Multiple sequence alignment - TraesCS1A01G354700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G354700 chr1A 100.000 5612 0 0 1 5612 537547647 537542036 0.000000e+00 10364.0
1 TraesCS1A01G354700 chr1A 78.614 332 36 20 275 577 111124890 111124565 2.670000e-43 187.0
2 TraesCS1A01G354700 chr1A 100.000 28 0 0 155 182 469596500 469596473 1.000000e-02 52.8
3 TraesCS1A01G354700 chr1D 91.759 4878 259 69 1 4815 440397052 440401849 0.000000e+00 6649.0
4 TraesCS1A01G354700 chr1D 78.571 336 37 19 273 577 108102532 108102201 7.420000e-44 189.0
5 TraesCS1A01G354700 chr1D 87.640 89 11 0 273 361 62690442 62690530 2.770000e-18 104.0
6 TraesCS1A01G354700 chr1B 92.295 4231 196 64 648 4807 597800222 597804393 0.000000e+00 5888.0
7 TraesCS1A01G354700 chr1B 86.857 175 20 3 3 175 597796212 597796385 5.740000e-45 193.0
8 TraesCS1A01G354700 chr1B 95.652 69 2 1 5540 5608 597805731 597805798 5.940000e-20 110.0
9 TraesCS1A01G354700 chr1B 80.795 151 3 6 209 359 597800078 597800202 1.660000e-15 95.3
10 TraesCS1A01G354700 chr1B 82.292 96 8 8 488 577 443004738 443004646 2.170000e-09 75.0
11 TraesCS1A01G354700 chr2B 79.051 253 42 10 3777 4023 775129475 775129722 4.500000e-36 163.0
12 TraesCS1A01G354700 chr2B 78.862 246 37 14 3783 4019 161202383 161202144 9.740000e-33 152.0
13 TraesCS1A01G354700 chr2B 89.130 92 10 0 270 361 46114097 46114188 1.280000e-21 115.0
14 TraesCS1A01G354700 chr3B 77.860 271 35 18 365 620 90855470 90855730 1.630000e-30 145.0
15 TraesCS1A01G354700 chr3B 77.470 253 46 10 3777 4023 4540790 4541037 2.110000e-29 141.0
16 TraesCS1A01G354700 chr7A 91.011 89 6 2 273 361 257147216 257147130 9.880000e-23 119.0
17 TraesCS1A01G354700 chr7A 94.595 74 4 0 3953 4026 427556595 427556522 1.280000e-21 115.0
18 TraesCS1A01G354700 chr6B 94.366 71 4 0 3953 4023 424468187 424468257 5.940000e-20 110.0
19 TraesCS1A01G354700 chr6B 90.909 77 7 0 3953 4029 677088664 677088588 2.770000e-18 104.0
20 TraesCS1A01G354700 chr6B 83.696 92 15 0 270 361 579923774 579923865 2.790000e-13 87.9
21 TraesCS1A01G354700 chr6B 100.000 31 0 0 1028 1058 684410898 684410928 2.180000e-04 58.4
22 TraesCS1A01G354700 chr7D 92.105 76 6 0 273 348 118160181 118160106 2.140000e-19 108.0
23 TraesCS1A01G354700 chr7D 86.316 95 13 0 267 361 262364862 262364956 2.770000e-18 104.0
24 TraesCS1A01G354700 chr6A 93.151 73 5 0 3953 4025 79332217 79332145 2.140000e-19 108.0
25 TraesCS1A01G354700 chr3A 87.500 88 11 0 274 361 532848974 532849061 9.950000e-18 102.0
26 TraesCS1A01G354700 chr4D 80.420 143 15 11 468 609 503567822 503567692 4.630000e-16 97.1
27 TraesCS1A01G354700 chr4D 85.227 88 13 0 274 361 484685177 484685090 2.150000e-14 91.6
28 TraesCS1A01G354700 chrUn 72.564 390 71 25 273 641 290551947 290552321 1.660000e-15 95.3
29 TraesCS1A01G354700 chr7B 85.227 88 13 0 274 361 613257743 613257656 2.150000e-14 91.6
30 TraesCS1A01G354700 chr7B 94.286 35 1 1 1028 1062 54310987 54311020 1.000000e-02 52.8
31 TraesCS1A01G354700 chr4B 74.254 268 45 17 361 609 34909322 34909060 2.150000e-14 91.6
32 TraesCS1A01G354700 chr5B 83.516 91 10 5 488 574 674383598 674383509 4.660000e-11 80.5
33 TraesCS1A01G354700 chr5A 83.516 91 8 7 427 517 643454405 643454488 1.680000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G354700 chr1A 537542036 537547647 5611 True 10364.000 10364 100.00000 1 5612 1 chr1A.!!$R3 5611
1 TraesCS1A01G354700 chr1D 440397052 440401849 4797 False 6649.000 6649 91.75900 1 4815 1 chr1D.!!$F2 4814
2 TraesCS1A01G354700 chr1B 597796212 597805798 9586 False 1571.575 5888 88.89975 3 5608 4 chr1B.!!$F1 5605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 4339 0.106217 CCTGGTCACCAAAACCCTGT 60.106 55.000 0.00 0.0 35.84 4.00 F
1008 4702 0.391597 TCTTCGTCTTCCCACACACC 59.608 55.000 0.00 0.0 0.00 4.16 F
1523 5234 0.376152 GCCATCGATCAACTGCTGTG 59.624 55.000 0.00 0.0 0.00 3.66 F
1524 5235 0.376152 CCATCGATCAACTGCTGTGC 59.624 55.000 0.00 0.0 0.00 4.57 F
1693 5423 0.690192 TTTCAGGCAATGACTCCCGA 59.310 50.000 0.00 0.0 37.77 5.14 F
2243 5973 1.467734 CACAGGCAGATGAGAACAAGC 59.532 52.381 0.00 0.0 0.00 4.01 F
4019 7775 0.250510 TAGAACCATTGTGCACGCCA 60.251 50.000 13.13 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 5218 0.108662 TCGCACAGCAGTTGATCGAT 60.109 50.000 0.00 0.00 32.48 3.59 R
2873 6606 0.590195 AAGTGAGCAGAGCAAAAGCG 59.410 50.000 0.00 0.00 0.00 4.68 R
3554 7291 0.548510 GCCTCCTTATCAGCACCCTT 59.451 55.000 0.00 0.00 0.00 3.95 R
3664 7401 7.331934 TGTTAGTATTTAGCAGCTTGACAAGAG 59.668 37.037 19.51 11.03 0.00 2.85 R
3758 7500 7.553881 AGTGGTTATTGACAATATGTAGCAC 57.446 36.000 21.97 21.97 33.52 4.40 R
4268 8024 0.462047 CACGGCCACCATAGAACCTC 60.462 60.000 2.24 0.00 0.00 3.85 R
4876 8701 0.034380 ACTGATGCAAGGCAGCTGAT 60.034 50.000 20.43 1.05 45.80 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.573035 TCGTGCATACTATTACATGATTGAGTA 58.427 33.333 0.00 2.34 0.00 2.59
42 43 6.663093 TGATTGAGTAGGCACATAAATTTGGT 59.337 34.615 0.00 0.00 0.00 3.67
46 47 8.588290 TGAGTAGGCACATAAATTTGGTTATT 57.412 30.769 0.00 0.00 0.00 1.40
136 138 2.494918 GGGGACATGAGGACGTCG 59.505 66.667 9.92 0.00 32.74 5.12
182 185 7.358066 TGTTACGACTTAGGATAATAAGCTCG 58.642 38.462 0.00 12.53 39.47 5.03
256 3918 3.585289 TGTGGGATGTTTTAGTGGCTAGA 59.415 43.478 0.00 0.00 0.00 2.43
257 3919 4.192317 GTGGGATGTTTTAGTGGCTAGAG 58.808 47.826 0.00 0.00 0.00 2.43
258 3920 3.206964 GGGATGTTTTAGTGGCTAGAGC 58.793 50.000 0.00 0.00 41.14 4.09
292 3954 2.068519 CGAAAATTGCTTTTGGAGGCC 58.931 47.619 0.00 0.00 34.73 5.19
293 3955 2.068519 GAAAATTGCTTTTGGAGGCCG 58.931 47.619 0.00 0.00 34.73 6.13
294 3956 1.337118 AAATTGCTTTTGGAGGCCGA 58.663 45.000 0.00 0.00 0.00 5.54
295 3957 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.00 0.00 4.63
296 3958 1.598701 ATTGCTTTTGGAGGCCGAGC 61.599 55.000 0.00 2.19 0.00 5.03
297 3959 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
298 3960 2.402572 GCTTTTGGAGGCCGAGCTC 61.403 63.158 2.73 2.73 0.00 4.09
299 3961 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
300 3962 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
333 3995 9.396938 CCTCCATTTGCAAATTTTAAAATTCAC 57.603 29.630 21.95 18.21 37.62 3.18
394 4081 8.417106 ACAATGTACATGTGTGTAAATTTCCAA 58.583 29.630 9.63 0.00 43.19 3.53
401 4088 8.137437 ACATGTGTGTAAATTTCCAAGAAGAAG 58.863 33.333 0.00 0.00 36.63 2.85
416 4103 4.130118 AGAAGAAGCACGTTGAAATGAGT 58.870 39.130 0.00 0.00 0.00 3.41
424 4111 2.421775 ACGTTGAAATGAGTGTTGTGCA 59.578 40.909 0.00 0.00 0.00 4.57
481 4175 9.702494 ATTCATCCTCAAGAATTTGTTCTTTTC 57.298 29.630 0.92 0.00 39.10 2.29
483 4177 9.573166 TCATCCTCAAGAATTTGTTCTTTTCTA 57.427 29.630 0.92 0.00 39.10 2.10
516 4210 6.353323 TCGCATTTCAAGGTATTTCATCCTA 58.647 36.000 0.00 0.00 33.27 2.94
559 4253 5.375417 TTTCATCCTTGTACACTTGCATG 57.625 39.130 0.00 0.00 0.00 4.06
570 4264 8.534333 TTGTACACTTGCATGTTGTTTTTAAA 57.466 26.923 1.83 0.00 33.85 1.52
571 4265 8.534333 TGTACACTTGCATGTTGTTTTTAAAA 57.466 26.923 1.83 0.00 33.85 1.52
645 4339 0.106217 CCTGGTCACCAAAACCCTGT 60.106 55.000 0.00 0.00 35.84 4.00
652 4346 4.453751 GTCACCAAAACCCTGTAGTACAA 58.546 43.478 4.21 0.00 0.00 2.41
924 4618 3.508840 GGTCATTTCGGCCGGCAG 61.509 66.667 30.85 26.21 0.00 4.85
995 4689 1.079336 GCGGCTAGGGTTTCTTCGT 60.079 57.895 0.00 0.00 0.00 3.85
1008 4702 0.391597 TCTTCGTCTTCCCACACACC 59.608 55.000 0.00 0.00 0.00 4.16
1140 4847 0.913205 AGGAGAGACTGGTAGCGAGA 59.087 55.000 0.00 0.00 0.00 4.04
1236 4944 1.304134 GGCGACCATGAACCCCTTT 60.304 57.895 0.00 0.00 0.00 3.11
1480 5188 0.463833 GTTTAGGGTCTGCGGGGATG 60.464 60.000 0.00 0.00 0.00 3.51
1481 5189 2.265467 TTTAGGGTCTGCGGGGATGC 62.265 60.000 0.00 0.00 0.00 3.91
1507 5218 2.285889 TTTCGTGGAAAGGGTGGCCA 62.286 55.000 0.00 0.00 0.00 5.36
1511 5222 2.227757 TGGAAAGGGTGGCCATCGA 61.228 57.895 9.72 0.00 0.00 3.59
1523 5234 0.376152 GCCATCGATCAACTGCTGTG 59.624 55.000 0.00 0.00 0.00 3.66
1524 5235 0.376152 CCATCGATCAACTGCTGTGC 59.624 55.000 0.00 0.00 0.00 4.57
1529 5247 1.256376 CGATCAACTGCTGTGCGATAC 59.744 52.381 8.36 0.00 0.00 2.24
1627 5354 3.485394 TCAGTTTTAGACATTGCTGCCA 58.515 40.909 0.00 0.00 0.00 4.92
1662 5392 5.799827 TTTTTGGGGTTTAACTCCTGATG 57.200 39.130 15.69 0.00 40.26 3.07
1663 5393 3.449746 TTGGGGTTTAACTCCTGATGG 57.550 47.619 15.69 0.00 40.26 3.51
1673 5403 4.640771 AACTCCTGATGGTGTGTATGTT 57.359 40.909 0.00 0.00 39.69 2.71
1680 5410 5.335897 CCTGATGGTGTGTATGTTTTTCAGG 60.336 44.000 0.00 0.00 41.07 3.86
1687 5417 5.402270 GTGTGTATGTTTTTCAGGCAATGAC 59.598 40.000 0.00 0.00 37.77 3.06
1690 5420 4.525912 ATGTTTTTCAGGCAATGACTCC 57.474 40.909 0.00 0.00 37.77 3.85
1693 5423 0.690192 TTTCAGGCAATGACTCCCGA 59.310 50.000 0.00 0.00 37.77 5.14
1858 5588 4.475135 GAGGAAGGCGCCCAGGAC 62.475 72.222 26.15 9.62 0.00 3.85
1972 5702 1.539065 CGAAGGAACTATGAGCGCCAT 60.539 52.381 2.29 10.32 38.49 4.40
2048 5778 3.713764 CTGGGGAACTACCTCTGATGAAT 59.286 47.826 0.00 0.00 40.00 2.57
2053 5783 5.586643 GGGAACTACCTCTGATGAATTTGTC 59.413 44.000 0.00 0.00 38.98 3.18
2070 5800 4.585955 TTGTCGCCCAGTAAGATATCTC 57.414 45.455 5.51 0.00 0.00 2.75
2073 5803 3.574826 GTCGCCCAGTAAGATATCTCCTT 59.425 47.826 5.51 0.00 0.00 3.36
2075 5805 4.654262 TCGCCCAGTAAGATATCTCCTTTT 59.346 41.667 5.51 0.00 0.00 2.27
2243 5973 1.467734 CACAGGCAGATGAGAACAAGC 59.532 52.381 0.00 0.00 0.00 4.01
2539 6272 6.712241 TTTTTGTTTCGTTTTGCTTCATGA 57.288 29.167 0.00 0.00 0.00 3.07
2638 6371 9.643693 TTTGATAGCTTGGAATTTTCATTCTTC 57.356 29.630 0.00 0.00 39.17 2.87
2639 6372 8.585471 TGATAGCTTGGAATTTTCATTCTTCT 57.415 30.769 0.00 0.00 39.17 2.85
2640 6373 9.685276 TGATAGCTTGGAATTTTCATTCTTCTA 57.315 29.630 0.00 0.00 39.17 2.10
2718 6451 5.064441 AGCCAGTGAGATTTTTGCAATAC 57.936 39.130 0.00 0.00 0.00 1.89
2782 6515 7.044181 TGCTTGTGTAATTGATTTGTTTGGAA 58.956 30.769 0.00 0.00 0.00 3.53
3090 6827 4.441495 CGTGGTGGCTGAGTGATTATTAGA 60.441 45.833 0.00 0.00 0.00 2.10
3524 7261 3.445008 TGCCTCTTAACTCACTGGAGAT 58.555 45.455 0.00 0.00 44.26 2.75
3525 7262 3.840666 TGCCTCTTAACTCACTGGAGATT 59.159 43.478 0.00 0.00 44.26 2.40
3636 7373 7.044798 GCTAAGAAGGTCTGACATTACATCTT 58.955 38.462 7.77 9.54 31.97 2.40
3694 7432 7.759886 TGTCAAGCTGCTAAATACTAACAGTAG 59.240 37.037 0.90 0.00 33.66 2.57
3696 7434 8.311836 TCAAGCTGCTAAATACTAACAGTAGTT 58.688 33.333 0.90 4.66 41.25 2.24
3744 7484 8.078596 GCAATAACTTTCTGATTCTCAGTTTGT 58.921 33.333 4.21 0.14 44.58 2.83
3746 7486 8.908786 ATAACTTTCTGATTCTCAGTTTGTGA 57.091 30.769 4.21 0.00 44.58 3.58
3747 7487 7.814264 AACTTTCTGATTCTCAGTTTGTGAT 57.186 32.000 4.21 0.00 44.58 3.06
3748 7488 8.908786 AACTTTCTGATTCTCAGTTTGTGATA 57.091 30.769 4.21 0.00 44.58 2.15
3754 7496 9.194972 TCTGATTCTCAGTTTGTGATACTAGAT 57.805 33.333 0.00 0.00 44.58 1.98
3792 7534 3.066760 GTCAATAACCACTTAGGGCATGC 59.933 47.826 9.90 9.90 43.89 4.06
3880 7622 8.511604 AATGATGTACAAAGGGTTATCTCTTG 57.488 34.615 0.00 0.00 0.00 3.02
3920 7664 9.807649 AACCAGATTTCTTAAATATGTGATTGC 57.192 29.630 6.33 0.00 38.17 3.56
3994 7745 8.727100 TCATCATTTATCCTATGTGGTACTCT 57.273 34.615 0.00 0.00 37.07 3.24
4012 7768 8.258007 TGGTACTCTTAAGATAGAACCATTGTG 58.742 37.037 17.65 2.48 32.64 3.33
4019 7775 0.250510 TAGAACCATTGTGCACGCCA 60.251 50.000 13.13 0.00 0.00 5.69
4021 7777 0.808125 GAACCATTGTGCACGCCATA 59.192 50.000 13.13 0.00 0.00 2.74
4023 7779 1.473258 ACCATTGTGCACGCCATAAT 58.527 45.000 13.13 2.77 35.89 1.28
4024 7780 1.405105 ACCATTGTGCACGCCATAATC 59.595 47.619 13.13 0.00 33.58 1.75
4026 7782 2.099592 CCATTGTGCACGCCATAATCTT 59.900 45.455 13.13 0.00 33.58 2.40
4027 7783 2.917701 TTGTGCACGCCATAATCTTG 57.082 45.000 13.13 0.00 0.00 3.02
4029 7785 2.158559 TGTGCACGCCATAATCTTGTT 58.841 42.857 13.13 0.00 0.00 2.83
4030 7786 2.556189 TGTGCACGCCATAATCTTGTTT 59.444 40.909 13.13 0.00 0.00 2.83
4031 7787 3.171277 GTGCACGCCATAATCTTGTTTC 58.829 45.455 0.00 0.00 0.00 2.78
4032 7788 3.081061 TGCACGCCATAATCTTGTTTCT 58.919 40.909 0.00 0.00 0.00 2.52
4033 7789 3.126858 TGCACGCCATAATCTTGTTTCTC 59.873 43.478 0.00 0.00 0.00 2.87
4034 7790 3.375299 GCACGCCATAATCTTGTTTCTCT 59.625 43.478 0.00 0.00 0.00 3.10
4035 7791 4.494855 GCACGCCATAATCTTGTTTCTCTC 60.495 45.833 0.00 0.00 0.00 3.20
4036 7792 4.872691 CACGCCATAATCTTGTTTCTCTCT 59.127 41.667 0.00 0.00 0.00 3.10
4037 7793 5.006165 CACGCCATAATCTTGTTTCTCTCTC 59.994 44.000 0.00 0.00 0.00 3.20
4038 7794 4.509600 CGCCATAATCTTGTTTCTCTCTCC 59.490 45.833 0.00 0.00 0.00 3.71
4039 7795 5.431765 GCCATAATCTTGTTTCTCTCTCCA 58.568 41.667 0.00 0.00 0.00 3.86
4040 7796 5.526846 GCCATAATCTTGTTTCTCTCTCCAG 59.473 44.000 0.00 0.00 0.00 3.86
4041 7797 6.631314 GCCATAATCTTGTTTCTCTCTCCAGA 60.631 42.308 0.00 0.00 0.00 3.86
4042 7798 7.334090 CCATAATCTTGTTTCTCTCTCCAGAA 58.666 38.462 0.00 0.00 0.00 3.02
4043 7799 7.826252 CCATAATCTTGTTTCTCTCTCCAGAAA 59.174 37.037 0.00 0.00 39.59 2.52
4044 7800 8.881743 CATAATCTTGTTTCTCTCTCCAGAAAG 58.118 37.037 0.00 0.00 41.94 2.62
4049 7805 4.780021 TGTTTCTCTCTCCAGAAAGGCTAT 59.220 41.667 0.00 0.00 41.94 2.97
4161 7917 0.730265 TTAGCGCGCCCAGTTTTATG 59.270 50.000 30.33 0.00 0.00 1.90
4218 7974 5.552178 ACTAACTTGGGATTGTTCTCTGAC 58.448 41.667 0.00 0.00 0.00 3.51
4280 8036 4.285863 CTGAAGGAGAGAGGTTCTATGGT 58.714 47.826 0.00 0.00 35.87 3.55
4349 8105 2.683572 GGATTTGGTGGTGGGGGC 60.684 66.667 0.00 0.00 0.00 5.80
4364 8120 4.564110 GGCTATCACGGCCCACCC 62.564 72.222 0.00 0.00 43.49 4.61
4453 8209 2.632996 TCTCAAGTACCACCTTCACCAG 59.367 50.000 0.00 0.00 0.00 4.00
4475 8231 0.587768 TCGTCGACGCTGTCAAGTTA 59.412 50.000 32.19 8.87 39.60 2.24
4486 8242 6.569780 ACGCTGTCAAGTTAAAATTTTCCTT 58.430 32.000 6.72 8.15 0.00 3.36
4634 8393 3.476552 TGAATTGCTCGTTCCTTTGTCT 58.523 40.909 0.00 0.00 0.00 3.41
4637 8396 1.581934 TGCTCGTTCCTTTGTCTGTG 58.418 50.000 0.00 0.00 0.00 3.66
4685 8444 4.184079 TGCGAGTGATCCATCAGATATG 57.816 45.455 0.00 0.00 37.51 1.78
4687 8446 3.519579 CGAGTGATCCATCAGATATGGC 58.480 50.000 0.00 0.00 39.01 4.40
4700 8459 1.929836 GATATGGCTAGCGCTGCATAC 59.070 52.381 22.90 9.53 36.09 2.39
4701 8460 0.678950 TATGGCTAGCGCTGCATACA 59.321 50.000 22.90 14.60 36.09 2.29
4737 8496 1.341156 GGGGACAGCTAGGCATCAGT 61.341 60.000 0.00 0.00 0.00 3.41
4751 8510 0.035317 ATCAGTTGGCTTGCGAGTCA 59.965 50.000 3.46 3.46 35.23 3.41
4752 8511 0.035317 TCAGTTGGCTTGCGAGTCAT 59.965 50.000 9.58 0.00 37.35 3.06
4753 8512 0.445436 CAGTTGGCTTGCGAGTCATC 59.555 55.000 9.58 8.89 37.35 2.92
4754 8513 0.035317 AGTTGGCTTGCGAGTCATCA 59.965 50.000 17.01 0.00 37.35 3.07
4822 8602 4.079850 CAGCGCTGCTCCCACTCT 62.080 66.667 26.68 0.00 36.40 3.24
4823 8603 2.363018 AGCGCTGCTCCCACTCTA 60.363 61.111 10.39 0.00 30.62 2.43
4825 8605 0.468214 AGCGCTGCTCCCACTCTATA 60.468 55.000 10.39 0.00 30.62 1.31
4828 8608 0.682292 GCTGCTCCCACTCTATACCC 59.318 60.000 0.00 0.00 0.00 3.69
4829 8609 0.962489 CTGCTCCCACTCTATACCCG 59.038 60.000 0.00 0.00 0.00 5.28
4831 8611 0.674534 GCTCCCACTCTATACCCGTG 59.325 60.000 0.00 0.00 0.00 4.94
4846 8634 2.964978 GTGTCCCCATTGCAGCAC 59.035 61.111 0.00 0.00 0.00 4.40
4848 8636 3.070576 GTCCCCATTGCAGCACCC 61.071 66.667 0.00 0.00 0.00 4.61
4876 8701 1.827344 TGGTCATGCAACCAAACAACA 59.173 42.857 7.83 0.00 46.26 3.33
4877 8702 2.433604 TGGTCATGCAACCAAACAACAT 59.566 40.909 7.83 0.00 46.26 2.71
4882 8707 1.755959 TGCAACCAAACAACATCAGCT 59.244 42.857 0.00 0.00 0.00 4.24
4887 8712 1.342174 CCAAACAACATCAGCTGCCTT 59.658 47.619 9.47 0.00 0.00 4.35
4892 8717 0.815734 AACATCAGCTGCCTTGCATC 59.184 50.000 9.47 0.00 38.13 3.91
4898 8723 2.707849 GCTGCCTTGCATCAGTGGG 61.708 63.158 11.23 0.00 38.13 4.61
4899 8724 2.677524 TGCCTTGCATCAGTGGGC 60.678 61.111 0.00 0.00 42.73 5.36
4900 8725 2.677524 GCCTTGCATCAGTGGGCA 60.678 61.111 6.33 6.33 42.08 5.36
4902 8727 1.303888 CCTTGCATCAGTGGGCAGT 60.304 57.895 9.73 0.00 41.68 4.40
4907 8732 1.748122 CATCAGTGGGCAGTGGCTC 60.748 63.158 17.16 10.12 42.48 4.70
4935 8760 2.699496 CCCCTCCCCTAGTCTGCT 59.301 66.667 0.00 0.00 0.00 4.24
4937 8762 1.341156 CCCCTCCCCTAGTCTGCTTG 61.341 65.000 0.00 0.00 0.00 4.01
4938 8763 0.618968 CCCTCCCCTAGTCTGCTTGT 60.619 60.000 0.00 0.00 0.00 3.16
4940 8765 0.827368 CTCCCCTAGTCTGCTTGTCC 59.173 60.000 0.00 0.00 0.00 4.02
4941 8766 0.413832 TCCCCTAGTCTGCTTGTCCT 59.586 55.000 0.00 0.00 0.00 3.85
4951 8799 0.250252 TGCTTGTCCTCGCAATGTCA 60.250 50.000 0.00 0.00 32.40 3.58
4957 8805 2.028203 TGTCCTCGCAATGTCAATGAGA 60.028 45.455 0.00 0.00 0.00 3.27
4958 8806 3.201290 GTCCTCGCAATGTCAATGAGAT 58.799 45.455 0.00 0.00 0.00 2.75
4959 8807 3.002042 GTCCTCGCAATGTCAATGAGATG 59.998 47.826 0.00 0.00 0.00 2.90
4960 8808 2.941064 CCTCGCAATGTCAATGAGATGT 59.059 45.455 0.00 0.00 0.00 3.06
4961 8809 4.122046 CCTCGCAATGTCAATGAGATGTA 58.878 43.478 0.00 0.00 0.00 2.29
4962 8810 4.025396 CCTCGCAATGTCAATGAGATGTAC 60.025 45.833 0.00 0.00 0.00 2.90
4964 8812 4.567959 TCGCAATGTCAATGAGATGTACAG 59.432 41.667 0.33 0.00 0.00 2.74
4966 8814 5.163824 CGCAATGTCAATGAGATGTACAGTT 60.164 40.000 0.33 0.00 0.00 3.16
4967 8815 6.025896 GCAATGTCAATGAGATGTACAGTTG 58.974 40.000 0.33 2.04 0.00 3.16
4968 8816 5.808042 ATGTCAATGAGATGTACAGTTGC 57.192 39.130 0.33 0.00 0.00 4.17
4969 8817 4.640364 TGTCAATGAGATGTACAGTTGCA 58.360 39.130 0.33 0.00 0.00 4.08
4970 8818 5.062528 TGTCAATGAGATGTACAGTTGCAA 58.937 37.500 0.33 0.00 0.00 4.08
4971 8819 5.049474 TGTCAATGAGATGTACAGTTGCAAC 60.049 40.000 22.17 22.17 0.00 4.17
4972 8820 5.049474 GTCAATGAGATGTACAGTTGCAACA 60.049 40.000 30.11 11.60 0.00 3.33
4973 8821 5.049474 TCAATGAGATGTACAGTTGCAACAC 60.049 40.000 30.11 19.91 0.00 3.32
4974 8822 3.138304 TGAGATGTACAGTTGCAACACC 58.862 45.455 30.11 15.00 0.00 4.16
4975 8823 2.143122 AGATGTACAGTTGCAACACCG 58.857 47.619 30.11 19.79 0.00 4.94
4976 8824 1.196808 GATGTACAGTTGCAACACCGG 59.803 52.381 30.11 18.23 0.00 5.28
4977 8825 1.281656 GTACAGTTGCAACACCGGC 59.718 57.895 30.11 12.83 0.00 6.13
4978 8826 2.248135 TACAGTTGCAACACCGGCG 61.248 57.895 30.11 13.51 0.00 6.46
4979 8827 2.646117 TACAGTTGCAACACCGGCGA 62.646 55.000 30.11 6.32 0.00 5.54
4985 8833 2.029073 CAACACCGGCGACACTCT 59.971 61.111 9.30 0.00 0.00 3.24
4987 8835 3.553437 AACACCGGCGACACTCTCG 62.553 63.158 9.30 0.00 45.97 4.04
4990 8838 2.396955 ACCGGCGACACTCTCGTAG 61.397 63.158 9.30 0.00 44.92 3.51
4991 8839 2.277373 CGGCGACACTCTCGTAGC 60.277 66.667 0.00 0.00 44.92 3.58
4992 8840 2.875485 GGCGACACTCTCGTAGCA 59.125 61.111 0.00 0.00 44.92 3.49
4993 8841 1.226435 GGCGACACTCTCGTAGCAG 60.226 63.158 0.00 0.00 44.92 4.24
4995 8843 1.581402 CGACACTCTCGTAGCAGCG 60.581 63.158 0.00 0.00 37.64 5.18
4996 8844 1.870016 GACACTCTCGTAGCAGCGC 60.870 63.158 0.00 0.00 0.00 5.92
4997 8845 2.259875 GACACTCTCGTAGCAGCGCT 62.260 60.000 2.64 2.64 43.41 5.92
4998 8846 1.585002 CACTCTCGTAGCAGCGCTC 60.585 63.158 7.13 2.24 40.44 5.03
4999 8847 1.747367 ACTCTCGTAGCAGCGCTCT 60.747 57.895 7.13 10.92 40.44 4.09
5000 8848 1.309499 ACTCTCGTAGCAGCGCTCTT 61.309 55.000 7.13 0.00 40.44 2.85
5004 8852 2.781300 GTAGCAGCGCTCTTGCAC 59.219 61.111 20.47 12.93 40.44 4.57
5005 8853 2.810887 TAGCAGCGCTCTTGCACG 60.811 61.111 20.47 3.63 40.44 5.34
5008 8856 3.782244 CAGCGCTCTTGCACGGTC 61.782 66.667 7.13 0.00 38.04 4.79
5028 8876 0.846693 AGGTGCCCTGACTTTTGAGT 59.153 50.000 0.00 0.00 29.57 3.41
5032 8880 5.794893 AGGTGCCCTGACTTTTGAGTATCA 61.795 45.833 0.00 0.00 36.10 2.15
5033 8881 7.049902 AGGTGCCCTGACTTTTGAGTATCAT 62.050 44.000 0.00 0.00 37.47 2.45
5034 8882 8.759958 AGGTGCCCTGACTTTTGAGTATCATC 62.760 46.154 0.00 0.00 37.47 2.92
5045 8893 4.776435 TGAGTATCATCCCTCATTTGCA 57.224 40.909 0.00 0.00 42.56 4.08
5046 8894 5.114764 TGAGTATCATCCCTCATTTGCAA 57.885 39.130 0.00 0.00 42.56 4.08
5047 8895 4.883585 TGAGTATCATCCCTCATTTGCAAC 59.116 41.667 0.00 0.00 42.56 4.17
5048 8896 4.858850 AGTATCATCCCTCATTTGCAACA 58.141 39.130 0.00 0.00 0.00 3.33
5049 8897 5.452255 AGTATCATCCCTCATTTGCAACAT 58.548 37.500 0.00 0.00 0.00 2.71
5050 8898 5.895534 AGTATCATCCCTCATTTGCAACATT 59.104 36.000 0.00 0.00 0.00 2.71
5051 8899 5.687166 ATCATCCCTCATTTGCAACATTT 57.313 34.783 0.00 0.00 0.00 2.32
5053 8901 4.283978 TCATCCCTCATTTGCAACATTTGT 59.716 37.500 0.00 0.00 0.00 2.83
5054 8902 4.686191 TCCCTCATTTGCAACATTTGTT 57.314 36.364 0.00 0.00 39.12 2.83
5055 8903 4.630111 TCCCTCATTTGCAACATTTGTTC 58.370 39.130 0.00 0.00 35.83 3.18
5056 8904 4.100653 TCCCTCATTTGCAACATTTGTTCA 59.899 37.500 0.00 0.00 35.83 3.18
5057 8905 4.815308 CCCTCATTTGCAACATTTGTTCAA 59.185 37.500 0.00 0.00 35.83 2.69
5066 8974 5.754406 TGCAACATTTGTTCAATTCTTCTGG 59.246 36.000 0.00 0.00 35.83 3.86
5070 8978 6.507023 ACATTTGTTCAATTCTTCTGGTGAC 58.493 36.000 0.00 0.00 0.00 3.67
5088 8996 2.205911 GACTTCTTCCATAAGCCGCTC 58.794 52.381 0.00 0.00 32.36 5.03
5102 9010 3.093172 GCTCCCCTCCCCTTCCAG 61.093 72.222 0.00 0.00 0.00 3.86
5103 9011 2.787866 CTCCCCTCCCCTTCCAGA 59.212 66.667 0.00 0.00 0.00 3.86
5106 9014 2.684499 CCCCTCCCCTTCCAGAAGC 61.684 68.421 1.68 0.00 37.11 3.86
5108 9016 1.301293 CCTCCCCTTCCAGAAGCAC 59.699 63.158 1.68 0.00 37.11 4.40
5109 9017 1.492133 CCTCCCCTTCCAGAAGCACA 61.492 60.000 1.68 0.00 37.11 4.57
5110 9018 0.622665 CTCCCCTTCCAGAAGCACAT 59.377 55.000 1.68 0.00 37.11 3.21
5111 9019 0.329261 TCCCCTTCCAGAAGCACATG 59.671 55.000 1.68 0.00 37.11 3.21
5123 9033 1.656587 AGCACATGGTTCCCTACTCA 58.343 50.000 0.00 0.00 0.00 3.41
5124 9034 1.556911 AGCACATGGTTCCCTACTCAG 59.443 52.381 0.00 0.00 0.00 3.35
5149 9067 5.317733 AGGATGTGACTTACGAGAAGAAG 57.682 43.478 8.49 0.00 0.00 2.85
5150 9068 4.158764 AGGATGTGACTTACGAGAAGAAGG 59.841 45.833 8.49 0.00 0.00 3.46
5151 9069 3.299340 TGTGACTTACGAGAAGAAGGC 57.701 47.619 8.49 0.00 0.00 4.35
5155 9073 4.150804 GTGACTTACGAGAAGAAGGCAAAG 59.849 45.833 8.49 0.00 42.30 2.77
5156 9074 3.067833 ACTTACGAGAAGAAGGCAAAGC 58.932 45.455 8.49 0.00 0.00 3.51
5158 9076 1.967319 ACGAGAAGAAGGCAAAGCAA 58.033 45.000 0.00 0.00 0.00 3.91
5167 9085 5.343307 AGAAGGCAAAGCAAAAGAAGAAA 57.657 34.783 0.00 0.00 0.00 2.52
5169 9087 6.172630 AGAAGGCAAAGCAAAAGAAGAAAAA 58.827 32.000 0.00 0.00 0.00 1.94
5186 9104 1.720781 AAAAAGGTCCTGGCTGCATT 58.279 45.000 0.50 0.00 0.00 3.56
5189 9107 1.841302 AAGGTCCTGGCTGCATTCGA 61.841 55.000 0.50 0.00 0.00 3.71
5190 9108 2.109126 GGTCCTGGCTGCATTCGAC 61.109 63.158 0.50 1.00 0.00 4.20
5192 9110 1.086634 GTCCTGGCTGCATTCGACTC 61.087 60.000 0.50 0.00 0.00 3.36
5193 9111 2.169789 CCTGGCTGCATTCGACTCG 61.170 63.158 0.50 0.00 0.00 4.18
5194 9112 2.806856 CTGGCTGCATTCGACTCGC 61.807 63.158 0.50 0.00 0.00 5.03
5195 9113 2.815211 GGCTGCATTCGACTCGCA 60.815 61.111 0.50 2.92 0.00 5.10
5196 9114 2.397252 GCTGCATTCGACTCGCAC 59.603 61.111 0.00 0.00 0.00 5.34
5204 9143 1.533988 TTCGACTCGCACGAACAACG 61.534 55.000 0.00 0.00 43.19 4.10
5227 9166 4.057406 TGTTTCAAAGCCAAATGGTCAG 57.943 40.909 0.71 0.00 37.57 3.51
5233 9172 2.993471 GCCAAATGGTCAGCCGTGG 61.993 63.158 0.71 0.00 37.06 4.94
5244 9183 3.443045 GCCGTGGCCTGGACATTG 61.443 66.667 17.63 0.87 34.56 2.82
5246 9185 1.303236 CCGTGGCCTGGACATTGAA 60.303 57.895 5.03 0.00 0.00 2.69
5247 9186 0.680921 CCGTGGCCTGGACATTGAAT 60.681 55.000 5.03 0.00 0.00 2.57
5248 9187 1.176527 CGTGGCCTGGACATTGAATT 58.823 50.000 5.03 0.00 0.00 2.17
5250 9189 2.415893 CGTGGCCTGGACATTGAATTTC 60.416 50.000 5.03 0.00 0.00 2.17
5251 9190 2.562298 GTGGCCTGGACATTGAATTTCA 59.438 45.455 5.03 0.00 0.00 2.69
5252 9191 3.196254 GTGGCCTGGACATTGAATTTCAT 59.804 43.478 5.03 0.00 0.00 2.57
5253 9192 3.839490 TGGCCTGGACATTGAATTTCATT 59.161 39.130 3.32 0.00 0.00 2.57
5254 9193 4.286549 TGGCCTGGACATTGAATTTCATTT 59.713 37.500 3.32 0.00 0.00 2.32
5255 9194 5.221884 TGGCCTGGACATTGAATTTCATTTT 60.222 36.000 3.32 0.00 0.00 1.82
5256 9195 5.122711 GGCCTGGACATTGAATTTCATTTTG 59.877 40.000 0.00 2.09 0.00 2.44
5257 9196 5.933463 GCCTGGACATTGAATTTCATTTTGA 59.067 36.000 0.00 0.00 0.00 2.69
5258 9197 6.128472 GCCTGGACATTGAATTTCATTTTGAC 60.128 38.462 0.00 0.42 0.00 3.18
5259 9198 6.930164 CCTGGACATTGAATTTCATTTTGACA 59.070 34.615 0.00 4.16 0.00 3.58
5260 9199 7.604927 CCTGGACATTGAATTTCATTTTGACAT 59.395 33.333 0.00 0.00 0.00 3.06
5261 9200 8.312896 TGGACATTGAATTTCATTTTGACATG 57.687 30.769 0.00 2.17 0.00 3.21
5275 9214 2.710377 TGACATGGTCCGAATTCTTGG 58.290 47.619 3.52 0.00 0.00 3.61
5278 9217 3.282021 ACATGGTCCGAATTCTTGGATG 58.718 45.455 3.52 2.53 36.48 3.51
5279 9218 3.054434 ACATGGTCCGAATTCTTGGATGA 60.054 43.478 3.52 0.00 36.48 2.92
5280 9219 3.931907 TGGTCCGAATTCTTGGATGAT 57.068 42.857 3.52 0.00 36.48 2.45
5281 9220 4.235079 TGGTCCGAATTCTTGGATGATT 57.765 40.909 3.52 0.00 36.48 2.57
5282 9221 4.599041 TGGTCCGAATTCTTGGATGATTT 58.401 39.130 3.52 0.00 36.48 2.17
5283 9222 5.750524 TGGTCCGAATTCTTGGATGATTTA 58.249 37.500 3.52 0.00 36.48 1.40
5314 9257 5.388408 TGTTGCATTGCTGAATTGTGATA 57.612 34.783 10.49 0.00 0.00 2.15
5317 9260 6.145858 TGTTGCATTGCTGAATTGTGATAAAC 59.854 34.615 10.49 1.88 0.00 2.01
5320 9263 6.587226 TGCATTGCTGAATTGTGATAAACTTC 59.413 34.615 10.49 0.00 0.00 3.01
5324 9267 5.474532 TGCTGAATTGTGATAAACTTCTGCT 59.525 36.000 11.78 0.00 39.81 4.24
5325 9268 6.654582 TGCTGAATTGTGATAAACTTCTGCTA 59.345 34.615 11.78 0.10 39.81 3.49
5349 9292 0.739462 TGGTCGACGTGCATGGATTC 60.739 55.000 11.36 0.00 0.00 2.52
5350 9293 1.631072 GTCGACGTGCATGGATTCG 59.369 57.895 11.36 10.75 0.00 3.34
5354 9297 1.153369 ACGTGCATGGATTCGAGGG 60.153 57.895 11.36 0.00 0.00 4.30
5360 9303 1.401905 GCATGGATTCGAGGGTTTGAC 59.598 52.381 0.00 0.00 0.00 3.18
5363 9306 4.450976 CATGGATTCGAGGGTTTGACATA 58.549 43.478 0.00 0.00 0.00 2.29
5372 9315 5.008217 TCGAGGGTTTGACATAAAAAGTGTG 59.992 40.000 0.00 0.00 0.00 3.82
5373 9316 5.220970 CGAGGGTTTGACATAAAAAGTGTGT 60.221 40.000 0.00 0.00 0.00 3.72
5379 9322 6.371809 TTGACATAAAAAGTGTGTCTGTCC 57.628 37.500 6.34 0.00 42.03 4.02
5380 9323 4.509970 TGACATAAAAAGTGTGTCTGTCCG 59.490 41.667 6.34 0.00 42.03 4.79
5383 9326 0.180406 AAAAGTGTGTCTGTCCGGCT 59.820 50.000 0.00 0.00 0.00 5.52
5399 9342 1.886655 CGGCTAAACTTTTGAGGGGCT 60.887 52.381 0.00 0.00 0.00 5.19
5401 9344 1.067565 GCTAAACTTTTGAGGGGCTGC 60.068 52.381 0.00 0.00 0.00 5.25
5403 9346 1.463553 AAACTTTTGAGGGGCTGCCG 61.464 55.000 13.40 0.00 0.00 5.69
5404 9347 2.282462 CTTTTGAGGGGCTGCCGT 60.282 61.111 13.40 1.57 0.00 5.68
5414 9357 4.120331 GCTGCCGTGCCAATGGTC 62.120 66.667 0.00 0.00 34.60 4.02
5415 9358 2.360350 CTGCCGTGCCAATGGTCT 60.360 61.111 0.00 0.00 34.60 3.85
5416 9359 1.973281 CTGCCGTGCCAATGGTCTT 60.973 57.895 0.00 0.00 34.60 3.01
5417 9360 2.203972 CTGCCGTGCCAATGGTCTTG 62.204 60.000 0.00 0.00 34.60 3.02
5418 9361 2.568090 CCGTGCCAATGGTCTTGC 59.432 61.111 0.00 0.00 0.00 4.01
5419 9362 2.267351 CCGTGCCAATGGTCTTGCA 61.267 57.895 0.00 0.00 0.00 4.08
5420 9363 1.659233 CGTGCCAATGGTCTTGCAA 59.341 52.632 0.00 0.00 35.16 4.08
5421 9364 0.031857 CGTGCCAATGGTCTTGCAAA 59.968 50.000 0.00 0.00 35.16 3.68
5423 9366 0.680618 TGCCAATGGTCTTGCAAAGG 59.319 50.000 0.00 0.00 46.24 3.11
5431 9379 3.511362 TCTTGCAAAGGCTTGTCCA 57.489 47.368 0.00 0.00 46.24 4.02
5435 9383 0.680618 TGCAAAGGCTTGTCCATTGG 59.319 50.000 0.00 0.00 42.29 3.16
5436 9384 0.681175 GCAAAGGCTTGTCCATTGGT 59.319 50.000 0.00 0.00 42.29 3.67
5437 9385 1.892474 GCAAAGGCTTGTCCATTGGTA 59.108 47.619 0.00 0.00 42.29 3.25
5441 9389 5.337169 GCAAAGGCTTGTCCATTGGTATTTA 60.337 40.000 0.00 0.00 42.29 1.40
5449 9397 4.785914 TGTCCATTGGTATTTAGAGGACCA 59.214 41.667 1.86 0.00 42.49 4.02
5460 9408 5.878406 TTTAGAGGACCAAATTTGCCAAA 57.122 34.783 12.92 0.00 0.00 3.28
5461 9409 6.432403 TTTAGAGGACCAAATTTGCCAAAT 57.568 33.333 12.92 0.00 0.00 2.32
5463 9411 3.056607 AGAGGACCAAATTTGCCAAATCG 60.057 43.478 12.92 0.00 0.00 3.34
5464 9412 2.028203 AGGACCAAATTTGCCAAATCGG 60.028 45.455 12.92 14.06 38.11 4.18
5466 9414 2.993220 GACCAAATTTGCCAAATCGGAC 59.007 45.455 19.86 12.79 36.56 4.79
5472 9856 6.039270 CCAAATTTGCCAAATCGGACTATAGA 59.961 38.462 12.92 0.00 36.56 1.98
5476 9860 3.070878 TGCCAAATCGGACTATAGATGCA 59.929 43.478 6.78 0.00 36.56 3.96
5482 9866 3.491342 TCGGACTATAGATGCAGCTCTT 58.509 45.455 8.28 0.00 0.00 2.85
5486 9870 4.082245 GGACTATAGATGCAGCTCTTCTCC 60.082 50.000 8.28 5.30 32.25 3.71
5493 9877 0.107752 GCAGCTCTTCTCCCTCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
5494 9878 0.540923 CAGCTCTTCTCCCTCCTTGG 59.459 60.000 0.00 0.00 0.00 3.61
5504 9888 1.077858 CCTCCTTGGAGAAGCAGCC 60.078 63.158 17.55 0.00 38.35 4.85
5516 9900 3.051081 GAAGCAGCCTTCAGAAGAGAA 57.949 47.619 12.14 0.00 45.44 2.87
5528 9912 6.350110 CCTTCAGAAGAGAAGAGGTGACTTAG 60.350 46.154 12.14 0.00 46.18 2.18
5543 9927 5.249420 GTGACTTAGGAGAGAAGGCAAAAT 58.751 41.667 0.00 0.00 43.53 1.82
5591 9995 1.433053 CCACGGACAGCGTTGTTTCA 61.433 55.000 6.30 0.00 37.76 2.69
5608 10012 1.029408 TCAAAGCCAACACACACGCT 61.029 50.000 0.00 0.00 0.00 5.07
5609 10013 0.592247 CAAAGCCAACACACACGCTC 60.592 55.000 0.00 0.00 0.00 5.03
5610 10014 1.724582 AAAGCCAACACACACGCTCC 61.725 55.000 0.00 0.00 0.00 4.70
5611 10015 2.591715 GCCAACACACACGCTCCT 60.592 61.111 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.978874 TTTATGTGCCTACTCAATCATGTAAT 57.021 30.769 0.00 0.00 0.00 1.89
21 22 8.588290 AATAACCAAATTTATGTGCCTACTCA 57.412 30.769 0.00 0.00 0.00 3.41
22 23 8.682710 TGAATAACCAAATTTATGTGCCTACTC 58.317 33.333 0.00 0.00 0.00 2.59
26 27 7.480760 AGTGAATAACCAAATTTATGTGCCT 57.519 32.000 0.00 0.00 0.00 4.75
60 61 4.441634 CCCGGAGTAGAACATCTAACAAGG 60.442 50.000 0.73 0.00 29.58 3.61
62 63 4.346730 TCCCGGAGTAGAACATCTAACAA 58.653 43.478 0.73 0.00 29.58 2.83
66 67 4.088056 CTCTCCCGGAGTAGAACATCTA 57.912 50.000 14.36 0.00 37.30 1.98
77 78 3.451178 TCCAAATCTTAACTCTCCCGGAG 59.549 47.826 8.30 8.30 46.87 4.63
122 124 3.314553 TCTTTTTCGACGTCCTCATGTC 58.685 45.455 10.58 0.00 35.44 3.06
182 185 1.270893 GGAGACCCAGACCAAGTTCAC 60.271 57.143 0.00 0.00 0.00 3.18
258 3920 2.018542 TTTTCGGTTCTAGCCATCGG 57.981 50.000 0.00 0.00 0.00 4.18
259 3921 3.788797 GCAATTTTCGGTTCTAGCCATCG 60.789 47.826 0.00 0.00 0.00 3.84
260 3922 3.378427 AGCAATTTTCGGTTCTAGCCATC 59.622 43.478 0.00 0.00 0.00 3.51
261 3923 3.356290 AGCAATTTTCGGTTCTAGCCAT 58.644 40.909 0.00 0.00 0.00 4.40
262 3924 2.790433 AGCAATTTTCGGTTCTAGCCA 58.210 42.857 0.00 0.00 0.00 4.75
263 3925 3.850122 AAGCAATTTTCGGTTCTAGCC 57.150 42.857 0.00 0.00 0.00 3.93
264 3926 4.385748 CCAAAAGCAATTTTCGGTTCTAGC 59.614 41.667 0.00 0.00 0.00 3.42
265 3927 5.768317 TCCAAAAGCAATTTTCGGTTCTAG 58.232 37.500 0.00 0.00 0.00 2.43
266 3928 5.278758 CCTCCAAAAGCAATTTTCGGTTCTA 60.279 40.000 0.00 0.00 0.00 2.10
267 3929 4.501400 CCTCCAAAAGCAATTTTCGGTTCT 60.501 41.667 0.00 0.00 0.00 3.01
268 3930 3.740832 CCTCCAAAAGCAATTTTCGGTTC 59.259 43.478 0.00 0.00 0.00 3.62
293 3955 3.844090 GAGGCCTCCGTGGAGCTC 61.844 72.222 23.19 4.71 40.69 4.09
394 4081 4.024556 CACTCATTTCAACGTGCTTCTTCT 60.025 41.667 0.00 0.00 0.00 2.85
401 4088 2.783284 CACAACACTCATTTCAACGTGC 59.217 45.455 0.00 0.00 0.00 5.34
481 4175 7.658179 ACCTTGAAATGCGATATGTACATAG 57.342 36.000 19.80 9.31 0.00 2.23
483 4177 8.621532 AATACCTTGAAATGCGATATGTACAT 57.378 30.769 13.93 13.93 0.00 2.29
609 4303 2.165167 CAGGCTGCAGGAATCTTTGAA 58.835 47.619 17.12 0.00 0.00 2.69
610 4304 1.615116 CCAGGCTGCAGGAATCTTTGA 60.615 52.381 17.12 0.00 0.00 2.69
611 4305 0.815734 CCAGGCTGCAGGAATCTTTG 59.184 55.000 17.12 2.11 0.00 2.77
615 4309 1.028868 GTGACCAGGCTGCAGGAATC 61.029 60.000 17.12 0.00 0.00 2.52
616 4310 1.001641 GTGACCAGGCTGCAGGAAT 60.002 57.895 17.12 0.00 0.00 3.01
617 4311 2.431683 GTGACCAGGCTGCAGGAA 59.568 61.111 17.12 2.69 0.00 3.36
618 4312 3.640407 GGTGACCAGGCTGCAGGA 61.640 66.667 17.12 0.00 0.00 3.86
619 4313 2.981914 TTTGGTGACCAGGCTGCAGG 62.982 60.000 17.12 5.32 33.81 4.85
645 4339 8.851145 TGAAAAATAATGCCTGTTGTTGTACTA 58.149 29.630 0.00 0.00 0.00 1.82
825 4519 1.743995 GGATTTCACGGGTCGGGTG 60.744 63.158 0.00 0.00 36.74 4.61
924 4618 1.797211 CTATCCCCTCGCTGTCGTCC 61.797 65.000 0.00 0.00 36.96 4.79
1068 4775 1.941734 GAGGATTCGCGCGAGTCTG 60.942 63.158 40.89 12.94 32.45 3.51
1225 4933 1.636003 GAGGAGGTCAAAGGGGTTCAT 59.364 52.381 0.00 0.00 0.00 2.57
1236 4944 4.710167 TCGTCGCCGAGGAGGTCA 62.710 66.667 5.25 0.00 43.70 4.02
1507 5218 0.108662 TCGCACAGCAGTTGATCGAT 60.109 50.000 0.00 0.00 32.48 3.59
1511 5222 2.167281 AGAGTATCGCACAGCAGTTGAT 59.833 45.455 0.00 0.00 42.67 2.57
1529 5247 8.409371 TGTGATTTCAGATACTAGCAACTAGAG 58.591 37.037 8.57 0.00 37.49 2.43
1563 5290 7.042321 TCACAACGATTCTTTAACAGAACGATT 60.042 33.333 17.68 11.30 44.70 3.34
1564 5291 6.422701 TCACAACGATTCTTTAACAGAACGAT 59.577 34.615 17.68 10.53 44.70 3.73
1567 5294 7.407337 ACTTCACAACGATTCTTTAACAGAAC 58.593 34.615 0.00 0.00 44.70 3.01
1573 5300 5.009210 CCCCAACTTCACAACGATTCTTTAA 59.991 40.000 0.00 0.00 0.00 1.52
1660 5390 3.894427 TGCCTGAAAAACATACACACCAT 59.106 39.130 0.00 0.00 0.00 3.55
1662 5392 4.314740 TTGCCTGAAAAACATACACACC 57.685 40.909 0.00 0.00 0.00 4.16
1663 5393 5.402270 GTCATTGCCTGAAAAACATACACAC 59.598 40.000 0.00 0.00 35.07 3.82
1673 5403 1.073125 TCGGGAGTCATTGCCTGAAAA 59.927 47.619 0.00 0.00 36.65 2.29
1680 5410 1.450312 CCACCTCGGGAGTCATTGC 60.450 63.158 0.00 0.00 0.00 3.56
1687 5417 3.391382 GGACCACCACCTCGGGAG 61.391 72.222 0.00 0.00 40.22 4.30
1711 5441 1.792118 CGCGACCATATCCTCCACGA 61.792 60.000 0.00 0.00 0.00 4.35
2048 5778 4.202223 GGAGATATCTTACTGGGCGACAAA 60.202 45.833 6.70 0.00 0.00 2.83
2053 5783 4.608948 AAAGGAGATATCTTACTGGGCG 57.391 45.455 6.70 0.00 0.00 6.13
2070 5800 4.754114 GCCTACATCATAGAGCAGAAAAGG 59.246 45.833 0.00 0.00 0.00 3.11
2073 5803 6.924913 ATAGCCTACATCATAGAGCAGAAA 57.075 37.500 0.00 0.00 0.00 2.52
2075 5805 6.924913 AAATAGCCTACATCATAGAGCAGA 57.075 37.500 0.00 0.00 0.00 4.26
2260 5990 4.640201 TCCTTTTCTTCTTCCACAACTGTG 59.360 41.667 2.72 2.72 45.23 3.66
2261 5991 4.855340 TCCTTTTCTTCTTCCACAACTGT 58.145 39.130 0.00 0.00 0.00 3.55
2499 6232 2.143876 AAAACAATGGGGCGAGCTAT 57.856 45.000 0.00 0.00 0.00 2.97
2525 6258 4.977963 ACTGACAAATCATGAAGCAAAACG 59.022 37.500 0.00 0.00 33.22 3.60
2539 6272 8.834465 GCATAAGACTCAATATGACTGACAAAT 58.166 33.333 6.20 0.00 32.43 2.32
2587 6320 7.539712 ACATGCAAGACATAATAGTGTGTAC 57.460 36.000 0.00 0.00 36.64 2.90
2718 6451 7.074502 GCACTAATTGAACACTCAAAGAGAAG 58.925 38.462 0.31 0.00 44.64 2.85
2764 6497 9.400638 TGTTACGATTCCAAACAAATCAATTAC 57.599 29.630 0.00 0.00 33.60 1.89
2782 6515 2.752903 GCAACTTTGGGGATGTTACGAT 59.247 45.455 0.00 0.00 0.00 3.73
2869 6602 2.160417 GTGAGCAGAGCAAAAGCGTATT 59.840 45.455 0.00 0.00 0.00 1.89
2873 6606 0.590195 AAGTGAGCAGAGCAAAAGCG 59.410 50.000 0.00 0.00 0.00 4.68
3554 7291 0.548510 GCCTCCTTATCAGCACCCTT 59.451 55.000 0.00 0.00 0.00 3.95
3664 7401 7.331934 TGTTAGTATTTAGCAGCTTGACAAGAG 59.668 37.037 19.51 11.03 0.00 2.85
3747 7487 9.444600 TGACAATATGTAGCACGATATCTAGTA 57.555 33.333 0.34 0.00 0.00 1.82
3748 7488 8.336801 TGACAATATGTAGCACGATATCTAGT 57.663 34.615 0.34 0.00 0.00 2.57
3754 7496 8.145122 TGGTTATTGACAATATGTAGCACGATA 58.855 33.333 8.69 0.00 0.00 2.92
3758 7500 7.553881 AGTGGTTATTGACAATATGTAGCAC 57.446 36.000 21.97 21.97 33.52 4.40
3792 7534 7.730364 AAGACTAACTTTATCAACCACTGTG 57.270 36.000 0.00 0.00 34.94 3.66
3880 7622 8.910351 AGAAATCTGGTTACTAAGATTATGCC 57.090 34.615 11.92 5.35 41.24 4.40
3916 7660 9.820725 GAGATCTCTTAGCATAATATCTGCAAT 57.179 33.333 15.80 0.00 42.15 3.56
3994 7745 4.094294 GCGTGCACAATGGTTCTATCTTAA 59.906 41.667 18.64 0.00 0.00 1.85
4012 7768 3.375299 AGAGAAACAAGATTATGGCGTGC 59.625 43.478 0.00 0.00 0.00 5.34
4019 7775 8.046107 CCTTTCTGGAGAGAGAAACAAGATTAT 58.954 37.037 0.00 0.00 37.10 1.28
4021 7777 6.237154 CCTTTCTGGAGAGAGAAACAAGATT 58.763 40.000 0.00 0.00 37.10 2.40
4023 7779 4.503991 GCCTTTCTGGAGAGAGAAACAAGA 60.504 45.833 0.00 0.00 37.10 3.02
4024 7780 3.750652 GCCTTTCTGGAGAGAGAAACAAG 59.249 47.826 0.00 0.00 37.10 3.16
4026 7782 2.975489 AGCCTTTCTGGAGAGAGAAACA 59.025 45.455 0.00 0.00 37.10 2.83
4027 7783 3.694043 AGCCTTTCTGGAGAGAGAAAC 57.306 47.619 0.00 0.00 37.10 2.78
4029 7785 6.613271 ACAATATAGCCTTTCTGGAGAGAGAA 59.387 38.462 0.00 0.00 38.35 2.87
4030 7786 6.139671 ACAATATAGCCTTTCTGGAGAGAGA 58.860 40.000 0.00 0.00 38.35 3.10
4031 7787 6.418057 ACAATATAGCCTTTCTGGAGAGAG 57.582 41.667 0.00 0.00 38.35 3.20
4032 7788 6.495181 CCTACAATATAGCCTTTCTGGAGAGA 59.505 42.308 0.00 0.00 38.35 3.10
4033 7789 6.696411 CCTACAATATAGCCTTTCTGGAGAG 58.304 44.000 0.00 0.00 38.35 3.20
4034 7790 5.012148 GCCTACAATATAGCCTTTCTGGAGA 59.988 44.000 0.00 0.00 38.35 3.71
4035 7791 5.241662 GCCTACAATATAGCCTTTCTGGAG 58.758 45.833 0.00 0.00 38.35 3.86
4036 7792 4.041691 GGCCTACAATATAGCCTTTCTGGA 59.958 45.833 0.00 0.00 42.34 3.86
4037 7793 4.327680 GGCCTACAATATAGCCTTTCTGG 58.672 47.826 0.00 0.00 42.34 3.86
4044 7800 4.041691 TCCAGAAAGGCCTACAATATAGCC 59.958 45.833 5.16 0.00 46.13 3.93
4049 7805 4.227300 ACATGTCCAGAAAGGCCTACAATA 59.773 41.667 5.16 0.00 37.29 1.90
4161 7917 0.538287 AGGAAGACCAAAGTGCAGGC 60.538 55.000 0.00 0.00 38.94 4.85
4202 7958 3.138304 CAAACGTCAGAGAACAATCCCA 58.862 45.455 0.00 0.00 0.00 4.37
4218 7974 3.317150 TGATGCTCACAGACTACAAACG 58.683 45.455 0.00 0.00 0.00 3.60
4268 8024 0.462047 CACGGCCACCATAGAACCTC 60.462 60.000 2.24 0.00 0.00 3.85
4349 8105 3.873812 GGGGGTGGGCCGTGATAG 61.874 72.222 0.00 0.00 34.97 2.08
4370 8126 1.198094 TCTGGTCCTGAATTGCCGGA 61.198 55.000 5.05 0.00 34.33 5.14
4453 8209 1.181001 CTTGACAGCGTCGACGATAC 58.819 55.000 39.74 28.56 43.02 2.24
4486 8242 2.805671 CCGCGCAGAAATATATGGTGAA 59.194 45.455 8.75 0.00 0.00 3.18
4634 8393 6.013379 AGGACATTAGAAACCTGAAGATCACA 60.013 38.462 0.00 0.00 0.00 3.58
4637 8396 6.760770 CAGAGGACATTAGAAACCTGAAGATC 59.239 42.308 0.00 0.00 32.53 2.75
4685 8444 1.227380 ACTGTATGCAGCGCTAGCC 60.227 57.895 22.98 11.12 46.30 3.93
4700 8459 4.096382 GTCCCCATATTAACACTTGCACTG 59.904 45.833 0.00 0.00 0.00 3.66
4701 8460 4.263727 TGTCCCCATATTAACACTTGCACT 60.264 41.667 0.00 0.00 0.00 4.40
4706 8465 4.862641 AGCTGTCCCCATATTAACACTT 57.137 40.909 0.00 0.00 0.00 3.16
4711 8470 3.322862 TGCCTAGCTGTCCCCATATTAA 58.677 45.455 0.00 0.00 0.00 1.40
4737 8496 0.321346 TCTGATGACTCGCAAGCCAA 59.679 50.000 0.00 0.00 37.18 4.52
4745 8504 4.097741 AGGAGAAAGACATCTGATGACTCG 59.902 45.833 23.59 0.00 34.30 4.18
4751 8510 4.277476 ACGAGAGGAGAAAGACATCTGAT 58.723 43.478 0.00 0.00 0.00 2.90
4752 8511 3.691575 ACGAGAGGAGAAAGACATCTGA 58.308 45.455 0.00 0.00 0.00 3.27
4753 8512 4.172505 CAACGAGAGGAGAAAGACATCTG 58.827 47.826 0.00 0.00 0.00 2.90
4754 8513 3.367910 GCAACGAGAGGAGAAAGACATCT 60.368 47.826 0.00 0.00 0.00 2.90
4809 8589 0.682292 GGGTATAGAGTGGGAGCAGC 59.318 60.000 0.00 0.00 0.00 5.25
4816 8596 1.038280 GGGACACGGGTATAGAGTGG 58.962 60.000 0.00 0.00 39.95 4.00
4817 8597 1.038280 GGGGACACGGGTATAGAGTG 58.962 60.000 0.00 1.86 41.28 3.51
4818 8598 0.632835 TGGGGACACGGGTATAGAGT 59.367 55.000 0.00 0.00 33.40 3.24
4819 8599 3.526211 TGGGGACACGGGTATAGAG 57.474 57.895 0.00 0.00 33.40 2.43
4831 8611 3.070576 GGGTGCTGCAATGGGGAC 61.071 66.667 2.77 0.00 0.00 4.46
4846 8634 3.129502 CATGACCAGTGCAGCGGG 61.130 66.667 6.30 5.30 38.47 6.13
4848 8636 3.051479 TGCATGACCAGTGCAGCG 61.051 61.111 0.00 0.00 46.76 5.18
4859 8647 3.799574 GCTGATGTTGTTTGGTTGCATGA 60.800 43.478 0.00 0.00 0.00 3.07
4876 8701 0.034380 ACTGATGCAAGGCAGCTGAT 60.034 50.000 20.43 1.05 45.80 2.90
4877 8702 0.958876 CACTGATGCAAGGCAGCTGA 60.959 55.000 20.43 0.00 45.80 4.26
4882 8707 2.677524 GCCCACTGATGCAAGGCA 60.678 61.111 0.00 0.00 43.32 4.75
4887 8712 2.034532 CCACTGCCCACTGATGCA 59.965 61.111 0.00 0.00 35.86 3.96
4892 8717 2.044555 CATGAGCCACTGCCCACTG 61.045 63.158 0.00 0.00 38.69 3.66
4924 8749 0.457851 CGAGGACAAGCAGACTAGGG 59.542 60.000 0.00 0.00 0.00 3.53
4927 8752 0.966179 TTGCGAGGACAAGCAGACTA 59.034 50.000 0.00 0.00 44.72 2.59
4928 8753 0.322975 ATTGCGAGGACAAGCAGACT 59.677 50.000 0.00 0.00 44.72 3.24
4929 8754 0.445436 CATTGCGAGGACAAGCAGAC 59.555 55.000 0.00 0.00 44.72 3.51
4930 8755 0.035317 ACATTGCGAGGACAAGCAGA 59.965 50.000 0.00 0.00 44.72 4.26
4931 8756 0.445436 GACATTGCGAGGACAAGCAG 59.555 55.000 0.00 0.00 44.72 4.24
4932 8757 0.250252 TGACATTGCGAGGACAAGCA 60.250 50.000 0.00 0.00 42.15 3.91
4933 8758 0.874390 TTGACATTGCGAGGACAAGC 59.126 50.000 0.00 0.00 31.96 4.01
4935 8760 2.743664 CTCATTGACATTGCGAGGACAA 59.256 45.455 5.99 5.99 0.00 3.18
4937 8762 2.621338 TCTCATTGACATTGCGAGGAC 58.379 47.619 0.00 0.00 0.00 3.85
4938 8763 3.200483 CATCTCATTGACATTGCGAGGA 58.800 45.455 0.00 0.00 0.00 3.71
4940 8765 4.567959 TGTACATCTCATTGACATTGCGAG 59.432 41.667 0.00 0.00 0.00 5.03
4941 8766 4.502962 TGTACATCTCATTGACATTGCGA 58.497 39.130 0.00 0.00 0.00 5.10
4951 8799 4.216257 GGTGTTGCAACTGTACATCTCATT 59.784 41.667 28.61 0.00 0.00 2.57
4957 8805 1.234821 CCGGTGTTGCAACTGTACAT 58.765 50.000 28.61 0.00 0.00 2.29
4958 8806 1.440938 GCCGGTGTTGCAACTGTACA 61.441 55.000 28.61 7.65 0.00 2.90
4959 8807 1.281656 GCCGGTGTTGCAACTGTAC 59.718 57.895 28.61 18.72 0.00 2.90
4960 8808 2.248135 CGCCGGTGTTGCAACTGTA 61.248 57.895 28.61 7.59 0.00 2.74
4961 8809 3.582120 CGCCGGTGTTGCAACTGT 61.582 61.111 28.61 0.00 0.00 3.55
4962 8810 3.276091 TCGCCGGTGTTGCAACTG 61.276 61.111 28.61 18.12 0.00 3.16
4964 8812 3.578272 TGTCGCCGGTGTTGCAAC 61.578 61.111 22.83 22.83 0.00 4.17
4966 8814 4.539083 AGTGTCGCCGGTGTTGCA 62.539 61.111 16.01 10.01 0.00 4.08
4967 8815 3.712881 GAGTGTCGCCGGTGTTGC 61.713 66.667 16.01 7.42 0.00 4.17
4968 8816 2.022129 GAGAGTGTCGCCGGTGTTG 61.022 63.158 16.01 0.00 0.00 3.33
4969 8817 2.338984 GAGAGTGTCGCCGGTGTT 59.661 61.111 16.01 0.00 0.00 3.32
4970 8818 4.039357 CGAGAGTGTCGCCGGTGT 62.039 66.667 16.01 0.00 43.03 4.16
4985 8833 2.507102 GCAAGAGCGCTGCTACGA 60.507 61.111 18.48 0.00 39.88 3.43
4995 8843 2.031163 ACCTGACCGTGCAAGAGC 59.969 61.111 0.00 0.00 42.57 4.09
4996 8844 3.957260 CACCTGACCGTGCAAGAG 58.043 61.111 0.00 0.00 0.00 2.85
5018 8866 7.680588 GCAAATGAGGGATGATACTCAAAAGTC 60.681 40.741 3.84 0.00 45.81 3.01
5021 8869 5.951148 TGCAAATGAGGGATGATACTCAAAA 59.049 36.000 3.84 0.00 45.81 2.44
5023 8871 5.114764 TGCAAATGAGGGATGATACTCAA 57.885 39.130 3.84 0.00 45.81 3.02
5024 8872 4.776435 TGCAAATGAGGGATGATACTCA 57.224 40.909 2.39 2.39 46.62 3.41
5028 8876 6.154877 ACAAATGTTGCAAATGAGGGATGATA 59.845 34.615 0.00 0.00 0.00 2.15
5032 8880 4.895668 ACAAATGTTGCAAATGAGGGAT 57.104 36.364 0.00 0.00 0.00 3.85
5033 8881 4.100653 TGAACAAATGTTGCAAATGAGGGA 59.899 37.500 0.00 0.00 38.56 4.20
5034 8882 4.378774 TGAACAAATGTTGCAAATGAGGG 58.621 39.130 0.00 0.00 38.56 4.30
5037 8885 7.789273 AGAATTGAACAAATGTTGCAAATGA 57.211 28.000 0.00 0.00 38.56 2.57
5039 8887 8.339714 CAGAAGAATTGAACAAATGTTGCAAAT 58.660 29.630 0.00 2.00 38.56 2.32
5040 8888 7.201626 CCAGAAGAATTGAACAAATGTTGCAAA 60.202 33.333 0.00 0.00 38.56 3.68
5043 8891 5.754890 ACCAGAAGAATTGAACAAATGTTGC 59.245 36.000 3.05 0.00 38.56 4.17
5044 8892 6.979817 TCACCAGAAGAATTGAACAAATGTTG 59.020 34.615 3.05 0.00 38.56 3.33
5045 8893 6.980397 GTCACCAGAAGAATTGAACAAATGTT 59.020 34.615 0.00 0.00 41.64 2.71
5046 8894 6.322201 AGTCACCAGAAGAATTGAACAAATGT 59.678 34.615 0.00 0.00 0.00 2.71
5047 8895 6.742109 AGTCACCAGAAGAATTGAACAAATG 58.258 36.000 0.00 0.00 0.00 2.32
5048 8896 6.966534 AGTCACCAGAAGAATTGAACAAAT 57.033 33.333 0.00 0.00 0.00 2.32
5049 8897 6.603201 AGAAGTCACCAGAAGAATTGAACAAA 59.397 34.615 0.00 0.00 0.00 2.83
5050 8898 6.122277 AGAAGTCACCAGAAGAATTGAACAA 58.878 36.000 0.00 0.00 0.00 2.83
5051 8899 5.684704 AGAAGTCACCAGAAGAATTGAACA 58.315 37.500 0.00 0.00 0.00 3.18
5053 8901 5.765182 GGAAGAAGTCACCAGAAGAATTGAA 59.235 40.000 0.00 0.00 0.00 2.69
5054 8902 5.163205 TGGAAGAAGTCACCAGAAGAATTGA 60.163 40.000 0.00 0.00 0.00 2.57
5055 8903 5.065914 TGGAAGAAGTCACCAGAAGAATTG 58.934 41.667 0.00 0.00 0.00 2.32
5056 8904 5.310409 TGGAAGAAGTCACCAGAAGAATT 57.690 39.130 0.00 0.00 0.00 2.17
5057 8905 4.982241 TGGAAGAAGTCACCAGAAGAAT 57.018 40.909 0.00 0.00 0.00 2.40
5066 8974 1.666189 GCGGCTTATGGAAGAAGTCAC 59.334 52.381 0.00 0.00 34.25 3.67
5070 8978 1.587547 GGAGCGGCTTATGGAAGAAG 58.412 55.000 2.97 0.00 34.25 2.85
5088 8996 2.684499 GCTTCTGGAAGGGGAGGGG 61.684 68.421 11.61 0.00 38.80 4.79
5097 9005 1.909700 GGAACCATGTGCTTCTGGAA 58.090 50.000 6.09 0.00 36.35 3.53
5098 9006 3.650647 GGAACCATGTGCTTCTGGA 57.349 52.632 6.09 0.00 36.35 3.86
5117 9027 3.025322 AGTCACATCCTCCCTGAGTAG 57.975 52.381 0.00 0.00 0.00 2.57
5118 9028 3.474798 AAGTCACATCCTCCCTGAGTA 57.525 47.619 0.00 0.00 0.00 2.59
5119 9029 2.334006 AAGTCACATCCTCCCTGAGT 57.666 50.000 0.00 0.00 0.00 3.41
5123 9033 2.025226 TCTCGTAAGTCACATCCTCCCT 60.025 50.000 0.00 0.00 39.48 4.20
5124 9034 2.376109 TCTCGTAAGTCACATCCTCCC 58.624 52.381 0.00 0.00 39.48 4.30
5126 9036 4.966965 TCTTCTCGTAAGTCACATCCTC 57.033 45.455 1.29 0.00 39.48 3.71
5131 9041 2.626266 TGCCTTCTTCTCGTAAGTCACA 59.374 45.455 1.29 0.00 39.48 3.58
5167 9085 1.620323 GAATGCAGCCAGGACCTTTTT 59.380 47.619 0.00 0.00 0.00 1.94
5169 9087 0.962356 CGAATGCAGCCAGGACCTTT 60.962 55.000 0.00 0.00 0.00 3.11
5170 9088 1.377725 CGAATGCAGCCAGGACCTT 60.378 57.895 0.00 0.00 0.00 3.50
5171 9089 2.270205 CGAATGCAGCCAGGACCT 59.730 61.111 0.00 0.00 0.00 3.85
5180 9098 1.344226 TTCGTGCGAGTCGAATGCAG 61.344 55.000 18.61 0.00 41.33 4.41
5184 9102 0.782384 GTTGTTCGTGCGAGTCGAAT 59.218 50.000 18.61 0.00 46.24 3.34
5186 9104 2.007114 CGTTGTTCGTGCGAGTCGA 61.007 57.895 18.61 0.00 35.50 4.20
5204 9143 4.187694 TGACCATTTGGCTTTGAAACAAC 58.812 39.130 0.00 0.00 39.32 3.32
5227 9166 3.443045 CAATGTCCAGGCCACGGC 61.443 66.667 5.01 0.00 41.06 5.68
5233 9172 5.933463 TCAAAATGAAATTCAATGTCCAGGC 59.067 36.000 0.00 0.00 33.67 4.85
5241 9180 6.591062 CGGACCATGTCAAAATGAAATTCAAT 59.409 34.615 0.00 0.00 31.76 2.57
5244 9183 5.708948 TCGGACCATGTCAAAATGAAATTC 58.291 37.500 0.00 0.00 31.76 2.17
5246 9185 5.720371 TTCGGACCATGTCAAAATGAAAT 57.280 34.783 0.00 0.00 33.68 2.17
5247 9186 5.720371 ATTCGGACCATGTCAAAATGAAA 57.280 34.783 0.00 0.00 33.68 2.69
5248 9187 5.476599 AGAATTCGGACCATGTCAAAATGAA 59.523 36.000 0.00 0.00 33.68 2.57
5250 9189 5.314923 AGAATTCGGACCATGTCAAAATG 57.685 39.130 0.00 0.00 33.68 2.32
5251 9190 5.336690 CCAAGAATTCGGACCATGTCAAAAT 60.337 40.000 0.00 0.00 33.68 1.82
5252 9191 4.022416 CCAAGAATTCGGACCATGTCAAAA 60.022 41.667 0.00 0.00 33.68 2.44
5253 9192 3.505680 CCAAGAATTCGGACCATGTCAAA 59.494 43.478 0.00 0.00 33.68 2.69
5254 9193 3.081061 CCAAGAATTCGGACCATGTCAA 58.919 45.455 0.00 0.00 33.68 3.18
5255 9194 2.304470 TCCAAGAATTCGGACCATGTCA 59.696 45.455 0.00 0.00 33.68 3.58
5256 9195 2.985896 TCCAAGAATTCGGACCATGTC 58.014 47.619 0.00 0.00 0.00 3.06
5257 9196 3.054434 TCATCCAAGAATTCGGACCATGT 60.054 43.478 4.41 0.00 33.05 3.21
5258 9197 3.544684 TCATCCAAGAATTCGGACCATG 58.455 45.455 4.41 3.45 33.05 3.66
5259 9198 3.931907 TCATCCAAGAATTCGGACCAT 57.068 42.857 4.41 0.00 33.05 3.55
5260 9199 3.931907 ATCATCCAAGAATTCGGACCA 57.068 42.857 4.41 0.00 33.05 4.02
5261 9200 6.884280 ATAAATCATCCAAGAATTCGGACC 57.116 37.500 4.41 0.00 33.05 4.46
5278 9217 9.532697 CAGCAATGCAACAAAGTAAAATAAATC 57.467 29.630 8.35 0.00 0.00 2.17
5279 9218 9.270640 TCAGCAATGCAACAAAGTAAAATAAAT 57.729 25.926 8.35 0.00 0.00 1.40
5280 9219 8.654230 TCAGCAATGCAACAAAGTAAAATAAA 57.346 26.923 8.35 0.00 0.00 1.40
5281 9220 8.654230 TTCAGCAATGCAACAAAGTAAAATAA 57.346 26.923 8.35 0.00 0.00 1.40
5282 9221 8.830201 ATTCAGCAATGCAACAAAGTAAAATA 57.170 26.923 8.35 0.00 0.00 1.40
5283 9222 7.733402 ATTCAGCAATGCAACAAAGTAAAAT 57.267 28.000 8.35 0.00 0.00 1.82
5288 9231 4.271533 CACAATTCAGCAATGCAACAAAGT 59.728 37.500 8.35 0.00 0.00 2.66
5292 9235 3.729862 TCACAATTCAGCAATGCAACA 57.270 38.095 8.35 0.00 0.00 3.33
5301 9244 5.947443 AGCAGAAGTTTATCACAATTCAGC 58.053 37.500 0.00 0.00 33.95 4.26
5314 9257 6.150318 CGTCGACCATATATAGCAGAAGTTT 58.850 40.000 10.58 0.00 0.00 2.66
5317 9260 5.089411 CACGTCGACCATATATAGCAGAAG 58.911 45.833 10.58 0.00 0.00 2.85
5320 9263 3.172050 GCACGTCGACCATATATAGCAG 58.828 50.000 10.58 0.00 0.00 4.24
5324 9267 3.759618 TCCATGCACGTCGACCATATATA 59.240 43.478 10.58 0.00 0.00 0.86
5325 9268 2.560981 TCCATGCACGTCGACCATATAT 59.439 45.455 10.58 0.00 0.00 0.86
5332 9275 0.800683 TCGAATCCATGCACGTCGAC 60.801 55.000 5.18 5.18 35.92 4.20
5349 9292 5.212194 CACACTTTTTATGTCAAACCCTCG 58.788 41.667 0.00 0.00 0.00 4.63
5350 9293 6.039382 AGACACACTTTTTATGTCAAACCCTC 59.961 38.462 6.40 0.00 44.26 4.30
5354 9297 6.691388 GGACAGACACACTTTTTATGTCAAAC 59.309 38.462 6.40 0.00 44.26 2.93
5360 9303 3.364964 GCCGGACAGACACACTTTTTATG 60.365 47.826 5.05 0.00 0.00 1.90
5363 9306 1.021968 GCCGGACAGACACACTTTTT 58.978 50.000 5.05 0.00 0.00 1.94
5372 9315 3.135994 TCAAAAGTTTAGCCGGACAGAC 58.864 45.455 5.05 0.00 0.00 3.51
5373 9316 3.399330 CTCAAAAGTTTAGCCGGACAGA 58.601 45.455 5.05 0.00 0.00 3.41
5379 9322 0.526211 GCCCCTCAAAAGTTTAGCCG 59.474 55.000 0.00 0.00 0.00 5.52
5380 9323 1.546029 CAGCCCCTCAAAAGTTTAGCC 59.454 52.381 0.00 0.00 0.00 3.93
5383 9326 1.627864 GGCAGCCCCTCAAAAGTTTA 58.372 50.000 0.00 0.00 0.00 2.01
5399 9342 2.115052 AAGACCATTGGCACGGCA 59.885 55.556 1.54 0.00 0.00 5.69
5401 9344 1.804396 TTGCAAGACCATTGGCACGG 61.804 55.000 1.54 0.57 35.74 4.94
5403 9346 1.606224 CCTTTGCAAGACCATTGGCAC 60.606 52.381 1.54 0.00 35.74 5.01
5404 9347 0.680618 CCTTTGCAAGACCATTGGCA 59.319 50.000 1.54 0.00 0.00 4.92
5407 9350 2.224113 ACAAGCCTTTGCAAGACCATTG 60.224 45.455 0.00 5.69 41.13 2.82
5408 9351 2.036346 GACAAGCCTTTGCAAGACCATT 59.964 45.455 0.00 0.00 41.13 3.16
5410 9353 1.032014 GACAAGCCTTTGCAAGACCA 58.968 50.000 0.00 0.00 41.13 4.02
5412 9355 1.032014 TGGACAAGCCTTTGCAAGAC 58.968 50.000 0.00 0.00 41.13 3.01
5413 9356 1.999648 ATGGACAAGCCTTTGCAAGA 58.000 45.000 0.00 0.00 41.13 3.02
5414 9357 2.409975 CAATGGACAAGCCTTTGCAAG 58.590 47.619 0.00 0.00 42.63 4.01
5415 9358 1.070445 CCAATGGACAAGCCTTTGCAA 59.930 47.619 0.00 0.00 45.67 4.08
5416 9359 0.680618 CCAATGGACAAGCCTTTGCA 59.319 50.000 0.00 0.00 45.67 4.08
5417 9360 0.681175 ACCAATGGACAAGCCTTTGC 59.319 50.000 6.16 0.00 45.67 3.68
5418 9361 4.806640 AATACCAATGGACAAGCCTTTG 57.193 40.909 6.16 0.00 46.26 2.77
5419 9362 6.252995 TCTAAATACCAATGGACAAGCCTTT 58.747 36.000 6.16 0.00 37.63 3.11
5420 9363 5.826643 TCTAAATACCAATGGACAAGCCTT 58.173 37.500 6.16 0.00 37.63 4.35
5421 9364 5.440610 CTCTAAATACCAATGGACAAGCCT 58.559 41.667 6.16 0.00 37.63 4.58
5423 9366 5.297029 GTCCTCTAAATACCAATGGACAAGC 59.703 44.000 6.16 0.00 41.29 4.01
5425 9368 5.251932 TGGTCCTCTAAATACCAATGGACAA 59.748 40.000 6.16 0.00 42.84 3.18
5426 9369 4.785914 TGGTCCTCTAAATACCAATGGACA 59.214 41.667 6.16 0.00 42.84 4.02
5435 9383 6.524101 TGGCAAATTTGGTCCTCTAAATAC 57.476 37.500 19.47 0.00 34.49 1.89
5436 9384 7.546250 TTTGGCAAATTTGGTCCTCTAAATA 57.454 32.000 19.47 0.00 34.49 1.40
5437 9385 6.432403 TTTGGCAAATTTGGTCCTCTAAAT 57.568 33.333 19.47 0.00 36.54 1.40
5441 9389 3.056607 CGATTTGGCAAATTTGGTCCTCT 60.057 43.478 25.02 0.90 0.00 3.69
5449 9397 7.651808 CATCTATAGTCCGATTTGGCAAATTT 58.348 34.615 25.02 6.34 37.80 1.82
5450 9398 6.294176 GCATCTATAGTCCGATTTGGCAAATT 60.294 38.462 25.02 12.34 37.80 1.82
5460 9408 3.696045 AGAGCTGCATCTATAGTCCGAT 58.304 45.455 1.02 0.00 0.00 4.18
5461 9409 3.147553 AGAGCTGCATCTATAGTCCGA 57.852 47.619 1.02 0.00 0.00 4.55
5463 9411 4.082245 GGAGAAGAGCTGCATCTATAGTCC 60.082 50.000 1.02 0.00 34.66 3.85
5464 9412 4.082245 GGGAGAAGAGCTGCATCTATAGTC 60.082 50.000 1.02 0.00 36.54 2.59
5466 9414 4.088634 AGGGAGAAGAGCTGCATCTATAG 58.911 47.826 1.02 0.00 36.54 1.31
5472 9856 0.326427 AGGAGGGAGAAGAGCTGCAT 60.326 55.000 1.02 0.00 36.54 3.96
5476 9860 0.415429 TCCAAGGAGGGAGAAGAGCT 59.585 55.000 0.00 0.00 38.24 4.09
5486 9870 1.077858 GGCTGCTTCTCCAAGGAGG 60.078 63.158 15.74 2.42 45.85 4.30
5493 9877 1.277557 TCTTCTGAAGGCTGCTTCTCC 59.722 52.381 16.83 0.00 34.64 3.71
5494 9878 2.233431 TCTCTTCTGAAGGCTGCTTCTC 59.767 50.000 16.83 0.00 34.64 2.87
5504 9888 5.467035 AAGTCACCTCTTCTCTTCTGAAG 57.533 43.478 11.18 11.18 43.36 3.02
5508 9892 5.014755 TCTCCTAAGTCACCTCTTCTCTTCT 59.985 44.000 0.00 0.00 0.00 2.85
5509 9893 5.258051 TCTCCTAAGTCACCTCTTCTCTTC 58.742 45.833 0.00 0.00 0.00 2.87
5511 9895 4.538490 TCTCTCCTAAGTCACCTCTTCTCT 59.462 45.833 0.00 0.00 0.00 3.10
5516 9900 3.880117 GCCTTCTCTCCTAAGTCACCTCT 60.880 52.174 0.00 0.00 0.00 3.69
5528 9912 8.860128 CGTTTATTTTTATTTTGCCTTCTCTCC 58.140 33.333 0.00 0.00 0.00 3.71
5543 9927 5.334260 CGGCAAGTCTGTCCGTTTATTTTTA 60.334 40.000 5.19 0.00 37.42 1.52
5550 9954 0.878961 GTCGGCAAGTCTGTCCGTTT 60.879 55.000 11.41 0.00 40.73 3.60
5591 9995 1.724582 GGAGCGTGTGTGTTGGCTTT 61.725 55.000 0.00 0.00 35.54 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.