Multiple sequence alignment - TraesCS1A01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G355200 chr1A 100.000 5880 0 0 1 5880 537960462 537966341 0.000000e+00 10859.0
1 TraesCS1A01G355200 chr1A 92.593 243 14 3 5390 5631 345187464 345187703 4.360000e-91 346.0
2 TraesCS1A01G355200 chr1D 95.145 3522 91 23 1884 5386 439882240 439878780 0.000000e+00 5483.0
3 TraesCS1A01G355200 chr1D 86.403 1868 138 58 4 1849 439884008 439882235 0.000000e+00 1936.0
4 TraesCS1A01G355200 chr1D 92.308 78 5 1 2 78 439884257 439884180 6.230000e-20 110.0
5 TraesCS1A01G355200 chr1B 96.042 2855 82 11 2314 5156 597465145 597462310 0.000000e+00 4617.0
6 TraesCS1A01G355200 chr1B 85.888 1566 112 55 189 1732 597467304 597465826 0.000000e+00 1567.0
7 TraesCS1A01G355200 chr1B 92.525 602 29 7 1718 2316 597465814 597465226 0.000000e+00 848.0
8 TraesCS1A01G355200 chr1B 90.361 166 12 2 5228 5389 597462281 597462116 1.280000e-51 215.0
9 TraesCS1A01G355200 chr2B 85.644 404 29 10 5390 5766 406089724 406090125 1.190000e-106 398.0
10 TraesCS1A01G355200 chr7D 85.149 404 31 9 5390 5766 449561808 449561407 2.570000e-103 387.0
11 TraesCS1A01G355200 chr7D 82.368 380 43 13 5390 5766 612879228 612879586 5.720000e-80 309.0
12 TraesCS1A01G355200 chr7D 96.341 82 2 1 5774 5855 431100048 431100128 3.700000e-27 134.0
13 TraesCS1A01G355200 chr7D 95.000 80 4 0 5774 5853 449561468 449561389 6.190000e-25 126.0
14 TraesCS1A01G355200 chr7D 88.776 98 9 2 5774 5871 612879526 612879621 1.040000e-22 119.0
15 TraesCS1A01G355200 chr7D 84.946 93 11 3 3387 3477 227169217 227169126 2.260000e-14 91.6
16 TraesCS1A01G355200 chr3D 84.653 404 31 10 5390 5766 334019299 334019698 2.000000e-99 374.0
17 TraesCS1A01G355200 chr3D 81.402 328 32 10 5465 5766 577462117 577462441 2.120000e-59 241.0
18 TraesCS1A01G355200 chr3D 95.122 82 3 1 5774 5855 334019638 334019718 1.720000e-25 128.0
19 TraesCS1A01G355200 chr3D 93.902 82 4 1 5774 5855 577462381 577462461 8.000000e-24 122.0
20 TraesCS1A01G355200 chr3D 85.217 115 11 3 5223 5331 524713601 524713715 4.820000e-21 113.0
21 TraesCS1A01G355200 chr3D 84.483 116 14 3 5219 5330 290858128 290858243 1.730000e-20 111.0
22 TraesCS1A01G355200 chr3D 95.082 61 3 0 3417 3477 251316077 251316137 4.850000e-16 97.1
23 TraesCS1A01G355200 chr7A 84.352 409 31 11 5386 5766 520564697 520565100 2.590000e-98 370.0
24 TraesCS1A01G355200 chr7A 82.576 132 15 5 5223 5348 573430945 573430816 6.230000e-20 110.0
25 TraesCS1A01G355200 chr2A 89.744 234 21 3 5397 5628 773293078 773293310 4.460000e-76 296.0
26 TraesCS1A01G355200 chr2A 100.000 29 0 0 3417 3445 745148698 745148670 3.000000e-03 54.7
27 TraesCS1A01G355200 chr7B 94.531 128 5 2 5390 5516 82566728 82566854 4.650000e-46 196.0
28 TraesCS1A01G355200 chr7B 92.969 128 7 2 5390 5516 82557405 82557531 1.010000e-42 185.0
29 TraesCS1A01G355200 chr7B 83.333 132 14 5 5223 5348 533773470 533773341 1.340000e-21 115.0
30 TraesCS1A01G355200 chr7B 86.022 93 10 3 3387 3477 198935112 198935021 4.850000e-16 97.1
31 TraesCS1A01G355200 chr4A 95.294 85 3 1 5774 5858 465278995 465278912 3.700000e-27 134.0
32 TraesCS1A01G355200 chr5D 87.179 117 10 2 5219 5330 412263335 412263451 1.720000e-25 128.0
33 TraesCS1A01G355200 chr5D 85.882 85 7 3 3389 3473 212688252 212688173 1.050000e-12 86.1
34 TraesCS1A01G355200 chr4D 94.048 84 4 1 5775 5858 25387263 25387181 6.190000e-25 126.0
35 TraesCS1A01G355200 chr4D 83.333 90 11 4 3390 3477 366320048 366320135 4.880000e-11 80.5
36 TraesCS1A01G355200 chr5B 93.976 83 3 2 5773 5855 505364585 505364505 2.220000e-24 124.0
37 TraesCS1A01G355200 chr5A 86.325 117 11 2 5219 5330 524028398 524028514 8.000000e-24 122.0
38 TraesCS1A01G355200 chr3A 93.902 82 4 1 5774 5855 730597956 730598036 8.000000e-24 122.0
39 TraesCS1A01G355200 chr3A 84.746 118 13 2 5219 5331 659015391 659015508 4.820000e-21 113.0
40 TraesCS1A01G355200 chr3A 95.082 61 3 0 3417 3477 332556227 332556167 4.850000e-16 97.1
41 TraesCS1A01G355200 chr3A 94.915 59 3 0 3417 3475 177109019 177109077 6.270000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G355200 chr1A 537960462 537966341 5879 False 10859.000000 10859 100.000000 1 5880 1 chr1A.!!$F2 5879
1 TraesCS1A01G355200 chr1D 439878780 439884257 5477 True 2509.666667 5483 91.285333 2 5386 3 chr1D.!!$R1 5384
2 TraesCS1A01G355200 chr1B 597462116 597467304 5188 True 1811.750000 4617 91.204000 189 5389 4 chr1B.!!$R1 5200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 406 0.171231 CGCACTCACTCTTCATCCGA 59.829 55.000 0.00 0.0 0.0 4.55 F
932 1238 0.246086 CTCCAGTCAGTCAGCCAGTC 59.754 60.000 0.00 0.0 0.0 3.51 F
1586 1894 0.255890 TAGAAATGGGCTGCAGGGTC 59.744 55.000 17.12 0.0 0.0 4.46 F
1816 2153 0.322187 AATTTGTCGCGGGGCTTAGT 60.322 50.000 6.13 0.0 0.0 2.24 F
3233 3664 1.135286 GTTGCTGCTGTTATTCTGGGC 60.135 52.381 0.00 0.0 0.0 5.36 F
4021 4480 3.648339 AATGCTACAGTGTTTGCCTTG 57.352 42.857 0.00 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2210 0.108585 TGGCAAGTGACAGTCTTCCC 59.891 55.000 1.31 0.00 0.00 3.97 R
2348 2773 1.064463 CCCTTCTCTTGCCTGCCAATA 60.064 52.381 0.00 0.00 31.91 1.90 R
3233 3664 1.466856 ATGCTGCATTGGTACCTGTG 58.533 50.000 14.36 12.60 0.00 3.66 R
3446 3877 2.742589 GTCCCGAAAAGCTTGTCTTAGG 59.257 50.000 14.70 11.94 33.88 2.69 R
4061 4520 0.035820 TGCGGGTCTTCATGGTTACC 60.036 55.000 0.00 0.00 0.00 2.85 R
5203 5675 0.244178 GAGACACGACAGAGGTTCCC 59.756 60.000 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 362 4.327982 TGCCACTATTGTCTGCTATCTC 57.672 45.455 0.00 0.00 0.00 2.75
87 367 5.048434 CCACTATTGTCTGCTATCTCGATGA 60.048 44.000 0.00 0.00 0.00 2.92
89 369 6.527372 CACTATTGTCTGCTATCTCGATGATG 59.473 42.308 7.40 1.17 36.65 3.07
96 376 4.344104 TGCTATCTCGATGATGTCCCATA 58.656 43.478 7.40 0.00 36.65 2.74
98 378 4.400884 GCTATCTCGATGATGTCCCATACT 59.599 45.833 7.40 0.00 36.65 2.12
108 388 1.069513 TGTCCCATACTTATTCCCGCG 59.930 52.381 0.00 0.00 0.00 6.46
110 390 0.250124 CCCATACTTATTCCCGCGCA 60.250 55.000 8.75 0.00 0.00 6.09
111 391 0.865769 CCATACTTATTCCCGCGCAC 59.134 55.000 8.75 0.00 0.00 5.34
112 392 1.540363 CCATACTTATTCCCGCGCACT 60.540 52.381 8.75 0.00 0.00 4.40
113 393 1.792949 CATACTTATTCCCGCGCACTC 59.207 52.381 8.75 0.00 0.00 3.51
114 394 0.818938 TACTTATTCCCGCGCACTCA 59.181 50.000 8.75 0.00 0.00 3.41
115 395 0.739813 ACTTATTCCCGCGCACTCAC 60.740 55.000 8.75 0.00 0.00 3.51
116 396 0.460284 CTTATTCCCGCGCACTCACT 60.460 55.000 8.75 0.00 0.00 3.41
117 397 0.459585 TTATTCCCGCGCACTCACTC 60.460 55.000 8.75 0.00 0.00 3.51
118 398 1.320344 TATTCCCGCGCACTCACTCT 61.320 55.000 8.75 0.00 0.00 3.24
119 399 2.172483 ATTCCCGCGCACTCACTCTT 62.172 55.000 8.75 0.00 0.00 2.85
120 400 2.765250 TTCCCGCGCACTCACTCTTC 62.765 60.000 8.75 0.00 0.00 2.87
121 401 2.049156 CCGCGCACTCACTCTTCA 60.049 61.111 8.75 0.00 0.00 3.02
122 402 1.446792 CCGCGCACTCACTCTTCAT 60.447 57.895 8.75 0.00 0.00 2.57
123 403 1.416813 CCGCGCACTCACTCTTCATC 61.417 60.000 8.75 0.00 0.00 2.92
124 404 1.416813 CGCGCACTCACTCTTCATCC 61.417 60.000 8.75 0.00 0.00 3.51
125 405 1.416813 GCGCACTCACTCTTCATCCG 61.417 60.000 0.30 0.00 0.00 4.18
126 406 0.171231 CGCACTCACTCTTCATCCGA 59.829 55.000 0.00 0.00 0.00 4.55
127 407 1.634702 GCACTCACTCTTCATCCGAC 58.365 55.000 0.00 0.00 0.00 4.79
128 408 1.901538 CACTCACTCTTCATCCGACG 58.098 55.000 0.00 0.00 0.00 5.12
129 409 0.811915 ACTCACTCTTCATCCGACGG 59.188 55.000 7.84 7.84 0.00 4.79
130 410 0.526524 CTCACTCTTCATCCGACGGC 60.527 60.000 9.66 0.00 0.00 5.68
131 411 1.519455 CACTCTTCATCCGACGGCC 60.519 63.158 9.66 0.00 0.00 6.13
132 412 1.982395 ACTCTTCATCCGACGGCCA 60.982 57.895 9.66 0.00 0.00 5.36
133 413 1.519455 CTCTTCATCCGACGGCCAC 60.519 63.158 9.66 0.00 0.00 5.01
134 414 2.225791 CTCTTCATCCGACGGCCACA 62.226 60.000 9.66 0.00 0.00 4.17
135 415 2.047655 TTCATCCGACGGCCACAC 60.048 61.111 9.66 0.00 0.00 3.82
136 416 3.599285 TTCATCCGACGGCCACACC 62.599 63.158 9.66 0.00 0.00 4.16
137 417 4.386951 CATCCGACGGCCACACCA 62.387 66.667 9.66 0.00 39.03 4.17
138 418 4.082523 ATCCGACGGCCACACCAG 62.083 66.667 9.66 0.00 39.03 4.00
142 422 4.295119 GACGGCCACACCAGTCGT 62.295 66.667 2.24 0.00 39.03 4.34
143 423 4.295119 ACGGCCACACCAGTCGTC 62.295 66.667 2.24 0.00 39.03 4.20
144 424 4.293648 CGGCCACACCAGTCGTCA 62.294 66.667 2.24 0.00 39.03 4.35
145 425 2.347490 GGCCACACCAGTCGTCAT 59.653 61.111 0.00 0.00 38.86 3.06
146 426 1.302511 GGCCACACCAGTCGTCATT 60.303 57.895 0.00 0.00 38.86 2.57
147 427 0.889186 GGCCACACCAGTCGTCATTT 60.889 55.000 0.00 0.00 38.86 2.32
148 428 0.517316 GCCACACCAGTCGTCATTTC 59.483 55.000 0.00 0.00 0.00 2.17
149 429 1.877637 CCACACCAGTCGTCATTTCA 58.122 50.000 0.00 0.00 0.00 2.69
150 430 1.531149 CCACACCAGTCGTCATTTCAC 59.469 52.381 0.00 0.00 0.00 3.18
151 431 2.209273 CACACCAGTCGTCATTTCACA 58.791 47.619 0.00 0.00 0.00 3.58
152 432 2.807967 CACACCAGTCGTCATTTCACAT 59.192 45.455 0.00 0.00 0.00 3.21
165 445 6.128035 CGTCATTTCACATGGTATCTTTTCCA 60.128 38.462 0.00 0.00 38.14 3.53
168 448 3.620488 TCACATGGTATCTTTTCCAGCC 58.380 45.455 0.00 0.00 37.14 4.85
180 460 6.084326 TCTTTTCCAGCCAAAATTAGACAC 57.916 37.500 0.00 0.00 0.00 3.67
181 461 5.596361 TCTTTTCCAGCCAAAATTAGACACA 59.404 36.000 0.00 0.00 0.00 3.72
182 462 4.846779 TTCCAGCCAAAATTAGACACAC 57.153 40.909 0.00 0.00 0.00 3.82
183 463 3.826524 TCCAGCCAAAATTAGACACACA 58.173 40.909 0.00 0.00 0.00 3.72
184 464 3.568007 TCCAGCCAAAATTAGACACACAC 59.432 43.478 0.00 0.00 0.00 3.82
218 499 6.403527 CGATTCATCCAAAGCACAATGTTAGA 60.404 38.462 0.00 0.00 0.00 2.10
219 500 6.839124 TTCATCCAAAGCACAATGTTAGAT 57.161 33.333 0.00 0.00 0.00 1.98
223 504 6.012658 TCCAAAGCACAATGTTAGATTGTC 57.987 37.500 4.70 1.59 39.94 3.18
252 533 1.785041 CTGCGGATATTTGGTGGCGG 61.785 60.000 0.00 0.00 0.00 6.13
317 598 0.822121 GAGTTTGTGGCCCGACCTTT 60.822 55.000 0.00 0.00 40.22 3.11
321 602 1.104577 TTGTGGCCCGACCTTTGTTC 61.105 55.000 0.00 0.00 40.22 3.18
333 614 4.216257 CGACCTTTGTTCATCAGACCAAAT 59.784 41.667 0.00 0.00 35.90 2.32
334 615 5.411361 CGACCTTTGTTCATCAGACCAAATA 59.589 40.000 0.00 0.00 35.90 1.40
336 617 6.981722 ACCTTTGTTCATCAGACCAAATAAC 58.018 36.000 0.00 0.00 35.90 1.89
337 618 6.777580 ACCTTTGTTCATCAGACCAAATAACT 59.222 34.615 0.00 0.00 35.90 2.24
346 627 9.513906 TCATCAGACCAAATAACTTTATTGTCA 57.486 29.630 11.72 0.00 32.65 3.58
368 651 7.068593 TGTCACTTTTGATCTCCTTTGATTTGT 59.931 33.333 0.00 0.00 33.11 2.83
371 654 8.025445 CACTTTTGATCTCCTTTGATTTGTAGG 58.975 37.037 0.00 0.00 0.00 3.18
372 655 7.944554 ACTTTTGATCTCCTTTGATTTGTAGGA 59.055 33.333 0.00 0.00 0.00 2.94
373 656 8.704849 TTTTGATCTCCTTTGATTTGTAGGAA 57.295 30.769 0.00 0.00 0.00 3.36
377 660 8.742777 TGATCTCCTTTGATTTGTAGGAAAATG 58.257 33.333 0.00 0.00 29.89 2.32
440 727 1.187974 TCGCCCGTAAGAAGAATGGA 58.812 50.000 0.00 0.00 43.02 3.41
456 743 4.101119 AGAATGGATTCCGGTTAGTGGTAG 59.899 45.833 0.00 0.00 37.51 3.18
476 763 3.084786 AGCTGCTCCATTACTCAAAACC 58.915 45.455 0.00 0.00 0.00 3.27
481 768 2.156098 TCCATTACTCAAAACCGTGCC 58.844 47.619 0.00 0.00 0.00 5.01
527 814 3.787785 ACAAAAACCCATCGTTCAAACC 58.212 40.909 0.00 0.00 31.78 3.27
528 815 3.127589 CAAAAACCCATCGTTCAAACCC 58.872 45.455 0.00 0.00 31.78 4.11
554 846 2.750237 GGTGCGCCCTTTCGGATT 60.750 61.111 4.45 0.00 31.35 3.01
558 850 3.098555 CGCCCTTTCGGATTTCGG 58.901 61.111 0.00 0.00 39.77 4.30
737 1029 4.699522 GTCACGGCCCACTCCCAC 62.700 72.222 0.00 0.00 0.00 4.61
798 1093 4.235762 CCCGACACCGCCCCATAG 62.236 72.222 0.00 0.00 0.00 2.23
821 1126 1.697754 ACCCCCTTCCCATAGGCAG 60.698 63.158 0.00 0.00 33.73 4.85
822 1127 2.464403 CCCCCTTCCCATAGGCAGG 61.464 68.421 0.00 0.00 45.64 4.85
823 1128 2.517919 CCCTTCCCATAGGCAGGC 59.482 66.667 0.00 0.00 44.77 4.85
824 1129 2.111878 CCTTCCCATAGGCAGGCG 59.888 66.667 0.00 0.00 39.92 5.52
895 1201 4.783667 GCCCATATTTACGGCGGA 57.216 55.556 13.24 0.00 31.92 5.54
900 1206 0.321298 CATATTTACGGCGGAGGGGG 60.321 60.000 13.24 0.00 0.00 5.40
901 1207 0.472352 ATATTTACGGCGGAGGGGGA 60.472 55.000 13.24 0.00 0.00 4.81
902 1208 0.472352 TATTTACGGCGGAGGGGGAT 60.472 55.000 13.24 0.00 0.00 3.85
903 1209 1.765597 ATTTACGGCGGAGGGGGATC 61.766 60.000 13.24 0.00 0.00 3.36
924 1230 4.803426 CGCCCGCTCCAGTCAGTC 62.803 72.222 0.00 0.00 0.00 3.51
928 1234 2.125753 CGCTCCAGTCAGTCAGCC 60.126 66.667 0.00 0.00 0.00 4.85
929 1235 2.935740 CGCTCCAGTCAGTCAGCCA 61.936 63.158 0.00 0.00 0.00 4.75
931 1237 1.825281 GCTCCAGTCAGTCAGCCAGT 61.825 60.000 0.00 0.00 0.00 4.00
932 1238 0.246086 CTCCAGTCAGTCAGCCAGTC 59.754 60.000 0.00 0.00 0.00 3.51
933 1239 1.080230 CCAGTCAGTCAGCCAGTCG 60.080 63.158 0.00 0.00 0.00 4.18
961 1267 3.224324 GTGGCGAGGGAGGCGATA 61.224 66.667 0.00 0.00 39.82 2.92
962 1268 2.912542 TGGCGAGGGAGGCGATAG 60.913 66.667 0.00 0.00 39.82 2.08
976 1282 2.851805 CGATAGCACAGTACAGAGCA 57.148 50.000 10.09 0.00 0.00 4.26
977 1283 2.725490 CGATAGCACAGTACAGAGCAG 58.275 52.381 10.09 0.00 0.00 4.24
978 1284 2.356069 CGATAGCACAGTACAGAGCAGA 59.644 50.000 10.09 0.00 0.00 4.26
1278 1584 2.508663 GGGTAACGCACGCTCCTC 60.509 66.667 0.00 0.00 37.14 3.71
1283 1589 2.221906 TAACGCACGCTCCTCCTTCC 62.222 60.000 0.00 0.00 0.00 3.46
1284 1590 3.764466 CGCACGCTCCTCCTTCCT 61.764 66.667 0.00 0.00 0.00 3.36
1288 1594 1.380650 ACGCTCCTCCTTCCTCTCC 60.381 63.158 0.00 0.00 0.00 3.71
1305 1611 4.195416 CTCTCCCTGCTTTACTTGGATTC 58.805 47.826 0.00 0.00 0.00 2.52
1361 1667 2.203351 CCCTTGCCCCGCCTAATC 60.203 66.667 0.00 0.00 0.00 1.75
1377 1683 2.558554 AATCCGTTCGTCTGGAGCCG 62.559 60.000 0.00 0.00 37.76 5.52
1563 1871 2.181975 CCCCTTCCCTCTAACGTGTTA 58.818 52.381 0.00 0.00 0.00 2.41
1586 1894 0.255890 TAGAAATGGGCTGCAGGGTC 59.744 55.000 17.12 0.00 0.00 4.46
1650 1958 4.816786 TTTGACCGTTTTAAGGTAGTGC 57.183 40.909 0.00 0.00 43.01 4.40
1732 2040 4.864247 GTGCATCTCAAAACAACAACAACT 59.136 37.500 0.00 0.00 0.00 3.16
1743 2078 3.004734 ACAACAACAACTAGGCATGCTTC 59.995 43.478 18.92 1.03 0.00 3.86
1816 2153 0.322187 AATTTGTCGCGGGGCTTAGT 60.322 50.000 6.13 0.00 0.00 2.24
1848 2185 7.508687 AGGGAAATTTGTTTGCTTTATCACTT 58.491 30.769 0.00 0.00 0.00 3.16
1849 2186 8.646900 AGGGAAATTTGTTTGCTTTATCACTTA 58.353 29.630 0.00 0.00 0.00 2.24
1957 2294 2.790433 TGTGCCAACCTTATTGAGTCC 58.210 47.619 0.00 0.00 0.00 3.85
2000 2338 6.091441 GCAAGATGTAGACCACTGTTCTTTAG 59.909 42.308 0.00 0.00 0.00 1.85
2005 2343 6.513180 TGTAGACCACTGTTCTTTAGTTGAG 58.487 40.000 0.00 0.00 0.00 3.02
2038 2376 5.766222 GACTAAGGTTGTTAGTCGTTCTGA 58.234 41.667 8.71 0.00 40.74 3.27
2047 2385 4.038282 TGTTAGTCGTTCTGAACTGCCTTA 59.962 41.667 17.60 3.08 0.00 2.69
2125 2465 2.911102 GCAATTTTTAGTCGTCTGCTGC 59.089 45.455 0.00 0.00 0.00 5.25
2504 2929 3.007940 CACACTTAATGACTGGGACCTCA 59.992 47.826 0.00 0.00 0.00 3.86
2573 2998 9.492973 CAATGGATAAGTATGTCACATGTCATA 57.507 33.333 0.00 0.00 0.00 2.15
2615 3040 4.710423 TGATTTTATTGCCGCTGCTTTA 57.290 36.364 0.70 0.00 38.71 1.85
2684 3109 2.234143 AGGCAAAGAGAGCTTGGTTTC 58.766 47.619 0.00 0.00 33.79 2.78
2864 3289 3.288092 ACTTGACCTTTCACTGGAAACC 58.712 45.455 0.00 0.00 38.07 3.27
3132 3563 8.954950 ATCTTTTCTATAACCTGACATCAGTG 57.045 34.615 8.06 2.62 42.27 3.66
3133 3564 8.134202 TCTTTTCTATAACCTGACATCAGTGA 57.866 34.615 8.06 0.00 42.27 3.41
3233 3664 1.135286 GTTGCTGCTGTTATTCTGGGC 60.135 52.381 0.00 0.00 0.00 5.36
3321 3752 4.895889 CCAAGTCAGGAGATATGGTGAGTA 59.104 45.833 0.00 0.00 31.40 2.59
3351 3782 4.937620 TGCTTCACAAGGCAAAGACTATAG 59.062 41.667 0.00 0.00 35.40 1.31
3507 3938 6.442513 AGTGAAAAACTGGAGAAGAAACAG 57.557 37.500 0.00 0.00 37.88 3.16
3555 4013 5.300969 CATGTTGCTTGTACATGCTTAGT 57.699 39.130 27.83 13.32 44.30 2.24
3556 4014 5.327091 CATGTTGCTTGTACATGCTTAGTC 58.673 41.667 27.83 16.21 44.30 2.59
3557 4015 4.641396 TGTTGCTTGTACATGCTTAGTCT 58.359 39.130 27.83 0.00 33.23 3.24
3558 4016 5.789521 TGTTGCTTGTACATGCTTAGTCTA 58.210 37.500 27.83 8.92 33.23 2.59
3559 4017 6.406370 TGTTGCTTGTACATGCTTAGTCTAT 58.594 36.000 27.83 0.00 33.23 1.98
3560 4018 6.878923 TGTTGCTTGTACATGCTTAGTCTATT 59.121 34.615 27.83 0.00 33.23 1.73
3561 4019 7.064609 TGTTGCTTGTACATGCTTAGTCTATTC 59.935 37.037 27.83 10.88 33.23 1.75
3562 4020 6.049149 TGCTTGTACATGCTTAGTCTATTCC 58.951 40.000 27.83 2.31 33.23 3.01
3563 4021 6.127054 TGCTTGTACATGCTTAGTCTATTCCT 60.127 38.462 27.83 0.00 33.23 3.36
3564 4022 7.069455 TGCTTGTACATGCTTAGTCTATTCCTA 59.931 37.037 27.83 6.05 33.23 2.94
3565 4023 7.926555 GCTTGTACATGCTTAGTCTATTCCTAA 59.073 37.037 22.71 0.00 0.00 2.69
3566 4024 9.469807 CTTGTACATGCTTAGTCTATTCCTAAG 57.530 37.037 0.00 0.00 42.72 2.18
3567 4025 8.762481 TGTACATGCTTAGTCTATTCCTAAGA 57.238 34.615 10.52 0.00 42.54 2.10
3568 4026 9.368416 TGTACATGCTTAGTCTATTCCTAAGAT 57.632 33.333 10.52 0.87 42.54 2.40
3571 4029 8.928448 ACATGCTTAGTCTATTCCTAAGATTGA 58.072 33.333 10.52 0.00 42.54 2.57
3572 4030 9.421806 CATGCTTAGTCTATTCCTAAGATTGAG 57.578 37.037 10.52 0.00 42.54 3.02
3573 4031 8.768501 TGCTTAGTCTATTCCTAAGATTGAGA 57.231 34.615 10.52 0.00 42.54 3.27
3574 4032 9.373450 TGCTTAGTCTATTCCTAAGATTGAGAT 57.627 33.333 10.52 0.00 42.54 2.75
3772 4230 9.455847 CTTTCATTGCTGGCTATAACTAATTTC 57.544 33.333 0.00 0.00 0.00 2.17
3975 4433 4.265073 ACAGATCTGGCCTGTTTCATAAC 58.735 43.478 26.08 0.00 41.68 1.89
4002 4461 5.761234 AGTACGGAACACAGATAAGCAAAAA 59.239 36.000 0.00 0.00 0.00 1.94
4017 4476 3.803778 AGCAAAAATGCTACAGTGTTTGC 59.196 39.130 15.51 15.51 46.97 3.68
4021 4480 3.648339 AATGCTACAGTGTTTGCCTTG 57.352 42.857 0.00 0.00 0.00 3.61
4061 4520 8.414778 AGGTAGGAAGATAGATGAACTAAAACG 58.585 37.037 0.00 0.00 34.56 3.60
4083 4543 1.698506 AACCATGAAGACCCGCAAAA 58.301 45.000 0.00 0.00 0.00 2.44
4084 4544 1.247567 ACCATGAAGACCCGCAAAAG 58.752 50.000 0.00 0.00 0.00 2.27
4113 4573 4.924305 ACTGTAACCGTGAAGACTGTAA 57.076 40.909 0.00 0.00 0.00 2.41
4120 4580 3.000727 CCGTGAAGACTGTAAATGGTCC 58.999 50.000 0.00 0.00 33.39 4.46
4145 4605 6.320672 CAGGGTTAGAATTCTTGCATTGATCT 59.679 38.462 14.36 0.00 0.00 2.75
4152 4612 7.426410 AGAATTCTTGCATTGATCTGCTAATG 58.574 34.615 0.88 4.20 42.75 1.90
4341 4801 1.477700 CCAGAGAGTGAGAGCTTGAGG 59.522 57.143 0.00 0.00 0.00 3.86
4391 4851 0.723414 GATGCACCATGACACGTCAG 59.277 55.000 6.01 0.00 43.61 3.51
4549 5009 0.112995 TTTTGCAGATCCAGGGCACT 59.887 50.000 0.00 0.00 37.26 4.40
4585 5045 0.107848 GGCTAGTTGTGGCCGTATGT 60.108 55.000 0.00 0.00 41.08 2.29
4898 5358 2.654896 TGAGGAGCCTAGCCTGGATATA 59.345 50.000 0.00 0.00 35.44 0.86
4916 5387 8.521170 TGGATATAGATATAGGTTGTTCCTCG 57.479 38.462 0.00 0.00 44.42 4.63
4929 5400 2.202987 CCTCGGGAGCAGTGATGC 60.203 66.667 0.00 0.00 0.00 3.91
4999 5470 4.459685 TGGAGAGCTGTGTCTCTTAGTAAC 59.540 45.833 0.00 0.00 43.05 2.50
5023 5494 7.545489 ACTGGTAGCTCTGTAACTGTATAAAC 58.455 38.462 0.00 0.00 0.00 2.01
5029 5500 5.647589 CTCTGTAACTGTATAAACGCAGGA 58.352 41.667 0.00 0.00 37.07 3.86
5062 5534 1.668628 CGTCCAGCCAAAAATTTCGGG 60.669 52.381 8.30 6.29 0.00 5.14
5234 5706 6.046593 TCTGTCGTGTCTCAAATTAGTTGTT 58.953 36.000 0.00 0.00 38.47 2.83
5237 5709 7.184106 TGTCGTGTCTCAAATTAGTTGTTTTC 58.816 34.615 0.00 0.00 38.47 2.29
5244 5716 9.233232 GTCTCAAATTAGTTGTTTTCGATTTGT 57.767 29.630 0.00 0.00 38.47 2.83
5275 5751 9.988350 GGATATACTTAACACAAAACATGTCTG 57.012 33.333 0.00 2.27 41.46 3.51
5379 5855 8.020819 CACACTTCTTTTGAAATAAATAGCGGA 58.979 33.333 0.00 0.00 38.07 5.54
5393 5869 4.182132 CGGAAGCAGCTCAGAGTG 57.818 61.111 0.00 0.00 0.00 3.51
5394 5870 1.588597 CGGAAGCAGCTCAGAGTGA 59.411 57.895 0.00 0.00 0.00 3.41
5395 5871 0.458197 CGGAAGCAGCTCAGAGTGAG 60.458 60.000 0.00 0.00 46.90 3.51
5396 5872 0.108233 GGAAGCAGCTCAGAGTGAGG 60.108 60.000 0.00 0.00 44.43 3.86
5397 5873 0.108233 GAAGCAGCTCAGAGTGAGGG 60.108 60.000 0.00 0.00 44.43 4.30
5398 5874 2.125188 GCAGCTCAGAGTGAGGGC 60.125 66.667 6.09 0.00 44.43 5.19
5399 5875 2.658064 GCAGCTCAGAGTGAGGGCT 61.658 63.158 6.09 0.00 44.43 5.19
5400 5876 1.981636 CAGCTCAGAGTGAGGGCTT 59.018 57.895 6.09 0.00 44.43 4.35
5401 5877 0.324285 CAGCTCAGAGTGAGGGCTTT 59.676 55.000 6.09 0.00 44.43 3.51
5402 5878 1.063183 AGCTCAGAGTGAGGGCTTTT 58.937 50.000 6.09 0.00 44.43 2.27
5403 5879 1.163554 GCTCAGAGTGAGGGCTTTTG 58.836 55.000 6.09 0.00 44.43 2.44
5404 5880 1.818642 CTCAGAGTGAGGGCTTTTGG 58.181 55.000 0.00 0.00 40.71 3.28
5405 5881 0.250901 TCAGAGTGAGGGCTTTTGGC 60.251 55.000 0.00 0.00 45.19 4.52
5413 5889 4.193334 GGCTTTTGGCGGGCGATC 62.193 66.667 0.00 0.00 42.94 3.69
5414 5890 3.134127 GCTTTTGGCGGGCGATCT 61.134 61.111 0.00 0.00 0.00 2.75
5415 5891 2.700773 GCTTTTGGCGGGCGATCTT 61.701 57.895 0.00 0.00 0.00 2.40
5416 5892 1.429423 CTTTTGGCGGGCGATCTTC 59.571 57.895 0.00 0.00 0.00 2.87
5417 5893 1.302913 TTTTGGCGGGCGATCTTCA 60.303 52.632 0.00 0.00 0.00 3.02
5418 5894 0.679640 TTTTGGCGGGCGATCTTCAT 60.680 50.000 0.00 0.00 0.00 2.57
5419 5895 1.375853 TTTGGCGGGCGATCTTCATG 61.376 55.000 0.00 0.00 0.00 3.07
5420 5896 2.974698 GGCGGGCGATCTTCATGG 60.975 66.667 0.00 0.00 0.00 3.66
5421 5897 2.108976 GCGGGCGATCTTCATGGA 59.891 61.111 0.00 0.00 0.00 3.41
5422 5898 1.958205 GCGGGCGATCTTCATGGAG 60.958 63.158 0.00 0.00 0.00 3.86
5423 5899 1.301244 CGGGCGATCTTCATGGAGG 60.301 63.158 0.00 0.00 0.00 4.30
5424 5900 1.832912 GGGCGATCTTCATGGAGGT 59.167 57.895 0.00 0.00 0.00 3.85
5425 5901 0.533755 GGGCGATCTTCATGGAGGTG 60.534 60.000 0.00 0.00 0.00 4.00
5426 5902 0.533755 GGCGATCTTCATGGAGGTGG 60.534 60.000 0.00 0.00 0.00 4.61
5427 5903 0.465705 GCGATCTTCATGGAGGTGGA 59.534 55.000 0.00 0.00 0.00 4.02
5428 5904 1.071385 GCGATCTTCATGGAGGTGGAT 59.929 52.381 0.00 0.00 0.00 3.41
5429 5905 2.763933 CGATCTTCATGGAGGTGGATG 58.236 52.381 0.00 0.00 0.00 3.51
5430 5906 2.103771 CGATCTTCATGGAGGTGGATGT 59.896 50.000 0.00 0.00 0.00 3.06
5431 5907 3.432749 CGATCTTCATGGAGGTGGATGTT 60.433 47.826 0.00 0.00 0.00 2.71
5432 5908 4.530875 GATCTTCATGGAGGTGGATGTTT 58.469 43.478 0.00 0.00 0.00 2.83
5433 5909 4.387026 TCTTCATGGAGGTGGATGTTTT 57.613 40.909 0.00 0.00 0.00 2.43
5434 5910 5.512942 TCTTCATGGAGGTGGATGTTTTA 57.487 39.130 0.00 0.00 0.00 1.52
5435 5911 5.886609 TCTTCATGGAGGTGGATGTTTTAA 58.113 37.500 0.00 0.00 0.00 1.52
5436 5912 6.310941 TCTTCATGGAGGTGGATGTTTTAAA 58.689 36.000 0.00 0.00 0.00 1.52
5437 5913 6.780031 TCTTCATGGAGGTGGATGTTTTAAAA 59.220 34.615 0.00 0.00 0.00 1.52
5438 5914 6.985653 TCATGGAGGTGGATGTTTTAAAAA 57.014 33.333 1.31 0.00 0.00 1.94
5503 5979 9.787532 AAAAATTTCTACACATTCGTATGGATG 57.212 29.630 6.98 1.29 36.01 3.51
5504 5980 8.506168 AAATTTCTACACATTCGTATGGATGT 57.494 30.769 2.73 2.73 36.01 3.06
5505 5981 9.607988 AAATTTCTACACATTCGTATGGATGTA 57.392 29.630 8.60 6.23 36.01 2.29
5506 5982 9.778741 AATTTCTACACATTCGTATGGATGTAT 57.221 29.630 8.60 0.05 36.01 2.29
5507 5983 9.778741 ATTTCTACACATTCGTATGGATGTATT 57.221 29.630 8.60 2.21 36.01 1.89
5508 5984 8.812147 TTCTACACATTCGTATGGATGTATTC 57.188 34.615 8.60 0.00 36.01 1.75
5509 5985 8.178313 TCTACACATTCGTATGGATGTATTCT 57.822 34.615 8.60 0.00 36.01 2.40
5510 5986 9.292195 TCTACACATTCGTATGGATGTATTCTA 57.708 33.333 8.60 0.00 36.01 2.10
5511 5987 9.343103 CTACACATTCGTATGGATGTATTCTAC 57.657 37.037 8.60 0.00 36.01 2.59
5512 5988 7.722363 ACACATTCGTATGGATGTATTCTACA 58.278 34.615 8.60 0.00 38.37 2.74
5513 5989 8.367911 ACACATTCGTATGGATGTATTCTACAT 58.632 33.333 8.60 0.00 42.11 2.29
5514 5990 8.650714 CACATTCGTATGGATGTATTCTACATG 58.349 37.037 8.60 0.00 40.87 3.21
5515 5991 8.367911 ACATTCGTATGGATGTATTCTACATGT 58.632 33.333 7.11 2.69 40.87 3.21
5551 6027 8.334263 TCATAACAAAATACATTGTGCTGAGA 57.666 30.769 0.00 0.00 42.49 3.27
5552 6028 8.453320 TCATAACAAAATACATTGTGCTGAGAG 58.547 33.333 0.00 0.00 42.49 3.20
5553 6029 5.051891 ACAAAATACATTGTGCTGAGAGC 57.948 39.130 0.00 0.00 41.78 4.09
5554 6030 4.763793 ACAAAATACATTGTGCTGAGAGCT 59.236 37.500 0.00 0.00 41.78 4.09
5555 6031 5.939883 ACAAAATACATTGTGCTGAGAGCTA 59.060 36.000 0.00 0.00 41.78 3.32
5556 6032 6.128172 ACAAAATACATTGTGCTGAGAGCTAC 60.128 38.462 0.00 0.00 41.78 3.58
5557 6033 4.743057 ATACATTGTGCTGAGAGCTACA 57.257 40.909 0.00 0.00 42.97 2.74
5558 6034 2.693069 ACATTGTGCTGAGAGCTACAC 58.307 47.619 0.00 0.00 42.97 2.90
5559 6035 2.037641 ACATTGTGCTGAGAGCTACACA 59.962 45.455 0.00 0.00 42.97 3.72
5561 6037 2.908688 TGTGCTGAGAGCTACACAAA 57.091 45.000 0.00 0.00 42.97 2.83
5562 6038 3.192541 TGTGCTGAGAGCTACACAAAA 57.807 42.857 0.00 0.00 42.97 2.44
5563 6039 3.540617 TGTGCTGAGAGCTACACAAAAA 58.459 40.909 0.00 0.00 42.97 1.94
5586 6062 9.696917 AAAAAGAGAAAATCGTGCATTTCTAAT 57.303 25.926 11.93 3.36 43.86 1.73
5588 6064 9.994432 AAAGAGAAAATCGTGCATTTCTAATAG 57.006 29.630 11.93 0.00 43.86 1.73
5589 6065 7.634522 AGAGAAAATCGTGCATTTCTAATAGC 58.365 34.615 11.93 1.84 43.86 2.97
5590 6066 6.422223 AGAAAATCGTGCATTTCTAATAGCG 58.578 36.000 10.56 0.00 42.47 4.26
5591 6067 5.984233 AAATCGTGCATTTCTAATAGCGA 57.016 34.783 0.00 0.00 27.18 4.93
5592 6068 5.984233 AATCGTGCATTTCTAATAGCGAA 57.016 34.783 0.00 0.00 0.00 4.70
5593 6069 4.772046 TCGTGCATTTCTAATAGCGAAC 57.228 40.909 0.00 0.00 0.00 3.95
5594 6070 4.177783 TCGTGCATTTCTAATAGCGAACA 58.822 39.130 0.00 0.00 0.00 3.18
5595 6071 4.267690 TCGTGCATTTCTAATAGCGAACAG 59.732 41.667 0.00 0.00 0.00 3.16
5596 6072 4.032900 CGTGCATTTCTAATAGCGAACAGT 59.967 41.667 0.00 0.00 0.00 3.55
5597 6073 5.258622 GTGCATTTCTAATAGCGAACAGTG 58.741 41.667 0.00 0.00 0.00 3.66
5598 6074 4.935205 TGCATTTCTAATAGCGAACAGTGT 59.065 37.500 0.00 0.00 0.00 3.55
5599 6075 5.411361 TGCATTTCTAATAGCGAACAGTGTT 59.589 36.000 8.61 8.61 0.00 3.32
5600 6076 6.072728 TGCATTTCTAATAGCGAACAGTGTTT 60.073 34.615 10.45 0.00 0.00 2.83
5601 6077 6.249260 GCATTTCTAATAGCGAACAGTGTTTG 59.751 38.462 17.60 17.60 0.00 2.93
5602 6078 4.921470 TCTAATAGCGAACAGTGTTTGC 57.079 40.909 32.49 32.49 0.00 3.68
5603 6079 4.311606 TCTAATAGCGAACAGTGTTTGCA 58.688 39.130 37.56 27.10 0.00 4.08
5604 6080 2.969443 ATAGCGAACAGTGTTTGCAC 57.031 45.000 37.56 18.35 45.57 4.57
5624 6100 3.193157 CTGCTCATCAGTTTGAAACCG 57.807 47.619 4.14 0.00 38.02 4.44
5625 6101 1.266718 TGCTCATCAGTTTGAAACCGC 59.733 47.619 4.14 0.00 0.00 5.68
5626 6102 1.725931 GCTCATCAGTTTGAAACCGCG 60.726 52.381 4.14 0.00 0.00 6.46
5627 6103 1.798223 CTCATCAGTTTGAAACCGCGA 59.202 47.619 8.23 0.00 0.00 5.87
5628 6104 2.416547 CTCATCAGTTTGAAACCGCGAT 59.583 45.455 8.23 2.25 0.00 4.58
5629 6105 2.811431 TCATCAGTTTGAAACCGCGATT 59.189 40.909 8.23 1.20 0.00 3.34
5630 6106 3.252215 TCATCAGTTTGAAACCGCGATTT 59.748 39.130 8.23 0.86 0.00 2.17
5631 6107 2.993545 TCAGTTTGAAACCGCGATTTG 58.006 42.857 1.37 0.00 0.00 2.32
5632 6108 2.356382 TCAGTTTGAAACCGCGATTTGT 59.644 40.909 1.37 0.00 0.00 2.83
5633 6109 3.560481 TCAGTTTGAAACCGCGATTTGTA 59.440 39.130 1.37 0.00 0.00 2.41
5634 6110 3.906008 CAGTTTGAAACCGCGATTTGTAG 59.094 43.478 1.37 0.00 0.00 2.74
5635 6111 2.604969 TTGAAACCGCGATTTGTAGC 57.395 45.000 1.37 0.00 0.00 3.58
5636 6112 1.803334 TGAAACCGCGATTTGTAGCT 58.197 45.000 1.37 0.00 0.00 3.32
5637 6113 1.730064 TGAAACCGCGATTTGTAGCTC 59.270 47.619 1.37 0.00 0.00 4.09
5638 6114 2.000447 GAAACCGCGATTTGTAGCTCT 59.000 47.619 1.37 0.00 0.00 4.09
5639 6115 1.641577 AACCGCGATTTGTAGCTCTC 58.358 50.000 8.23 0.00 0.00 3.20
5640 6116 0.530744 ACCGCGATTTGTAGCTCTCA 59.469 50.000 8.23 0.00 0.00 3.27
5641 6117 1.137086 ACCGCGATTTGTAGCTCTCAT 59.863 47.619 8.23 0.00 0.00 2.90
5642 6118 1.789464 CCGCGATTTGTAGCTCTCATC 59.211 52.381 8.23 0.00 0.00 2.92
5643 6119 2.463876 CGCGATTTGTAGCTCTCATCA 58.536 47.619 0.00 0.00 0.00 3.07
5644 6120 3.055591 CGCGATTTGTAGCTCTCATCAT 58.944 45.455 0.00 0.00 0.00 2.45
5645 6121 4.229876 CGCGATTTGTAGCTCTCATCATA 58.770 43.478 0.00 0.00 0.00 2.15
5646 6122 4.681483 CGCGATTTGTAGCTCTCATCATAA 59.319 41.667 0.00 0.00 0.00 1.90
5647 6123 5.347093 CGCGATTTGTAGCTCTCATCATAAT 59.653 40.000 0.00 0.00 0.00 1.28
5648 6124 6.532311 GCGATTTGTAGCTCTCATCATAATG 58.468 40.000 0.00 0.00 0.00 1.90
5649 6125 6.146837 GCGATTTGTAGCTCTCATCATAATGT 59.853 38.462 0.00 0.00 34.32 2.71
5650 6126 7.329471 GCGATTTGTAGCTCTCATCATAATGTA 59.671 37.037 0.00 0.00 34.32 2.29
5651 6127 9.363763 CGATTTGTAGCTCTCATCATAATGTAT 57.636 33.333 0.00 0.00 34.32 2.29
5686 6162 7.792374 GTAGAATACATCCATGTTGACATGT 57.208 36.000 19.50 0.00 45.33 3.21
5687 6163 8.887036 GTAGAATACATCCATGTTGACATGTA 57.113 34.615 19.50 7.49 45.33 2.29
5688 6164 9.494271 GTAGAATACATCCATGTTGACATGTAT 57.506 33.333 19.50 9.34 45.33 2.29
5690 6166 8.212995 AGAATACATCCATGTTGACATGTATGA 58.787 33.333 26.37 16.10 46.91 2.15
5691 6167 8.929260 AATACATCCATGTTGACATGTATGAT 57.071 30.769 26.37 17.24 46.91 2.45
5692 6168 8.929260 ATACATCCATGTTGACATGTATGATT 57.071 30.769 26.37 15.08 46.91 2.57
5693 6169 7.649533 ACATCCATGTTGACATGTATGATTT 57.350 32.000 26.37 12.64 46.91 2.17
5694 6170 8.070034 ACATCCATGTTGACATGTATGATTTT 57.930 30.769 26.37 9.48 46.91 1.82
5695 6171 8.533657 ACATCCATGTTGACATGTATGATTTTT 58.466 29.630 26.37 9.20 46.91 1.94
5760 6236 5.736951 TTTCAAAATACCCACCTTCATGG 57.263 39.130 0.00 0.00 42.93 3.66
5761 6237 4.666412 TCAAAATACCCACCTTCATGGA 57.334 40.909 0.00 0.00 43.02 3.41
5762 6238 4.599041 TCAAAATACCCACCTTCATGGAG 58.401 43.478 0.00 0.00 43.02 3.86
5763 6239 3.669939 AAATACCCACCTTCATGGAGG 57.330 47.619 19.40 19.40 43.02 4.30
5837 6313 3.976339 CATCTCCATGGAGGTCGAC 57.024 57.895 35.95 7.13 42.20 4.20
5838 6314 0.390860 CATCTCCATGGAGGTCGACC 59.609 60.000 35.95 27.67 42.20 4.79
5839 6315 1.109920 ATCTCCATGGAGGTCGACCG 61.110 60.000 35.95 13.86 42.20 4.79
5840 6316 3.432051 CTCCATGGAGGTCGACCGC 62.432 68.421 31.14 28.12 42.08 5.68
5860 6336 3.070429 CCGTTGGCATTTTGCTATCTC 57.930 47.619 0.00 0.00 44.28 2.75
5861 6337 2.423185 CCGTTGGCATTTTGCTATCTCA 59.577 45.455 0.00 0.00 44.28 3.27
5862 6338 3.067180 CCGTTGGCATTTTGCTATCTCAT 59.933 43.478 0.00 0.00 44.28 2.90
5863 6339 4.440525 CCGTTGGCATTTTGCTATCTCATT 60.441 41.667 0.00 0.00 44.28 2.57
5864 6340 4.501559 CGTTGGCATTTTGCTATCTCATTG 59.498 41.667 0.00 0.00 44.28 2.82
5865 6341 5.653507 GTTGGCATTTTGCTATCTCATTGA 58.346 37.500 0.00 0.00 44.28 2.57
5866 6342 5.252969 TGGCATTTTGCTATCTCATTGAC 57.747 39.130 0.00 0.00 44.28 3.18
5867 6343 4.951715 TGGCATTTTGCTATCTCATTGACT 59.048 37.500 0.00 0.00 44.28 3.41
5868 6344 5.163591 TGGCATTTTGCTATCTCATTGACTG 60.164 40.000 0.00 0.00 44.28 3.51
5869 6345 5.163581 GGCATTTTGCTATCTCATTGACTGT 60.164 40.000 0.00 0.00 44.28 3.55
5870 6346 6.327934 GCATTTTGCTATCTCATTGACTGTT 58.672 36.000 0.00 0.00 40.96 3.16
5871 6347 6.471519 GCATTTTGCTATCTCATTGACTGTTC 59.528 38.462 0.00 0.00 40.96 3.18
5872 6348 7.532571 CATTTTGCTATCTCATTGACTGTTCA 58.467 34.615 0.00 0.00 0.00 3.18
5873 6349 7.692460 TTTTGCTATCTCATTGACTGTTCAT 57.308 32.000 0.00 0.00 0.00 2.57
5874 6350 8.791327 TTTTGCTATCTCATTGACTGTTCATA 57.209 30.769 0.00 0.00 0.00 2.15
5875 6351 8.791327 TTTGCTATCTCATTGACTGTTCATAA 57.209 30.769 0.00 0.00 0.00 1.90
5876 6352 8.969260 TTGCTATCTCATTGACTGTTCATAAT 57.031 30.769 0.00 0.00 0.00 1.28
5878 6354 9.702494 TGCTATCTCATTGACTGTTCATAATAG 57.298 33.333 0.00 0.00 0.00 1.73
5879 6355 9.703892 GCTATCTCATTGACTGTTCATAATAGT 57.296 33.333 0.00 0.00 35.39 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 272 9.495572 TGTCGCCAAAACATATATGATTACATA 57.504 29.630 19.63 0.00 42.18 2.29
89 369 1.792006 CGCGGGAATAAGTATGGGAC 58.208 55.000 0.00 0.00 0.00 4.46
96 376 0.739813 GTGAGTGCGCGGGAATAAGT 60.740 55.000 8.83 0.00 0.00 2.24
98 378 0.459585 GAGTGAGTGCGCGGGAATAA 60.460 55.000 8.83 0.00 0.00 1.40
108 388 1.634702 GTCGGATGAAGAGTGAGTGC 58.365 55.000 0.00 0.00 0.00 4.40
110 390 0.811915 CCGTCGGATGAAGAGTGAGT 59.188 55.000 4.91 0.00 0.00 3.41
111 391 0.526524 GCCGTCGGATGAAGAGTGAG 60.527 60.000 17.49 0.00 0.00 3.51
112 392 1.511305 GCCGTCGGATGAAGAGTGA 59.489 57.895 17.49 0.00 0.00 3.41
113 393 1.519455 GGCCGTCGGATGAAGAGTG 60.519 63.158 17.49 0.00 0.00 3.51
114 394 1.982395 TGGCCGTCGGATGAAGAGT 60.982 57.895 17.49 0.00 0.00 3.24
115 395 1.519455 GTGGCCGTCGGATGAAGAG 60.519 63.158 17.49 0.00 0.00 2.85
116 396 2.279810 TGTGGCCGTCGGATGAAGA 61.280 57.895 17.49 0.00 0.00 2.87
117 397 2.100631 GTGTGGCCGTCGGATGAAG 61.101 63.158 17.49 0.00 0.00 3.02
118 398 2.047655 GTGTGGCCGTCGGATGAA 60.048 61.111 17.49 0.00 0.00 2.57
119 399 4.077184 GGTGTGGCCGTCGGATGA 62.077 66.667 17.49 0.00 0.00 2.92
120 400 4.386951 TGGTGTGGCCGTCGGATG 62.387 66.667 17.49 0.00 41.21 3.51
121 401 4.082523 CTGGTGTGGCCGTCGGAT 62.083 66.667 17.49 0.00 41.21 4.18
125 405 4.295119 ACGACTGGTGTGGCCGTC 62.295 66.667 0.00 0.00 41.21 4.79
126 406 4.295119 GACGACTGGTGTGGCCGT 62.295 66.667 0.00 0.00 41.21 5.68
127 407 3.589654 ATGACGACTGGTGTGGCCG 62.590 63.158 0.00 0.00 41.21 6.13
128 408 0.889186 AAATGACGACTGGTGTGGCC 60.889 55.000 0.00 0.00 37.90 5.36
129 409 0.517316 GAAATGACGACTGGTGTGGC 59.483 55.000 0.00 0.00 0.00 5.01
130 410 1.531149 GTGAAATGACGACTGGTGTGG 59.469 52.381 0.00 0.00 0.00 4.17
131 411 2.209273 TGTGAAATGACGACTGGTGTG 58.791 47.619 0.00 0.00 0.00 3.82
132 412 2.613026 TGTGAAATGACGACTGGTGT 57.387 45.000 0.00 0.00 0.00 4.16
133 413 2.160219 CCATGTGAAATGACGACTGGTG 59.840 50.000 0.00 0.00 0.00 4.17
134 414 2.224523 ACCATGTGAAATGACGACTGGT 60.225 45.455 0.00 0.00 0.00 4.00
135 415 2.426522 ACCATGTGAAATGACGACTGG 58.573 47.619 0.00 0.00 0.00 4.00
136 416 5.111989 AGATACCATGTGAAATGACGACTG 58.888 41.667 0.00 0.00 0.00 3.51
137 417 5.344743 AGATACCATGTGAAATGACGACT 57.655 39.130 0.00 0.00 0.00 4.18
138 418 6.422776 AAAGATACCATGTGAAATGACGAC 57.577 37.500 0.00 0.00 0.00 4.34
139 419 6.093495 GGAAAAGATACCATGTGAAATGACGA 59.907 38.462 0.00 0.00 0.00 4.20
140 420 6.128035 TGGAAAAGATACCATGTGAAATGACG 60.128 38.462 0.00 0.00 0.00 4.35
141 421 7.156876 TGGAAAAGATACCATGTGAAATGAC 57.843 36.000 0.00 0.00 0.00 3.06
142 422 6.127647 GCTGGAAAAGATACCATGTGAAATGA 60.128 38.462 0.00 0.00 35.54 2.57
143 423 6.038356 GCTGGAAAAGATACCATGTGAAATG 58.962 40.000 0.00 0.00 35.54 2.32
144 424 5.127682 GGCTGGAAAAGATACCATGTGAAAT 59.872 40.000 0.00 0.00 35.54 2.17
145 425 4.462483 GGCTGGAAAAGATACCATGTGAAA 59.538 41.667 0.00 0.00 35.54 2.69
146 426 4.016444 GGCTGGAAAAGATACCATGTGAA 58.984 43.478 0.00 0.00 35.54 3.18
147 427 3.010027 TGGCTGGAAAAGATACCATGTGA 59.990 43.478 0.00 0.00 35.54 3.58
148 428 3.355378 TGGCTGGAAAAGATACCATGTG 58.645 45.455 0.00 0.00 35.54 3.21
149 429 3.737559 TGGCTGGAAAAGATACCATGT 57.262 42.857 0.00 0.00 35.54 3.21
150 430 5.404466 TTTTGGCTGGAAAAGATACCATG 57.596 39.130 0.00 0.00 35.54 3.66
151 431 6.625532 AATTTTGGCTGGAAAAGATACCAT 57.374 33.333 0.00 0.00 35.54 3.55
152 432 6.951198 TCTAATTTTGGCTGGAAAAGATACCA 59.049 34.615 0.00 0.00 34.81 3.25
165 445 2.890945 GGGTGTGTGTCTAATTTTGGCT 59.109 45.455 0.00 0.00 0.00 4.75
168 448 4.795962 GCTTGGGGTGTGTGTCTAATTTTG 60.796 45.833 0.00 0.00 0.00 2.44
180 460 0.888736 TGAATCGTGCTTGGGGTGTG 60.889 55.000 0.00 0.00 0.00 3.82
181 461 0.038166 ATGAATCGTGCTTGGGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
182 462 0.734889 GATGAATCGTGCTTGGGGTG 59.265 55.000 0.00 0.00 0.00 4.61
183 463 0.394352 GGATGAATCGTGCTTGGGGT 60.394 55.000 0.00 0.00 0.00 4.95
184 464 0.394216 TGGATGAATCGTGCTTGGGG 60.394 55.000 0.00 0.00 0.00 4.96
218 499 1.647545 CGCAGGCGACAATGGACAAT 61.648 55.000 8.15 0.00 42.83 2.71
219 500 2.324330 CGCAGGCGACAATGGACAA 61.324 57.895 8.15 0.00 42.83 3.18
252 533 3.633986 CCACCTTGATCATCTAAAAGGGC 59.366 47.826 12.42 0.00 42.93 5.19
321 602 9.559958 GTGACAATAAAGTTATTTGGTCTGATG 57.440 33.333 12.10 0.00 32.04 3.07
333 614 9.793259 AGGAGATCAAAAGTGACAATAAAGTTA 57.207 29.630 0.00 0.00 36.31 2.24
334 615 8.697507 AGGAGATCAAAAGTGACAATAAAGTT 57.302 30.769 0.00 0.00 36.31 2.66
336 617 9.403110 CAAAGGAGATCAAAAGTGACAATAAAG 57.597 33.333 0.00 0.00 36.31 1.85
337 618 9.130661 TCAAAGGAGATCAAAAGTGACAATAAA 57.869 29.630 0.00 0.00 36.31 1.40
340 621 7.771927 ATCAAAGGAGATCAAAAGTGACAAT 57.228 32.000 0.00 0.00 36.31 2.71
341 622 7.587037 AATCAAAGGAGATCAAAAGTGACAA 57.413 32.000 0.00 0.00 36.31 3.18
343 624 7.428826 ACAAATCAAAGGAGATCAAAAGTGAC 58.571 34.615 0.00 0.00 36.31 3.67
344 625 7.587037 ACAAATCAAAGGAGATCAAAAGTGA 57.413 32.000 0.00 0.00 38.41 3.41
346 627 7.944554 TCCTACAAATCAAAGGAGATCAAAAGT 59.055 33.333 0.00 0.00 34.46 2.66
391 674 9.131791 GGCTAGAAAAATTCAATAGGGAACATA 57.868 33.333 0.00 0.00 0.00 2.29
393 676 6.379988 GGGCTAGAAAAATTCAATAGGGAACA 59.620 38.462 0.00 0.00 0.00 3.18
395 681 6.741724 AGGGCTAGAAAAATTCAATAGGGAA 58.258 36.000 0.00 0.00 0.00 3.97
397 683 7.423844 AAAGGGCTAGAAAAATTCAATAGGG 57.576 36.000 0.00 0.00 0.00 3.53
398 684 7.196331 CGAAAGGGCTAGAAAAATTCAATAGG 58.804 38.462 0.00 0.00 0.00 2.57
400 686 6.405397 GGCGAAAGGGCTAGAAAAATTCAATA 60.405 38.462 0.00 0.00 38.40 1.90
403 689 3.192633 GGCGAAAGGGCTAGAAAAATTCA 59.807 43.478 0.00 0.00 38.40 2.57
440 727 1.134491 GCAGCTACCACTAACCGGAAT 60.134 52.381 9.46 0.00 0.00 3.01
456 743 2.159517 CGGTTTTGAGTAATGGAGCAGC 60.160 50.000 0.00 0.00 0.00 5.25
488 775 6.752335 TTTTGTTTCTTGCGATGATGAAAG 57.248 33.333 0.00 0.00 0.00 2.62
527 814 3.499737 GGCGCACCGAACAGATGG 61.500 66.667 10.83 0.00 0.00 3.51
528 815 3.499737 GGGCGCACCGAACAGATG 61.500 66.667 10.83 0.00 36.48 2.90
554 846 0.597568 TACGCTCCGAAACTTCCGAA 59.402 50.000 0.00 0.00 0.00 4.30
558 850 3.054878 TCTTTGTACGCTCCGAAACTTC 58.945 45.455 0.00 0.00 0.00 3.01
793 1088 2.699938 AAGGGGGTGGGCCTATGG 60.700 66.667 4.53 0.00 34.45 2.74
795 1090 2.369706 GGAAGGGGGTGGGCCTAT 60.370 66.667 4.53 0.00 34.45 2.57
796 1091 4.771745 GGGAAGGGGGTGGGCCTA 62.772 72.222 4.53 0.00 34.45 3.93
824 1129 1.135660 GCTCCTTTCTTAGCCGTTTGC 60.136 52.381 0.00 0.00 41.71 3.68
907 1213 4.803426 GACTGACTGGAGCGGGCG 62.803 72.222 0.00 0.00 0.00 6.13
908 1214 3.655810 CTGACTGACTGGAGCGGGC 62.656 68.421 0.00 0.00 0.00 6.13
909 1215 2.575993 CTGACTGACTGGAGCGGG 59.424 66.667 0.00 0.00 0.00 6.13
910 1216 2.125753 GCTGACTGACTGGAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
911 1217 2.125753 GGCTGACTGACTGGAGCG 60.126 66.667 0.00 0.00 31.89 5.03
912 1218 1.079266 CTGGCTGACTGACTGGAGC 60.079 63.158 0.00 0.00 0.00 4.70
914 1220 1.527433 CGACTGGCTGACTGACTGGA 61.527 60.000 0.00 0.00 0.00 3.86
915 1221 1.080230 CGACTGGCTGACTGACTGG 60.080 63.158 0.00 0.00 0.00 4.00
916 1222 1.080230 CCGACTGGCTGACTGACTG 60.080 63.158 0.00 0.00 0.00 3.51
917 1223 2.279069 CCCGACTGGCTGACTGACT 61.279 63.158 0.00 0.00 0.00 3.41
944 1250 3.214250 CTATCGCCTCCCTCGCCAC 62.214 68.421 0.00 0.00 0.00 5.01
945 1251 2.912542 CTATCGCCTCCCTCGCCA 60.913 66.667 0.00 0.00 0.00 5.69
946 1252 4.365505 GCTATCGCCTCCCTCGCC 62.366 72.222 0.00 0.00 0.00 5.54
949 1255 1.365633 CTGTGCTATCGCCTCCCTC 59.634 63.158 0.00 0.00 34.43 4.30
950 1256 0.106167 TACTGTGCTATCGCCTCCCT 60.106 55.000 0.00 0.00 34.43 4.20
952 1258 0.744874 TGTACTGTGCTATCGCCTCC 59.255 55.000 0.00 0.00 34.43 4.30
953 1259 1.676529 TCTGTACTGTGCTATCGCCTC 59.323 52.381 0.00 0.00 34.43 4.70
956 1262 1.202302 TGCTCTGTACTGTGCTATCGC 60.202 52.381 22.07 7.05 0.00 4.58
957 1263 2.356069 TCTGCTCTGTACTGTGCTATCG 59.644 50.000 22.07 11.48 0.00 2.92
958 1264 3.243367 CCTCTGCTCTGTACTGTGCTATC 60.243 52.174 22.07 0.90 0.00 2.08
959 1265 2.692557 CCTCTGCTCTGTACTGTGCTAT 59.307 50.000 22.07 0.00 0.00 2.97
960 1266 2.095461 CCTCTGCTCTGTACTGTGCTA 58.905 52.381 22.07 12.57 0.00 3.49
961 1267 0.894141 CCTCTGCTCTGTACTGTGCT 59.106 55.000 22.07 0.00 0.00 4.40
962 1268 0.739112 GCCTCTGCTCTGTACTGTGC 60.739 60.000 16.96 16.96 33.53 4.57
963 1269 0.457509 CGCCTCTGCTCTGTACTGTG 60.458 60.000 0.00 0.00 34.43 3.66
964 1270 1.599606 CCGCCTCTGCTCTGTACTGT 61.600 60.000 0.00 0.00 34.43 3.55
966 1272 2.716017 GCCGCCTCTGCTCTGTACT 61.716 63.158 0.00 0.00 34.43 2.73
967 1273 2.202810 GCCGCCTCTGCTCTGTAC 60.203 66.667 0.00 0.00 34.43 2.90
968 1274 3.826754 CGCCGCCTCTGCTCTGTA 61.827 66.667 0.00 0.00 34.43 2.74
991 1297 4.918201 CTTCCTCATCGCCCGCCC 62.918 72.222 0.00 0.00 0.00 6.13
1270 1576 1.380650 GGAGAGGAAGGAGGAGCGT 60.381 63.158 0.00 0.00 0.00 5.07
1278 1584 2.192263 AGTAAAGCAGGGAGAGGAAGG 58.808 52.381 0.00 0.00 0.00 3.46
1283 1589 3.922171 ATCCAAGTAAAGCAGGGAGAG 57.078 47.619 0.00 0.00 0.00 3.20
1284 1590 3.369471 CGAATCCAAGTAAAGCAGGGAGA 60.369 47.826 0.00 0.00 0.00 3.71
1288 1594 2.678336 GTCCGAATCCAAGTAAAGCAGG 59.322 50.000 0.00 0.00 0.00 4.85
1472 1780 3.435671 CGACAAAAATCCCTAGTGTGACC 59.564 47.826 0.00 0.00 0.00 4.02
1546 1854 4.124851 AGCATAACACGTTAGAGGGAAG 57.875 45.455 0.00 0.00 0.00 3.46
1547 1855 4.951715 TCTAGCATAACACGTTAGAGGGAA 59.048 41.667 0.00 0.00 0.00 3.97
1548 1856 4.529897 TCTAGCATAACACGTTAGAGGGA 58.470 43.478 0.00 0.00 0.00 4.20
1563 1871 1.688772 CTGCAGCCCATTTCTAGCAT 58.311 50.000 0.00 0.00 0.00 3.79
1586 1894 2.472695 TTCACGGAATCAGGAACCTG 57.527 50.000 14.01 14.01 44.86 4.00
1650 1958 3.861276 TCATCACAACAGTAGTACGGG 57.139 47.619 5.41 0.00 0.00 5.28
1732 2040 3.118629 CCTCAGTTACAGAAGCATGCCTA 60.119 47.826 15.66 0.00 0.00 3.93
1743 2078 5.934625 AGTAGCATGTTTTCCTCAGTTACAG 59.065 40.000 0.00 0.00 0.00 2.74
1794 2129 1.460273 AAGCCCCGCGACAAATTTGT 61.460 50.000 23.49 23.49 45.65 2.83
1807 2144 3.945640 TCCCTCATTTTACTAAGCCCC 57.054 47.619 0.00 0.00 0.00 5.80
1816 2153 8.744568 AAAGCAAACAAATTTCCCTCATTTTA 57.255 26.923 0.00 0.00 0.00 1.52
1848 2185 8.611257 CCCCCTCCTAAAATCACACAATATATA 58.389 37.037 0.00 0.00 0.00 0.86
1849 2186 7.470192 CCCCCTCCTAAAATCACACAATATAT 58.530 38.462 0.00 0.00 0.00 0.86
1873 2210 0.108585 TGGCAAGTGACAGTCTTCCC 59.891 55.000 1.31 0.00 0.00 3.97
1957 2294 5.614308 TCTTGCAGTAACCATATGATCAGG 58.386 41.667 3.65 0.00 0.00 3.86
2000 2338 3.576648 CTTAGTCCTGTTCGGTCTCAAC 58.423 50.000 0.00 0.00 33.11 3.18
2005 2343 2.036862 ACAACCTTAGTCCTGTTCGGTC 59.963 50.000 0.00 0.00 0.00 4.79
2038 2376 7.399245 TTTCACTTAAAGTTGTAAGGCAGTT 57.601 32.000 8.64 0.00 35.72 3.16
2047 2385 9.921637 TTTCAGAAACATTTCACTTAAAGTTGT 57.078 25.926 7.10 0.00 39.61 3.32
2125 2465 3.869065 ACAGGATTACATGTAACCACCG 58.131 45.455 25.76 21.22 39.28 4.94
2172 2512 9.480053 AAAAATACAGAAAGACCATCAAATGTG 57.520 29.630 0.00 0.00 0.00 3.21
2247 2587 8.177663 CAGCTCCACATATTAGTTTAAACAGTG 58.822 37.037 20.06 15.58 0.00 3.66
2346 2771 3.181440 CCCTTCTCTTGCCTGCCAATATA 60.181 47.826 0.00 0.00 31.91 0.86
2348 2773 1.064463 CCCTTCTCTTGCCTGCCAATA 60.064 52.381 0.00 0.00 31.91 1.90
2684 3109 6.038714 ACTGCTTTACTGGAAAAGAGAAAGTG 59.961 38.462 8.42 0.00 38.50 3.16
2819 3244 6.144724 GTCTTGTCAGTCATTGTTCAGAGTAC 59.855 42.308 0.00 0.00 0.00 2.73
2826 3251 5.277538 GGTCAAGTCTTGTCAGTCATTGTTC 60.278 44.000 12.30 0.00 0.00 3.18
2834 3259 4.080863 AGTGAAAGGTCAAGTCTTGTCAGT 60.081 41.667 12.30 8.24 34.87 3.41
2864 3289 8.408601 AGGCATAATTTTGAGTAAACAGCATAG 58.591 33.333 0.00 0.00 0.00 2.23
3125 3556 3.333029 TGTGGGTACATGTCACTGATG 57.667 47.619 14.96 0.00 33.04 3.07
3233 3664 1.466856 ATGCTGCATTGGTACCTGTG 58.533 50.000 14.36 12.60 0.00 3.66
3371 3802 5.229423 GCAGTATTTTCTTTTGGCATCACA 58.771 37.500 0.00 0.00 0.00 3.58
3446 3877 2.742589 GTCCCGAAAAGCTTGTCTTAGG 59.257 50.000 14.70 11.94 33.88 2.69
3558 4016 8.428063 CCTGACAACTATCTCAATCTTAGGAAT 58.572 37.037 0.00 0.00 0.00 3.01
3559 4017 7.619698 TCCTGACAACTATCTCAATCTTAGGAA 59.380 37.037 0.00 0.00 0.00 3.36
3560 4018 7.068839 GTCCTGACAACTATCTCAATCTTAGGA 59.931 40.741 0.00 0.00 0.00 2.94
3561 4019 7.069331 AGTCCTGACAACTATCTCAATCTTAGG 59.931 40.741 0.00 0.00 0.00 2.69
3562 4020 7.920151 CAGTCCTGACAACTATCTCAATCTTAG 59.080 40.741 0.00 0.00 0.00 2.18
3563 4021 7.397476 ACAGTCCTGACAACTATCTCAATCTTA 59.603 37.037 0.40 0.00 0.00 2.10
3564 4022 6.212388 ACAGTCCTGACAACTATCTCAATCTT 59.788 38.462 0.40 0.00 0.00 2.40
3565 4023 5.719085 ACAGTCCTGACAACTATCTCAATCT 59.281 40.000 0.40 0.00 0.00 2.40
3566 4024 5.971763 ACAGTCCTGACAACTATCTCAATC 58.028 41.667 0.40 0.00 0.00 2.67
3567 4025 5.481824 TGACAGTCCTGACAACTATCTCAAT 59.518 40.000 0.40 0.00 32.80 2.57
3568 4026 4.832823 TGACAGTCCTGACAACTATCTCAA 59.167 41.667 0.40 0.00 32.80 3.02
3569 4027 4.407365 TGACAGTCCTGACAACTATCTCA 58.593 43.478 0.40 0.00 32.80 3.27
3570 4028 5.126222 TCATGACAGTCCTGACAACTATCTC 59.874 44.000 4.51 0.00 38.57 2.75
3571 4029 5.019470 TCATGACAGTCCTGACAACTATCT 58.981 41.667 4.51 0.00 38.57 1.98
3572 4030 5.105554 ACTCATGACAGTCCTGACAACTATC 60.106 44.000 4.51 0.00 38.57 2.08
3573 4031 4.774726 ACTCATGACAGTCCTGACAACTAT 59.225 41.667 4.51 0.00 38.57 2.12
3574 4032 4.152647 ACTCATGACAGTCCTGACAACTA 58.847 43.478 4.51 0.00 38.57 2.24
3575 4033 2.968574 ACTCATGACAGTCCTGACAACT 59.031 45.455 4.51 0.00 38.57 3.16
3576 4034 3.393089 ACTCATGACAGTCCTGACAAC 57.607 47.619 4.51 0.00 38.57 3.32
3577 4035 4.422073 AAACTCATGACAGTCCTGACAA 57.578 40.909 4.51 0.00 38.57 3.18
3578 4036 4.129380 CAAAACTCATGACAGTCCTGACA 58.871 43.478 4.51 1.37 39.31 3.58
3772 4230 7.385752 TCAGCTTTTCATAAATCTGCAAAAAGG 59.614 33.333 14.51 3.41 37.39 3.11
3975 4433 4.688879 TGCTTATCTGTGTTCCGTACTTTG 59.311 41.667 0.00 0.00 0.00 2.77
4002 4461 1.270550 GCAAGGCAAACACTGTAGCAT 59.729 47.619 8.34 0.00 0.00 3.79
4017 4476 2.762327 ACCTTAATTCAGCATGGCAAGG 59.238 45.455 0.00 0.00 36.61 3.61
4021 4480 3.820557 TCCTACCTTAATTCAGCATGGC 58.179 45.455 0.00 0.00 36.16 4.40
4061 4520 0.035820 TGCGGGTCTTCATGGTTACC 60.036 55.000 0.00 0.00 0.00 2.85
4113 4573 5.264395 CAAGAATTCTAACCCTGGACCATT 58.736 41.667 8.75 0.00 0.00 3.16
4120 4580 5.902613 TCAATGCAAGAATTCTAACCCTG 57.097 39.130 8.75 4.01 0.00 4.45
4152 4612 2.698855 TGCATTTCTACTGGGAGCTC 57.301 50.000 4.71 4.71 0.00 4.09
4391 4851 3.260740 CTCCAACTGTTCTGAGATCAGC 58.739 50.000 17.93 0.00 43.46 4.26
4549 5009 3.102052 AGCCGTCTCGTTTTAAGTGAA 57.898 42.857 0.00 0.00 0.00 3.18
4585 5045 0.041400 CACGCTTTGCAACGATGTCA 60.041 50.000 15.44 0.00 0.00 3.58
4999 5470 6.691818 CGTTTATACAGTTACAGAGCTACCAG 59.308 42.308 0.00 0.00 0.00 4.00
5023 5494 1.272781 GACAGAATCGTCTTCCTGCG 58.727 55.000 0.00 0.00 32.92 5.18
5043 5515 1.343142 ACCCGAAATTTTTGGCTGGAC 59.657 47.619 9.62 0.00 0.00 4.02
5062 5534 5.299279 TCACTGGTTTGAAATTTCTGGAGAC 59.701 40.000 18.64 9.66 0.00 3.36
5202 5674 0.469331 AGACACGACAGAGGTTCCCA 60.469 55.000 0.00 0.00 0.00 4.37
5203 5675 0.244178 GAGACACGACAGAGGTTCCC 59.756 60.000 0.00 0.00 0.00 3.97
5206 5678 3.753294 ATTTGAGACACGACAGAGGTT 57.247 42.857 0.00 0.00 0.00 3.50
5212 5684 6.671614 AAACAACTAATTTGAGACACGACA 57.328 33.333 0.00 0.00 38.73 4.35
5314 5790 2.196502 TATACTCGCTCCGCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
5379 5855 1.981636 CCCTCACTCTGAGCTGCTT 59.018 57.895 2.53 0.00 42.98 3.91
5386 5862 0.250901 GCCAAAAGCCCTCACTCTGA 60.251 55.000 0.00 0.00 34.35 3.27
5389 5865 2.335712 CCGCCAAAAGCCCTCACTC 61.336 63.158 0.00 0.00 38.78 3.51
5390 5866 2.282462 CCGCCAAAAGCCCTCACT 60.282 61.111 0.00 0.00 38.78 3.41
5391 5867 3.373565 CCCGCCAAAAGCCCTCAC 61.374 66.667 0.00 0.00 38.78 3.51
5396 5872 4.193334 GATCGCCCGCCAAAAGCC 62.193 66.667 0.00 0.00 38.78 4.35
5397 5873 2.598619 GAAGATCGCCCGCCAAAAGC 62.599 60.000 0.00 0.00 38.52 3.51
5398 5874 1.305219 TGAAGATCGCCCGCCAAAAG 61.305 55.000 0.00 0.00 0.00 2.27
5399 5875 0.679640 ATGAAGATCGCCCGCCAAAA 60.680 50.000 0.00 0.00 0.00 2.44
5400 5876 1.077787 ATGAAGATCGCCCGCCAAA 60.078 52.632 0.00 0.00 0.00 3.28
5401 5877 1.819208 CATGAAGATCGCCCGCCAA 60.819 57.895 0.00 0.00 0.00 4.52
5402 5878 2.203056 CATGAAGATCGCCCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
5403 5879 2.974698 CCATGAAGATCGCCCGCC 60.975 66.667 0.00 0.00 0.00 6.13
5404 5880 1.958205 CTCCATGAAGATCGCCCGC 60.958 63.158 0.00 0.00 0.00 6.13
5405 5881 1.301244 CCTCCATGAAGATCGCCCG 60.301 63.158 0.00 0.00 0.00 6.13
5406 5882 0.533755 CACCTCCATGAAGATCGCCC 60.534 60.000 0.00 0.00 0.00 6.13
5407 5883 0.533755 CCACCTCCATGAAGATCGCC 60.534 60.000 0.00 0.00 0.00 5.54
5408 5884 0.465705 TCCACCTCCATGAAGATCGC 59.534 55.000 0.00 0.00 0.00 4.58
5409 5885 2.103771 ACATCCACCTCCATGAAGATCG 59.896 50.000 0.00 0.00 0.00 3.69
5410 5886 3.853355 ACATCCACCTCCATGAAGATC 57.147 47.619 0.00 0.00 0.00 2.75
5411 5887 4.598036 AAACATCCACCTCCATGAAGAT 57.402 40.909 0.00 0.00 0.00 2.40
5412 5888 4.387026 AAAACATCCACCTCCATGAAGA 57.613 40.909 0.00 0.00 0.00 2.87
5413 5889 6.588719 TTTAAAACATCCACCTCCATGAAG 57.411 37.500 0.00 0.00 0.00 3.02
5414 5890 6.985653 TTTTAAAACATCCACCTCCATGAA 57.014 33.333 0.00 0.00 0.00 2.57
5415 5891 6.985653 TTTTTAAAACATCCACCTCCATGA 57.014 33.333 0.00 0.00 0.00 3.07
5477 5953 9.787532 CATCCATACGAATGTGTAGAAATTTTT 57.212 29.630 0.00 0.00 0.00 1.94
5478 5954 8.956426 ACATCCATACGAATGTGTAGAAATTTT 58.044 29.630 0.00 0.00 0.00 1.82
5479 5955 8.506168 ACATCCATACGAATGTGTAGAAATTT 57.494 30.769 0.00 0.00 0.00 1.82
5480 5956 9.778741 ATACATCCATACGAATGTGTAGAAATT 57.221 29.630 0.00 0.00 31.70 1.82
5481 5957 9.778741 AATACATCCATACGAATGTGTAGAAAT 57.221 29.630 0.00 0.00 31.70 2.17
5482 5958 9.256477 GAATACATCCATACGAATGTGTAGAAA 57.744 33.333 0.00 0.00 31.70 2.52
5483 5959 8.638873 AGAATACATCCATACGAATGTGTAGAA 58.361 33.333 0.00 0.00 31.70 2.10
5484 5960 8.178313 AGAATACATCCATACGAATGTGTAGA 57.822 34.615 0.00 0.00 31.70 2.59
5485 5961 9.343103 GTAGAATACATCCATACGAATGTGTAG 57.657 37.037 0.00 0.00 42.43 2.74
5525 6001 8.959548 TCTCAGCACAATGTATTTTGTTATGAT 58.040 29.630 0.00 0.00 37.73 2.45
5526 6002 8.334263 TCTCAGCACAATGTATTTTGTTATGA 57.666 30.769 0.00 0.00 37.73 2.15
5527 6003 7.219535 GCTCTCAGCACAATGTATTTTGTTATG 59.780 37.037 0.00 0.00 41.89 1.90
5528 6004 7.121759 AGCTCTCAGCACAATGTATTTTGTTAT 59.878 33.333 0.00 0.00 45.56 1.89
5529 6005 6.430925 AGCTCTCAGCACAATGTATTTTGTTA 59.569 34.615 0.00 0.00 45.56 2.41
5530 6006 5.242393 AGCTCTCAGCACAATGTATTTTGTT 59.758 36.000 0.00 0.00 45.56 2.83
5531 6007 4.763793 AGCTCTCAGCACAATGTATTTTGT 59.236 37.500 0.00 0.00 45.56 2.83
5532 6008 5.306532 AGCTCTCAGCACAATGTATTTTG 57.693 39.130 0.00 0.00 45.56 2.44
5533 6009 5.939883 TGTAGCTCTCAGCACAATGTATTTT 59.060 36.000 0.00 0.00 45.56 1.82
5534 6010 5.352569 GTGTAGCTCTCAGCACAATGTATTT 59.647 40.000 0.00 0.00 45.56 1.40
5535 6011 4.872691 GTGTAGCTCTCAGCACAATGTATT 59.127 41.667 0.00 0.00 45.56 1.89
5536 6012 4.081476 TGTGTAGCTCTCAGCACAATGTAT 60.081 41.667 0.00 0.00 45.56 2.29
5537 6013 3.258123 TGTGTAGCTCTCAGCACAATGTA 59.742 43.478 0.00 0.00 45.56 2.29
5538 6014 2.037641 TGTGTAGCTCTCAGCACAATGT 59.962 45.455 0.00 0.00 45.56 2.71
5539 6015 2.691927 TGTGTAGCTCTCAGCACAATG 58.308 47.619 0.00 0.00 45.56 2.82
5540 6016 3.407424 TTGTGTAGCTCTCAGCACAAT 57.593 42.857 13.10 0.00 45.56 2.71
5541 6017 2.908688 TTGTGTAGCTCTCAGCACAA 57.091 45.000 13.10 13.10 45.56 3.33
5542 6018 2.908688 TTTGTGTAGCTCTCAGCACA 57.091 45.000 0.00 0.00 45.56 4.57
5560 6036 9.696917 ATTAGAAATGCACGATTTTCTCTTTTT 57.303 25.926 14.63 0.00 40.42 1.94
5562 6038 9.994432 CTATTAGAAATGCACGATTTTCTCTTT 57.006 29.630 14.63 5.92 40.42 2.52
5563 6039 8.125448 GCTATTAGAAATGCACGATTTTCTCTT 58.875 33.333 14.63 7.86 40.42 2.85
5564 6040 7.517417 CGCTATTAGAAATGCACGATTTTCTCT 60.517 37.037 14.63 8.00 40.42 3.10
5565 6041 6.571520 CGCTATTAGAAATGCACGATTTTCTC 59.428 38.462 14.63 2.39 40.42 2.87
5566 6042 6.257849 TCGCTATTAGAAATGCACGATTTTCT 59.742 34.615 15.35 15.35 42.96 2.52
5567 6043 6.418956 TCGCTATTAGAAATGCACGATTTTC 58.581 36.000 2.86 2.86 34.18 2.29
5568 6044 6.358118 TCGCTATTAGAAATGCACGATTTT 57.642 33.333 0.00 0.00 34.18 1.82
5569 6045 5.984233 TCGCTATTAGAAATGCACGATTT 57.016 34.783 0.00 0.00 36.94 2.17
5570 6046 5.293324 TGTTCGCTATTAGAAATGCACGATT 59.707 36.000 0.00 0.00 0.00 3.34
5571 6047 4.808895 TGTTCGCTATTAGAAATGCACGAT 59.191 37.500 0.00 0.00 0.00 3.73
5572 6048 4.177783 TGTTCGCTATTAGAAATGCACGA 58.822 39.130 0.00 0.00 0.00 4.35
5573 6049 4.032900 ACTGTTCGCTATTAGAAATGCACG 59.967 41.667 0.00 0.00 0.00 5.34
5574 6050 5.163854 ACACTGTTCGCTATTAGAAATGCAC 60.164 40.000 0.00 0.00 0.00 4.57
5575 6051 4.935205 ACACTGTTCGCTATTAGAAATGCA 59.065 37.500 0.00 0.00 0.00 3.96
5576 6052 5.470845 ACACTGTTCGCTATTAGAAATGC 57.529 39.130 0.00 0.00 0.00 3.56
5577 6053 6.249260 GCAAACACTGTTCGCTATTAGAAATG 59.751 38.462 0.00 0.00 0.00 2.32
5578 6054 6.072728 TGCAAACACTGTTCGCTATTAGAAAT 60.073 34.615 6.41 0.00 0.00 2.17
5579 6055 5.237561 TGCAAACACTGTTCGCTATTAGAAA 59.762 36.000 6.41 0.00 0.00 2.52
5580 6056 4.752604 TGCAAACACTGTTCGCTATTAGAA 59.247 37.500 6.41 0.00 0.00 2.10
5581 6057 4.151689 GTGCAAACACTGTTCGCTATTAGA 59.848 41.667 6.41 0.00 43.85 2.10
5582 6058 4.394795 GTGCAAACACTGTTCGCTATTAG 58.605 43.478 6.41 0.00 43.85 1.73
5583 6059 4.398549 GTGCAAACACTGTTCGCTATTA 57.601 40.909 6.41 0.00 43.85 0.98
5584 6060 3.268013 GTGCAAACACTGTTCGCTATT 57.732 42.857 6.41 0.00 43.85 1.73
5585 6061 2.969443 GTGCAAACACTGTTCGCTAT 57.031 45.000 6.41 0.00 43.85 2.97
5605 6081 1.266718 GCGGTTTCAAACTGATGAGCA 59.733 47.619 13.65 0.00 40.26 4.26
5606 6082 1.725931 CGCGGTTTCAAACTGATGAGC 60.726 52.381 13.65 2.94 40.26 4.26
5607 6083 1.798223 TCGCGGTTTCAAACTGATGAG 59.202 47.619 13.65 1.18 40.26 2.90
5608 6084 1.872388 TCGCGGTTTCAAACTGATGA 58.128 45.000 13.65 6.81 40.26 2.92
5609 6085 2.900122 ATCGCGGTTTCAAACTGATG 57.100 45.000 13.65 4.48 40.26 3.07
5610 6086 3.004315 ACAAATCGCGGTTTCAAACTGAT 59.996 39.130 15.77 5.47 40.26 2.90
5611 6087 2.356382 ACAAATCGCGGTTTCAAACTGA 59.644 40.909 15.77 3.29 40.26 3.41
5612 6088 2.726633 ACAAATCGCGGTTTCAAACTG 58.273 42.857 15.77 5.98 40.80 3.16
5613 6089 3.608474 GCTACAAATCGCGGTTTCAAACT 60.608 43.478 15.77 0.00 0.00 2.66
5614 6090 2.655001 GCTACAAATCGCGGTTTCAAAC 59.345 45.455 15.77 1.41 0.00 2.93
5615 6091 2.550606 AGCTACAAATCGCGGTTTCAAA 59.449 40.909 15.77 2.21 0.00 2.69
5616 6092 2.147958 AGCTACAAATCGCGGTTTCAA 58.852 42.857 15.77 4.89 0.00 2.69
5617 6093 1.730064 GAGCTACAAATCGCGGTTTCA 59.270 47.619 15.77 4.90 0.00 2.69
5618 6094 2.000447 AGAGCTACAAATCGCGGTTTC 59.000 47.619 15.77 3.55 0.00 2.78
5619 6095 2.000447 GAGAGCTACAAATCGCGGTTT 59.000 47.619 12.49 12.49 0.00 3.27
5620 6096 1.067142 TGAGAGCTACAAATCGCGGTT 60.067 47.619 6.13 0.56 0.00 4.44
5621 6097 0.530744 TGAGAGCTACAAATCGCGGT 59.469 50.000 6.13 0.00 0.00 5.68
5622 6098 1.789464 GATGAGAGCTACAAATCGCGG 59.211 52.381 6.13 0.00 0.00 6.46
5623 6099 2.463876 TGATGAGAGCTACAAATCGCG 58.536 47.619 0.00 0.00 0.00 5.87
5624 6100 6.146837 ACATTATGATGAGAGCTACAAATCGC 59.853 38.462 4.20 0.00 36.73 4.58
5625 6101 7.649370 ACATTATGATGAGAGCTACAAATCG 57.351 36.000 4.20 0.00 36.73 3.34
5659 6135 8.287503 CATGTCAACATGGATGTATTCTACATG 58.712 37.037 14.08 7.04 46.11 3.21
5736 6212 6.327626 TCCATGAAGGTGGGTATTTTGAAAAA 59.672 34.615 0.00 0.00 39.80 1.94
5737 6213 5.841237 TCCATGAAGGTGGGTATTTTGAAAA 59.159 36.000 0.00 0.00 39.80 2.29
5738 6214 5.398236 TCCATGAAGGTGGGTATTTTGAAA 58.602 37.500 0.00 0.00 39.80 2.69
5739 6215 5.004361 TCCATGAAGGTGGGTATTTTGAA 57.996 39.130 0.00 0.00 39.80 2.69
5740 6216 4.569653 CCTCCATGAAGGTGGGTATTTTGA 60.570 45.833 0.00 0.00 45.51 2.69
5741 6217 3.701040 CCTCCATGAAGGTGGGTATTTTG 59.299 47.826 0.00 0.00 45.51 2.44
5742 6218 3.981212 CCTCCATGAAGGTGGGTATTTT 58.019 45.455 0.00 0.00 45.51 1.82
5743 6219 3.669939 CCTCCATGAAGGTGGGTATTT 57.330 47.619 0.00 0.00 45.51 1.40
5805 6281 6.642430 CCATGGAGATGGCTATTTTGAAAAA 58.358 36.000 5.56 0.00 43.00 1.94
5806 6282 6.224665 CCATGGAGATGGCTATTTTGAAAA 57.775 37.500 5.56 0.00 43.00 2.29
5807 6283 5.857471 CCATGGAGATGGCTATTTTGAAA 57.143 39.130 5.56 0.00 43.00 2.69
5819 6295 0.390860 GGTCGACCTCCATGGAGATG 59.609 60.000 38.37 26.00 44.53 2.90
5820 6296 1.109920 CGGTCGACCTCCATGGAGAT 61.110 60.000 38.37 26.96 44.53 2.75
5821 6297 1.753078 CGGTCGACCTCCATGGAGA 60.753 63.158 38.37 19.32 44.53 3.71
5822 6298 2.808315 CGGTCGACCTCCATGGAG 59.192 66.667 31.69 31.69 41.63 3.86
5823 6299 3.458163 GCGGTCGACCTCCATGGA 61.458 66.667 30.92 15.27 39.71 3.41
5824 6300 4.530857 GGCGGTCGACCTCCATGG 62.531 72.222 33.73 18.13 40.59 3.66
5825 6301 4.873129 CGGCGGTCGACCTCCATG 62.873 72.222 36.03 21.24 40.93 3.66
5840 6316 2.423185 TGAGATAGCAAAATGCCAACGG 59.577 45.455 0.00 0.00 46.52 4.44
5841 6317 3.763097 TGAGATAGCAAAATGCCAACG 57.237 42.857 0.00 0.00 46.52 4.10
5842 6318 5.517770 GTCAATGAGATAGCAAAATGCCAAC 59.482 40.000 0.00 0.00 46.52 3.77
5843 6319 5.419788 AGTCAATGAGATAGCAAAATGCCAA 59.580 36.000 0.00 0.00 46.52 4.52
5844 6320 4.951715 AGTCAATGAGATAGCAAAATGCCA 59.048 37.500 0.00 0.00 46.52 4.92
5845 6321 5.163581 ACAGTCAATGAGATAGCAAAATGCC 60.164 40.000 0.00 0.00 46.52 4.40
5846 6322 5.888105 ACAGTCAATGAGATAGCAAAATGC 58.112 37.500 0.00 0.00 45.46 3.56
5847 6323 7.532571 TGAACAGTCAATGAGATAGCAAAATG 58.467 34.615 0.00 0.00 0.00 2.32
5848 6324 7.692460 TGAACAGTCAATGAGATAGCAAAAT 57.308 32.000 0.00 0.00 0.00 1.82
5849 6325 7.692460 ATGAACAGTCAATGAGATAGCAAAA 57.308 32.000 0.00 0.00 37.30 2.44
5850 6326 8.791327 TTATGAACAGTCAATGAGATAGCAAA 57.209 30.769 0.00 0.00 37.30 3.68
5851 6327 8.969260 ATTATGAACAGTCAATGAGATAGCAA 57.031 30.769 0.00 0.00 37.30 3.91
5852 6328 9.702494 CTATTATGAACAGTCAATGAGATAGCA 57.298 33.333 0.00 0.00 37.30 3.49
5853 6329 9.703892 ACTATTATGAACAGTCAATGAGATAGC 57.296 33.333 0.00 0.00 37.30 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.