Multiple sequence alignment - TraesCS1A01G352700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G352700 chr1A 100.000 5525 0 0 1 5525 536665512 536659988 0.000000e+00 10203.0
1 TraesCS1A01G352700 chr1A 95.349 129 1 1 2106 2229 536663283 536663155 3.380000e-47 200.0
2 TraesCS1A01G352700 chr1A 95.349 129 1 1 2230 2358 536663407 536663284 3.380000e-47 200.0
3 TraesCS1A01G352700 chr1D 92.227 2753 141 31 2793 5525 441301029 441303728 0.000000e+00 3831.0
4 TraesCS1A01G352700 chr1D 87.948 1311 83 31 847 2111 441299342 441300623 0.000000e+00 1476.0
5 TraesCS1A01G352700 chr1D 89.255 819 30 17 1 798 441298472 441299253 0.000000e+00 972.0
6 TraesCS1A01G352700 chr1D 93.797 403 20 3 2304 2701 441300618 441301020 7.920000e-168 601.0
7 TraesCS1A01G352700 chr1D 98.077 52 1 0 2175 2226 441300618 441300669 2.120000e-14 91.6
8 TraesCS1A01G352700 chr1B 92.234 2408 120 24 2230 4609 599337713 599340081 0.000000e+00 3349.0
9 TraesCS1A01G352700 chr1B 85.882 1452 110 42 826 2229 599336421 599337825 0.000000e+00 1458.0
10 TraesCS1A01G352700 chr1B 90.435 920 67 11 4608 5525 599340109 599341009 0.000000e+00 1192.0
11 TraesCS1A01G352700 chr1B 85.109 732 45 15 1 726 599334352 599335025 0.000000e+00 689.0
12 TraesCS1A01G352700 chr1B 100.000 59 0 0 2717 2775 461453222 461453280 5.850000e-20 110.0
13 TraesCS1A01G352700 chr1B 100.000 59 0 0 2717 2775 583499757 583499699 5.850000e-20 110.0
14 TraesCS1A01G352700 chr1B 91.667 60 4 1 746 804 599336302 599336361 1.280000e-11 82.4
15 TraesCS1A01G352700 chr4B 77.411 819 121 36 3194 3971 404488158 404487363 3.950000e-116 429.0
16 TraesCS1A01G352700 chr2A 77.150 814 119 37 3194 3971 568279474 568278692 1.430000e-110 411.0
17 TraesCS1A01G352700 chr2A 77.027 814 120 39 3194 3971 546790719 546791501 6.660000e-109 405.0
18 TraesCS1A01G352700 chr2A 76.658 814 124 38 3194 3971 547001083 547001866 1.870000e-104 390.0
19 TraesCS1A01G352700 chr2A 84.756 164 22 3 3804 3967 567731858 567731698 1.590000e-35 161.0
20 TraesCS1A01G352700 chr2B 86.034 179 20 3 3793 3970 494255840 494255666 2.630000e-43 187.0
21 TraesCS1A01G352700 chr7D 100.000 59 0 0 2717 2775 307063899 307063841 5.850000e-20 110.0
22 TraesCS1A01G352700 chr7D 100.000 59 0 0 2717 2775 382013873 382013815 5.850000e-20 110.0
23 TraesCS1A01G352700 chr7D 100.000 59 0 0 2717 2775 601305507 601305449 5.850000e-20 110.0
24 TraesCS1A01G352700 chr6D 100.000 59 0 0 2717 2775 83954604 83954546 5.850000e-20 110.0
25 TraesCS1A01G352700 chr4D 100.000 59 0 0 2717 2775 6630100 6630158 5.850000e-20 110.0
26 TraesCS1A01G352700 chr4D 100.000 59 0 0 2717 2775 123368641 123368699 5.850000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G352700 chr1A 536659988 536665512 5524 True 3534.333333 10203 96.899333 1 5525 3 chr1A.!!$R1 5524
1 TraesCS1A01G352700 chr1D 441298472 441303728 5256 False 1394.320000 3831 92.260800 1 5525 5 chr1D.!!$F1 5524
2 TraesCS1A01G352700 chr1B 599334352 599341009 6657 False 1354.080000 3349 89.065400 1 5525 5 chr1B.!!$F2 5524
3 TraesCS1A01G352700 chr4B 404487363 404488158 795 True 429.000000 429 77.411000 3194 3971 1 chr4B.!!$R1 777
4 TraesCS1A01G352700 chr2A 568278692 568279474 782 True 411.000000 411 77.150000 3194 3971 1 chr2A.!!$R2 777
5 TraesCS1A01G352700 chr2A 546790719 546791501 782 False 405.000000 405 77.027000 3194 3971 1 chr2A.!!$F1 777
6 TraesCS1A01G352700 chr2A 547001083 547001866 783 False 390.000000 390 76.658000 3194 3971 1 chr2A.!!$F2 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 461 0.110295 TGCTTGCTAAAGTCAGGGCA 59.890 50.0 0.0 0.0 35.69 5.36 F
2138 3566 0.250989 TTGGTGATTCGTTGGGTCCC 60.251 55.0 0.0 0.0 0.00 4.46 F
2154 3582 0.402861 TCCCCAAAGGAACTGTCCCT 60.403 55.0 0.0 0.0 46.30 4.20 F
2155 3583 0.482887 CCCCAAAGGAACTGTCCCTT 59.517 55.0 0.0 0.0 46.30 3.95 F
3396 4863 1.029681 ACCGCTGTCCTTTTGGTTTC 58.970 50.0 0.0 0.0 41.38 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 3671 0.250989 GGGACCCAACGAATCACCAA 60.251 55.000 5.33 0.0 0.00 3.67 R
3111 4554 1.005037 CGTACTGCCAACTGCCTGA 60.005 57.895 0.00 0.0 40.16 3.86 R
4057 5550 2.045926 CTCGCCCCAGTTTCCCTG 60.046 66.667 0.00 0.0 41.15 4.45 R
4155 5648 1.203025 AGTCTCGGTTACCCACAGTCT 60.203 52.381 0.00 0.0 0.00 3.24 R
4853 6379 0.990374 ATGAGCCTTCTTGTCCTGCT 59.010 50.000 0.00 0.0 34.40 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.311859 CAAGTGAAGCAGCTGTGGAA 58.688 50.000 16.64 0.00 0.00 3.53
104 105 1.448540 CATCGCTCTGTTCGGCCTT 60.449 57.895 0.00 0.00 0.00 4.35
137 138 1.805945 GTTCTGCGTCGGCGAGATT 60.806 57.895 16.53 0.00 44.10 2.40
140 141 4.435436 TGCGTCGGCGAGATTGCT 62.435 61.111 16.53 0.00 44.10 3.91
158 159 2.132089 CTGGCCGGGGTTTCACCTTA 62.132 60.000 2.57 0.00 38.64 2.69
191 192 1.743252 CTGAGCGCCTTCCTTCCAC 60.743 63.158 2.29 0.00 0.00 4.02
285 287 3.729462 CGTGCGAAGTTTTGGTTTTCTGA 60.729 43.478 0.00 0.00 0.00 3.27
286 288 4.170256 GTGCGAAGTTTTGGTTTTCTGAA 58.830 39.130 0.00 0.00 0.00 3.02
387 389 1.573026 TTGTCGCACGCTTAGTTGAA 58.427 45.000 0.00 0.00 0.00 2.69
451 453 1.000060 TGCCTTGCTTGCTTGCTAAAG 60.000 47.619 3.47 0.46 36.41 1.85
459 461 0.110295 TGCTTGCTAAAGTCAGGGCA 59.890 50.000 0.00 0.00 35.69 5.36
460 462 1.247567 GCTTGCTAAAGTCAGGGCAA 58.752 50.000 0.00 0.00 41.47 4.52
461 463 1.613437 GCTTGCTAAAGTCAGGGCAAA 59.387 47.619 0.00 0.00 42.76 3.68
462 464 2.232208 GCTTGCTAAAGTCAGGGCAAAT 59.768 45.455 0.00 0.00 42.76 2.32
463 465 3.306294 GCTTGCTAAAGTCAGGGCAAATT 60.306 43.478 0.00 0.00 42.76 1.82
464 466 4.082245 GCTTGCTAAAGTCAGGGCAAATTA 60.082 41.667 0.00 0.00 42.76 1.40
465 467 5.643379 TTGCTAAAGTCAGGGCAAATTAG 57.357 39.130 0.00 0.00 40.91 1.73
466 468 4.016444 TGCTAAAGTCAGGGCAAATTAGG 58.984 43.478 0.00 0.00 0.00 2.69
467 469 3.181486 GCTAAAGTCAGGGCAAATTAGGC 60.181 47.826 0.00 0.00 0.00 3.93
468 470 2.907458 AAGTCAGGGCAAATTAGGCT 57.093 45.000 0.00 0.00 0.00 4.58
469 471 2.426842 AGTCAGGGCAAATTAGGCTC 57.573 50.000 0.00 0.00 0.00 4.70
470 472 1.918957 AGTCAGGGCAAATTAGGCTCT 59.081 47.619 0.00 0.00 44.64 4.09
471 473 2.310052 AGTCAGGGCAAATTAGGCTCTT 59.690 45.455 1.82 0.00 39.61 2.85
472 474 2.685388 GTCAGGGCAAATTAGGCTCTTC 59.315 50.000 1.82 0.00 39.61 2.87
473 475 2.027385 CAGGGCAAATTAGGCTCTTCC 58.973 52.381 1.82 0.00 39.61 3.46
474 476 1.640670 AGGGCAAATTAGGCTCTTCCA 59.359 47.619 0.00 0.00 39.61 3.53
475 477 2.027385 GGGCAAATTAGGCTCTTCCAG 58.973 52.381 0.00 0.00 37.29 3.86
550 569 3.577848 TCCCCATTTCACTTGGTTGAATG 59.422 43.478 0.00 0.00 35.42 2.67
551 570 3.577848 CCCCATTTCACTTGGTTGAATGA 59.422 43.478 0.00 0.00 35.42 2.57
552 571 4.040217 CCCCATTTCACTTGGTTGAATGAA 59.960 41.667 0.00 0.00 35.42 2.57
553 572 5.280113 CCCCATTTCACTTGGTTGAATGAAT 60.280 40.000 0.00 0.00 35.42 2.57
577 596 6.301486 TCCTGGATGGATGAATTTATCTGTG 58.699 40.000 9.80 0.00 40.56 3.66
595 614 0.751452 TGATGTTTGCCTTGCTTGCA 59.249 45.000 0.00 0.00 36.84 4.08
607 626 4.567971 CCTTGCTTGCATACCAAAATCAA 58.432 39.130 0.00 0.00 31.94 2.57
613 632 4.822685 TGCATACCAAAATCAAGGCAAT 57.177 36.364 0.00 0.00 0.00 3.56
614 633 4.505808 TGCATACCAAAATCAAGGCAATG 58.494 39.130 0.00 0.00 0.00 2.82
615 634 4.222366 TGCATACCAAAATCAAGGCAATGA 59.778 37.500 0.00 0.00 0.00 2.57
616 635 5.104859 TGCATACCAAAATCAAGGCAATGAT 60.105 36.000 0.49 0.49 41.74 2.45
636 675 1.640149 TCTCCCCATTTCATTGCTCCA 59.360 47.619 0.00 0.00 0.00 3.86
680 719 2.351418 TGTGTTCTTTTGTCACGCTGAG 59.649 45.455 0.00 0.00 35.20 3.35
697 736 7.386573 TCACGCTGAGTTTGTAAATCTTAATCA 59.613 33.333 0.00 0.00 0.00 2.57
716 755 4.031418 TCAAAGCGATTGCATAACCATG 57.969 40.909 7.90 0.00 46.23 3.66
732 2013 2.279741 CCATGTCACCAGTTCATACCG 58.720 52.381 0.00 0.00 0.00 4.02
740 2021 2.288666 CCAGTTCATACCGGTGATTGG 58.711 52.381 19.93 13.52 31.32 3.16
742 2023 2.936498 CAGTTCATACCGGTGATTGGTC 59.064 50.000 19.93 8.82 40.96 4.02
822 2138 3.847602 CTCCCTGCTGCTCTCCCG 61.848 72.222 0.00 0.00 0.00 5.14
934 2289 2.333462 CCCTCTCCCTCCCCCACTA 61.333 68.421 0.00 0.00 0.00 2.74
953 2308 0.395312 AAAAACCGAGGAAGAGCCGA 59.605 50.000 0.00 0.00 43.43 5.54
1226 2607 0.317479 CTCAGAGACCGTCCCGTTTT 59.683 55.000 0.00 0.00 0.00 2.43
1232 2613 2.330041 CCGTCCCGTTTTGTGCAC 59.670 61.111 10.75 10.75 0.00 4.57
1234 2615 1.010125 CGTCCCGTTTTGTGCACAG 60.010 57.895 20.59 8.28 0.00 3.66
1237 2618 1.135228 GTCCCGTTTTGTGCACAGTTT 60.135 47.619 20.59 0.00 0.00 2.66
1238 2619 2.097791 GTCCCGTTTTGTGCACAGTTTA 59.902 45.455 20.59 1.55 0.00 2.01
1240 2621 2.098443 CCCGTTTTGTGCACAGTTTACT 59.902 45.455 20.59 0.00 0.00 2.24
1261 2642 3.075866 GCAGAATTAGCAGGATTGTGC 57.924 47.619 11.17 11.17 43.45 4.57
1270 2651 3.923017 GCAGGATTGTGCTAGTTTTGT 57.077 42.857 0.00 0.00 40.54 2.83
1337 2722 1.452108 GAACGGATTCAGCAGGGGG 60.452 63.158 0.00 0.00 34.70 5.40
1410 2795 4.021925 AGCGAGCCCTCCACCAAC 62.022 66.667 0.00 0.00 0.00 3.77
1422 2807 3.610911 CTCCACCAACAGGTTAGATTCC 58.389 50.000 0.00 0.00 31.84 3.01
1435 2820 3.537206 GATTCCTCCCATCCGGCGG 62.537 68.421 22.51 22.51 0.00 6.13
1477 2865 1.609555 GTACAGTGAGCCCTCCGATAG 59.390 57.143 0.00 0.00 0.00 2.08
1497 2885 6.405286 CGATAGGTTCTGACTGAGAGTTTCAT 60.405 42.308 0.00 0.00 34.68 2.57
1514 2902 2.028130 TCATTTGTGGTTGTGGTGGTC 58.972 47.619 0.00 0.00 0.00 4.02
1618 3014 0.610232 GCCAACTGGATCAGGTGCTT 60.610 55.000 7.39 0.00 46.70 3.91
1619 3015 1.915141 CCAACTGGATCAGGTGCTTT 58.085 50.000 7.39 0.00 46.70 3.51
1620 3016 2.879756 GCCAACTGGATCAGGTGCTTTA 60.880 50.000 7.39 0.00 46.70 1.85
1622 3018 3.307691 CCAACTGGATCAGGTGCTTTAGA 60.308 47.826 7.39 0.00 46.70 2.10
1624 3020 4.640771 ACTGGATCAGGTGCTTTAGAAA 57.359 40.909 0.00 0.00 35.51 2.52
1626 3022 4.042187 ACTGGATCAGGTGCTTTAGAAAGT 59.958 41.667 4.05 0.00 35.72 2.66
1628 3024 3.127721 GGATCAGGTGCTTTAGAAAGTGC 59.872 47.826 4.05 0.00 38.28 4.40
1632 3028 3.254166 CAGGTGCTTTAGAAAGTGCATGT 59.746 43.478 4.05 0.00 38.28 3.21
1646 3042 3.068024 AGTGCATGTGTTTTACCACTTGG 59.932 43.478 0.00 0.00 39.56 3.61
1653 3049 4.339814 TGTGTTTTACCACTTGGATGTTCC 59.660 41.667 1.14 0.00 38.94 3.62
1666 3062 4.151121 TGGATGTTCCAATGTCATGTTGT 58.849 39.130 0.00 0.00 45.00 3.32
1686 3082 3.005578 TGTTTGCTTGCTAATGTGATGCA 59.994 39.130 0.00 0.00 34.69 3.96
1707 3103 4.333926 GCAATTGGATCAGGTAAGACACTC 59.666 45.833 7.72 0.00 0.00 3.51
1710 3106 3.099905 TGGATCAGGTAAGACACTCCTG 58.900 50.000 4.30 4.30 46.94 3.86
1783 3181 5.335583 GCAACAGCAATTACACAGGTAATCA 60.336 40.000 1.01 0.00 46.79 2.57
1786 3184 5.357878 ACAGCAATTACACAGGTAATCATGG 59.642 40.000 0.00 0.00 46.79 3.66
1787 3185 4.339247 AGCAATTACACAGGTAATCATGGC 59.661 41.667 0.00 3.95 46.79 4.40
1795 3193 2.352651 CAGGTAATCATGGCTTGTGTCG 59.647 50.000 0.00 0.00 0.00 4.35
1804 3202 2.562912 CTTGTGTCGCATGCCACC 59.437 61.111 20.10 9.92 0.00 4.61
1821 3219 3.152341 CCACCAGAAAGCTCTGTTTGAT 58.848 45.455 2.63 0.00 46.71 2.57
1831 3250 2.416431 GCTCTGTTTGATGCATTGGTCC 60.416 50.000 0.00 0.00 0.00 4.46
1837 3256 4.178540 GTTTGATGCATTGGTCCTTCATG 58.821 43.478 0.00 0.00 0.00 3.07
1839 3258 2.029623 GATGCATTGGTCCTTCATGCT 58.970 47.619 17.18 7.43 38.88 3.79
1841 3260 3.084536 TGCATTGGTCCTTCATGCTTA 57.915 42.857 17.18 1.87 38.88 3.09
1844 3263 3.304257 GCATTGGTCCTTCATGCTTATCG 60.304 47.826 11.83 0.00 35.55 2.92
1850 3269 2.016318 CCTTCATGCTTATCGTGGCAA 58.984 47.619 0.00 0.00 41.90 4.52
1851 3270 2.032550 CCTTCATGCTTATCGTGGCAAG 59.967 50.000 0.00 0.00 41.90 4.01
1853 3272 2.984562 TCATGCTTATCGTGGCAAGAA 58.015 42.857 7.31 0.00 41.90 2.52
1854 3273 2.938451 TCATGCTTATCGTGGCAAGAAG 59.062 45.455 7.31 2.43 41.90 2.85
1930 3349 1.831736 GCTCTTTCAGGCTGGGTACTA 59.168 52.381 15.73 0.00 0.00 1.82
1931 3350 2.418884 GCTCTTTCAGGCTGGGTACTAC 60.419 54.545 15.73 0.00 0.00 2.73
1982 3403 8.418597 ACAAACTTCTAGTGGTACTTATCAGA 57.581 34.615 0.00 0.00 0.00 3.27
1994 3415 7.596995 GTGGTACTTATCAGACTATGAATCTGC 59.403 40.741 0.00 0.00 42.84 4.26
2077 3498 1.862201 TGTGTTAAAACAGAGCGTCGG 59.138 47.619 0.00 0.00 40.05 4.79
2123 3551 3.458487 ACCAACTACTTTCTGTCCTTGGT 59.542 43.478 0.00 0.00 40.73 3.67
2129 3557 3.403038 ACTTTCTGTCCTTGGTGATTCG 58.597 45.455 0.00 0.00 0.00 3.34
2134 3562 1.165270 GTCCTTGGTGATTCGTTGGG 58.835 55.000 0.00 0.00 0.00 4.12
2135 3563 0.768622 TCCTTGGTGATTCGTTGGGT 59.231 50.000 0.00 0.00 0.00 4.51
2136 3564 1.165270 CCTTGGTGATTCGTTGGGTC 58.835 55.000 0.00 0.00 0.00 4.46
2137 3565 1.165270 CTTGGTGATTCGTTGGGTCC 58.835 55.000 0.00 0.00 0.00 4.46
2138 3566 0.250989 TTGGTGATTCGTTGGGTCCC 60.251 55.000 0.00 0.00 0.00 4.46
2139 3567 1.378119 GGTGATTCGTTGGGTCCCC 60.378 63.158 5.13 0.00 0.00 4.81
2140 3568 1.377229 GTGATTCGTTGGGTCCCCA 59.623 57.895 5.13 0.00 45.63 4.96
2153 3581 2.160646 TCCCCAAAGGAACTGTCCC 58.839 57.895 0.00 0.00 46.30 4.46
2154 3582 0.402861 TCCCCAAAGGAACTGTCCCT 60.403 55.000 0.00 0.00 46.30 4.20
2155 3583 0.482887 CCCCAAAGGAACTGTCCCTT 59.517 55.000 0.00 0.00 46.30 3.95
2156 3584 1.708551 CCCCAAAGGAACTGTCCCTTA 59.291 52.381 0.00 0.00 46.30 2.69
2157 3585 2.311841 CCCCAAAGGAACTGTCCCTTAT 59.688 50.000 0.00 0.00 46.30 1.73
2158 3586 3.356290 CCCAAAGGAACTGTCCCTTATG 58.644 50.000 0.00 0.36 46.30 1.90
2159 3587 2.755103 CCAAAGGAACTGTCCCTTATGC 59.245 50.000 0.00 0.00 46.30 3.14
2160 3588 3.420893 CAAAGGAACTGTCCCTTATGCA 58.579 45.455 0.00 0.00 46.30 3.96
2161 3589 2.789409 AGGAACTGTCCCTTATGCAC 57.211 50.000 0.00 0.00 46.30 4.57
2162 3590 2.269940 AGGAACTGTCCCTTATGCACT 58.730 47.619 0.00 0.00 46.30 4.40
2163 3591 3.450904 AGGAACTGTCCCTTATGCACTA 58.549 45.455 0.00 0.00 46.30 2.74
2164 3592 3.452627 AGGAACTGTCCCTTATGCACTAG 59.547 47.826 0.00 0.00 46.30 2.57
2165 3593 3.451178 GGAACTGTCCCTTATGCACTAGA 59.549 47.826 0.00 0.00 38.08 2.43
2166 3594 4.101741 GGAACTGTCCCTTATGCACTAGAT 59.898 45.833 0.00 0.00 38.08 1.98
2167 3595 4.946478 ACTGTCCCTTATGCACTAGATC 57.054 45.455 0.00 0.00 0.00 2.75
2168 3596 4.290093 ACTGTCCCTTATGCACTAGATCA 58.710 43.478 0.00 0.00 0.00 2.92
2169 3597 4.100189 ACTGTCCCTTATGCACTAGATCAC 59.900 45.833 0.00 0.00 0.00 3.06
2170 3598 4.030216 TGTCCCTTATGCACTAGATCACA 58.970 43.478 0.00 0.00 0.00 3.58
2171 3599 4.141937 TGTCCCTTATGCACTAGATCACAC 60.142 45.833 0.00 0.00 0.00 3.82
2172 3600 4.100189 GTCCCTTATGCACTAGATCACACT 59.900 45.833 0.00 0.00 0.00 3.55
2173 3601 4.100035 TCCCTTATGCACTAGATCACACTG 59.900 45.833 0.00 0.00 0.00 3.66
2174 3602 4.100035 CCCTTATGCACTAGATCACACTGA 59.900 45.833 0.00 0.00 0.00 3.41
2175 3603 5.046529 CCTTATGCACTAGATCACACTGAC 58.953 45.833 0.00 0.00 0.00 3.51
2176 3604 5.394553 CCTTATGCACTAGATCACACTGACA 60.395 44.000 0.00 0.00 0.00 3.58
2225 3653 2.307934 CCTCTTAGGCTGCTGACTTC 57.692 55.000 3.50 0.00 31.35 3.01
2226 3654 1.552337 CCTCTTAGGCTGCTGACTTCA 59.448 52.381 3.50 0.00 31.35 3.02
2227 3655 2.027745 CCTCTTAGGCTGCTGACTTCAA 60.028 50.000 3.50 0.00 31.35 2.69
2228 3656 3.370315 CCTCTTAGGCTGCTGACTTCAAT 60.370 47.826 3.50 0.00 31.35 2.57
2229 3657 4.141846 CCTCTTAGGCTGCTGACTTCAATA 60.142 45.833 3.50 0.00 31.35 1.90
2230 3658 4.759782 TCTTAGGCTGCTGACTTCAATAC 58.240 43.478 3.50 0.00 31.35 1.89
2231 3659 4.467795 TCTTAGGCTGCTGACTTCAATACT 59.532 41.667 3.50 0.00 31.35 2.12
2232 3660 5.656859 TCTTAGGCTGCTGACTTCAATACTA 59.343 40.000 3.50 0.00 31.35 1.82
2233 3661 4.130286 AGGCTGCTGACTTCAATACTAC 57.870 45.455 0.00 0.00 0.00 2.73
2234 3662 3.772025 AGGCTGCTGACTTCAATACTACT 59.228 43.478 0.00 0.00 0.00 2.57
2235 3663 4.223923 AGGCTGCTGACTTCAATACTACTT 59.776 41.667 0.00 0.00 0.00 2.24
2236 3664 4.938226 GGCTGCTGACTTCAATACTACTTT 59.062 41.667 0.00 0.00 0.00 2.66
2237 3665 5.064071 GGCTGCTGACTTCAATACTACTTTC 59.936 44.000 0.00 0.00 0.00 2.62
2238 3666 5.872070 GCTGCTGACTTCAATACTACTTTCT 59.128 40.000 0.00 0.00 0.00 2.52
2239 3667 6.183360 GCTGCTGACTTCAATACTACTTTCTG 60.183 42.308 0.00 0.00 0.00 3.02
2240 3668 6.759272 TGCTGACTTCAATACTACTTTCTGT 58.241 36.000 0.00 0.00 0.00 3.41
2241 3669 6.868864 TGCTGACTTCAATACTACTTTCTGTC 59.131 38.462 0.00 0.00 0.00 3.51
2242 3670 6.311690 GCTGACTTCAATACTACTTTCTGTCC 59.688 42.308 0.00 0.00 0.00 4.02
2243 3671 7.540474 TGACTTCAATACTACTTTCTGTCCT 57.460 36.000 0.00 0.00 0.00 3.85
2244 3672 7.963532 TGACTTCAATACTACTTTCTGTCCTT 58.036 34.615 0.00 0.00 0.00 3.36
2245 3673 7.872993 TGACTTCAATACTACTTTCTGTCCTTG 59.127 37.037 0.00 0.00 0.00 3.61
2246 3674 7.162082 ACTTCAATACTACTTTCTGTCCTTGG 58.838 38.462 0.00 0.00 0.00 3.61
2247 3675 6.681729 TCAATACTACTTTCTGTCCTTGGT 57.318 37.500 0.00 0.00 0.00 3.67
2248 3676 6.464222 TCAATACTACTTTCTGTCCTTGGTG 58.536 40.000 0.00 0.00 0.00 4.17
2249 3677 6.269077 TCAATACTACTTTCTGTCCTTGGTGA 59.731 38.462 0.00 0.00 0.00 4.02
2250 3678 6.875972 ATACTACTTTCTGTCCTTGGTGAT 57.124 37.500 0.00 0.00 0.00 3.06
2251 3679 5.568620 ACTACTTTCTGTCCTTGGTGATT 57.431 39.130 0.00 0.00 0.00 2.57
2252 3680 5.552178 ACTACTTTCTGTCCTTGGTGATTC 58.448 41.667 0.00 0.00 0.00 2.52
2253 3681 3.403038 ACTTTCTGTCCTTGGTGATTCG 58.597 45.455 0.00 0.00 0.00 3.34
2254 3682 3.181454 ACTTTCTGTCCTTGGTGATTCGT 60.181 43.478 0.00 0.00 0.00 3.85
2255 3683 3.485463 TTCTGTCCTTGGTGATTCGTT 57.515 42.857 0.00 0.00 0.00 3.85
2256 3684 2.766313 TCTGTCCTTGGTGATTCGTTG 58.234 47.619 0.00 0.00 0.00 4.10
2257 3685 1.806542 CTGTCCTTGGTGATTCGTTGG 59.193 52.381 0.00 0.00 0.00 3.77
2258 3686 1.165270 GTCCTTGGTGATTCGTTGGG 58.835 55.000 0.00 0.00 0.00 4.12
2293 3721 7.012421 GGAACTGTCCCTTTTAATATGCACTAG 59.988 40.741 0.00 0.00 38.08 2.57
2294 3722 7.195374 ACTGTCCCTTTTAATATGCACTAGA 57.805 36.000 0.00 0.00 0.00 2.43
2295 3723 7.806180 ACTGTCCCTTTTAATATGCACTAGAT 58.194 34.615 0.00 0.00 0.00 1.98
2296 3724 7.934120 ACTGTCCCTTTTAATATGCACTAGATC 59.066 37.037 0.00 0.00 0.00 2.75
2297 3725 7.801104 TGTCCCTTTTAATATGCACTAGATCA 58.199 34.615 0.00 0.00 0.00 2.92
2298 3726 7.715249 TGTCCCTTTTAATATGCACTAGATCAC 59.285 37.037 0.00 0.00 0.00 3.06
2299 3727 7.715249 GTCCCTTTTAATATGCACTAGATCACA 59.285 37.037 0.00 0.00 0.00 3.58
2300 3728 7.715249 TCCCTTTTAATATGCACTAGATCACAC 59.285 37.037 0.00 0.00 0.00 3.82
2301 3729 7.716998 CCCTTTTAATATGCACTAGATCACACT 59.283 37.037 0.00 0.00 0.00 3.55
2425 3853 1.065551 GCTCGCAAAGAAGGTTGTTGT 59.934 47.619 0.00 0.00 0.00 3.32
2475 3910 2.441462 CGTGATATATACTGGAGCGCG 58.559 52.381 0.00 0.00 0.00 6.86
2530 3965 2.266055 GTCGGTTGCCAGGAGGAG 59.734 66.667 0.00 0.00 36.89 3.69
2676 4117 9.642343 AACTACAAAAAGATTTCTAGTTTCCCT 57.358 29.630 0.00 0.00 37.09 4.20
2680 4121 9.067986 ACAAAAAGATTTCTAGTTTCCCTAGTG 57.932 33.333 0.00 0.00 43.23 2.74
2685 4126 8.485578 AGATTTCTAGTTTCCCTAGTGGATAG 57.514 38.462 1.32 1.92 44.66 2.08
2701 4142 4.846779 GGATAGACTCCAGACTCACATC 57.153 50.000 0.00 0.00 44.26 3.06
2702 4143 4.469657 GGATAGACTCCAGACTCACATCT 58.530 47.826 0.00 0.00 44.26 2.90
2703 4144 4.892934 GGATAGACTCCAGACTCACATCTT 59.107 45.833 0.00 0.00 44.26 2.40
2704 4145 5.362430 GGATAGACTCCAGACTCACATCTTT 59.638 44.000 0.00 0.00 44.26 2.52
2705 4146 6.547880 GGATAGACTCCAGACTCACATCTTTA 59.452 42.308 0.00 0.00 44.26 1.85
2706 4147 7.232534 GGATAGACTCCAGACTCACATCTTTAT 59.767 40.741 0.00 0.00 44.26 1.40
2707 4148 6.219417 AGACTCCAGACTCACATCTTTATG 57.781 41.667 0.00 0.00 39.17 1.90
2774 4215 2.753247 AGTGGTCCTATTCTCTGTCCC 58.247 52.381 0.00 0.00 0.00 4.46
2775 4216 2.316372 AGTGGTCCTATTCTCTGTCCCT 59.684 50.000 0.00 0.00 0.00 4.20
2819 4260 7.041644 TCGTTTCTAAACAAGAACGATTCCATT 60.042 33.333 6.13 0.00 44.02 3.16
2902 4343 5.457473 GGTTGTGTCGAGGTAATTGTTTTTG 59.543 40.000 0.00 0.00 0.00 2.44
2992 4434 2.875933 TCGACAGTTTAGCACCAAAAGG 59.124 45.455 0.00 0.00 0.00 3.11
3058 4501 3.320256 TCAATATGTGGTTGTTGCTTGCA 59.680 39.130 0.00 0.00 0.00 4.08
3108 4551 7.268199 TCATAGATGGCTGCTATTCTTTTTG 57.732 36.000 0.00 0.72 0.00 2.44
3109 4552 6.830324 TCATAGATGGCTGCTATTCTTTTTGT 59.170 34.615 0.00 0.00 0.00 2.83
3111 4554 6.350629 AGATGGCTGCTATTCTTTTTGTTT 57.649 33.333 0.00 0.00 0.00 2.83
3356 4816 5.757320 CCTCCATGTCATGTCTGAAAGTATC 59.243 44.000 11.84 0.00 31.85 2.24
3396 4863 1.029681 ACCGCTGTCCTTTTGGTTTC 58.970 50.000 0.00 0.00 41.38 2.78
3426 4893 2.702592 TACGTCATGAATTGGGGGAC 57.297 50.000 0.00 0.00 0.00 4.46
3509 4976 4.261118 CGGTTTTGTGACACGTTTTAGTTG 59.739 41.667 0.22 0.00 0.00 3.16
3677 5150 2.948979 CAACTGGTTCAGGTAGCAAACA 59.051 45.455 10.96 0.00 35.51 2.83
3775 5255 6.852420 TTGCTTTGTAGTCCAGTCTACTAT 57.148 37.500 4.20 0.00 40.39 2.12
3785 5265 9.451002 GTAGTCCAGTCTACTATATTCTGCATA 57.549 37.037 0.00 0.00 37.77 3.14
3788 5268 7.122055 GTCCAGTCTACTATATTCTGCATAGCT 59.878 40.741 0.00 0.00 30.45 3.32
3872 5361 1.200020 AGAACGCAATAGGCAAGCAAC 59.800 47.619 0.00 0.00 45.17 4.17
3927 5417 4.873259 TCTGTGATTTGTTCGTGTCAGAAA 59.127 37.500 0.00 0.00 0.00 2.52
4057 5550 4.431661 AATAGCAAAGAAAGCAGCTGTC 57.568 40.909 16.64 4.11 37.94 3.51
4155 5648 3.446873 ACTTTATTTTCGGCATGCCATGA 59.553 39.130 34.93 22.58 35.37 3.07
4244 5737 5.689835 AGAGGGGAAAGAGAAGATAATTGC 58.310 41.667 0.00 0.00 0.00 3.56
4266 5759 5.532032 TGCTGTTCTTGTTGATGAAGAATCA 59.468 36.000 0.00 0.00 43.79 2.57
4321 5814 3.887621 AGATTTTCCGAGACGATGGAA 57.112 42.857 0.00 0.00 42.35 3.53
4419 5912 1.298014 GCTGTGCCTTCTGGTAGCT 59.702 57.895 0.00 0.00 35.55 3.32
4441 5934 3.634397 TTTCAGCAGCTAAGCTATGGT 57.366 42.857 0.00 0.00 44.54 3.55
4452 5945 7.173218 GCAGCTAAGCTATGGTTTTATCATACA 59.827 37.037 0.00 0.00 36.40 2.29
4477 5970 9.986833 CATTTGATTGTTTCTCGTCAATATACA 57.013 29.630 0.00 0.00 34.92 2.29
4520 6013 4.744631 GTGTAAGGCAAACATTTTCACAGG 59.255 41.667 0.00 0.00 0.00 4.00
4552 6045 9.947669 GTACAACACGATTTCAGATAGTAGTAT 57.052 33.333 0.00 0.00 0.00 2.12
4553 6046 8.858003 ACAACACGATTTCAGATAGTAGTATG 57.142 34.615 0.00 0.00 0.00 2.39
4554 6047 7.921214 ACAACACGATTTCAGATAGTAGTATGG 59.079 37.037 0.00 0.00 0.00 2.74
4577 6070 2.163211 TGAGTCTCACATTCTGCTCTCG 59.837 50.000 0.00 0.00 0.00 4.04
4579 6072 2.163412 AGTCTCACATTCTGCTCTCGTC 59.837 50.000 0.00 0.00 0.00 4.20
4580 6073 2.163412 GTCTCACATTCTGCTCTCGTCT 59.837 50.000 0.00 0.00 0.00 4.18
4602 6096 1.745232 AGTTCGTGTTGCAGTTCCAA 58.255 45.000 0.00 0.00 0.00 3.53
4605 6099 1.010125 CGTGTTGCAGTTCCAACCG 60.010 57.895 2.97 3.04 43.36 4.44
4687 6211 7.778382 TCCATGACAAATCATCAAGATCTCATT 59.222 33.333 0.00 0.00 44.13 2.57
4701 6225 9.014297 TCAAGATCTCATTGTTATCGCTCTATA 57.986 33.333 0.00 0.00 0.00 1.31
4733 6258 5.056480 TCAATCACAGTTACACAAGGTCTG 58.944 41.667 0.00 0.00 0.00 3.51
4754 6279 1.878522 CCGGAGATGCGGTCGAAAG 60.879 63.158 4.42 0.00 0.00 2.62
4755 6280 2.517450 CGGAGATGCGGTCGAAAGC 61.517 63.158 6.44 6.44 0.00 3.51
4756 6281 1.153549 GGAGATGCGGTCGAAAGCT 60.154 57.895 13.44 0.00 0.00 3.74
4757 6282 0.102481 GGAGATGCGGTCGAAAGCTA 59.898 55.000 13.44 2.49 0.00 3.32
4758 6283 1.470979 GGAGATGCGGTCGAAAGCTAA 60.471 52.381 13.44 0.00 0.00 3.09
4767 6292 3.972502 CGGTCGAAAGCTAAAAACCTTTG 59.027 43.478 0.00 0.00 31.85 2.77
4780 6305 4.373156 AAACCTTTGTAGCCATCAGAGT 57.627 40.909 0.00 0.00 0.00 3.24
4817 6342 5.898174 TGCTCCTAGAATCGATACGAAAAA 58.102 37.500 0.00 0.00 39.99 1.94
4818 6343 6.513180 TGCTCCTAGAATCGATACGAAAAAT 58.487 36.000 0.00 0.00 39.99 1.82
4819 6344 6.420903 TGCTCCTAGAATCGATACGAAAAATG 59.579 38.462 0.00 0.00 39.99 2.32
4820 6345 6.616682 GCTCCTAGAATCGATACGAAAAATGC 60.617 42.308 0.00 0.00 39.99 3.56
4821 6346 6.277605 TCCTAGAATCGATACGAAAAATGCA 58.722 36.000 0.00 0.00 39.99 3.96
4823 6348 5.409643 AGAATCGATACGAAAAATGCAGG 57.590 39.130 0.00 0.00 39.99 4.85
4825 6350 1.668751 TCGATACGAAAAATGCAGGCC 59.331 47.619 0.00 0.00 31.06 5.19
4829 6354 1.446618 CGAAAAATGCAGGCCAGCC 60.447 57.895 18.54 0.00 0.00 4.85
4917 6443 5.484715 CCATCTCCTTTTGTTTCGGTACTA 58.515 41.667 0.00 0.00 0.00 1.82
5094 6620 3.045142 GCTTTTGCTGCAGCCTCA 58.955 55.556 34.64 16.86 43.35 3.86
5173 6699 0.898320 CCTCGCCTTCTCTTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
5286 6812 1.962807 AGAAGCTCCCTCATCTCATCG 59.037 52.381 0.00 0.00 0.00 3.84
5322 6848 7.337942 ACATTCTCATCCAAAAGGATACACTTC 59.662 37.037 0.00 0.00 41.41 3.01
5328 6854 4.222145 TCCAAAAGGATACACTTCGCTACT 59.778 41.667 0.00 0.00 41.41 2.57
5349 6875 2.410469 GCTGCATCATCCAACCGC 59.590 61.111 0.00 0.00 0.00 5.68
5398 6924 1.702886 CAGTGTCTCGTAGGTTGCAG 58.297 55.000 0.00 0.00 0.00 4.41
5442 6968 3.885901 CCCTCATCTGATCGAAGTACTCA 59.114 47.826 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.914644 CCTCCTTCCAGAATGCCTCA 59.085 55.000 0.00 0.00 31.97 3.86
49 50 4.275936 CCACGTTCAGATCTTTCCTGTTTT 59.724 41.667 0.00 0.00 33.57 2.43
104 105 0.251653 AGAACCACCCGTAGAGCTCA 60.252 55.000 17.77 0.00 0.00 4.26
137 138 4.966787 GTGAAACCCCGGCCAGCA 62.967 66.667 2.24 0.00 0.00 4.41
158 159 2.214181 CTCAGACGCTGTAGCCCGTT 62.214 60.000 6.72 0.00 37.87 4.44
191 192 0.924363 CGATCGCGTGAAGGTACTCG 60.924 60.000 5.77 2.53 38.49 4.18
387 389 3.201487 TCATCTGTCCAGGCTTCAATCAT 59.799 43.478 0.00 0.00 0.00 2.45
451 453 2.426842 AGAGCCTAATTTGCCCTGAC 57.573 50.000 0.00 0.00 0.00 3.51
468 470 8.640063 TTCATTTCATCATTTCTTCTGGAAGA 57.360 30.769 8.74 8.74 44.94 2.87
469 471 9.871238 AATTCATTTCATCATTTCTTCTGGAAG 57.129 29.630 4.13 4.13 39.71 3.46
471 473 9.647797 CAAATTCATTTCATCATTTCTTCTGGA 57.352 29.630 0.00 0.00 0.00 3.86
472 474 9.647797 TCAAATTCATTTCATCATTTCTTCTGG 57.352 29.630 0.00 0.00 0.00 3.86
577 596 2.088950 ATGCAAGCAAGGCAAACATC 57.911 45.000 0.00 0.00 45.60 3.06
595 614 6.041296 GGAGATCATTGCCTTGATTTTGGTAT 59.959 38.462 0.00 0.00 36.48 2.73
607 626 2.245546 TGAAATGGGGAGATCATTGCCT 59.754 45.455 0.00 0.00 35.31 4.75
613 632 3.559069 GAGCAATGAAATGGGGAGATCA 58.441 45.455 0.00 0.00 0.00 2.92
614 633 2.889678 GGAGCAATGAAATGGGGAGATC 59.110 50.000 0.00 0.00 0.00 2.75
615 634 2.245546 TGGAGCAATGAAATGGGGAGAT 59.754 45.455 0.00 0.00 0.00 2.75
616 635 1.640149 TGGAGCAATGAAATGGGGAGA 59.360 47.619 0.00 0.00 0.00 3.71
661 700 2.627945 ACTCAGCGTGACAAAAGAACA 58.372 42.857 0.00 0.00 0.00 3.18
662 701 3.675467 AACTCAGCGTGACAAAAGAAC 57.325 42.857 0.00 0.00 0.00 3.01
664 703 3.006940 ACAAACTCAGCGTGACAAAAGA 58.993 40.909 0.00 0.00 0.00 2.52
665 704 3.405170 ACAAACTCAGCGTGACAAAAG 57.595 42.857 0.00 0.00 0.00 2.27
669 708 4.377021 AGATTTACAAACTCAGCGTGACA 58.623 39.130 0.00 0.00 0.00 3.58
670 709 4.992381 AGATTTACAAACTCAGCGTGAC 57.008 40.909 0.00 0.00 0.00 3.67
671 710 7.386573 TGATTAAGATTTACAAACTCAGCGTGA 59.613 33.333 0.00 0.00 0.00 4.35
697 736 3.443329 TGACATGGTTATGCAATCGCTTT 59.557 39.130 0.00 0.00 37.85 3.51
711 750 2.354704 CGGTATGAACTGGTGACATGGT 60.355 50.000 0.00 0.00 41.51 3.55
732 2013 1.878953 ACAACTGTCGACCAATCACC 58.121 50.000 14.12 0.00 0.00 4.02
738 2019 0.598158 GGCGTTACAACTGTCGACCA 60.598 55.000 14.12 0.01 0.00 4.02
740 2021 1.611592 CCGGCGTTACAACTGTCGAC 61.612 60.000 9.11 9.11 34.34 4.20
742 2023 1.662446 ACCGGCGTTACAACTGTCG 60.662 57.895 6.01 4.69 33.03 4.35
803 2119 2.433994 GGGAGAGCAGCAGGGAGAG 61.434 68.421 0.00 0.00 0.00 3.20
805 2121 3.847602 CGGGAGAGCAGCAGGGAG 61.848 72.222 0.00 0.00 0.00 4.30
878 2223 1.154469 GGCTTTACTCGTGCGCAAC 60.154 57.895 14.00 5.69 0.00 4.17
888 2233 0.541998 GGTGGCTTTGGGGCTTTACT 60.542 55.000 0.00 0.00 41.48 2.24
890 2235 1.605165 CGGTGGCTTTGGGGCTTTA 60.605 57.895 0.00 0.00 41.48 1.85
917 2272 0.044244 TTTAGTGGGGGAGGGAGAGG 59.956 60.000 0.00 0.00 0.00 3.69
918 2273 1.966845 TTTTAGTGGGGGAGGGAGAG 58.033 55.000 0.00 0.00 0.00 3.20
921 2276 1.078115 GGTTTTTAGTGGGGGAGGGA 58.922 55.000 0.00 0.00 0.00 4.20
934 2289 0.395312 TCGGCTCTTCCTCGGTTTTT 59.605 50.000 0.00 0.00 0.00 1.94
953 2308 0.882474 GTCGATCGGCTACCTATGCT 59.118 55.000 13.54 0.00 0.00 3.79
1080 2458 3.461773 GAGTAGCAGGAGGGCGCA 61.462 66.667 10.83 0.00 39.27 6.09
1226 2607 2.323968 TCTGCAGTAAACTGTGCACA 57.676 45.000 20.37 20.37 44.70 4.57
1240 2621 2.424601 GCACAATCCTGCTAATTCTGCA 59.575 45.455 6.01 6.01 38.81 4.41
1243 2624 5.365021 ACTAGCACAATCCTGCTAATTCT 57.635 39.130 2.72 0.00 46.69 2.40
1261 2642 4.500477 GCAGAAAACTGTGCACAAAACTAG 59.500 41.667 21.98 10.48 39.62 2.57
1263 2644 3.056607 AGCAGAAAACTGTGCACAAAACT 60.057 39.130 21.98 12.50 42.47 2.66
1264 2645 3.253230 AGCAGAAAACTGTGCACAAAAC 58.747 40.909 21.98 10.50 42.47 2.43
1265 2646 3.591196 AGCAGAAAACTGTGCACAAAA 57.409 38.095 21.98 0.00 42.47 2.44
1268 2649 3.192541 TCTAGCAGAAAACTGTGCACA 57.807 42.857 20.37 20.37 42.47 4.57
1269 2650 3.312421 TGTTCTAGCAGAAAACTGTGCAC 59.688 43.478 10.75 10.75 42.47 4.57
1270 2651 3.540617 TGTTCTAGCAGAAAACTGTGCA 58.459 40.909 0.00 0.00 42.47 4.57
1287 2672 5.518487 GCACTACTAGAATTCTGCTCTGTTC 59.482 44.000 18.47 2.06 0.00 3.18
1337 2722 3.982241 GCACCTGCACAGCCAACC 61.982 66.667 0.00 0.00 41.59 3.77
1410 2795 2.037772 CGGATGGGAGGAATCTAACCTG 59.962 54.545 0.00 0.00 37.93 4.00
1435 2820 2.223711 ACGAACCACCAACAAATTCAGC 60.224 45.455 0.00 0.00 0.00 4.26
1477 2865 5.529060 ACAAATGAAACTCTCAGTCAGAACC 59.471 40.000 0.00 0.00 37.52 3.62
1497 2885 2.028130 GATGACCACCACAACCACAAA 58.972 47.619 0.00 0.00 0.00 2.83
1514 2902 3.274288 GAGCTAGGGTTGAAGGTTGATG 58.726 50.000 0.00 0.00 0.00 3.07
1524 2912 2.668085 GCTTGCGATGAGCTAGGGTTG 61.668 57.143 0.00 0.00 46.39 3.77
1525 2913 0.462759 GCTTGCGATGAGCTAGGGTT 60.463 55.000 0.00 0.00 46.39 4.11
1526 2914 1.144936 GCTTGCGATGAGCTAGGGT 59.855 57.895 0.00 0.00 46.39 4.34
1527 2915 1.596477 GGCTTGCGATGAGCTAGGG 60.596 63.158 0.00 0.00 46.39 3.53
1615 3011 6.143919 GGTAAAACACATGCACTTTCTAAAGC 59.856 38.462 2.37 0.00 39.63 3.51
1618 3014 6.320164 AGTGGTAAAACACATGCACTTTCTAA 59.680 34.615 0.28 0.00 43.72 2.10
1619 3015 5.825679 AGTGGTAAAACACATGCACTTTCTA 59.174 36.000 0.28 0.00 43.72 2.10
1620 3016 4.644685 AGTGGTAAAACACATGCACTTTCT 59.355 37.500 0.28 0.00 43.72 2.52
1622 3018 5.108517 CAAGTGGTAAAACACATGCACTTT 58.891 37.500 7.95 1.31 43.72 2.66
1624 3020 3.068024 CCAAGTGGTAAAACACATGCACT 59.932 43.478 0.28 0.00 43.72 4.40
1626 3022 3.291584 TCCAAGTGGTAAAACACATGCA 58.708 40.909 0.28 0.00 43.72 3.96
1628 3024 5.452078 ACATCCAAGTGGTAAAACACATG 57.548 39.130 0.28 0.00 43.72 3.21
1632 3028 4.537751 TGGAACATCCAAGTGGTAAAACA 58.462 39.130 0.00 0.00 45.00 2.83
1646 3042 5.107375 GCAAACAACATGACATTGGAACATC 60.107 40.000 0.00 0.00 39.30 3.06
1653 3049 3.805422 AGCAAGCAAACAACATGACATTG 59.195 39.130 0.00 0.00 0.00 2.82
1659 3055 4.983538 TCACATTAGCAAGCAAACAACATG 59.016 37.500 0.00 0.00 0.00 3.21
1666 3062 3.938289 TGCATCACATTAGCAAGCAAA 57.062 38.095 0.00 0.00 34.97 3.68
1686 3082 4.785376 AGGAGTGTCTTACCTGATCCAATT 59.215 41.667 0.00 0.00 32.39 2.32
1701 3097 0.317854 GCGTTTTTGCCAGGAGTGTC 60.318 55.000 0.00 0.00 0.00 3.67
1707 3103 2.429069 GCGAGCGTTTTTGCCAGG 60.429 61.111 0.00 0.00 34.65 4.45
1710 3106 2.499732 CGAGCGAGCGTTTTTGCC 60.500 61.111 0.00 0.00 34.65 4.52
1735 3131 1.065491 AGCAATCACGAAGGGCACATA 60.065 47.619 0.00 0.00 0.00 2.29
1783 3181 2.879907 GCATGCGACACAAGCCAT 59.120 55.556 0.00 0.00 37.00 4.40
1795 3193 0.964358 AGAGCTTTCTGGTGGCATGC 60.964 55.000 9.90 9.90 0.00 4.06
1804 3202 3.909776 TGCATCAAACAGAGCTTTCTG 57.090 42.857 1.57 1.57 43.03 3.02
1815 3213 3.940209 TGAAGGACCAATGCATCAAAC 57.060 42.857 0.00 0.00 0.00 2.93
1821 3219 1.927487 AAGCATGAAGGACCAATGCA 58.073 45.000 21.81 0.00 40.41 3.96
1831 3250 2.938451 TCTTGCCACGATAAGCATGAAG 59.062 45.455 0.00 0.00 39.40 3.02
1837 3256 3.623060 TGATTCTTCTTGCCACGATAAGC 59.377 43.478 0.00 0.00 0.00 3.09
1839 3258 4.081142 TCCTGATTCTTCTTGCCACGATAA 60.081 41.667 0.00 0.00 0.00 1.75
1841 3260 2.237143 TCCTGATTCTTCTTGCCACGAT 59.763 45.455 0.00 0.00 0.00 3.73
1844 3263 2.163211 GCTTCCTGATTCTTCTTGCCAC 59.837 50.000 0.00 0.00 0.00 5.01
1874 3293 5.048852 AGCATCAGAAAGAAGAAAGAAGCAC 60.049 40.000 0.00 0.00 0.00 4.40
1930 3349 1.285280 TGATTCCACATCTTCCCCGT 58.715 50.000 0.00 0.00 0.00 5.28
1931 3350 2.418368 TTGATTCCACATCTTCCCCG 57.582 50.000 0.00 0.00 0.00 5.73
1982 3403 5.674052 AACAGTCAGAGCAGATTCATAGT 57.326 39.130 0.00 0.00 0.00 2.12
1994 3415 2.797156 CGGAGTGAACAAACAGTCAGAG 59.203 50.000 0.00 0.00 40.68 3.35
2077 3498 7.956943 GGTTATAACAAAATTGCTGAAATGCAC 59.043 33.333 17.16 0.00 43.20 4.57
2094 3522 7.970102 AGGACAGAAAGTAGTTGGTTATAACA 58.030 34.615 17.16 1.24 33.02 2.41
2098 3526 6.183361 ACCAAGGACAGAAAGTAGTTGGTTAT 60.183 38.462 7.54 0.00 46.62 1.89
2134 3562 0.251209 GGGACAGTTCCTTTGGGGAC 60.251 60.000 0.00 0.00 45.03 4.46
2135 3563 0.402861 AGGGACAGTTCCTTTGGGGA 60.403 55.000 0.00 0.00 42.38 4.81
2136 3564 0.482887 AAGGGACAGTTCCTTTGGGG 59.517 55.000 7.42 0.00 39.71 4.96
2137 3565 3.356290 CATAAGGGACAGTTCCTTTGGG 58.644 50.000 19.10 5.08 41.27 4.12
2138 3566 2.755103 GCATAAGGGACAGTTCCTTTGG 59.245 50.000 19.10 11.97 41.27 3.28
2139 3567 3.191371 GTGCATAAGGGACAGTTCCTTTG 59.809 47.826 19.10 16.10 41.27 2.77
2140 3568 3.074538 AGTGCATAAGGGACAGTTCCTTT 59.925 43.478 19.10 5.34 43.51 3.11
2141 3569 2.644798 AGTGCATAAGGGACAGTTCCTT 59.355 45.455 17.96 17.96 45.63 3.36
2142 3570 2.269940 AGTGCATAAGGGACAGTTCCT 58.730 47.619 0.00 0.00 42.38 3.36
2143 3571 2.789409 AGTGCATAAGGGACAGTTCC 57.211 50.000 0.00 0.00 40.89 3.62
2144 3572 4.737855 TCTAGTGCATAAGGGACAGTTC 57.262 45.455 0.00 0.00 40.89 3.01
2145 3573 4.716784 TGATCTAGTGCATAAGGGACAGTT 59.283 41.667 0.00 0.00 40.89 3.16
2146 3574 4.100189 GTGATCTAGTGCATAAGGGACAGT 59.900 45.833 0.00 0.00 40.89 3.55
2147 3575 4.100035 TGTGATCTAGTGCATAAGGGACAG 59.900 45.833 0.00 0.00 40.89 3.51
2148 3576 4.030216 TGTGATCTAGTGCATAAGGGACA 58.970 43.478 0.00 0.00 40.89 4.02
2149 3577 4.100189 AGTGTGATCTAGTGCATAAGGGAC 59.900 45.833 0.00 0.00 38.27 4.46
2150 3578 4.100035 CAGTGTGATCTAGTGCATAAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
2151 3579 4.100035 TCAGTGTGATCTAGTGCATAAGGG 59.900 45.833 0.00 0.00 0.00 3.95
2152 3580 5.046529 GTCAGTGTGATCTAGTGCATAAGG 58.953 45.833 0.00 0.00 0.00 2.69
2153 3581 5.654497 TGTCAGTGTGATCTAGTGCATAAG 58.346 41.667 0.00 0.00 0.00 1.73
2154 3582 5.659440 TGTCAGTGTGATCTAGTGCATAA 57.341 39.130 0.00 0.00 0.00 1.90
2155 3583 5.185828 AGTTGTCAGTGTGATCTAGTGCATA 59.814 40.000 0.00 0.00 0.00 3.14
2156 3584 4.020751 AGTTGTCAGTGTGATCTAGTGCAT 60.021 41.667 0.00 0.00 0.00 3.96
2157 3585 3.321968 AGTTGTCAGTGTGATCTAGTGCA 59.678 43.478 0.00 0.00 0.00 4.57
2158 3586 3.919216 AGTTGTCAGTGTGATCTAGTGC 58.081 45.455 0.00 0.00 0.00 4.40
2159 3587 6.447162 TGTTAGTTGTCAGTGTGATCTAGTG 58.553 40.000 0.00 0.00 0.00 2.74
2160 3588 6.650427 TGTTAGTTGTCAGTGTGATCTAGT 57.350 37.500 0.00 0.00 0.00 2.57
2161 3589 7.093354 ACATGTTAGTTGTCAGTGTGATCTAG 58.907 38.462 0.00 0.00 0.00 2.43
2162 3590 6.993079 ACATGTTAGTTGTCAGTGTGATCTA 58.007 36.000 0.00 0.00 0.00 1.98
2163 3591 5.858381 ACATGTTAGTTGTCAGTGTGATCT 58.142 37.500 0.00 0.00 0.00 2.75
2164 3592 6.365839 CAACATGTTAGTTGTCAGTGTGATC 58.634 40.000 11.53 0.00 42.93 2.92
2165 3593 5.239306 CCAACATGTTAGTTGTCAGTGTGAT 59.761 40.000 11.53 0.00 45.66 3.06
2166 3594 4.574421 CCAACATGTTAGTTGTCAGTGTGA 59.426 41.667 11.53 0.00 45.66 3.58
2167 3595 4.574421 TCCAACATGTTAGTTGTCAGTGTG 59.426 41.667 11.53 0.00 45.66 3.82
2168 3596 4.776349 TCCAACATGTTAGTTGTCAGTGT 58.224 39.130 11.53 0.00 45.66 3.55
2169 3597 5.947228 ATCCAACATGTTAGTTGTCAGTG 57.053 39.130 11.53 0.00 45.66 3.66
2170 3598 6.205464 CAGAATCCAACATGTTAGTTGTCAGT 59.795 38.462 11.53 0.00 45.66 3.41
2171 3599 6.427853 TCAGAATCCAACATGTTAGTTGTCAG 59.572 38.462 11.53 3.16 45.66 3.51
2172 3600 6.295249 TCAGAATCCAACATGTTAGTTGTCA 58.705 36.000 11.53 0.00 45.66 3.58
2173 3601 6.801539 TCAGAATCCAACATGTTAGTTGTC 57.198 37.500 11.53 5.66 45.66 3.18
2174 3602 6.716628 ACATCAGAATCCAACATGTTAGTTGT 59.283 34.615 11.53 2.48 45.66 3.32
2175 3603 7.025365 CACATCAGAATCCAACATGTTAGTTG 58.975 38.462 11.53 0.00 46.44 3.16
2176 3604 6.716628 ACACATCAGAATCCAACATGTTAGTT 59.283 34.615 11.53 6.39 0.00 2.24
2217 3645 6.311690 GGACAGAAAGTAGTATTGAAGTCAGC 59.688 42.308 0.00 0.00 0.00 4.26
2218 3646 7.607250 AGGACAGAAAGTAGTATTGAAGTCAG 58.393 38.462 0.00 0.00 0.00 3.51
2219 3647 7.540474 AGGACAGAAAGTAGTATTGAAGTCA 57.460 36.000 0.00 0.00 0.00 3.41
2220 3648 7.332182 CCAAGGACAGAAAGTAGTATTGAAGTC 59.668 40.741 0.00 0.00 0.00 3.01
2221 3649 7.162082 CCAAGGACAGAAAGTAGTATTGAAGT 58.838 38.462 0.00 0.00 0.00 3.01
2222 3650 7.118390 CACCAAGGACAGAAAGTAGTATTGAAG 59.882 40.741 0.00 0.00 0.00 3.02
2223 3651 6.934645 CACCAAGGACAGAAAGTAGTATTGAA 59.065 38.462 0.00 0.00 0.00 2.69
2224 3652 6.269077 TCACCAAGGACAGAAAGTAGTATTGA 59.731 38.462 0.00 0.00 0.00 2.57
2225 3653 6.464222 TCACCAAGGACAGAAAGTAGTATTG 58.536 40.000 0.00 0.00 0.00 1.90
2226 3654 6.681729 TCACCAAGGACAGAAAGTAGTATT 57.318 37.500 0.00 0.00 0.00 1.89
2227 3655 6.875972 ATCACCAAGGACAGAAAGTAGTAT 57.124 37.500 0.00 0.00 0.00 2.12
2228 3656 6.571731 CGAATCACCAAGGACAGAAAGTAGTA 60.572 42.308 0.00 0.00 0.00 1.82
2229 3657 5.552178 GAATCACCAAGGACAGAAAGTAGT 58.448 41.667 0.00 0.00 0.00 2.73
2230 3658 4.627467 CGAATCACCAAGGACAGAAAGTAG 59.373 45.833 0.00 0.00 0.00 2.57
2231 3659 4.039973 ACGAATCACCAAGGACAGAAAGTA 59.960 41.667 0.00 0.00 0.00 2.24
2232 3660 3.181454 ACGAATCACCAAGGACAGAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
2233 3661 3.403038 ACGAATCACCAAGGACAGAAAG 58.597 45.455 0.00 0.00 0.00 2.62
2234 3662 3.485463 ACGAATCACCAAGGACAGAAA 57.515 42.857 0.00 0.00 0.00 2.52
2235 3663 3.138304 CAACGAATCACCAAGGACAGAA 58.862 45.455 0.00 0.00 0.00 3.02
2236 3664 2.549992 CCAACGAATCACCAAGGACAGA 60.550 50.000 0.00 0.00 0.00 3.41
2237 3665 1.806542 CCAACGAATCACCAAGGACAG 59.193 52.381 0.00 0.00 0.00 3.51
2238 3666 1.544537 CCCAACGAATCACCAAGGACA 60.545 52.381 0.00 0.00 0.00 4.02
2239 3667 1.165270 CCCAACGAATCACCAAGGAC 58.835 55.000 0.00 0.00 0.00 3.85
2240 3668 0.768622 ACCCAACGAATCACCAAGGA 59.231 50.000 0.00 0.00 0.00 3.36
2241 3669 1.165270 GACCCAACGAATCACCAAGG 58.835 55.000 0.00 0.00 0.00 3.61
2242 3670 1.165270 GGACCCAACGAATCACCAAG 58.835 55.000 0.00 0.00 0.00 3.61
2243 3671 0.250989 GGGACCCAACGAATCACCAA 60.251 55.000 5.33 0.00 0.00 3.67
2244 3672 1.377229 GGGACCCAACGAATCACCA 59.623 57.895 5.33 0.00 0.00 4.17
2245 3673 4.313819 GGGACCCAACGAATCACC 57.686 61.111 5.33 0.00 0.00 4.02
2255 3683 2.925684 ACAGTTCCTGTGGGGACCCA 62.926 60.000 14.01 5.84 43.63 4.51
2256 3684 2.125766 GACAGTTCCTGTGGGGACCC 62.126 65.000 0.03 0.03 45.44 4.46
2257 3685 1.375326 GACAGTTCCTGTGGGGACC 59.625 63.158 0.86 0.00 45.44 4.46
2258 3686 1.375326 GGACAGTTCCTGTGGGGAC 59.625 63.158 0.86 0.00 45.44 4.46
2265 3693 5.652014 TGCATATTAAAAGGGACAGTTCCTG 59.348 40.000 0.00 0.00 42.38 3.86
2273 3701 7.715249 TGTGATCTAGTGCATATTAAAAGGGAC 59.285 37.037 0.00 0.00 0.00 4.46
2293 3721 6.365839 CAACATGTTAGTTGTCAGTGTGATC 58.634 40.000 11.53 0.00 42.93 2.92
2294 3722 5.239306 CCAACATGTTAGTTGTCAGTGTGAT 59.761 40.000 11.53 0.00 45.66 3.06
2295 3723 4.574421 CCAACATGTTAGTTGTCAGTGTGA 59.426 41.667 11.53 0.00 45.66 3.58
2296 3724 4.574421 TCCAACATGTTAGTTGTCAGTGTG 59.426 41.667 11.53 0.00 45.66 3.82
2297 3725 4.776349 TCCAACATGTTAGTTGTCAGTGT 58.224 39.130 11.53 0.00 45.66 3.55
2298 3726 5.947228 ATCCAACATGTTAGTTGTCAGTG 57.053 39.130 11.53 0.00 45.66 3.66
2299 3727 6.205464 CAGAATCCAACATGTTAGTTGTCAGT 59.795 38.462 11.53 0.00 45.66 3.41
2300 3728 6.427853 TCAGAATCCAACATGTTAGTTGTCAG 59.572 38.462 11.53 3.16 45.66 3.51
2301 3729 6.295249 TCAGAATCCAACATGTTAGTTGTCA 58.705 36.000 11.53 0.00 45.66 3.58
2319 3747 3.996921 AGAGGCAGAACACATCAGAAT 57.003 42.857 0.00 0.00 0.00 2.40
2320 3748 3.777106 AAGAGGCAGAACACATCAGAA 57.223 42.857 0.00 0.00 0.00 3.02
2321 3749 3.196469 CCTAAGAGGCAGAACACATCAGA 59.804 47.826 0.00 0.00 0.00 3.27
2322 3750 3.529533 CCTAAGAGGCAGAACACATCAG 58.470 50.000 0.00 0.00 0.00 2.90
2323 3751 3.616956 CCTAAGAGGCAGAACACATCA 57.383 47.619 0.00 0.00 0.00 3.07
2513 3948 2.266055 CTCCTCCTGGCAACCGAC 59.734 66.667 0.00 0.00 0.00 4.79
2530 3965 1.743321 CTCCAGAGACATCCCTCCGC 61.743 65.000 0.00 0.00 33.76 5.54
2685 4126 5.971763 ACATAAAGATGTGAGTCTGGAGTC 58.028 41.667 0.00 0.00 44.90 3.36
2797 4238 9.243637 CAAAAATGGAATCGTTCTTGTTTAGAA 57.756 29.630 0.00 0.00 40.57 2.10
2819 4260 6.038161 CACACTGATCACCTAAGAACACAAAA 59.962 38.462 0.00 0.00 0.00 2.44
2902 4343 9.833917 AGGTATTAGTAGCCTGTAAAAATTCTC 57.166 33.333 0.00 0.00 0.00 2.87
2919 4361 6.766467 GCACTAGGCAACATAAAGGTATTAGT 59.234 38.462 0.00 0.00 43.97 2.24
2924 4366 5.395990 GTAGGCACTAGGCAACATAAAGGTA 60.396 44.000 0.00 0.00 44.14 3.08
2934 4376 2.544844 AGGTAGTAGGCACTAGGCAA 57.455 50.000 0.00 0.00 44.14 4.52
2992 4434 6.318648 TCATAGCACCATTCAATAGTTTGGAC 59.681 38.462 0.00 0.00 33.44 4.02
3045 4488 1.337703 TCACTCATGCAAGCAACAACC 59.662 47.619 0.00 0.00 0.00 3.77
3058 4501 5.227569 TCAGTTAACCACATGTCACTCAT 57.772 39.130 0.88 0.00 37.22 2.90
3108 4551 1.266989 GTACTGCCAACTGCCTGAAAC 59.733 52.381 0.00 0.00 40.16 2.78
3109 4552 1.604604 GTACTGCCAACTGCCTGAAA 58.395 50.000 0.00 0.00 40.16 2.69
3111 4554 1.005037 CGTACTGCCAACTGCCTGA 60.005 57.895 0.00 0.00 40.16 3.86
3356 4816 3.069289 TGAAGTCTTGCATAGCACACAG 58.931 45.455 0.00 0.00 38.71 3.66
3396 4863 2.612604 TCATGACGTATTGGTGTTCCG 58.387 47.619 0.00 0.00 36.30 4.30
3426 4893 4.330894 TCAAGAGCATTCGTCAAAGCATAG 59.669 41.667 0.00 0.00 0.00 2.23
3509 4976 9.593134 TTTTGTATCAATGTGGGCATTAATAAC 57.407 29.630 0.00 0.00 42.91 1.89
3752 5227 6.852420 ATAGTAGACTGGACTACAAAGCAA 57.148 37.500 11.35 0.00 43.38 3.91
3785 5265 3.119029 AGTTGTTGACAAAATGCACAGCT 60.119 39.130 0.00 0.00 37.63 4.24
3788 5268 4.814147 TCAAGTTGTTGACAAAATGCACA 58.186 34.783 2.11 0.00 37.79 4.57
3872 5361 7.420002 TCATTCATCTTGAACAACTTCTTGTG 58.580 34.615 0.00 0.00 39.88 3.33
3993 5486 8.394877 CAGTAATATGCAATTTTACCTTGTCGA 58.605 33.333 11.14 0.00 40.27 4.20
3994 5487 8.394877 TCAGTAATATGCAATTTTACCTTGTCG 58.605 33.333 11.14 0.00 40.27 4.35
4057 5550 2.045926 CTCGCCCCAGTTTCCCTG 60.046 66.667 0.00 0.00 41.15 4.45
4155 5648 1.203025 AGTCTCGGTTACCCACAGTCT 60.203 52.381 0.00 0.00 0.00 3.24
4179 5672 3.860754 GCAAGTGTAAGGGCCAAATTGAC 60.861 47.826 6.18 0.00 0.00 3.18
4244 5737 7.199541 ACTGATTCTTCATCAACAAGAACAG 57.800 36.000 15.53 15.53 41.66 3.16
4266 5759 2.362120 CGGGTCGGTGTCCCTACT 60.362 66.667 0.00 0.00 42.56 2.57
4321 5814 9.676861 GTTTTGGTAAACATATAGTTCTAGGGT 57.323 33.333 0.00 0.00 42.56 4.34
4419 5912 4.335416 ACCATAGCTTAGCTGCTGAAAAA 58.665 39.130 17.97 0.00 43.87 1.94
4452 5945 9.988350 GTGTATATTGACGAGAAACAATCAAAT 57.012 29.630 0.00 0.00 37.75 2.32
4477 5970 6.174720 ACACAGGATCAATATAATCCACGT 57.825 37.500 15.82 10.88 44.39 4.49
4494 5987 7.443289 CTGTGAAAATGTTTGCCTTACACAGG 61.443 42.308 0.53 0.00 44.61 4.00
4520 6013 6.706055 TCTGAAATCGTGTTGTACTTCATC 57.294 37.500 0.00 0.00 0.00 2.92
4531 6024 6.265649 AGCCATACTACTATCTGAAATCGTGT 59.734 38.462 0.00 0.00 0.00 4.49
4532 6025 6.584184 CAGCCATACTACTATCTGAAATCGTG 59.416 42.308 0.00 0.00 0.00 4.35
4552 6045 1.338484 GCAGAATGTGAGACTCAGCCA 60.338 52.381 5.10 1.47 39.31 4.75
4553 6046 1.066286 AGCAGAATGTGAGACTCAGCC 60.066 52.381 5.10 0.00 39.31 4.85
4554 6047 2.094078 AGAGCAGAATGTGAGACTCAGC 60.094 50.000 5.10 4.68 39.31 4.26
4577 6070 2.470821 ACTGCAACACGAACTACAGAC 58.529 47.619 0.00 0.00 0.00 3.51
4579 6072 2.221055 GGAACTGCAACACGAACTACAG 59.779 50.000 0.00 0.00 0.00 2.74
4580 6073 2.206750 GGAACTGCAACACGAACTACA 58.793 47.619 0.00 0.00 0.00 2.74
4602 6096 4.716794 TGTAAACCAGTTGTATTTCCGGT 58.283 39.130 0.00 0.00 0.00 5.28
4605 6099 9.705290 ATGAAATTGTAAACCAGTTGTATTTCC 57.295 29.630 0.00 0.00 32.53 3.13
4671 6195 7.160049 AGCGATAACAATGAGATCTTGATGAT 58.840 34.615 0.00 0.00 38.27 2.45
4701 6225 5.295292 GTGTAACTGTGATTGATGCATAGCT 59.705 40.000 0.00 0.00 0.00 3.32
4744 6269 1.534163 AGGTTTTTAGCTTTCGACCGC 59.466 47.619 0.00 0.00 32.55 5.68
4754 6279 5.183140 TCTGATGGCTACAAAGGTTTTTAGC 59.817 40.000 10.79 10.79 42.66 3.09
4755 6280 6.431234 ACTCTGATGGCTACAAAGGTTTTTAG 59.569 38.462 0.00 0.00 0.00 1.85
4756 6281 6.303839 ACTCTGATGGCTACAAAGGTTTTTA 58.696 36.000 0.00 0.00 0.00 1.52
4757 6282 5.140454 ACTCTGATGGCTACAAAGGTTTTT 58.860 37.500 0.00 0.00 0.00 1.94
4758 6283 4.729868 ACTCTGATGGCTACAAAGGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
4767 6292 5.521906 TCTGTATGAACTCTGATGGCTAC 57.478 43.478 0.00 0.00 0.00 3.58
4780 6305 6.983906 TCTAGGAGCATCAATCTGTATGAA 57.016 37.500 0.00 0.00 36.25 2.57
4823 6348 1.135286 GCACTAAAATCACAGGCTGGC 60.135 52.381 20.34 4.34 0.00 4.85
4825 6350 3.076621 TGAGCACTAAAATCACAGGCTG 58.923 45.455 14.16 14.16 0.00 4.85
4853 6379 0.990374 ATGAGCCTTCTTGTCCTGCT 59.010 50.000 0.00 0.00 34.40 4.24
4917 6443 3.941483 CGCCTCAAGACACTCCAATAATT 59.059 43.478 0.00 0.00 0.00 1.40
5082 6608 1.378119 CAAGGATGAGGCTGCAGCA 60.378 57.895 37.63 20.18 44.36 4.41
5173 6699 2.357517 CGAAGCAGTTCTGCGGGT 60.358 61.111 17.28 8.40 40.23 5.28
5265 6791 2.364970 CGATGAGATGAGGGAGCTTCTT 59.635 50.000 0.00 0.00 0.00 2.52
5286 6812 3.507233 TGGATGAGAATGTGGTTTTCAGC 59.493 43.478 0.00 0.00 36.81 4.26
5322 6848 1.003116 GATGATGCAGCCAAAGTAGCG 60.003 52.381 0.00 0.00 34.64 4.26
5398 6924 2.893489 AGAAGGAAATTCACCCAAGCAC 59.107 45.455 0.00 0.00 40.67 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.