381 15.04 0.00 40.67 3.85
80 81 2.288458 GTCGAAGATCTACTCGGGTCTG 59.712 54.545 15.04 0.00 40.67 3.51
81 82 1.002251 CGAAGATCTACTCGGGTCTGC 60.002 57.143 8.64 0.00 0.00 4.26
82 83 2.303175 GAAGATCTACTCGGGTCTGCT 58.697 52.381 0.00 0.00 0.00 4.24
83 84 1.975660 AGATCTACTCGGGTCTGCTC 58.024 55.000 0.00 0.00 0.00 4.26
84 85 0.955905 GATCTACTCGGGTCTGCTCC 59.044 60.000 0.00 0.00 0.00 4.70
85 86 0.468400 ATCTACTCGGGTCTGCTCCC 60.468 60.000 0.00 2.80 43.78 4.30
86 87 2.043248 TACTCGGGTCTGCTCCCC 60.043 66.667 0.00 1.94 44.32 4.81
96 97 2.203640 TGCTCCCCGCGGATAGAT 60.204 61.111 30.73 0.00 43.27 1.98
97 98 2.262915 GCTCCCCGCGGATAGATG 59.737 66.667 30.73 8.54 37.60 2.90
98 99 2.276116 GCTCCCCGCGGATAGATGA 61.276 63.158 30.73 11.67 37.60 2.92
99 100 1.886585 CTCCCCGCGGATAGATGAG 59.113 63.158 30.73 17.16 37.60 2.90
100 101 0.896019 CTCCCCGCGGATAGATGAGT 60.896 60.000 30.73 0.00 37.60 3.41
101 102 1.179174 TCCCCGCGGATAGATGAGTG 61.179 60.000 30.73 5.03 31.13 3.51
102 103 1.290324 CCCGCGGATAGATGAGTGG 59.710 63.158 30.73 0.00 0.00 4.00
103 104 1.290324 CCGCGGATAGATGAGTGGG 59.710 63.158 24.07 0.00 0.00 4.61
104 105 1.290324 CGCGGATAGATGAGTGGGG 59.710 63.158 0.00 0.00 0.00 4.96
105 106 1.674057 GCGGATAGATGAGTGGGGG 59.326 63.158 0.00 0.00 0.00 5.40
106 107 0.832135 GCGGATAGATGAGTGGGGGA 60.832 60.000 0.00 0.00 0.00 4.81
107 108 1.261480 CGGATAGATGAGTGGGGGAG 58.739 60.000 0.00 0.00 0.00 4.30
108 109 1.650528 GGATAGATGAGTGGGGGAGG 58.349 60.000 0.00 0.00 0.00 4.30
109 110 1.150135 GGATAGATGAGTGGGGGAGGA 59.850 57.143 0.00 0.00 0.00 3.71
110 111 2.534990 GATAGATGAGTGGGGGAGGAG 58.465 57.143 0.00 0.00 0.00 3.69
111 112 0.563173 TAGATGAGTGGGGGAGGAGG 59.437 60.000 0.00 0.00 0.00 4.30
112 113 1.768077 GATGAGTGGGGGAGGAGGG 60.768 68.421 0.00 0.00 0.00 4.30
113 114 2.553438 GATGAGTGGGGGAGGAGGGT 62.553 65.000 0.00 0.00 0.00 4.34
114 115 2.689034 GAGTGGGGGAGGAGGGTG 60.689 72.222 0.00 0.00 0.00 4.61
117 118 3.289211 TGGGGGAGGAGGGTGCTA 61.289 66.667 0.00 0.00 0.00 3.49
118 119 2.768769 GGGGGAGGAGGGTGCTAC 60.769 72.222 0.00 0.00 0.00 3.58
119 120 2.369001 GGGGAGGAGGGTGCTACT 59.631 66.667 0.00 0.00 0.00 2.57
120 121 1.624753 GGGGAGGAGGGTGCTACTA 59.375 63.158 0.00 0.00 0.00 1.82
121 122 0.759812 GGGGAGGAGGGTGCTACTAC 60.760 65.000 0.00 0.00 0.00 2.73
122 123 0.032416 GGGAGGAGGGTGCTACTACA 60.032 60.000 0.00 0.00 0.00 2.74
123 124 1.621622 GGGAGGAGGGTGCTACTACAA 60.622 57.143 0.00 0.00 0.00 2.41
124 125 2.185387 GGAGGAGGGTGCTACTACAAA 58.815 52.381 0.00 0.00 0.00 2.83
125 126 2.570302 GGAGGAGGGTGCTACTACAAAA 59.430 50.000 0.00 0.00 0.00 2.44
126 127 3.597255 GAGGAGGGTGCTACTACAAAAC 58.403 50.000 0.00 0.00 0.00 2.43
127 128 2.976882 AGGAGGGTGCTACTACAAAACA 59.023 45.455 0.00 0.00 0.00 2.83
128 129 3.587506 AGGAGGGTGCTACTACAAAACAT 59.412 43.478 0.00 0.00 0.00 2.71
129 130 3.689649 GGAGGGTGCTACTACAAAACATG 59.310 47.826 0.00 0.00 0.00 3.21
130 131 4.324267 GAGGGTGCTACTACAAAACATGT 58.676 43.478 0.00 0.00 46.36 3.21
131 132 4.324267 AGGGTGCTACTACAAAACATGTC 58.676 43.478 0.00 0.00 42.70 3.06
132 133 4.069304 GGGTGCTACTACAAAACATGTCA 58.931 43.478 0.00 0.00 42.70 3.58
133 134 4.700213 GGGTGCTACTACAAAACATGTCAT 59.300 41.667 0.00 0.00 42.70 3.06
134 135 5.183140 GGGTGCTACTACAAAACATGTCATT 59.817 40.000 0.00 0.00 42.70 2.57
135 136 6.086222 GGTGCTACTACAAAACATGTCATTG 58.914 40.000 17.97 17.97 42.70 2.82
136 137 6.293955 GGTGCTACTACAAAACATGTCATTGT 60.294 38.462 24.66 24.66 42.70 2.71
137 138 7.138736 GTGCTACTACAAAACATGTCATTGTT 58.861 34.615 25.77 16.11 42.70 2.83
138 139 7.323656 GTGCTACTACAAAACATGTCATTGTTC 59.676 37.037 25.77 14.90 42.70 3.18
139 140 7.228507 TGCTACTACAAAACATGTCATTGTTCT 59.771 33.333 25.77 16.99 42.70 3.01
140 141 8.076178 GCTACTACAAAACATGTCATTGTTCTT 58.924 33.333 25.77 16.46 42.70 2.52
141 142 9.950680 CTACTACAAAACATGTCATTGTTCTTT 57.049 29.630 25.77 14.79 42.70 2.52
231 233 5.643421 ATCATCCATAGGCTTCTCAAACT 57.357 39.130 0.00 0.00 0.00 2.66
236 238 6.560003 TCCATAGGCTTCTCAAACTAATCA 57.440 37.500 0.00 0.00 0.00 2.57
238 240 5.529060 CCATAGGCTTCTCAAACTAATCACC 59.471 44.000 0.00 0.00 0.00 4.02
245 247 4.556233 TCTCAAACTAATCACCTGTGACG 58.444 43.478 1.39 0.00 43.11 4.35
252 254 4.935808 ACTAATCACCTGTGACGGAAAATC 59.064 41.667 1.39 0.00 43.11 2.17
257 259 0.721718 CTGTGACGGAAAATCTCGCC 59.278 55.000 0.00 0.00 0.00 5.54
263 265 1.709147 CGGAAAATCTCGCCAGCCTG 61.709 60.000 0.00 0.00 0.00 4.85
287 296 4.205587 CAGAGCCATCTAATTTGCTTCCT 58.794 43.478 0.00 0.00 33.22 3.36
296 305 9.736023 CCATCTAATTTGCTTCCTTATTACAAC 57.264 33.333 0.00 0.00 0.00 3.32
300 309 9.620660 CTAATTTGCTTCCTTATTACAACGTTT 57.379 29.630 0.00 0.00 0.00 3.60
301 310 7.867445 ATTTGCTTCCTTATTACAACGTTTG 57.133 32.000 0.00 0.00 0.00 2.93
350 359 5.682862 GCCATAAAGTAGCAATCATCAAACG 59.317 40.000 0.00 0.00 0.00 3.60
356 365 1.131883 AGCAATCATCAAACGCTGCTC 59.868 47.619 0.00 0.00 35.25 4.26
363 372 3.702048 AAACGCTGCTCCCGCCTA 61.702 61.111 0.00 0.00 34.43 3.93
383 402 5.630069 GCCTATTGTCCTCCTTCTTCATTGA 60.630 44.000 0.00 0.00 0.00 2.57
426 445 7.204604 TGTCAGAGTTAACAACAAGACGATTA 58.795 34.615 8.61 0.00 33.96 1.75
433 452 3.811083 ACAACAAGACGATTACAACCCA 58.189 40.909 0.00 0.00 0.00 4.51
435 454 3.478857 ACAAGACGATTACAACCCACA 57.521 42.857 0.00 0.00 0.00 4.17
453 472 4.931002 CCCACATTTTGTGCAAGGAATAAG 59.069 41.667 2.09 0.00 46.51 1.73
454 473 4.389687 CCACATTTTGTGCAAGGAATAAGC 59.610 41.667 2.09 0.00 46.51 3.09
455 474 4.389687 CACATTTTGTGCAAGGAATAAGCC 59.610 41.667 0.00 0.00 41.89 4.35
456 475 4.040217 ACATTTTGTGCAAGGAATAAGCCA 59.960 37.500 0.00 0.00 0.00 4.75
457 476 4.679373 TTTTGTGCAAGGAATAAGCCAA 57.321 36.364 0.00 0.00 0.00 4.52
458 477 4.679373 TTTGTGCAAGGAATAAGCCAAA 57.321 36.364 0.00 0.00 0.00 3.28
459 478 3.658757 TGTGCAAGGAATAAGCCAAAC 57.341 42.857 0.00 0.00 0.00 2.93
460 479 2.298729 TGTGCAAGGAATAAGCCAAACC 59.701 45.455 0.00 0.00 0.00 3.27
461 480 2.562738 GTGCAAGGAATAAGCCAAACCT 59.437 45.455 0.00 0.00 0.00 3.50
462 481 3.006859 GTGCAAGGAATAAGCCAAACCTT 59.993 43.478 0.00 0.00 40.91 3.50
463 482 4.219725 GTGCAAGGAATAAGCCAAACCTTA 59.780 41.667 0.00 0.00 38.65 2.69
464 483 4.462483 TGCAAGGAATAAGCCAAACCTTAG 59.538 41.667 0.00 0.00 38.65 2.18
465 484 4.705023 GCAAGGAATAAGCCAAACCTTAGA 59.295 41.667 0.00 0.00 38.65 2.10
466 485 5.163612 GCAAGGAATAAGCCAAACCTTAGAG 60.164 44.000 0.00 0.00 38.65 2.43
467 486 4.527944 AGGAATAAGCCAAACCTTAGAGC 58.472 43.478 0.00 0.00 31.39 4.09
468 487 3.632604 GGAATAAGCCAAACCTTAGAGCC 59.367 47.826 0.00 0.00 31.39 4.70
469 488 4.270008 GAATAAGCCAAACCTTAGAGCCA 58.730 43.478 0.00 0.00 31.39 4.75
470 489 2.675658 AAGCCAAACCTTAGAGCCAA 57.324 45.000 0.00 0.00 0.00 4.52
471 490 2.907458 AGCCAAACCTTAGAGCCAAT 57.093 45.000 0.00 0.00 0.00 3.16
472 491 2.450476 AGCCAAACCTTAGAGCCAATG 58.550 47.619 0.00 0.00 0.00 2.82
473 492 1.134995 GCCAAACCTTAGAGCCAATGC 60.135 52.381 0.00 0.00 37.95 3.56
483 502 4.225497 GCCAATGCTTCTACCGCT 57.775 55.556 0.00 0.00 33.53 5.52
484 503 3.379650 GCCAATGCTTCTACCGCTA 57.620 52.632 0.00 0.00 33.53 4.26
485 504 1.663695 GCCAATGCTTCTACCGCTAA 58.336 50.000 0.00 0.00 33.53 3.09
486 505 2.222027 GCCAATGCTTCTACCGCTAAT 58.778 47.619 0.00 0.00 33.53 1.73
487 506 3.399330 GCCAATGCTTCTACCGCTAATA 58.601 45.455 0.00 0.00 33.53 0.98
488 507 3.186613 GCCAATGCTTCTACCGCTAATAC 59.813 47.826 0.00 0.00 33.53 1.89
489 508 4.377021 CCAATGCTTCTACCGCTAATACA 58.623 43.478 0.00 0.00 0.00 2.29
490 509 4.997395 CCAATGCTTCTACCGCTAATACAT 59.003 41.667 0.00 0.00 0.00 2.29
491 510 5.120830 CCAATGCTTCTACCGCTAATACATC 59.879 44.000 0.00 0.00 0.00 3.06
492 511 4.929819 TGCTTCTACCGCTAATACATCA 57.070 40.909 0.00 0.00 0.00 3.07
493 512 4.871513 TGCTTCTACCGCTAATACATCAG 58.128 43.478 0.00 0.00 0.00 2.90
494 513 3.675698 GCTTCTACCGCTAATACATCAGC 59.324 47.826 0.00 0.00 0.00 4.26
495 514 4.796290 GCTTCTACCGCTAATACATCAGCA 60.796 45.833 0.00 0.00 37.66 4.41
496 515 4.238761 TCTACCGCTAATACATCAGCAC 57.761 45.455 0.00 0.00 37.66 4.40
497 516 2.979814 ACCGCTAATACATCAGCACA 57.020 45.000 0.00 0.00 37.66 4.57
498 517 2.550978 ACCGCTAATACATCAGCACAC 58.449 47.619 0.00 0.00 37.66 3.82
499 518 1.867233 CCGCTAATACATCAGCACACC 59.133 52.381 0.00 0.00 37.66 4.16
500 519 2.549926 CGCTAATACATCAGCACACCA 58.450 47.619 0.00 0.00 37.66 4.17
501 520 2.935849 CGCTAATACATCAGCACACCAA 59.064 45.455 0.00 0.00 37.66 3.67
502 521 3.561310 CGCTAATACATCAGCACACCAAT 59.439 43.478 0.00 0.00 37.66 3.16
503 522 4.319046 CGCTAATACATCAGCACACCAATC 60.319 45.833 0.00 0.00 37.66 2.67
504 523 4.576053 GCTAATACATCAGCACACCAATCA 59.424 41.667 0.00 0.00 37.73 2.57
505 524 5.066375 GCTAATACATCAGCACACCAATCAA 59.934 40.000 0.00 0.00 37.73 2.57
506 525 6.238842 GCTAATACATCAGCACACCAATCAAT 60.239 38.462 0.00 0.00 37.73 2.57
507 526 5.762825 ATACATCAGCACACCAATCAATC 57.237 39.130 0.00 0.00 0.00 2.67
508 527 3.423749 ACATCAGCACACCAATCAATCA 58.576 40.909 0.00 0.00 0.00 2.57
509 528 4.021229 ACATCAGCACACCAATCAATCAT 58.979 39.130 0.00 0.00 0.00 2.45
510 529 4.097437 ACATCAGCACACCAATCAATCATC 59.903 41.667 0.00 0.00 0.00 2.92
511 530 3.018856 TCAGCACACCAATCAATCATCC 58.981 45.455 0.00 0.00 0.00 3.51
512 531 2.756207 CAGCACACCAATCAATCATCCA 59.244 45.455 0.00 0.00 0.00 3.41
513 532 3.021695 AGCACACCAATCAATCATCCAG 58.978 45.455 0.00 0.00 0.00 3.86
514 533 2.756760 GCACACCAATCAATCATCCAGT 59.243 45.455 0.00 0.00 0.00 4.00
515 534 3.194116 GCACACCAATCAATCATCCAGTT 59.806 43.478 0.00 0.00 0.00 3.16
516 535 4.322198 GCACACCAATCAATCATCCAGTTT 60.322 41.667 0.00 0.00 0.00 2.66
517 536 5.786311 CACACCAATCAATCATCCAGTTTT 58.214 37.500 0.00 0.00 0.00 2.43
518 537 5.865552 CACACCAATCAATCATCCAGTTTTC 59.134 40.000 0.00 0.00 0.00 2.29
519 538 5.539574 ACACCAATCAATCATCCAGTTTTCA 59.460 36.000 0.00 0.00 0.00 2.69
520 539 5.865552 CACCAATCAATCATCCAGTTTTCAC 59.134 40.000 0.00 0.00 0.00 3.18
521 540 5.047092 ACCAATCAATCATCCAGTTTTCACC 60.047 40.000 0.00 0.00 0.00 4.02
522 541 5.047164 CCAATCAATCATCCAGTTTTCACCA 60.047 40.000 0.00 0.00 0.00 4.17
523 542 6.457355 CAATCAATCATCCAGTTTTCACCAA 58.543 36.000 0.00 0.00 0.00 3.67
524 543 5.452078 TCAATCATCCAGTTTTCACCAAC 57.548 39.130 0.00 0.00 0.00 3.77
525 544 4.892345 TCAATCATCCAGTTTTCACCAACA 59.108 37.500 0.00 0.00 0.00 3.33
526 545 5.009911 TCAATCATCCAGTTTTCACCAACAG 59.990 40.000 0.00 0.00 0.00 3.16
527 546 3.897239 TCATCCAGTTTTCACCAACAGT 58.103 40.909 0.00 0.00 0.00 3.55
542 561 6.190954 ACCAACAGTGAACTTTACTTTGTC 57.809 37.500 0.00 0.00 0.00 3.18
543 562 5.708230 ACCAACAGTGAACTTTACTTTGTCA 59.292 36.000 0.00 0.00 0.00 3.58
544 563 6.377146 ACCAACAGTGAACTTTACTTTGTCAT 59.623 34.615 0.00 0.00 0.00 3.06
545 564 6.912591 CCAACAGTGAACTTTACTTTGTCATC 59.087 38.462 0.00 0.00 0.00 2.92
546 565 7.201732 CCAACAGTGAACTTTACTTTGTCATCT 60.202 37.037 0.00 0.00 0.00 2.90
547 566 7.251704 ACAGTGAACTTTACTTTGTCATCTG 57.748 36.000 0.00 0.00 0.00 2.90
548 567 6.823689 ACAGTGAACTTTACTTTGTCATCTGT 59.176 34.615 0.00 0.00 0.00 3.41
549 568 7.128331 CAGTGAACTTTACTTTGTCATCTGTG 58.872 38.462 0.00 0.00 0.00 3.66
550 569 7.011389 CAGTGAACTTTACTTTGTCATCTGTGA 59.989 37.037 0.00 0.00 0.00 3.58
551 570 7.225538 AGTGAACTTTACTTTGTCATCTGTGAG 59.774 37.037 0.00 0.00 34.36 3.51
552 571 6.483307 TGAACTTTACTTTGTCATCTGTGAGG 59.517 38.462 0.00 0.00 34.36 3.86
553 572 6.174720 ACTTTACTTTGTCATCTGTGAGGA 57.825 37.500 0.00 0.00 34.36 3.71
554 573 6.773638 ACTTTACTTTGTCATCTGTGAGGAT 58.226 36.000 0.00 0.00 34.36 3.24
555 574 7.907389 ACTTTACTTTGTCATCTGTGAGGATA 58.093 34.615 0.00 0.00 34.36 2.59
556 575 8.037758 ACTTTACTTTGTCATCTGTGAGGATAG 58.962 37.037 0.00 0.00 34.36 2.08
557 576 4.764172 ACTTTGTCATCTGTGAGGATAGC 58.236 43.478 0.00 0.00 34.36 2.97
558 577 3.827008 TTGTCATCTGTGAGGATAGCC 57.173 47.619 0.00 0.00 34.36 3.93
559 578 2.042464 TGTCATCTGTGAGGATAGCCC 58.958 52.381 0.00 0.00 34.36 5.19
560 579 2.042464 GTCATCTGTGAGGATAGCCCA 58.958 52.381 0.00 0.00 37.41 5.36
561 580 2.636893 GTCATCTGTGAGGATAGCCCAT 59.363 50.000 0.00 0.00 37.41 4.00
562 581 2.636403 TCATCTGTGAGGATAGCCCATG 59.364 50.000 0.00 0.00 37.41 3.66
563 582 2.180946 TCTGTGAGGATAGCCCATGT 57.819 50.000 0.00 0.00 37.41 3.21
564 583 2.481441 TCTGTGAGGATAGCCCATGTT 58.519 47.619 0.00 0.00 37.41 2.71
565 584 2.171237 TCTGTGAGGATAGCCCATGTTG 59.829 50.000 0.00 0.00 37.41 3.33
566 585 1.915489 TGTGAGGATAGCCCATGTTGT 59.085 47.619 0.00 0.00 37.41 3.32
567 586 2.292267 GTGAGGATAGCCCATGTTGTG 58.708 52.381 0.00 0.00 37.41 3.33
568 587 1.312815 GAGGATAGCCCATGTTGTGC 58.687 55.000 0.00 0.00 37.41 4.57
569 588 0.625316 AGGATAGCCCATGTTGTGCA 59.375 50.000 0.00 0.00 37.41 4.57
570 589 0.740737 GGATAGCCCATGTTGTGCAC 59.259 55.000 10.75 10.75 34.14 4.57
571 590 0.740737 GATAGCCCATGTTGTGCACC 59.259 55.000 15.69 0.00 0.00 5.01
572 591 0.332632 ATAGCCCATGTTGTGCACCT 59.667 50.000 15.69 3.72 0.00 4.00
573 592 0.988063 TAGCCCATGTTGTGCACCTA 59.012 50.000 15.69 2.66 0.00 3.08
574 593 0.112218 AGCCCATGTTGTGCACCTAA 59.888 50.000 15.69 0.00 0.00 2.69
575 594 0.527565 GCCCATGTTGTGCACCTAAG 59.472 55.000 15.69 0.23 0.00 2.18
576 595 1.909700 CCCATGTTGTGCACCTAAGT 58.090 50.000 15.69 0.00 0.00 2.24
577 596 2.878117 GCCCATGTTGTGCACCTAAGTA 60.878 50.000 15.69 0.00 0.00 2.24
578 597 3.009723 CCCATGTTGTGCACCTAAGTAG 58.990 50.000 15.69 0.00 0.00 2.57
579 598 3.307410 CCCATGTTGTGCACCTAAGTAGA 60.307 47.826 15.69 0.00 0.00 2.59
580 599 4.517285 CCATGTTGTGCACCTAAGTAGAT 58.483 43.478 15.69 0.00 0.00 1.98
581 600 4.572389 CCATGTTGTGCACCTAAGTAGATC 59.428 45.833 15.69 0.00 0.00 2.75
582 601 3.845178 TGTTGTGCACCTAAGTAGATCG 58.155 45.455 15.69 0.00 0.00 3.69
583 602 3.257375 TGTTGTGCACCTAAGTAGATCGT 59.743 43.478 15.69 0.00 0.00 3.73
584 603 3.503827 TGTGCACCTAAGTAGATCGTG 57.496 47.619 15.69 0.00 0.00 4.35
585 604 3.086282 TGTGCACCTAAGTAGATCGTGA 58.914 45.455 15.69 0.00 0.00 4.35
586 605 3.699538 TGTGCACCTAAGTAGATCGTGAT 59.300 43.478 15.69 0.00 0.00 3.06
587 606 4.202020 TGTGCACCTAAGTAGATCGTGATC 60.202 45.833 15.69 1.52 38.09 2.92
588 607 3.951680 TGCACCTAAGTAGATCGTGATCA 59.048 43.478 12.10 0.00 40.22 2.92
589 608 4.401202 TGCACCTAAGTAGATCGTGATCAA 59.599 41.667 12.10 0.00 40.22 2.57
590 609 5.105513 TGCACCTAAGTAGATCGTGATCAAA 60.106 40.000 12.10 0.00 40.22 2.69
591 610 5.810587 GCACCTAAGTAGATCGTGATCAAAA 59.189 40.000 12.10 0.00 40.22 2.44
592 611 6.019479 GCACCTAAGTAGATCGTGATCAAAAG 60.019 42.308 12.10 0.00 40.22 2.27
593 612 7.258441 CACCTAAGTAGATCGTGATCAAAAGA 58.742 38.462 12.10 0.00 40.22 2.52
594 613 7.759886 CACCTAAGTAGATCGTGATCAAAAGAA 59.240 37.037 12.10 0.00 40.22 2.52
595 614 7.760340 ACCTAAGTAGATCGTGATCAAAAGAAC 59.240 37.037 12.10 0.00 40.22 3.01
596 615 7.976734 CCTAAGTAGATCGTGATCAAAAGAACT 59.023 37.037 12.10 4.69 40.22 3.01
599 618 9.522804 AAGTAGATCGTGATCAAAAGAACTATC 57.477 33.333 12.10 2.64 40.22 2.08
600 619 8.687242 AGTAGATCGTGATCAAAAGAACTATCA 58.313 33.333 12.10 0.00 40.22 2.15
601 620 9.302345 GTAGATCGTGATCAAAAGAACTATCAA 57.698 33.333 12.10 0.00 40.22 2.57
602 621 8.190888 AGATCGTGATCAAAAGAACTATCAAC 57.809 34.615 12.10 0.00 40.22 3.18
603 622 7.819415 AGATCGTGATCAAAAGAACTATCAACA 59.181 33.333 12.10 0.00 40.22 3.33
604 623 7.905604 TCGTGATCAAAAGAACTATCAACAT 57.094 32.000 0.00 0.00 30.60 2.71
605 624 8.322906 TCGTGATCAAAAGAACTATCAACATT 57.677 30.769 0.00 0.00 30.60 2.71
606 625 8.443160 TCGTGATCAAAAGAACTATCAACATTC 58.557 33.333 0.00 0.00 30.60 2.67
607 626 8.229811 CGTGATCAAAAGAACTATCAACATTCA 58.770 33.333 0.00 0.00 30.60 2.57
608 627 9.552114 GTGATCAAAAGAACTATCAACATTCAG 57.448 33.333 0.00 0.00 30.60 3.02
609 628 8.239314 TGATCAAAAGAACTATCAACATTCAGC 58.761 33.333 0.00 0.00 0.00 4.26
610 629 7.750229 TCAAAAGAACTATCAACATTCAGCT 57.250 32.000 0.00 0.00 0.00 4.24
611 630 8.169977 TCAAAAGAACTATCAACATTCAGCTT 57.830 30.769 0.00 0.00 0.00 3.74
612 631 9.283768 TCAAAAGAACTATCAACATTCAGCTTA 57.716 29.630 0.00 0.00 0.00 3.09
613 632 9.897744 CAAAAGAACTATCAACATTCAGCTTAA 57.102 29.630 0.00 0.00 0.00 1.85
614 633 9.899226 AAAAGAACTATCAACATTCAGCTTAAC 57.101 29.630 0.00 0.00 0.00 2.01
615 634 8.621532 AAGAACTATCAACATTCAGCTTAACA 57.378 30.769 0.00 0.00 0.00 2.41
616 635 8.621532 AGAACTATCAACATTCAGCTTAACAA 57.378 30.769 0.00 0.00 0.00 2.83
617 636 9.066892 AGAACTATCAACATTCAGCTTAACAAA 57.933 29.630 0.00 0.00 0.00 2.83
618 637 9.677567 GAACTATCAACATTCAGCTTAACAAAA 57.322 29.630 0.00 0.00 0.00 2.44
619 638 9.463443 AACTATCAACATTCAGCTTAACAAAAC 57.537 29.630 0.00 0.00 0.00 2.43
620 639 8.850156 ACTATCAACATTCAGCTTAACAAAACT 58.150 29.630 0.00 0.00 0.00 2.66
621 640 9.683069 CTATCAACATTCAGCTTAACAAAACTT 57.317 29.630 0.00 0.00 0.00 2.66
627 646 9.515226 ACATTCAGCTTAACAAAACTTATAGGA 57.485 29.630 0.00 0.00 0.00 2.94
628 647 9.994432 CATTCAGCTTAACAAAACTTATAGGAG 57.006 33.333 0.00 0.00 0.00 3.69
629 648 8.561738 TTCAGCTTAACAAAACTTATAGGAGG 57.438 34.615 0.00 0.00 0.00 4.30
630 649 7.686434 TCAGCTTAACAAAACTTATAGGAGGT 58.314 34.615 0.00 0.00 0.00 3.85
631 650 7.822822 TCAGCTTAACAAAACTTATAGGAGGTC 59.177 37.037 0.00 0.00 0.00 3.85
632 651 7.824779 CAGCTTAACAAAACTTATAGGAGGTCT 59.175 37.037 0.00 0.00 0.00 3.85
633 652 7.824779 AGCTTAACAAAACTTATAGGAGGTCTG 59.175 37.037 0.00 0.00 0.00 3.51
634 653 7.822822 GCTTAACAAAACTTATAGGAGGTCTGA 59.177 37.037 0.00 0.00 0.00 3.27
635 654 9.892130 CTTAACAAAACTTATAGGAGGTCTGAT 57.108 33.333 0.00 0.00 0.00 2.90
636 655 9.886132 TTAACAAAACTTATAGGAGGTCTGATC 57.114 33.333 0.00 0.00 0.00 2.92
637 656 6.890293 ACAAAACTTATAGGAGGTCTGATCC 58.110 40.000 0.00 0.00 37.07 3.36
638 657 6.443849 ACAAAACTTATAGGAGGTCTGATCCA 59.556 38.462 0.49 0.00 39.47 3.41
639 658 7.127955 ACAAAACTTATAGGAGGTCTGATCCAT 59.872 37.037 0.49 0.00 39.47 3.41
640 659 6.926630 AACTTATAGGAGGTCTGATCCATC 57.073 41.667 0.49 0.00 39.47 3.51
641 660 5.337788 ACTTATAGGAGGTCTGATCCATCC 58.662 45.833 0.49 0.00 39.47 3.51
642 661 2.704190 TAGGAGGTCTGATCCATCCC 57.296 55.000 0.49 0.00 39.47 3.85
643 662 0.104725 AGGAGGTCTGATCCATCCCC 60.105 60.000 0.49 0.00 39.47 4.81
644 663 1.130678 GGAGGTCTGATCCATCCCCC 61.131 65.000 0.00 0.00 36.79 5.40
645 664 0.104725 GAGGTCTGATCCATCCCCCT 60.105 60.000 0.00 0.00 0.00 4.79
646 665 0.401105 AGGTCTGATCCATCCCCCTG 60.401 60.000 0.00 0.00 0.00 4.45
647 666 0.695803 GGTCTGATCCATCCCCCTGT 60.696 60.000 0.00 0.00 0.00 4.00
648 667 1.216990 GTCTGATCCATCCCCCTGTT 58.783 55.000 0.00 0.00 0.00 3.16
649 668 1.566231 GTCTGATCCATCCCCCTGTTT 59.434 52.381 0.00 0.00 0.00 2.83
650 669 2.024941 GTCTGATCCATCCCCCTGTTTT 60.025 50.000 0.00 0.00 0.00 2.43
651 670 3.202151 GTCTGATCCATCCCCCTGTTTTA 59.798 47.826 0.00 0.00 0.00 1.52
652 671 3.202151 TCTGATCCATCCCCCTGTTTTAC 59.798 47.826 0.00 0.00 0.00 2.01
653 672 3.197983 TGATCCATCCCCCTGTTTTACT 58.802 45.455 0.00 0.00 0.00 2.24
654 673 4.376223 TGATCCATCCCCCTGTTTTACTA 58.624 43.478 0.00 0.00 0.00 1.82
655 674 4.412199 TGATCCATCCCCCTGTTTTACTAG 59.588 45.833 0.00 0.00 0.00 2.57
656 675 3.810623 TCCATCCCCCTGTTTTACTAGT 58.189 45.455 0.00 0.00 0.00 2.57
657 676 4.962839 TCCATCCCCCTGTTTTACTAGTA 58.037 43.478 0.00 0.00 0.00 1.82
658 677 4.966805 TCCATCCCCCTGTTTTACTAGTAG 59.033 45.833 2.23 0.00 0.00 2.57
659 678 4.720273 CCATCCCCCTGTTTTACTAGTAGT 59.280 45.833 8.14 8.14 0.00 2.73
660 679 5.163332 CCATCCCCCTGTTTTACTAGTAGTC 60.163 48.000 5.96 0.00 0.00 2.59
661 680 4.356436 TCCCCCTGTTTTACTAGTAGTCC 58.644 47.826 5.96 0.00 0.00 3.85
662 681 3.131755 CCCCCTGTTTTACTAGTAGTCCG 59.868 52.174 5.96 0.00 0.00 4.79
663 682 4.019174 CCCCTGTTTTACTAGTAGTCCGA 58.981 47.826 5.96 0.00 0.00 4.55
664 683 4.097589 CCCCTGTTTTACTAGTAGTCCGAG 59.902 50.000 5.96 0.00 0.00 4.63
665 684 4.097589 CCCTGTTTTACTAGTAGTCCGAGG 59.902 50.000 5.96 6.46 0.00 4.63
666 685 4.097589 CCTGTTTTACTAGTAGTCCGAGGG 59.902 50.000 5.96 0.45 0.00 4.30
667 686 4.019174 TGTTTTACTAGTAGTCCGAGGGG 58.981 47.826 5.96 0.00 0.00 4.79
668 687 4.263905 TGTTTTACTAGTAGTCCGAGGGGA 60.264 45.833 5.96 0.00 41.08 4.81
669 688 3.853355 TTACTAGTAGTCCGAGGGGAG 57.147 52.381 5.96 0.00 44.97 4.30
670 689 1.594129 ACTAGTAGTCCGAGGGGAGT 58.406 55.000 0.00 0.00 44.97 3.85
671 690 1.212441 ACTAGTAGTCCGAGGGGAGTG 59.788 57.143 0.00 0.00 45.79 3.51
672 691 0.549950 TAGTAGTCCGAGGGGAGTGG 59.450 60.000 0.74 0.00 45.79 4.00
673 692 1.757340 GTAGTCCGAGGGGAGTGGG 60.757 68.421 0.74 0.00 45.79 4.61
674 693 3.674050 TAGTCCGAGGGGAGTGGGC 62.674 68.421 0.74 0.00 45.79 5.36
676 695 4.414956 TCCGAGGGGAGTGGGCAT 62.415 66.667 0.00 0.00 37.43 4.40
677 696 3.411517 CCGAGGGGAGTGGGCATT 61.412 66.667 0.00 0.00 34.06 3.56
678 697 2.070039 CCGAGGGGAGTGGGCATTA 61.070 63.158 0.00 0.00 34.06 1.90
679 698 1.632018 CCGAGGGGAGTGGGCATTAA 61.632 60.000 0.00 0.00 34.06 1.40
680 699 0.254747 CGAGGGGAGTGGGCATTAAA 59.745 55.000 0.00 0.00 0.00 1.52
681 700 1.747206 CGAGGGGAGTGGGCATTAAAG 60.747 57.143 0.00 0.00 0.00 1.85
682 701 1.564348 GAGGGGAGTGGGCATTAAAGA 59.436 52.381 0.00 0.00 0.00 2.52
683 702 2.000048 AGGGGAGTGGGCATTAAAGAA 59.000 47.619 0.00 0.00 0.00 2.52
707 726 0.646895 GCATATTTGGCTGTTTGCGC 59.353 50.000 0.00 0.00 44.05 6.09
714 733 2.327940 GCTGTTTGCGCAGTTCGT 59.672 55.556 11.31 0.00 41.07 3.85
715 734 1.567537 GCTGTTTGCGCAGTTCGTA 59.432 52.632 11.31 0.00 41.07 3.43
722 741 0.388778 TGCGCAGTTCGTAATTCGGA 60.389 50.000 5.66 0.00 41.07 4.55
724 743 1.625616 CGCAGTTCGTAATTCGGAGT 58.374 50.000 0.00 0.00 40.32 3.85
731 750 4.095483 AGTTCGTAATTCGGAGTGATACGT 59.905 41.667 0.00 0.00 40.32 3.57
732 751 4.201208 TCGTAATTCGGAGTGATACGTC 57.799 45.455 0.00 0.00 40.32 4.34
735 754 2.752144 ATTCGGAGTGATACGTCGAC 57.248 50.000 5.18 5.18 30.34 4.20
784 803 1.442520 CACGCAAAATGGACGGCAG 60.443 57.895 0.00 0.00 0.00 4.85
796 815 1.544246 GGACGGCAGGCAATTTTTAGT 59.456 47.619 0.00 0.00 0.00 2.24
845 864 2.459060 TACCCGCACGAATCTCAAAA 57.541 45.000 0.00 0.00 0.00 2.44
859 878 4.994471 AAAACGACGACCCCCGGC 62.994 66.667 0.00 0.00 44.56 6.13
879 930 1.841556 TGGCGGTCTCCACTCCTTT 60.842 57.895 0.00 0.00 0.00 3.11
880 931 1.376037 GGCGGTCTCCACTCCTTTG 60.376 63.158 0.00 0.00 0.00 2.77
881 932 1.371558 GCGGTCTCCACTCCTTTGT 59.628 57.895 0.00 0.00 0.00 2.83
895 946 0.378962 CTTTGTGGAAAACCGCGACA 59.621 50.000 8.23 0.00 0.00 4.35
965 1016 4.351054 GCCACCACCCACCTCCTG 62.351 72.222 0.00 0.00 0.00 3.86
966 1017 2.854032 CCACCACCCACCTCCTGT 60.854 66.667 0.00 0.00 0.00 4.00
967 1018 2.750350 CACCACCCACCTCCTGTC 59.250 66.667 0.00 0.00 0.00 3.51
971 1022 4.677151 ACCCACCTCCTGTCCCCC 62.677 72.222 0.00 0.00 0.00 5.40
972 1023 4.354943 CCCACCTCCTGTCCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
973 1024 2.689034 CCACCTCCTGTCCCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
1234 1289 2.360852 TCGTCTCCCAGGTCGACC 60.361 66.667 27.67 27.67 0.00 4.79
1235 1290 3.450115 CGTCTCCCAGGTCGACCC 61.450 72.222 30.82 12.61 36.42 4.46
1236 1291 3.075641 GTCTCCCAGGTCGACCCC 61.076 72.222 30.82 7.57 36.42 4.95
1237 1292 3.273654 TCTCCCAGGTCGACCCCT 61.274 66.667 30.82 11.13 36.42 4.79
1377 1442 1.134901 CGATCCGATCCGATCCGAC 59.865 63.158 15.61 0.00 36.13 4.79
1460 1525 9.601810 TCATATTCCTGGATAATACTGTACTGT 57.398 33.333 10.46 10.46 0.00 3.55
1473 1538 1.814394 TGTACTGTACTGTACTGGCCG 59.186 52.381 30.96 9.01 42.22 6.13
1477 1542 1.252904 TGTACTGTACTGGCCGACCC 61.253 60.000 17.98 0.00 33.59 4.46
1501 1566 2.886382 CCGATTTGGGGCACAGAAT 58.114 52.632 0.00 0.00 0.00 2.40
1504 1569 2.028203 CCGATTTGGGGCACAGAATTTT 60.028 45.455 0.00 0.00 0.00 1.82
1506 1571 3.679502 CGATTTGGGGCACAGAATTTTTC 59.320 43.478 0.00 0.00 0.00 2.29
1507 1572 3.483808 TTTGGGGCACAGAATTTTTCC 57.516 42.857 0.00 0.00 0.00 3.13
1508 1573 1.347062 TGGGGCACAGAATTTTTCCC 58.653 50.000 0.00 0.00 0.00 3.97
1509 1574 1.132881 TGGGGCACAGAATTTTTCCCT 60.133 47.619 0.00 0.00 34.28 4.20
1510 1575 2.110899 TGGGGCACAGAATTTTTCCCTA 59.889 45.455 0.00 0.00 34.28 3.53
1511 1576 2.760650 GGGGCACAGAATTTTTCCCTAG 59.239 50.000 0.00 0.00 34.28 3.02
1515 1580 3.511540 GCACAGAATTTTTCCCTAGCCTT 59.488 43.478 0.00 0.00 0.00 4.35
1558 1634 0.249699 TGGTTGCGTACTGGTGTCTG 60.250 55.000 0.00 0.00 0.00 3.51
1559 1635 0.249741 GGTTGCGTACTGGTGTCTGT 60.250 55.000 0.00 0.00 0.00 3.41
1560 1636 1.578583 GTTGCGTACTGGTGTCTGTT 58.421 50.000 0.00 0.00 0.00 3.16
1561 1637 1.525619 GTTGCGTACTGGTGTCTGTTC 59.474 52.381 0.00 0.00 0.00 3.18
1562 1638 0.747852 TGCGTACTGGTGTCTGTTCA 59.252 50.000 0.00 0.00 0.00 3.18
1621 1697 3.066760 CCTGACCGGAAATCTTTTATGGC 59.933 47.826 9.46 0.00 33.16 4.40
1631 1713 0.373716 CTTTTATGGCGTGCCTCGTC 59.626 55.000 12.84 0.00 45.13 4.20
1632 1714 1.022451 TTTTATGGCGTGCCTCGTCC 61.022 55.000 12.84 3.56 44.19 4.79
1773 1855 8.638565 CAACTGAAACTTTAGTCACTTGTTTTG 58.361 33.333 5.23 4.93 32.01 2.44
1774 1856 7.312899 ACTGAAACTTTAGTCACTTGTTTTGG 58.687 34.615 5.23 4.69 32.01 3.28
1775 1857 6.096695 TGAAACTTTAGTCACTTGTTTTGGC 58.903 36.000 5.23 0.00 32.01 4.52
1776 1858 4.649088 ACTTTAGTCACTTGTTTTGGCC 57.351 40.909 0.00 0.00 0.00 5.36
1777 1859 3.383505 ACTTTAGTCACTTGTTTTGGCCC 59.616 43.478 0.00 0.00 0.00 5.80
1778 1860 3.306472 TTAGTCACTTGTTTTGGCCCT 57.694 42.857 0.00 0.00 0.00 5.19
1779 1861 1.402787 AGTCACTTGTTTTGGCCCTG 58.597 50.000 0.00 0.00 0.00 4.45
1780 1862 0.389025 GTCACTTGTTTTGGCCCTGG 59.611 55.000 0.00 0.00 0.00 4.45
1781 1863 0.260230 TCACTTGTTTTGGCCCTGGA 59.740 50.000 0.00 0.00 0.00 3.86
1782 1864 1.118838 CACTTGTTTTGGCCCTGGAA 58.881 50.000 0.00 0.00 0.00 3.53
1783 1865 1.693606 CACTTGTTTTGGCCCTGGAAT 59.306 47.619 0.00 0.00 0.00 3.01
1784 1866 2.104622 CACTTGTTTTGGCCCTGGAATT 59.895 45.455 0.00 0.00 0.00 2.17
1785 1867 2.104622 ACTTGTTTTGGCCCTGGAATTG 59.895 45.455 0.00 0.00 0.00 2.32
1786 1868 1.055040 TGTTTTGGCCCTGGAATTGG 58.945 50.000 0.00 0.00 0.00 3.16
1787 1869 1.055849 GTTTTGGCCCTGGAATTGGT 58.944 50.000 0.00 0.00 0.00 3.67
1809 1892 6.153340 TGGTTAGTACCTTACTGTATGTGGAC 59.847 42.308 8.38 3.87 45.27 4.02
1814 1897 5.818678 ACCTTACTGTATGTGGACTGAAA 57.181 39.130 8.38 0.00 0.00 2.69
1816 1899 4.625742 CCTTACTGTATGTGGACTGAAACG 59.374 45.833 0.00 0.00 0.00 3.60
1819 1902 4.448210 ACTGTATGTGGACTGAAACGTTT 58.552 39.130 14.57 14.57 0.00 3.60
1829 1912 4.260253 GGACTGAAACGTTTGTCTCTTGTC 60.260 45.833 20.10 14.70 0.00 3.18
1833 1916 4.328983 TGAAACGTTTGTCTCTTGTCTGTC 59.671 41.667 20.10 0.00 0.00 3.51
1857 1940 5.278660 CCTTGGAATGGATTAGTAATGCTGC 60.279 44.000 14.57 2.75 31.60 5.25
1889 1972 7.634671 TGTCGGTTAAGTTGTAGATAGATCA 57.365 36.000 0.00 0.00 0.00 2.92
1953 2036 2.175931 TGTTCTCCTGTTTTTGCCCCTA 59.824 45.455 0.00 0.00 0.00 3.53
2016 2099 5.016173 CAGACTATATCCAGAAGAGGGGAG 58.984 50.000 0.00 0.00 36.45 4.30
2061 2144 4.997395 TGCTTCTTGTCAGACACTAATTCC 59.003 41.667 1.52 0.00 0.00 3.01
2113 2196 9.774413 AATCTTTCATTCTTTCTGAAGCAAAAT 57.226 25.926 0.00 0.00 38.18 1.82
2114 2197 9.774413 ATCTTTCATTCTTTCTGAAGCAAAATT 57.226 25.926 0.00 0.00 38.18 1.82
2117 2201 8.506140 TTCATTCTTTCTGAAGCAAAATTACG 57.494 30.769 0.00 0.00 38.18 3.18
2144 2228 3.719268 TGAGCCCTTTATGCTTTCAGA 57.281 42.857 0.00 0.00 39.69 3.27
2146 2230 3.949754 TGAGCCCTTTATGCTTTCAGATG 59.050 43.478 0.00 0.00 39.69 2.90
2154 2238 7.201884 CCCTTTATGCTTTCAGATGTCATCATT 60.202 37.037 15.20 0.00 34.06 2.57
2159 2243 5.521372 TGCTTTCAGATGTCATCATTACTCG 59.479 40.000 15.20 0.00 34.06 4.18
2275 2359 2.034558 ACCTGTTCAAAATCTGTTGCGG 59.965 45.455 0.00 0.00 0.00 5.69
2282 2366 1.826385 AAATCTGTTGCGGAAGGGAG 58.174 50.000 0.00 0.00 0.00 4.30
2442 2526 1.134220 CGTACTGGGGCATGTATGGTT 60.134 52.381 0.00 0.00 0.00 3.67
2589 2673 4.320935 CCCGATTTACCTGTTTGGAAACTG 60.321 45.833 4.02 3.45 39.59 3.16
2787 2871 2.753966 CCCGAAGACAGCATTGCGG 61.754 63.158 7.26 7.26 38.54 5.69
2883 2967 1.202927 AGTGACAAACCACCATCTGGG 60.203 52.381 0.54 0.00 45.78 4.45
2917 3001 4.774660 ATGCTGTCTGATGAGAAGGATT 57.225 40.909 0.00 0.00 0.00 3.01
3127 3211 1.000396 CCTTGGGAAGGCTGGGAAG 60.000 63.158 0.00 0.00 42.78 3.46
3229 3313 1.993948 GGTACTCCCCGGAAAGGCT 60.994 63.158 0.73 0.00 39.21 4.58
3252 3336 2.760650 GGAAAGCAATAACCTGAAGGGG 59.239 50.000 0.56 0.00 40.27 4.79
3458 3542 0.980423 AGGTCAGTCTTCCAGAAGCC 59.020 55.000 2.38 0.00 38.28 4.35
3459 3543 0.035915 GGTCAGTCTTCCAGAAGCCC 60.036 60.000 2.38 0.00 38.28 5.19
3601 3695 5.258456 TGTCTATAACGGTCTCCATCAAC 57.742 43.478 0.00 0.00 0.00 3.18
3665 3759 0.182775 AGCAACGGGTTCCAAGTCTT 59.817 50.000 0.00 0.00 0.00 3.01
3815 3919 2.099405 CCAGTCACAGGGTGTTTGTTT 58.901 47.619 0.00 0.00 34.79 2.83
3821 3925 5.533528 AGTCACAGGGTGTTTGTTTTATACC 59.466 40.000 0.00 0.00 34.79 2.73
3877 3987 4.141233 ACAAAGGCTTGATGTGCTTTTT 57.859 36.364 0.00 0.00 37.57 1.94
3965 4201 7.590322 GCTCAGCATCAGTTAACATGATTTATG 59.410 37.037 8.61 11.02 42.68 1.90
3993 4229 1.001048 CAGTCGAAGGTCACGTTGGTA 60.001 52.381 0.00 0.00 0.00 3.25
3996 4232 2.473984 GTCGAAGGTCACGTTGGTAAAG 59.526 50.000 0.00 0.00 0.00 1.85
4006 4247 6.037830 GGTCACGTTGGTAAAGTGCAATATAT 59.962 38.462 0.00 0.00 35.97 0.86
4064 4305 5.726980 TTCTAGAAAAGCCATGCAAATGT 57.273 34.783 1.68 0.00 0.00 2.71
4104 4346 3.197549 CCCCCATTCCGAAATGTTTGAAT 59.802 43.478 0.00 0.00 40.63 2.57
4126 4368 8.846211 TGAATTTTTAACTTTGTCCTAGGTCAG 58.154 33.333 9.08 1.13 0.00 3.51
4143 4385 8.722394 CCTAGGTCAGACTTTTTAAGATTTGAC 58.278 37.037 0.00 0.00 36.68 3.18
4150 4392 7.862873 CAGACTTTTTAAGATTTGACCAAGTCC 59.137 37.037 0.00 0.00 39.73 3.85
4201 4443 9.840427 AACACCAAATTAGTTTCATTAGATTCG 57.160 29.630 0.00 0.00 0.00 3.34
4263 4505 4.910195 ACTTTGAATCTGTGGCTGATGTA 58.090 39.130 0.00 0.00 0.00 2.29
4264 4506 4.940046 ACTTTGAATCTGTGGCTGATGTAG 59.060 41.667 0.00 0.00 0.00 2.74
4266 4508 4.128925 TGAATCTGTGGCTGATGTAGAC 57.871 45.455 0.00 0.00 33.80 2.59
4267 4509 2.879002 ATCTGTGGCTGATGTAGACG 57.121 50.000 0.00 0.00 37.17 4.18
4268 4510 0.173481 TCTGTGGCTGATGTAGACGC 59.827 55.000 0.00 0.00 45.55 5.19
4269 4511 0.174389 CTGTGGCTGATGTAGACGCT 59.826 55.000 0.00 0.00 45.55 5.07
4270 4512 0.608130 TGTGGCTGATGTAGACGCTT 59.392 50.000 0.00 0.00 45.55 4.68
4271 4513 1.281899 GTGGCTGATGTAGACGCTTC 58.718 55.000 0.00 0.00 41.91 3.86
4272 4514 0.894835 TGGCTGATGTAGACGCTTCA 59.105 50.000 0.00 0.00 37.17 3.02
4273 4515 1.134995 TGGCTGATGTAGACGCTTCAG 60.135 52.381 0.00 9.81 41.06 3.02
4274 4516 1.134965 GGCTGATGTAGACGCTTCAGT 60.135 52.381 13.33 0.00 40.57 3.41
4275 4517 1.923204 GCTGATGTAGACGCTTCAGTG 59.077 52.381 13.33 0.00 40.57 3.66
4325 4567 4.724074 ATATCTAACCGGTGAACGTTCA 57.276 40.909 26.53 26.53 42.24 3.18
4366 4608 0.604511 ACGACCTAAAAGCCGTTGGG 60.605 55.000 0.00 0.00 35.35 4.12
4394 4636 6.314018 GTGATCAAACGCATGACATTTAAGA 58.686 36.000 0.00 0.00 30.82 2.10
4400 4642 7.918033 TCAAACGCATGACATTTAAGAAAGAAA 59.082 29.630 0.00 0.00 0.00 2.52
4401 4643 8.538856 CAAACGCATGACATTTAAGAAAGAAAA 58.461 29.630 0.00 0.00 0.00 2.29
4458 4709 5.476599 CCATACATGACAAGTCCCTCAAAAA 59.523 40.000 0.00 0.00 0.00 1.94
4463 4714 3.703556 TGACAAGTCCCTCAAAAATGCAA 59.296 39.130 0.00 0.00 0.00 4.08
4464 4715 4.344679 TGACAAGTCCCTCAAAAATGCAAT 59.655 37.500 0.00 0.00 0.00 3.56
4487 4738 6.964741 TGCAATTTTAGTTATGTTGGCATG 57.035 33.333 0.00 0.00 36.58 4.06
4492 4743 4.448537 TTAGTTATGTTGGCATGGCAAC 57.551 40.909 42.38 42.38 36.58 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.065031 CACGCGCTTTTGATTTCGGG 61.065 55.000 5.73 0.00 40.08 5.14
4 5 0.110419 TCACGCGCTTTTGATTTCGG 60.110 50.000 5.73 0.00 0.00 4.30
5 6 1.241744 CTCACGCGCTTTTGATTTCG 58.758 50.000 5.73 0.00 0.00 3.46
6 7 2.316119 ACTCACGCGCTTTTGATTTC 57.684 45.000 5.73 0.00 0.00 2.17
7 8 4.419522 AATACTCACGCGCTTTTGATTT 57.580 36.364 5.73 0.00 0.00 2.17
8 9 4.419522 AAATACTCACGCGCTTTTGATT 57.580 36.364 5.73 0.00 0.00 2.57
9 10 4.154195 AGAAAATACTCACGCGCTTTTGAT 59.846 37.500 5.73 0.00 0.00 2.57
10 11 3.496884 AGAAAATACTCACGCGCTTTTGA 59.503 39.130 5.73 0.46 0.00 2.69
12 13 3.120304 GGAGAAAATACTCACGCGCTTTT 60.120 43.478 5.73 3.11 38.51 2.27
14 15 2.000447 GGAGAAAATACTCACGCGCTT 59.000 47.619 5.73 0.00 38.51 4.68
15 16 1.641577 GGAGAAAATACTCACGCGCT 58.358 50.000 5.73 0.00 38.51 5.92
16 17 0.651031 GGGAGAAAATACTCACGCGC 59.349 55.000 5.73 0.00 38.51 6.86
20 21 2.396590 TGCCGGGAGAAAATACTCAC 57.603 50.000 2.18 0.00 38.51 3.51
21 22 2.483013 CGATGCCGGGAGAAAATACTCA 60.483 50.000 2.18 0.00 38.51 3.41
22 23 2.135933 CGATGCCGGGAGAAAATACTC 58.864 52.381 2.18 0.00 36.31 2.59
23 24 2.240493 CGATGCCGGGAGAAAATACT 57.760 50.000 2.18 0.00 0.00 2.12
44 45 4.832608 GACGTGGGGATGGGACGC 62.833 72.222 0.00 0.00 36.56 5.19
45 46 4.508128 CGACGTGGGGATGGGACG 62.508 72.222 0.00 0.00 39.03 4.79
46 47 2.573609 CTTCGACGTGGGGATGGGAC 62.574 65.000 0.00 0.00 0.00 4.46
47 48 2.284039 TTCGACGTGGGGATGGGA 60.284 61.111 0.00 0.00 0.00 4.37
48 49 1.686325 ATCTTCGACGTGGGGATGGG 61.686 60.000 0.00 0.00 0.00 4.00
49 50 0.249489 GATCTTCGACGTGGGGATGG 60.249 60.000 0.00 0.00 0.00 3.51
50 51 0.747255 AGATCTTCGACGTGGGGATG 59.253 55.000 0.00 0.00 0.00 3.51
51 52 1.955080 GTAGATCTTCGACGTGGGGAT 59.045 52.381 0.00 0.00 0.00 3.85
52 53 1.064906 AGTAGATCTTCGACGTGGGGA 60.065 52.381 0.00 0.00 0.00 4.81
53 54 1.334243 GAGTAGATCTTCGACGTGGGG 59.666 57.143 0.00 0.00 0.00 4.96
54 55 1.003759 CGAGTAGATCTTCGACGTGGG 60.004 57.143 10.67 0.00 0.00 4.61
55 56 1.003759 CCGAGTAGATCTTCGACGTGG 60.004 57.143 16.58 5.98 0.00 4.94
56 57 1.003759 CCCGAGTAGATCTTCGACGTG 60.004 57.143 16.58 4.71 0.00 4.49
57 58 1.297664 CCCGAGTAGATCTTCGACGT 58.702 55.000 16.58 0.00 0.00 4.34
58 59 1.261089 GACCCGAGTAGATCTTCGACG 59.739 57.143 16.58 14.13 0.00 5.12
59 60 2.288458 CAGACCCGAGTAGATCTTCGAC 59.712 54.545 16.58 2.36 0.00 4.20
60 61 2.562635 CAGACCCGAGTAGATCTTCGA 58.437 52.381 16.58 0.00 0.00 3.71
61 62 1.002251 GCAGACCCGAGTAGATCTTCG 60.002 57.143 0.00 5.05 0.00 3.79
62 63 2.292292 GAGCAGACCCGAGTAGATCTTC 59.708 54.545 0.00 0.00 0.00 2.87
63 64 2.303175 GAGCAGACCCGAGTAGATCTT 58.697 52.381 0.00 0.00 0.00 2.40
64 65 1.477923 GGAGCAGACCCGAGTAGATCT 60.478 57.143 0.00 0.00 0.00 2.75
65 66 0.955905 GGAGCAGACCCGAGTAGATC 59.044 60.000 0.00 0.00 0.00 2.75
66 67 0.468400 GGGAGCAGACCCGAGTAGAT 60.468 60.000 0.00 0.00 40.49 1.98
67 68 1.076923 GGGAGCAGACCCGAGTAGA 60.077 63.158 0.00 0.00 40.49 2.59
68 69 3.527641 GGGAGCAGACCCGAGTAG 58.472 66.667 0.00 0.00 40.49 2.57
83 84 1.290324 CACTCATCTATCCGCGGGG 59.710 63.158 27.83 13.31 0.00 5.73
84 85 1.290324 CCACTCATCTATCCGCGGG 59.710 63.158 27.83 9.82 0.00 6.13
85 86 1.290324 CCCACTCATCTATCCGCGG 59.710 63.158 22.12 22.12 0.00 6.46
86 87 1.290324 CCCCACTCATCTATCCGCG 59.710 63.158 0.00 0.00 0.00 6.46
87 88 0.832135 TCCCCCACTCATCTATCCGC 60.832 60.000 0.00 0.00 0.00 5.54
88 89 1.261480 CTCCCCCACTCATCTATCCG 58.739 60.000 0.00 0.00 0.00 4.18
89 90 1.150135 TCCTCCCCCACTCATCTATCC 59.850 57.143 0.00 0.00 0.00 2.59
90 91 2.534990 CTCCTCCCCCACTCATCTATC 58.465 57.143 0.00 0.00 0.00 2.08
91 92 1.150986 CCTCCTCCCCCACTCATCTAT 59.849 57.143 0.00 0.00 0.00 1.98
92 93 0.563173 CCTCCTCCCCCACTCATCTA 59.437 60.000 0.00 0.00 0.00 1.98
93 94 1.316266 CCTCCTCCCCCACTCATCT 59.684 63.158 0.00 0.00 0.00 2.90
94 95 1.768077 CCCTCCTCCCCCACTCATC 60.768 68.421 0.00 0.00 0.00 2.92
95 96 2.374342 CCCTCCTCCCCCACTCAT 59.626 66.667 0.00 0.00 0.00 2.90
96 97 3.208592 ACCCTCCTCCCCCACTCA 61.209 66.667 0.00 0.00 0.00 3.41
97 98 2.689034 CACCCTCCTCCCCCACTC 60.689 72.222 0.00 0.00 0.00 3.51
99 100 3.635869 TAGCACCCTCCTCCCCCAC 62.636 68.421 0.00 0.00 0.00 4.61
100 101 3.289211 TAGCACCCTCCTCCCCCA 61.289 66.667 0.00 0.00 0.00 4.96
101 102 1.957822 TAGTAGCACCCTCCTCCCCC 61.958 65.000 0.00 0.00 0.00 5.40
102 103 0.759812 GTAGTAGCACCCTCCTCCCC 60.760 65.000 0.00 0.00 0.00 4.81
103 104 0.032416 TGTAGTAGCACCCTCCTCCC 60.032 60.000 0.00 0.00 0.00 4.30
104 105 1.861982 TTGTAGTAGCACCCTCCTCC 58.138 55.000 0.00 0.00 0.00 4.30
105 106 3.007614 TGTTTTGTAGTAGCACCCTCCTC 59.992 47.826 0.00 0.00 0.00 3.71
106 107 2.976882 TGTTTTGTAGTAGCACCCTCCT 59.023 45.455 0.00 0.00 0.00 3.69
107 108 3.412237 TGTTTTGTAGTAGCACCCTCC 57.588 47.619 0.00 0.00 0.00 4.30
108 109 4.324267 ACATGTTTTGTAGTAGCACCCTC 58.676 43.478 0.00 0.00 36.57 4.30
109 110 4.202419 TGACATGTTTTGTAGTAGCACCCT 60.202 41.667 0.00 0.00 39.18 4.34
110 111 4.069304 TGACATGTTTTGTAGTAGCACCC 58.931 43.478 0.00 0.00 39.18 4.61
111 112 5.880054 ATGACATGTTTTGTAGTAGCACC 57.120 39.130 0.00 0.00 39.18 5.01
112 113 6.668323 ACAATGACATGTTTTGTAGTAGCAC 58.332 36.000 20.35 0.00 39.18 4.40
113 114 6.875948 ACAATGACATGTTTTGTAGTAGCA 57.124 33.333 20.35 3.27 39.18 3.49
114 115 7.584987 AGAACAATGACATGTTTTGTAGTAGC 58.415 34.615 21.41 12.43 43.31 3.58
115 116 9.950680 AAAGAACAATGACATGTTTTGTAGTAG 57.049 29.630 21.41 2.63 43.31 2.57
212 214 6.995091 GTGATTAGTTTGAGAAGCCTATGGAT 59.005 38.462 0.00 0.00 0.00 3.41
223 225 4.556233 CGTCACAGGTGATTAGTTTGAGA 58.444 43.478 5.29 0.00 42.18 3.27
231 233 5.160607 AGATTTTCCGTCACAGGTGATTA 57.839 39.130 5.29 0.00 42.18 1.75
236 238 1.939838 GCGAGATTTTCCGTCACAGGT 60.940 52.381 0.00 0.00 0.00 4.00
238 240 0.721718 GGCGAGATTTTCCGTCACAG 59.278 55.000 0.00 0.00 0.00 3.66
245 247 1.379642 CCAGGCTGGCGAGATTTTCC 61.380 60.000 22.68 0.00 0.00 3.13
273 282 8.556213 ACGTTGTAATAAGGAAGCAAATTAGA 57.444 30.769 0.00 0.00 0.00 2.10
276 285 8.138712 TCAAACGTTGTAATAAGGAAGCAAATT 58.861 29.630 0.00 0.00 0.00 1.82
319 328 6.649155 TGATTGCTACTTTATGGCTTACAGA 58.351 36.000 1.07 0.00 35.37 3.41
320 329 6.925610 TGATTGCTACTTTATGGCTTACAG 57.074 37.500 0.00 0.00 35.37 2.74
321 330 7.053498 TGATGATTGCTACTTTATGGCTTACA 58.947 34.615 0.00 0.00 35.37 2.41
322 331 7.496529 TGATGATTGCTACTTTATGGCTTAC 57.503 36.000 0.00 0.00 35.37 2.34
323 332 8.405531 GTTTGATGATTGCTACTTTATGGCTTA 58.594 33.333 0.00 0.00 35.37 3.09
328 337 6.412943 CAGCGTTTGATGATTGCTACTTTATG 59.587 38.462 0.00 0.00 33.90 1.90
356 365 0.106894 GAAGGAGGACAATAGGCGGG 59.893 60.000 0.00 0.00 0.00 6.13
362 371 6.213397 TGACTCAATGAAGAAGGAGGACAATA 59.787 38.462 0.00 0.00 0.00 1.90
363 372 5.013495 TGACTCAATGAAGAAGGAGGACAAT 59.987 40.000 0.00 0.00 0.00 2.71
383 402 7.123997 ACTCTGACAATATGAGAGTGATTGACT 59.876 37.037 0.00 0.00 43.83 3.41
394 413 9.208022 TCTTGTTGTTAACTCTGACAATATGAG 57.792 33.333 7.22 0.00 37.98 2.90
395 414 8.988934 GTCTTGTTGTTAACTCTGACAATATGA 58.011 33.333 7.22 4.75 37.98 2.15
433 452 4.040217 TGGCTTATTCCTTGCACAAAATGT 59.960 37.500 0.00 0.00 0.00 2.71
435 454 4.888326 TGGCTTATTCCTTGCACAAAAT 57.112 36.364 0.00 0.00 0.00 1.82
453 472 1.134995 GCATTGGCTCTAAGGTTTGGC 60.135 52.381 0.00 0.00 36.96 4.52
454 473 2.947448 GCATTGGCTCTAAGGTTTGG 57.053 50.000 0.00 0.00 36.96 3.28
466 485 1.663695 TTAGCGGTAGAAGCATTGGC 58.336 50.000 0.00 0.00 41.61 4.52
467 486 4.377021 TGTATTAGCGGTAGAAGCATTGG 58.623 43.478 0.00 0.00 37.01 3.16
468 487 5.696270 TGATGTATTAGCGGTAGAAGCATTG 59.304 40.000 0.00 0.00 37.01 2.82
469 488 5.853936 TGATGTATTAGCGGTAGAAGCATT 58.146 37.500 0.00 0.00 37.01 3.56
470 489 5.468540 TGATGTATTAGCGGTAGAAGCAT 57.531 39.130 0.00 0.00 37.01 3.79
471 490 4.796290 GCTGATGTATTAGCGGTAGAAGCA 60.796 45.833 0.00 0.00 37.01 3.91
472 491 3.675698 GCTGATGTATTAGCGGTAGAAGC 59.324 47.826 0.00 0.00 29.59 3.86
473 492 4.681942 GTGCTGATGTATTAGCGGTAGAAG 59.318 45.833 4.49 0.00 41.77 2.85
474 493 4.098807 TGTGCTGATGTATTAGCGGTAGAA 59.901 41.667 4.49 0.00 41.77 2.10
475 494 3.634910 TGTGCTGATGTATTAGCGGTAGA 59.365 43.478 4.49 0.00 41.77 2.59
476 495 3.736252 GTGTGCTGATGTATTAGCGGTAG 59.264 47.826 4.49 0.00 41.77 3.18
477 496 3.491964 GGTGTGCTGATGTATTAGCGGTA 60.492 47.826 4.49 0.00 41.77 4.02
478 497 2.550978 GTGTGCTGATGTATTAGCGGT 58.449 47.619 4.49 0.00 41.77 5.68
479 498 1.867233 GGTGTGCTGATGTATTAGCGG 59.133 52.381 4.49 0.00 41.77 5.52
480 499 2.549926 TGGTGTGCTGATGTATTAGCG 58.450 47.619 4.49 0.00 41.77 4.26
481 500 4.576053 TGATTGGTGTGCTGATGTATTAGC 59.424 41.667 2.03 2.03 39.58 3.09
482 501 6.682423 TTGATTGGTGTGCTGATGTATTAG 57.318 37.500 0.00 0.00 0.00 1.73
483 502 6.827762 TGATTGATTGGTGTGCTGATGTATTA 59.172 34.615 0.00 0.00 0.00 0.98
484 503 5.653330 TGATTGATTGGTGTGCTGATGTATT 59.347 36.000 0.00 0.00 0.00 1.89
485 504 5.195185 TGATTGATTGGTGTGCTGATGTAT 58.805 37.500 0.00 0.00 0.00 2.29
486 505 4.587891 TGATTGATTGGTGTGCTGATGTA 58.412 39.130 0.00 0.00 0.00 2.29
487 506 3.423749 TGATTGATTGGTGTGCTGATGT 58.576 40.909 0.00 0.00 0.00 3.06
488 507 4.499188 GGATGATTGATTGGTGTGCTGATG 60.499 45.833 0.00 0.00 0.00 3.07
489 508 3.635373 GGATGATTGATTGGTGTGCTGAT 59.365 43.478 0.00 0.00 0.00 2.90
490 509 3.018856 GGATGATTGATTGGTGTGCTGA 58.981 45.455 0.00 0.00 0.00 4.26
491 510 2.756207 TGGATGATTGATTGGTGTGCTG 59.244 45.455 0.00 0.00 0.00 4.41
492 511 3.021695 CTGGATGATTGATTGGTGTGCT 58.978 45.455 0.00 0.00 0.00 4.40
493 512 2.756760 ACTGGATGATTGATTGGTGTGC 59.243 45.455 0.00 0.00 0.00 4.57
494 513 5.395682 AAACTGGATGATTGATTGGTGTG 57.604 39.130 0.00 0.00 0.00 3.82
495 514 5.539574 TGAAAACTGGATGATTGATTGGTGT 59.460 36.000 0.00 0.00 0.00 4.16
496 515 5.865552 GTGAAAACTGGATGATTGATTGGTG 59.134 40.000 0.00 0.00 0.00 4.17
497 516 5.047092 GGTGAAAACTGGATGATTGATTGGT 60.047 40.000 0.00 0.00 0.00 3.67
498 517 5.047164 TGGTGAAAACTGGATGATTGATTGG 60.047 40.000 0.00 0.00 0.00 3.16
499 518 6.028146 TGGTGAAAACTGGATGATTGATTG 57.972 37.500 0.00 0.00 0.00 2.67
500 519 6.041865 TGTTGGTGAAAACTGGATGATTGATT 59.958 34.615 0.00 0.00 0.00 2.57
501 520 5.539574 TGTTGGTGAAAACTGGATGATTGAT 59.460 36.000 0.00 0.00 0.00 2.57
502 521 4.892345 TGTTGGTGAAAACTGGATGATTGA 59.108 37.500 0.00 0.00 0.00 2.57
503 522 5.199024 TGTTGGTGAAAACTGGATGATTG 57.801 39.130 0.00 0.00 0.00 2.67
504 523 4.895297 ACTGTTGGTGAAAACTGGATGATT 59.105 37.500 0.00 0.00 34.37 2.57
505 524 4.473444 ACTGTTGGTGAAAACTGGATGAT 58.527 39.130 0.00 0.00 34.37 2.45
506 525 3.897239 ACTGTTGGTGAAAACTGGATGA 58.103 40.909 0.00 0.00 34.37 2.92
518 537 5.949735 ACAAAGTAAAGTTCACTGTTGGTG 58.050 37.500 6.23 0.00 46.60 4.17
519 538 5.708230 TGACAAAGTAAAGTTCACTGTTGGT 59.292 36.000 6.23 0.00 0.00 3.67
520 539 6.189677 TGACAAAGTAAAGTTCACTGTTGG 57.810 37.500 6.23 0.00 0.00 3.77
521 540 7.641411 CAGATGACAAAGTAAAGTTCACTGTTG 59.359 37.037 0.00 0.00 0.00 3.33
522 541 7.336931 ACAGATGACAAAGTAAAGTTCACTGTT 59.663 33.333 0.00 0.00 0.00 3.16
523 542 6.823689 ACAGATGACAAAGTAAAGTTCACTGT 59.176 34.615 0.00 0.00 0.00 3.55
524 543 7.011389 TCACAGATGACAAAGTAAAGTTCACTG 59.989 37.037 0.00 0.00 0.00 3.66
525 544 7.047891 TCACAGATGACAAAGTAAAGTTCACT 58.952 34.615 0.00 0.00 0.00 3.41
526 545 7.246674 TCACAGATGACAAAGTAAAGTTCAC 57.753 36.000 0.00 0.00 0.00 3.18
527 546 6.483307 CCTCACAGATGACAAAGTAAAGTTCA 59.517 38.462 0.00 0.00 0.00 3.18
528 547 6.706270 TCCTCACAGATGACAAAGTAAAGTTC 59.294 38.462 0.00 0.00 0.00 3.01
529 548 6.591935 TCCTCACAGATGACAAAGTAAAGTT 58.408 36.000 0.00 0.00 0.00 2.66
530 549 6.174720 TCCTCACAGATGACAAAGTAAAGT 57.825 37.500 0.00 0.00 0.00 2.66
531 550 7.010923 GCTATCCTCACAGATGACAAAGTAAAG 59.989 40.741 0.00 0.00 0.00 1.85
532 551 6.818644 GCTATCCTCACAGATGACAAAGTAAA 59.181 38.462 0.00 0.00 0.00 2.01
533 552 6.341316 GCTATCCTCACAGATGACAAAGTAA 58.659 40.000 0.00 0.00 0.00 2.24
534 553 5.163405 GGCTATCCTCACAGATGACAAAGTA 60.163 44.000 0.00 0.00 0.00 2.24
535 554 4.383552 GGCTATCCTCACAGATGACAAAGT 60.384 45.833 0.00 0.00 0.00 2.66
536 555 4.125703 GGCTATCCTCACAGATGACAAAG 58.874 47.826 0.00 0.00 0.00 2.77
537 556 3.118261 GGGCTATCCTCACAGATGACAAA 60.118 47.826 0.00 0.00 0.00 2.83
538 557 2.435805 GGGCTATCCTCACAGATGACAA 59.564 50.000 0.00 0.00 0.00 3.18
539 558 2.042464 GGGCTATCCTCACAGATGACA 58.958 52.381 0.00 0.00 0.00 3.58
540 559 2.042464 TGGGCTATCCTCACAGATGAC 58.958 52.381 0.00 0.00 36.20 3.06
541 560 2.477104 TGGGCTATCCTCACAGATGA 57.523 50.000 0.00 0.00 36.20 2.92
542 561 2.371179 ACATGGGCTATCCTCACAGATG 59.629 50.000 0.00 0.00 36.20 2.90
543 562 2.699160 ACATGGGCTATCCTCACAGAT 58.301 47.619 0.00 0.00 36.20 2.90
544 563 2.171237 CAACATGGGCTATCCTCACAGA 59.829 50.000 0.00 0.00 36.20 3.41
545 564 2.092753 ACAACATGGGCTATCCTCACAG 60.093 50.000 0.00 0.00 36.20 3.66
546 565 1.915489 ACAACATGGGCTATCCTCACA 59.085 47.619 0.00 0.00 36.20 3.58
547 566 2.292267 CACAACATGGGCTATCCTCAC 58.708 52.381 0.00 0.00 36.20 3.51
548 567 1.408683 GCACAACATGGGCTATCCTCA 60.409 52.381 0.00 0.00 45.01 3.86
549 568 1.312815 GCACAACATGGGCTATCCTC 58.687 55.000 0.00 0.00 45.01 3.71
550 569 3.502164 GCACAACATGGGCTATCCT 57.498 52.632 0.00 0.00 45.01 3.24
557 576 1.909700 ACTTAGGTGCACAACATGGG 58.090 50.000 20.43 4.17 0.00 4.00
558 577 3.937814 TCTACTTAGGTGCACAACATGG 58.062 45.455 20.43 5.76 0.00 3.66
559 578 4.268644 CGATCTACTTAGGTGCACAACATG 59.731 45.833 20.43 6.85 0.00 3.21
560 579 4.081642 ACGATCTACTTAGGTGCACAACAT 60.082 41.667 20.43 3.71 0.00 2.71
561 580 3.257375 ACGATCTACTTAGGTGCACAACA 59.743 43.478 20.43 0.00 0.00 3.33
562 581 3.612860 CACGATCTACTTAGGTGCACAAC 59.387 47.826 20.43 1.46 0.00 3.32
563 582 3.508402 TCACGATCTACTTAGGTGCACAA 59.492 43.478 20.43 4.13 0.00 3.33
564 583 3.086282 TCACGATCTACTTAGGTGCACA 58.914 45.455 20.43 0.00 0.00 4.57
565 584 3.777465 TCACGATCTACTTAGGTGCAC 57.223 47.619 8.80 8.80 0.00 4.57
566 585 3.951680 TGATCACGATCTACTTAGGTGCA 59.048 43.478 8.43 0.00 38.60 4.57
567 586 4.569761 TGATCACGATCTACTTAGGTGC 57.430 45.455 8.43 0.00 38.60 5.01
568 587 7.258441 TCTTTTGATCACGATCTACTTAGGTG 58.742 38.462 8.43 0.00 38.60 4.00
569 588 7.406031 TCTTTTGATCACGATCTACTTAGGT 57.594 36.000 8.43 0.00 38.60 3.08
570 589 7.976734 AGTTCTTTTGATCACGATCTACTTAGG 59.023 37.037 8.43 0.00 38.60 2.69
571 590 8.918961 AGTTCTTTTGATCACGATCTACTTAG 57.081 34.615 8.43 0.19 38.60 2.18
573 592 9.522804 GATAGTTCTTTTGATCACGATCTACTT 57.477 33.333 8.43 0.00 38.60 2.24
574 593 8.687242 TGATAGTTCTTTTGATCACGATCTACT 58.313 33.333 8.43 0.00 38.60 2.57
575 594 8.858003 TGATAGTTCTTTTGATCACGATCTAC 57.142 34.615 8.43 0.00 38.60 2.59
576 595 9.302345 GTTGATAGTTCTTTTGATCACGATCTA 57.698 33.333 8.43 2.49 38.60 1.98
577 596 7.819415 TGTTGATAGTTCTTTTGATCACGATCT 59.181 33.333 8.43 0.27 38.60 2.75
578 597 7.963981 TGTTGATAGTTCTTTTGATCACGATC 58.036 34.615 0.00 0.00 38.29 3.69
579 598 7.905604 TGTTGATAGTTCTTTTGATCACGAT 57.094 32.000 0.00 0.00 0.00 3.73
580 599 7.905604 ATGTTGATAGTTCTTTTGATCACGA 57.094 32.000 0.00 0.00 0.00 4.35
581 600 8.229811 TGAATGTTGATAGTTCTTTTGATCACG 58.770 33.333 0.00 0.00 0.00 4.35
582 601 9.552114 CTGAATGTTGATAGTTCTTTTGATCAC 57.448 33.333 0.00 0.00 0.00 3.06
583 602 8.239314 GCTGAATGTTGATAGTTCTTTTGATCA 58.761 33.333 0.00 0.00 0.00 2.92
584 603 8.457261 AGCTGAATGTTGATAGTTCTTTTGATC 58.543 33.333 0.00 0.00 0.00 2.92
585 604 8.345724 AGCTGAATGTTGATAGTTCTTTTGAT 57.654 30.769 0.00 0.00 0.00 2.57
586 605 7.750229 AGCTGAATGTTGATAGTTCTTTTGA 57.250 32.000 0.00 0.00 0.00 2.69
587 606 9.897744 TTAAGCTGAATGTTGATAGTTCTTTTG 57.102 29.630 0.00 0.00 0.00 2.44
588 607 9.899226 GTTAAGCTGAATGTTGATAGTTCTTTT 57.101 29.630 0.00 0.00 0.00 2.27
589 608 9.066892 TGTTAAGCTGAATGTTGATAGTTCTTT 57.933 29.630 0.00 0.00 0.00 2.52
590 609 8.621532 TGTTAAGCTGAATGTTGATAGTTCTT 57.378 30.769 0.00 0.00 0.00 2.52
591 610 8.621532 TTGTTAAGCTGAATGTTGATAGTTCT 57.378 30.769 0.00 0.00 0.00 3.01
592 611 9.677567 TTTTGTTAAGCTGAATGTTGATAGTTC 57.322 29.630 0.00 0.00 0.00 3.01
593 612 9.463443 GTTTTGTTAAGCTGAATGTTGATAGTT 57.537 29.630 0.00 0.00 0.00 2.24
594 613 8.850156 AGTTTTGTTAAGCTGAATGTTGATAGT 58.150 29.630 0.00 0.00 0.00 2.12
595 614 9.683069 AAGTTTTGTTAAGCTGAATGTTGATAG 57.317 29.630 0.00 0.00 0.00 2.08
601 620 9.515226 TCCTATAAGTTTTGTTAAGCTGAATGT 57.485 29.630 0.00 0.00 0.00 2.71
602 621 9.994432 CTCCTATAAGTTTTGTTAAGCTGAATG 57.006 33.333 0.00 0.00 0.00 2.67
603 622 9.178758 CCTCCTATAAGTTTTGTTAAGCTGAAT 57.821 33.333 0.00 0.00 0.00 2.57
604 623 8.161425 ACCTCCTATAAGTTTTGTTAAGCTGAA 58.839 33.333 0.00 0.00 0.00 3.02
605 624 7.686434 ACCTCCTATAAGTTTTGTTAAGCTGA 58.314 34.615 0.00 0.00 0.00 4.26
606 625 7.824779 AGACCTCCTATAAGTTTTGTTAAGCTG 59.175 37.037 0.00 0.00 0.00 4.24
607 626 7.824779 CAGACCTCCTATAAGTTTTGTTAAGCT 59.175 37.037 0.00 0.00 0.00 3.74
608 627 7.822822 TCAGACCTCCTATAAGTTTTGTTAAGC 59.177 37.037 0.00 0.00 0.00 3.09
609 628 9.892130 ATCAGACCTCCTATAAGTTTTGTTAAG 57.108 33.333 0.00 0.00 0.00 1.85
610 629 9.886132 GATCAGACCTCCTATAAGTTTTGTTAA 57.114 33.333 0.00 0.00 0.00 2.01
611 630 8.483758 GGATCAGACCTCCTATAAGTTTTGTTA 58.516 37.037 0.00 0.00 0.00 2.41
612 631 7.037586 TGGATCAGACCTCCTATAAGTTTTGTT 60.038 37.037 0.00 0.00 33.69 2.83
613 632 6.443849 TGGATCAGACCTCCTATAAGTTTTGT 59.556 38.462 0.00 0.00 33.69 2.83
614 633 6.889198 TGGATCAGACCTCCTATAAGTTTTG 58.111 40.000 0.00 0.00 33.69 2.44
615 634 7.202139 GGATGGATCAGACCTCCTATAAGTTTT 60.202 40.741 0.00 0.00 33.69 2.43
616 635 6.271159 GGATGGATCAGACCTCCTATAAGTTT 59.729 42.308 0.00 0.00 33.69 2.66
617 636 5.782845 GGATGGATCAGACCTCCTATAAGTT 59.217 44.000 0.00 0.00 33.69 2.66
618 637 5.337788 GGATGGATCAGACCTCCTATAAGT 58.662 45.833 0.00 0.00 33.69 2.24
619 638 4.714308 GGGATGGATCAGACCTCCTATAAG 59.286 50.000 0.00 0.00 33.69 1.73
620 639 4.512942 GGGGATGGATCAGACCTCCTATAA 60.513 50.000 0.00 0.00 33.69 0.98
621 640 3.012959 GGGGATGGATCAGACCTCCTATA 59.987 52.174 0.00 0.00 33.69 1.31
622 641 2.225753 GGGGATGGATCAGACCTCCTAT 60.226 54.545 0.00 0.00 33.69 2.57
623 642 1.150135 GGGGATGGATCAGACCTCCTA 59.850 57.143 0.00 0.00 33.69 2.94
624 643 0.104725 GGGGATGGATCAGACCTCCT 60.105 60.000 0.00 0.00 33.69 3.69
625 644 1.130678 GGGGGATGGATCAGACCTCC 61.131 65.000 4.80 4.80 35.81 4.30
626 645 0.104725 AGGGGGATGGATCAGACCTC 60.105 60.000 0.00 0.00 0.00 3.85
627 646 0.401105 CAGGGGGATGGATCAGACCT 60.401 60.000 0.00 0.00 0.00 3.85
628 647 0.695803 ACAGGGGGATGGATCAGACC 60.696 60.000 0.00 0.00 0.00 3.85
629 648 1.216990 AACAGGGGGATGGATCAGAC 58.783 55.000 0.00 0.00 0.00 3.51
630 649 1.985622 AAACAGGGGGATGGATCAGA 58.014 50.000 0.00 0.00 0.00 3.27
631 650 2.834638 AAAACAGGGGGATGGATCAG 57.165 50.000 0.00 0.00 0.00 2.90
632 651 3.197983 AGTAAAACAGGGGGATGGATCA 58.802 45.455 0.00 0.00 0.00 2.92
633 652 3.953542 AGTAAAACAGGGGGATGGATC 57.046 47.619 0.00 0.00 0.00 3.36
634 653 4.380791 ACTAGTAAAACAGGGGGATGGAT 58.619 43.478 0.00 0.00 0.00 3.41
635 654 3.810623 ACTAGTAAAACAGGGGGATGGA 58.189 45.455 0.00 0.00 0.00 3.41
636 655 4.720273 ACTACTAGTAAAACAGGGGGATGG 59.280 45.833 3.76 0.00 0.00 3.51
637 656 5.163332 GGACTACTAGTAAAACAGGGGGATG 60.163 48.000 3.76 0.00 0.00 3.51
638 657 4.967442 GGACTACTAGTAAAACAGGGGGAT 59.033 45.833 3.76 0.00 0.00 3.85
639 658 4.356436 GGACTACTAGTAAAACAGGGGGA 58.644 47.826 3.76 0.00 0.00 4.81
640 659 3.131755 CGGACTACTAGTAAAACAGGGGG 59.868 52.174 3.76 0.00 0.00 5.40
641 660 4.019174 TCGGACTACTAGTAAAACAGGGG 58.981 47.826 3.76 0.00 0.00 4.79
642 661 4.097589 CCTCGGACTACTAGTAAAACAGGG 59.902 50.000 3.76 0.00 0.00 4.45
643 662 4.097589 CCCTCGGACTACTAGTAAAACAGG 59.902 50.000 3.76 5.95 0.00 4.00
644 663 4.097589 CCCCTCGGACTACTAGTAAAACAG 59.902 50.000 3.76 0.00 0.00 3.16
645 664 4.019174 CCCCTCGGACTACTAGTAAAACA 58.981 47.826 3.76 0.00 0.00 2.83
646 665 4.273318 TCCCCTCGGACTACTAGTAAAAC 58.727 47.826 3.76 0.00 31.13 2.43
647 666 4.018050 ACTCCCCTCGGACTACTAGTAAAA 60.018 45.833 3.76 0.00 33.32 1.52
648 667 3.525199 ACTCCCCTCGGACTACTAGTAAA 59.475 47.826 3.76 0.00 33.32 2.01
649 668 3.118112 CACTCCCCTCGGACTACTAGTAA 60.118 52.174 3.76 0.00 33.32 2.24
650 669 2.437281 CACTCCCCTCGGACTACTAGTA 59.563 54.545 1.89 1.89 33.32 1.82
651 670 1.212441 CACTCCCCTCGGACTACTAGT 59.788 57.143 0.00 0.00 33.32 2.57
652 671 1.477195 CCACTCCCCTCGGACTACTAG 60.477 61.905 0.00 0.00 33.32 2.57
653 672 0.549950 CCACTCCCCTCGGACTACTA 59.450 60.000 0.00 0.00 33.32 1.82
654 673 1.306970 CCACTCCCCTCGGACTACT 59.693 63.158 0.00 0.00 33.32 2.57
655 674 1.757340 CCCACTCCCCTCGGACTAC 60.757 68.421 0.00 0.00 33.32 2.73
656 675 2.687902 CCCACTCCCCTCGGACTA 59.312 66.667 0.00 0.00 33.32 2.59
659 678 2.539277 TAATGCCCACTCCCCTCGGA 62.539 60.000 0.00 0.00 36.45 4.55
660 679 1.632018 TTAATGCCCACTCCCCTCGG 61.632 60.000 0.00 0.00 0.00 4.63
661 680 0.254747 TTTAATGCCCACTCCCCTCG 59.745 55.000 0.00 0.00 0.00 4.63
662 681 1.564348 TCTTTAATGCCCACTCCCCTC 59.436 52.381 0.00 0.00 0.00 4.30
663 682 1.681229 TCTTTAATGCCCACTCCCCT 58.319 50.000 0.00 0.00 0.00 4.79
664 683 2.525105 TTCTTTAATGCCCACTCCCC 57.475 50.000 0.00 0.00 0.00 4.81
665 684 4.383010 CCATTTTCTTTAATGCCCACTCCC 60.383 45.833 0.00 0.00 34.81 4.30
666 685 4.758688 CCATTTTCTTTAATGCCCACTCC 58.241 43.478 0.00 0.00 34.81 3.85
667 686 4.183865 GCCATTTTCTTTAATGCCCACTC 58.816 43.478 0.00 0.00 34.81 3.51
668 687 3.582208 TGCCATTTTCTTTAATGCCCACT 59.418 39.130 0.00 0.00 34.81 4.00
669 688 3.936564 TGCCATTTTCTTTAATGCCCAC 58.063 40.909 0.00 0.00 34.81 4.61
670 689 4.840716 ATGCCATTTTCTTTAATGCCCA 57.159 36.364 0.00 0.00 34.81 5.36
671 690 7.255208 CCAAATATGCCATTTTCTTTAATGCCC 60.255 37.037 0.00 0.00 34.81 5.36
672 691 7.641760 CCAAATATGCCATTTTCTTTAATGCC 58.358 34.615 0.00 0.00 34.81 4.40
673 692 7.012610 AGCCAAATATGCCATTTTCTTTAATGC 59.987 33.333 0.00 0.00 34.81 3.56
674 693 8.339714 CAGCCAAATATGCCATTTTCTTTAATG 58.660 33.333 0.00 0.00 35.70 1.90
675 694 8.048514 ACAGCCAAATATGCCATTTTCTTTAAT 58.951 29.630 0.00 0.00 0.00 1.40
676 695 7.393216 ACAGCCAAATATGCCATTTTCTTTAA 58.607 30.769 0.00 0.00 0.00 1.52
677 696 6.945218 ACAGCCAAATATGCCATTTTCTTTA 58.055 32.000 0.00 0.00 0.00 1.85
678 697 5.807909 ACAGCCAAATATGCCATTTTCTTT 58.192 33.333 0.00 0.00 0.00 2.52
679 698 5.425196 ACAGCCAAATATGCCATTTTCTT 57.575 34.783 0.00 0.00 0.00 2.52
680 699 5.425196 AACAGCCAAATATGCCATTTTCT 57.575 34.783 0.00 0.00 0.00 2.52
681 700 5.674318 GCAAACAGCCAAATATGCCATTTTC 60.674 40.000 0.00 0.00 37.23 2.29
682 701 4.156373 GCAAACAGCCAAATATGCCATTTT 59.844 37.500 0.00 0.00 37.23 1.82
683 702 3.690628 GCAAACAGCCAAATATGCCATTT 59.309 39.130 0.00 0.00 37.23 2.32
693 712 0.527385 GAACTGCGCAAACAGCCAAA 60.527 50.000 13.05 0.00 41.60 3.28
699 718 2.660631 CGAATTACGAACTGCGCAAACA 60.661 45.455 13.05 0.00 46.04 2.83
700 719 1.896193 CGAATTACGAACTGCGCAAAC 59.104 47.619 13.05 4.73 46.04 2.93
703 722 0.388778 TCCGAATTACGAACTGCGCA 60.389 50.000 10.98 10.98 46.04 6.09
704 723 0.297820 CTCCGAATTACGAACTGCGC 59.702 55.000 0.00 0.00 46.04 6.09
707 726 4.436847 CGTATCACTCCGAATTACGAACTG 59.563 45.833 0.00 0.00 45.77 3.16
714 733 3.302675 CGTCGACGTATCACTCCGAATTA 60.303 47.826 29.08 0.00 34.11 1.40
715 734 2.538333 CGTCGACGTATCACTCCGAATT 60.538 50.000 29.08 0.00 34.11 2.17
731 750 3.261441 GACTTTGTGTCCACGTCGA 57.739 52.632 0.00 0.00 39.69 4.20
756 775 2.318578 CATTTTGCGTGCACGAATCTT 58.681 42.857 41.19 19.66 43.02 2.40
807 826 9.175312 TGCGGGTATTTGTGAATACTATTTTAA 57.825 29.630 8.64 0.00 44.54 1.52
809 828 7.477494 GTGCGGGTATTTGTGAATACTATTTT 58.523 34.615 8.64 0.00 44.54 1.82
813 832 4.114073 CGTGCGGGTATTTGTGAATACTA 58.886 43.478 8.64 0.00 44.54 1.82
814 833 2.933906 CGTGCGGGTATTTGTGAATACT 59.066 45.455 8.64 0.00 44.54 2.12
815 834 2.931325 TCGTGCGGGTATTTGTGAATAC 59.069 45.455 1.62 1.62 44.45 1.89
861 880 1.841556 AAAGGAGTGGAGACCGCCA 60.842 57.895 0.00 0.00 33.99 5.69
862 881 1.376037 CAAAGGAGTGGAGACCGCC 60.376 63.158 0.00 0.00 33.99 6.13
863 882 0.951040 CACAAAGGAGTGGAGACCGC 60.951 60.000 0.00 0.00 35.88 5.68
879 930 2.181521 GGTGTCGCGGTTTTCCACA 61.182 57.895 6.13 0.00 40.70 4.17
880 931 2.635338 GGTGTCGCGGTTTTCCAC 59.365 61.111 6.13 3.95 40.70 4.02
881 932 2.968156 CGGTGTCGCGGTTTTCCA 60.968 61.111 6.13 0.00 40.70 3.53
883 934 2.547798 GTCGGTGTCGCGGTTTTC 59.452 61.111 6.13 0.00 36.13 2.29
884 935 3.332409 CGTCGGTGTCGCGGTTTT 61.332 61.111 6.13 0.00 36.13 2.43
958 1009 4.026357 GGGAGGGGGACAGGAGGT 62.026 72.222 0.00 0.00 0.00 3.85
964 1015 4.075793 CGGAGAGGGAGGGGGACA 62.076 72.222 0.00 0.00 0.00 4.02
965 1016 4.862823 CCGGAGAGGGAGGGGGAC 62.863 77.778 0.00 0.00 35.97 4.46
1236 1291 4.806339 AAGGGCGGAGGGAGGGAG 62.806 72.222 0.00 0.00 0.00 4.30
1237 1292 4.798682 GAAGGGCGGAGGGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
1377 1442 3.019003 AACCCCATCCAGACGAGCG 62.019 63.158 0.00 0.00 0.00 5.03
1459 1524 1.514553 GGGTCGGCCAGTACAGTAC 59.485 63.158 9.07 2.05 36.17 2.73
1460 1525 1.683365 GGGGTCGGCCAGTACAGTA 60.683 63.158 9.07 0.00 36.17 2.74
1461 1526 3.001406 GGGGTCGGCCAGTACAGT 61.001 66.667 9.07 0.00 36.17 3.55
1462 1527 3.782443 GGGGGTCGGCCAGTACAG 61.782 72.222 9.07 0.00 36.17 2.74
1483 1548 1.185315 AATTCTGTGCCCCAAATCGG 58.815 50.000 0.00 0.00 0.00 4.18
1494 1559 4.524328 ACAAGGCTAGGGAAAAATTCTGTG 59.476 41.667 0.00 0.00 0.00 3.66
1495 1560 4.524328 CACAAGGCTAGGGAAAAATTCTGT 59.476 41.667 0.00 0.00 0.00 3.41
1496 1561 4.766891 TCACAAGGCTAGGGAAAAATTCTG 59.233 41.667 0.00 0.00 0.00 3.02
1497 1562 4.998051 TCACAAGGCTAGGGAAAAATTCT 58.002 39.130 0.00 0.00 0.00 2.40
1498 1563 5.185828 ACATCACAAGGCTAGGGAAAAATTC 59.814 40.000 0.00 0.00 0.00 2.17
1499 1564 5.086621 ACATCACAAGGCTAGGGAAAAATT 58.913 37.500 0.00 0.00 0.00 1.82
1501 1566 4.079253 GACATCACAAGGCTAGGGAAAAA 58.921 43.478 0.00 0.00 0.00 1.94
1504 1569 2.237143 CAGACATCACAAGGCTAGGGAA 59.763 50.000 0.00 0.00 0.00 3.97
1506 1571 1.745141 GCAGACATCACAAGGCTAGGG 60.745 57.143 0.00 0.00 0.00 3.53
1507 1572 1.065926 TGCAGACATCACAAGGCTAGG 60.066 52.381 0.00 0.00 0.00 3.02
1508 1573 2.277969 CTGCAGACATCACAAGGCTAG 58.722 52.381 8.42 0.00 0.00 3.42
1509 1574 1.625315 ACTGCAGACATCACAAGGCTA 59.375 47.619 23.35 0.00 0.00 3.93
1510 1575 0.399454 ACTGCAGACATCACAAGGCT 59.601 50.000 23.35 0.00 0.00 4.58
1511 1576 0.801251 GACTGCAGACATCACAAGGC 59.199 55.000 23.35 0.00 0.00 4.35
1515 1580 0.673437 TCGTGACTGCAGACATCACA 59.327 50.000 26.38 15.61 42.37 3.58
1562 1638 5.187186 ACATCCACCGTTCTTCAGTTATACT 59.813 40.000 0.00 0.00 0.00 2.12
1631 1713 4.464244 TCAGAGACATAGAAAGGACACTGG 59.536 45.833 0.00 0.00 0.00 4.00
1632 1714 5.651387 TCAGAGACATAGAAAGGACACTG 57.349 43.478 0.00 0.00 0.00 3.66
1773 1855 2.651455 GTACTAACCAATTCCAGGGCC 58.349 52.381 0.00 0.00 0.00 5.80
1774 1856 2.651455 GGTACTAACCAATTCCAGGGC 58.349 52.381 0.00 0.00 45.98 5.19
1786 1868 7.121759 TCAGTCCACATACAGTAAGGTACTAAC 59.878 40.741 0.00 0.00 38.49 2.34
1787 1869 7.177184 TCAGTCCACATACAGTAAGGTACTAA 58.823 38.462 0.00 0.00 38.49 2.24
1809 1892 4.330074 ACAGACAAGAGACAAACGTTTCAG 59.670 41.667 11.37 3.50 0.00 3.02
1814 1897 2.431057 AGGACAGACAAGAGACAAACGT 59.569 45.455 0.00 0.00 0.00 3.99
1816 1899 3.561725 CCAAGGACAGACAAGAGACAAAC 59.438 47.826 0.00 0.00 0.00 2.93
1819 1902 2.677914 TCCAAGGACAGACAAGAGACA 58.322 47.619 0.00 0.00 0.00 3.41
1829 1912 6.016777 GCATTACTAATCCATTCCAAGGACAG 60.017 42.308 0.00 0.00 38.13 3.51
1833 1916 5.278660 GCAGCATTACTAATCCATTCCAAGG 60.279 44.000 0.00 0.00 0.00 3.61
1857 1940 4.377897 ACAACTTAACCGACAAGAGGAAG 58.622 43.478 0.00 0.00 0.00 3.46
1889 1972 4.003648 GCAAGCTCAGGTGTAACAGTAAT 58.996 43.478 0.00 0.00 39.98 1.89
1901 1984 0.606604 AGCAAATTGGCAAGCTCAGG 59.393 50.000 7.75 0.00 35.83 3.86
1953 2036 6.494491 TGGAGACCAATTTGTCAATCTGATTT 59.506 34.615 11.85 0.00 37.73 2.17
2061 2144 1.242076 CAGTGCCCACCTTCAAAGAG 58.758 55.000 0.00 0.00 0.00 2.85
2113 2196 0.613260 AAGGGCTCATGCTCACGTAA 59.387 50.000 0.00 0.00 43.51 3.18
2114 2197 0.613260 AAAGGGCTCATGCTCACGTA 59.387 50.000 0.00 0.00 43.51 3.57
2117 2201 1.336125 GCATAAAGGGCTCATGCTCAC 59.664 52.381 0.22 0.00 43.51 3.51
2144 2228 7.672983 AGAACAAAACGAGTAATGATGACAT 57.327 32.000 0.00 0.00 38.50 3.06
2146 2230 9.478019 CATAAGAACAAAACGAGTAATGATGAC 57.522 33.333 0.00 0.00 0.00 3.06
2154 2238 4.752604 TGCTGCATAAGAACAAAACGAGTA 59.247 37.500 0.00 0.00 0.00 2.59
2159 2243 4.389687 CCCATTGCTGCATAAGAACAAAAC 59.610 41.667 1.84 0.00 0.00 2.43
2248 2332 5.930837 ACAGATTTTGAACAGGTTTCCAA 57.069 34.783 0.00 0.00 0.00 3.53
2275 2359 3.315470 GGAAACAACTTGTCACTCCCTTC 59.685 47.826 0.00 0.00 0.00 3.46
2282 2366 1.748493 TGCTGGGAAACAACTTGTCAC 59.252 47.619 0.00 0.00 0.00 3.67
2442 2526 3.788227 AATAACTGCTTCCCACTGTCA 57.212 42.857 0.00 0.00 0.00 3.58
2589 2673 6.259608 CAGGACTATTGTCATCAGAAATGGTC 59.740 42.308 9.51 0.00 44.61 4.02
2787 2871 3.058224 GTGAGAACACATGTTGCTTACCC 60.058 47.826 1.07 0.00 45.32 3.69
2883 2967 1.674962 GACAGCATTTCATCAGAGGCC 59.325 52.381 0.00 0.00 0.00 5.19
2917 3001 2.092429 GGTCTGGATACCTTGATGCCAA 60.092 50.000 0.00 0.00 36.53 4.52
3127 3211 3.508845 TCCCTCCAGCTTATTATTGCC 57.491 47.619 0.00 0.00 0.00 4.52
3229 3313 3.831911 CCCTTCAGGTTATTGCTTTCCAA 59.168 43.478 0.00 0.00 37.94 3.53
3458 3542 2.758736 GATGAATCTCCTCCCATCGG 57.241 55.000 0.00 0.00 0.00 4.18
3601 3695 1.813092 GCTCTGGGCACTCATACATGG 60.813 57.143 0.00 0.00 41.35 3.66
3758 3862 0.037326 ACACTGCCCATGTCTACACG 60.037 55.000 0.00 0.00 0.00 4.49
3815 3919 4.519213 CCACCGATTTCCTTGTGGTATAA 58.481 43.478 0.00 0.00 42.61 0.98
3821 3925 2.107950 TAGCCACCGATTTCCTTGTG 57.892 50.000 0.00 0.00 0.00 3.33
3877 3987 6.881602 GGTTTTGCCATAAATAAATCACCCAA 59.118 34.615 0.00 0.00 37.17 4.12
3942 4178 7.646526 CACCATAAATCATGTTAACTGATGCTG 59.353 37.037 16.33 13.86 33.69 4.41
3965 4201 2.737252 GTGACCTTCGACTGATTTCACC 59.263 50.000 0.00 0.00 0.00 4.02
3975 4211 2.138596 TTACCAACGTGACCTTCGAC 57.861 50.000 0.00 0.00 0.00 4.20
4006 4247 9.006839 TCTCGTACAGTTATAAAAGACTTCTGA 57.993 33.333 6.38 0.00 0.00 3.27
4104 4346 7.571025 AGTCTGACCTAGGACAAAGTTAAAAA 58.429 34.615 17.98 0.00 35.18 1.94
4115 4357 8.722394 CAAATCTTAAAAAGTCTGACCTAGGAC 58.278 37.037 17.98 10.59 0.00 3.85
4120 4362 7.060421 TGGTCAAATCTTAAAAAGTCTGACCT 58.940 34.615 22.76 0.00 44.08 3.85
4126 4368 7.712797 TGGACTTGGTCAAATCTTAAAAAGTC 58.287 34.615 0.00 0.00 40.83 3.01
4143 4385 8.034215 TGTTTGCATATTTTTCTATGGACTTGG 58.966 33.333 0.00 0.00 30.33 3.61
4234 4476 7.168219 TCAGCCACAGATTCAAAGTTAATACT 58.832 34.615 0.00 0.00 35.68 2.12
4235 4477 7.377766 TCAGCCACAGATTCAAAGTTAATAC 57.622 36.000 0.00 0.00 0.00 1.89
4236 4478 7.611467 ACATCAGCCACAGATTCAAAGTTAATA 59.389 33.333 0.00 0.00 0.00 0.98
4237 4479 6.435277 ACATCAGCCACAGATTCAAAGTTAAT 59.565 34.615 0.00 0.00 0.00 1.40
4238 4480 5.769662 ACATCAGCCACAGATTCAAAGTTAA 59.230 36.000 0.00 0.00 0.00 2.01
4245 4487 3.429410 CGTCTACATCAGCCACAGATTCA 60.429 47.826 0.00 0.00 0.00 2.57
4263 4505 0.601311 GACTTGGCACTGAAGCGTCT 60.601 55.000 0.31 0.00 34.64 4.18
4264 4506 1.569479 GGACTTGGCACTGAAGCGTC 61.569 60.000 0.00 0.00 34.64 5.19
4266 4508 0.037326 TAGGACTTGGCACTGAAGCG 60.037 55.000 0.00 0.00 34.64 4.68
4267 4509 1.807142 GTTAGGACTTGGCACTGAAGC 59.193 52.381 0.00 0.00 0.00 3.86
4268 4510 3.409026 AGTTAGGACTTGGCACTGAAG 57.591 47.619 0.00 0.00 29.87 3.02
4269 4511 3.857157 AAGTTAGGACTTGGCACTGAA 57.143 42.857 0.00 0.00 44.27 3.02
4301 4543 6.808829 TGAACGTTCACCGGTTAGATATATT 58.191 36.000 26.53 0.00 35.89 1.28
4302 4544 6.395426 TGAACGTTCACCGGTTAGATATAT 57.605 37.500 26.53 0.00 35.89 0.86
4366 4608 2.348362 TGTCATGCGTTTGATCACGATC 59.652 45.455 9.68 0.00 43.15 3.69
4458 4709 7.414319 GCCAACATAACTAAAATTGCATTGCAT 60.414 33.333 12.95 0.00 38.76 3.96
4463 4714 6.539464 CCATGCCAACATAACTAAAATTGCAT 59.461 34.615 0.00 0.00 33.67 3.96
4464 4715 5.873712 CCATGCCAACATAACTAAAATTGCA 59.126 36.000 0.00 0.00 33.67 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.