Multiple sequence alignment - TraesCS1A01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G352600 chr1A 100.000 3284 0 0 1 3284 536658351 536661634 0.000000e+00 6065.0
1 TraesCS1A01G352600 chr1D 93.291 3294 159 24 1 3284 441305338 441302097 0.000000e+00 4802.0
2 TraesCS1A01G352600 chr1D 94.937 79 2 1 133 211 441305560 441305484 4.450000e-24 122.0
3 TraesCS1A01G352600 chr1B 92.495 2385 125 22 186 2555 599342454 599340109 0.000000e+00 3363.0
4 TraesCS1A01G352600 chr1B 93.306 732 42 3 2554 3284 599340081 599339356 0.000000e+00 1074.0
5 TraesCS1A01G352600 chr1B 88.953 172 13 3 1 166 599342750 599342579 1.190000e-49 207.0
6 TraesCS1A01G352600 chr5A 93.827 243 14 1 907 1149 592634407 592634166 6.700000e-97 364.0
7 TraesCS1A01G352600 chr5A 88.112 143 12 2 1 139 647359693 647359552 7.290000e-37 165.0
8 TraesCS1A01G352600 chrUn 88.889 135 15 0 1 135 2124379 2124513 2.030000e-37 167.0
9 TraesCS1A01G352600 chr7B 88.571 140 12 3 1 137 81695955 81696093 2.030000e-37 167.0
10 TraesCS1A01G352600 chr3D 87.857 140 15 2 1 138 596158640 596158501 2.620000e-36 163.0
11 TraesCS1A01G352600 chr7D 88.148 135 16 0 1 135 40690674 40690808 9.430000e-36 161.0
12 TraesCS1A01G352600 chr2D 88.321 137 11 2 3 135 54485918 54486053 3.390000e-35 159.0
13 TraesCS1A01G352600 chr2B 87.770 139 13 3 1 135 96231063 96231201 3.390000e-35 159.0
14 TraesCS1A01G352600 chr2B 86.957 92 12 0 3193 3284 494255666 494255757 1.610000e-18 104.0
15 TraesCS1A01G352600 chr4B 88.172 93 11 0 3192 3284 404487363 404487455 9.630000e-21 111.0
16 TraesCS1A01G352600 chr2A 88.172 93 11 0 3192 3284 568278692 568278784 9.630000e-21 111.0
17 TraesCS1A01G352600 chr2A 87.097 93 12 0 3192 3284 546791501 546791409 4.480000e-19 106.0
18 TraesCS1A01G352600 chr2A 87.640 89 11 0 3196 3284 567731698 567731786 1.610000e-18 104.0
19 TraesCS1A01G352600 chr2A 86.022 93 13 0 3192 3284 547001866 547001774 2.090000e-17 100.0
20 TraesCS1A01G352600 chr2A 94.737 57 2 1 1048 1104 35422849 35422794 1.620000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G352600 chr1A 536658351 536661634 3283 False 6065 6065 100.000000 1 3284 1 chr1A.!!$F1 3283
1 TraesCS1A01G352600 chr1D 441302097 441305560 3463 True 2462 4802 94.114000 1 3284 2 chr1D.!!$R1 3283
2 TraesCS1A01G352600 chr1B 599339356 599342750 3394 True 1548 3363 91.584667 1 3284 3 chr1B.!!$R1 3283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 262 1.002430 TGATATGCCGGCTCAATCTCC 59.998 52.381 29.70 8.95 0.0 3.71 F
1264 1613 0.028505 CGATGCGCTTGGGAAGAATG 59.971 55.000 9.73 0.00 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1845 0.179078 GAGCACCTCTGCCTCATCTG 60.179 60.0 0.00 0.00 45.53 2.90 R
2404 2754 0.102481 GGAGATGCGGTCGAAAGCTA 59.898 55.0 13.44 2.49 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 257 2.104622 TCAAGATGATATGCCGGCTCAA 59.895 45.455 29.70 13.42 0.00 3.02
39 262 1.002430 TGATATGCCGGCTCAATCTCC 59.998 52.381 29.70 8.95 0.00 3.71
61 284 2.555448 CGGAGGTGCTCATAGGGATAGA 60.555 54.545 0.00 0.00 31.08 1.98
79 306 3.319137 AGAGTGTGTGTGCGTTCATAT 57.681 42.857 0.00 0.00 0.00 1.78
81 308 2.736721 GAGTGTGTGTGCGTTCATATGT 59.263 45.455 1.90 0.00 0.00 2.29
82 309 3.138304 AGTGTGTGTGCGTTCATATGTT 58.862 40.909 1.90 0.00 0.00 2.71
92 319 4.084066 TGCGTTCATATGTTTGAGTGTGTC 60.084 41.667 1.90 0.00 0.00 3.67
129 358 2.155155 GCTTGCGTCTGTACTGTGTTAC 59.845 50.000 0.00 0.00 0.00 2.50
134 363 4.630505 TGCGTCTGTACTGTGTTACAAAAA 59.369 37.500 0.00 0.00 0.00 1.94
145 374 7.197703 ACTGTGTTACAAAAATAGGTTTTCCG 58.802 34.615 0.00 0.00 46.35 4.30
231 567 1.371022 CCGATCGAGCCTCACATCG 60.371 63.158 18.66 13.57 40.26 3.84
232 568 1.356979 CGATCGAGCCTCACATCGT 59.643 57.895 10.26 0.00 39.86 3.73
315 651 1.376543 GCCCTAAACTAAACCCTCGC 58.623 55.000 0.00 0.00 0.00 5.03
920 1269 2.430921 GTCGTCAGGTGCCTCGTG 60.431 66.667 0.00 0.00 0.00 4.35
1034 1383 0.251297 TCATGGCTGGGTTTGTGGAG 60.251 55.000 0.00 0.00 0.00 3.86
1075 1424 0.536006 GTGGAGCTGCACCAAGAACT 60.536 55.000 26.46 0.00 39.22 3.01
1175 1524 1.358830 ATGGAGGAGAAGGCCATGGG 61.359 60.000 15.13 0.00 40.72 4.00
1181 1530 2.757099 GAAGGCCATGGGGTGCTG 60.757 66.667 15.13 0.00 36.17 4.41
1189 1538 1.980772 ATGGGGTGCTGCAAAGAGC 60.981 57.895 2.77 0.00 45.96 4.09
1191 1540 2.633509 GGGGTGCTGCAAAGAGCTG 61.634 63.158 2.77 0.00 45.94 4.24
1235 1584 3.319135 TCGGGACCGAGAGCTATAC 57.681 57.895 9.76 0.00 44.01 1.47
1237 1586 1.158434 CGGGACCGAGAGCTATACTC 58.842 60.000 4.40 0.00 46.66 2.59
1263 1612 0.107703 TCGATGCGCTTGGGAAGAAT 60.108 50.000 9.73 0.00 0.00 2.40
1264 1613 0.028505 CGATGCGCTTGGGAAGAATG 59.971 55.000 9.73 0.00 0.00 2.67
1344 1693 6.115446 TCCATTGAGGATTACAGTTGATGTC 58.885 40.000 0.00 0.00 43.07 3.06
1383 1732 1.821332 GGATGCCTACTGTGCTGCC 60.821 63.158 0.00 0.00 0.00 4.85
1439 1788 2.551071 GGATGGCAGAGTATAAGGTGGC 60.551 54.545 0.00 0.00 36.08 5.01
1496 1845 3.279875 CGGGCTTAATCGGCTGGC 61.280 66.667 0.00 0.00 32.62 4.85
1497 1846 2.124320 GGGCTTAATCGGCTGGCA 60.124 61.111 1.08 0.00 0.00 4.92
1548 1897 1.855213 GCGAGCATGGTCTTGTTGCA 61.855 55.000 21.73 0.00 38.84 4.08
1624 1973 3.003378 CGACGATGGTATCAGCTACTTCA 59.997 47.826 0.00 0.00 0.00 3.02
1763 2112 2.893489 AGAAGGAAATTCACCCAAGCAC 59.107 45.455 0.00 0.00 40.67 4.40
1839 2188 1.003116 GATGATGCAGCCAAAGTAGCG 60.003 52.381 0.00 0.00 34.64 4.26
1875 2224 3.507233 TGGATGAGAATGTGGTTTTCAGC 59.493 43.478 0.00 0.00 36.81 4.26
1896 2245 2.364970 CGATGAGATGAGGGAGCTTCTT 59.635 50.000 0.00 0.00 0.00 2.52
1988 2337 2.357517 CGAAGCAGTTCTGCGGGT 60.358 61.111 17.28 8.40 40.23 5.28
2079 2428 1.378119 CAAGGATGAGGCTGCAGCA 60.378 57.895 37.63 20.18 44.36 4.41
2244 2593 3.941483 CGCCTCAAGACACTCCAATAATT 59.059 43.478 0.00 0.00 0.00 1.40
2308 2657 0.990374 ATGAGCCTTCTTGTCCTGCT 59.010 50.000 0.00 0.00 34.40 4.24
2312 2661 2.625314 GAGCCTTCTTGTCCTGCTTTTT 59.375 45.455 0.00 0.00 31.23 1.94
2333 2683 5.947228 TTTCTGAGCACTAAAATCACAGG 57.053 39.130 0.00 0.00 0.00 4.00
2334 2684 3.338249 TCTGAGCACTAAAATCACAGGC 58.662 45.455 0.00 0.00 0.00 4.85
2335 2685 3.008375 TCTGAGCACTAAAATCACAGGCT 59.992 43.478 0.00 0.00 0.00 4.58
2336 2686 3.076621 TGAGCACTAAAATCACAGGCTG 58.923 45.455 14.16 14.16 0.00 4.85
2337 2687 2.421424 GAGCACTAAAATCACAGGCTGG 59.579 50.000 20.34 8.05 0.00 4.85
2338 2688 1.135286 GCACTAAAATCACAGGCTGGC 60.135 52.381 20.34 4.34 0.00 4.85
2339 2689 1.474077 CACTAAAATCACAGGCTGGCC 59.526 52.381 20.34 3.00 0.00 5.36
2381 2731 6.983906 TCTAGGAGCATCAATCTGTATGAA 57.016 37.500 0.00 0.00 36.25 2.57
2394 2744 5.521906 TCTGTATGAACTCTGATGGCTAC 57.478 43.478 0.00 0.00 0.00 3.58
2403 2753 4.729868 ACTCTGATGGCTACAAAGGTTTT 58.270 39.130 0.00 0.00 0.00 2.43
2404 2754 5.140454 ACTCTGATGGCTACAAAGGTTTTT 58.860 37.500 0.00 0.00 0.00 1.94
2406 2756 6.431234 ACTCTGATGGCTACAAAGGTTTTTAG 59.569 38.462 0.00 0.00 0.00 1.85
2407 2757 5.183140 TCTGATGGCTACAAAGGTTTTTAGC 59.817 40.000 10.79 10.79 42.66 3.09
2417 2767 1.534163 AGGTTTTTAGCTTTCGACCGC 59.466 47.619 0.00 0.00 32.55 5.68
2460 2810 5.295292 GTGTAACTGTGATTGATGCATAGCT 59.705 40.000 0.00 0.00 0.00 3.32
2490 2841 7.160049 AGCGATAACAATGAGATCTTGATGAT 58.840 34.615 0.00 0.00 38.27 2.45
2556 2937 9.705290 ATGAAATTGTAAACCAGTTGTATTTCC 57.295 29.630 0.00 0.00 32.53 3.13
2559 2940 4.716794 TGTAAACCAGTTGTATTTCCGGT 58.283 39.130 0.00 0.00 0.00 5.28
2581 2963 2.206750 GGAACTGCAACACGAACTACA 58.793 47.619 0.00 0.00 0.00 2.74
2582 2964 2.221055 GGAACTGCAACACGAACTACAG 59.779 50.000 0.00 0.00 0.00 2.74
2584 2966 2.470821 ACTGCAACACGAACTACAGAC 58.529 47.619 0.00 0.00 0.00 3.51
2607 2989 2.094078 AGAGCAGAATGTGAGACTCAGC 60.094 50.000 5.10 4.68 39.31 4.26
2608 2990 1.066286 AGCAGAATGTGAGACTCAGCC 60.066 52.381 5.10 0.00 39.31 4.85
2609 2991 1.338484 GCAGAATGTGAGACTCAGCCA 60.338 52.381 5.10 1.47 39.31 4.75
2629 3011 6.584184 CAGCCATACTACTATCTGAAATCGTG 59.416 42.308 0.00 0.00 0.00 4.35
2630 3012 6.265649 AGCCATACTACTATCTGAAATCGTGT 59.734 38.462 0.00 0.00 0.00 4.49
2641 3023 6.706055 TCTGAAATCGTGTTGTACTTCATC 57.294 37.500 0.00 0.00 0.00 2.92
2667 3049 7.443289 CTGTGAAAATGTTTGCCTTACACAGG 61.443 42.308 0.53 0.00 44.61 4.00
2684 3066 6.174720 ACACAGGATCAATATAATCCACGT 57.825 37.500 15.82 10.88 44.39 4.49
2709 3091 9.988350 GTGTATATTGACGAGAAACAATCAAAT 57.012 29.630 0.00 0.00 37.75 2.32
2742 3124 4.335416 ACCATAGCTTAGCTGCTGAAAAA 58.665 39.130 17.97 0.00 43.87 1.94
2840 3222 9.676861 GTTTTGGTAAACATATAGTTCTAGGGT 57.323 33.333 0.00 0.00 42.56 4.34
2895 3277 2.362120 CGGGTCGGTGTCCCTACT 60.362 66.667 0.00 0.00 42.56 2.57
2917 3299 7.199541 ACTGATTCTTCATCAACAAGAACAG 57.800 36.000 15.53 15.53 41.66 3.16
2982 3364 3.860754 GCAAGTGTAAGGGCCAAATTGAC 60.861 47.826 6.18 0.00 0.00 3.18
3006 3388 1.203025 AGTCTCGGTTACCCACAGTCT 60.203 52.381 0.00 0.00 0.00 3.24
3104 3486 2.045926 CTCGCCCCAGTTTCCCTG 60.046 66.667 0.00 0.00 41.15 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 257 0.188587 TATGAGCACCTCCGGGAGAT 59.811 55.000 25.60 5.01 36.25 2.75
39 262 0.833834 ATCCCTATGAGCACCTCCGG 60.834 60.000 0.00 0.00 0.00 5.14
61 284 2.766313 ACATATGAACGCACACACACT 58.234 42.857 10.38 0.00 0.00 3.55
79 306 0.102663 TACGCGGACACACTCAAACA 59.897 50.000 12.47 0.00 0.00 2.83
81 308 1.269883 ACATACGCGGACACACTCAAA 60.270 47.619 12.47 0.00 0.00 2.69
82 309 0.315886 ACATACGCGGACACACTCAA 59.684 50.000 12.47 0.00 0.00 3.02
180 409 7.092623 ACTGTACTTGGTCCATGATATAACCAA 60.093 37.037 11.60 5.76 46.65 3.67
297 633 1.558294 AGGCGAGGGTTTAGTTTAGGG 59.442 52.381 0.00 0.00 0.00 3.53
1075 1424 2.554636 CGCCAAGCTTGTCCTGCAA 61.555 57.895 24.35 0.00 35.50 4.08
1189 1538 2.656651 CGATTCCGGAGCGAGCAG 60.657 66.667 20.21 0.00 0.00 4.24
1235 1584 3.260483 GCGCATCGAGCACCTGAG 61.260 66.667 0.30 0.00 46.13 3.35
1237 1586 2.816958 AAGCGCATCGAGCACCTG 60.817 61.111 11.47 0.00 46.13 4.00
1263 1612 3.582647 TGAGTGCATCCTCTAACCTTTCA 59.417 43.478 5.97 0.00 32.50 2.69
1264 1613 4.207891 TGAGTGCATCCTCTAACCTTTC 57.792 45.455 5.97 0.00 32.50 2.62
1324 1673 6.358974 TCTGACATCAACTGTAATCCTCAA 57.641 37.500 0.00 0.00 38.54 3.02
1335 1684 3.072944 GCTGAAGCTTCTGACATCAACT 58.927 45.455 30.77 0.00 38.21 3.16
1344 1693 0.725686 CCATCACGCTGAAGCTTCTG 59.274 55.000 26.09 25.27 39.32 3.02
1383 1732 0.391130 TCGCATCCTCAAACCTTCCG 60.391 55.000 0.00 0.00 0.00 4.30
1424 1773 1.202533 CCGGTGCCACCTTATACTCTG 60.203 57.143 12.94 0.00 35.66 3.35
1439 1788 1.202521 TGTATGCTGCTACATCCGGTG 60.203 52.381 0.00 1.37 0.00 4.94
1496 1845 0.179078 GAGCACCTCTGCCTCATCTG 60.179 60.000 0.00 0.00 45.53 2.90
1497 1846 1.336632 GGAGCACCTCTGCCTCATCT 61.337 60.000 0.00 0.00 45.53 2.90
1548 1897 2.093606 CAGCACACATGTCTCCTCATCT 60.094 50.000 0.00 0.00 0.00 2.90
1624 1973 0.694771 TCCAGCTCAGCCATTCTGTT 59.305 50.000 0.00 0.00 43.32 3.16
1719 2068 3.885901 CCCTCATCTGATCGAAGTACTCA 59.114 47.826 0.00 0.00 0.00 3.41
1763 2112 1.702886 CAGTGTCTCGTAGGTTGCAG 58.297 55.000 0.00 0.00 0.00 4.41
1812 2161 2.410469 GCTGCATCATCCAACCGC 59.590 61.111 0.00 0.00 0.00 5.68
1833 2182 4.222145 TCCAAAAGGATACACTTCGCTACT 59.778 41.667 0.00 0.00 41.41 2.57
1839 2188 7.337942 ACATTCTCATCCAAAAGGATACACTTC 59.662 37.037 0.00 0.00 41.41 3.01
1875 2224 1.962807 AGAAGCTCCCTCATCTCATCG 59.037 52.381 0.00 0.00 0.00 3.84
1988 2337 0.898320 CCTCGCCTTCTCTTCTTCCA 59.102 55.000 0.00 0.00 0.00 3.53
2067 2416 3.045142 GCTTTTGCTGCAGCCTCA 58.955 55.556 34.64 16.86 43.35 3.86
2244 2593 5.484715 CCATCTCCTTTTGTTTCGGTACTA 58.515 41.667 0.00 0.00 0.00 1.82
2312 2661 3.753272 GCCTGTGATTTTAGTGCTCAGAA 59.247 43.478 0.00 0.00 0.00 3.02
2332 2682 1.446618 CGAAAAATGCAGGCCAGCC 60.447 57.895 18.54 0.00 0.00 4.85
2333 2683 0.525761 TACGAAAAATGCAGGCCAGC 59.474 50.000 14.22 14.22 0.00 4.85
2334 2684 2.539547 CGATACGAAAAATGCAGGCCAG 60.540 50.000 5.01 0.00 0.00 4.85
2335 2685 1.400142 CGATACGAAAAATGCAGGCCA 59.600 47.619 5.01 0.00 0.00 5.36
2336 2686 1.668751 TCGATACGAAAAATGCAGGCC 59.331 47.619 0.00 0.00 31.06 5.19
2337 2687 3.609103 ATCGATACGAAAAATGCAGGC 57.391 42.857 0.00 0.00 39.99 4.85
2338 2688 5.409643 AGAATCGATACGAAAAATGCAGG 57.590 39.130 0.00 0.00 39.99 4.85
2339 2689 6.420903 TCCTAGAATCGATACGAAAAATGCAG 59.579 38.462 0.00 0.00 39.99 4.41
2340 2690 6.277605 TCCTAGAATCGATACGAAAAATGCA 58.722 36.000 0.00 0.00 39.99 3.96
2341 2691 6.616682 GCTCCTAGAATCGATACGAAAAATGC 60.617 42.308 0.00 0.00 39.99 3.56
2342 2692 6.420903 TGCTCCTAGAATCGATACGAAAAATG 59.579 38.462 0.00 0.00 39.99 2.32
2343 2693 6.513180 TGCTCCTAGAATCGATACGAAAAAT 58.487 36.000 0.00 0.00 39.99 1.82
2344 2694 5.898174 TGCTCCTAGAATCGATACGAAAAA 58.102 37.500 0.00 0.00 39.99 1.94
2381 2731 4.373156 AAACCTTTGTAGCCATCAGAGT 57.627 40.909 0.00 0.00 0.00 3.24
2394 2744 3.972502 CGGTCGAAAGCTAAAAACCTTTG 59.027 43.478 0.00 0.00 31.85 2.77
2403 2753 1.470979 GGAGATGCGGTCGAAAGCTAA 60.471 52.381 13.44 0.00 0.00 3.09
2404 2754 0.102481 GGAGATGCGGTCGAAAGCTA 59.898 55.000 13.44 2.49 0.00 3.32
2406 2756 2.517450 CGGAGATGCGGTCGAAAGC 61.517 63.158 6.44 6.44 0.00 3.51
2407 2757 1.878522 CCGGAGATGCGGTCGAAAG 60.879 63.158 4.42 0.00 0.00 2.62
2428 2778 5.056480 TCAATCACAGTTACACAAGGTCTG 58.944 41.667 0.00 0.00 0.00 3.51
2460 2810 9.014297 TCAAGATCTCATTGTTATCGCTCTATA 57.986 33.333 0.00 0.00 0.00 1.31
2474 2825 7.778382 TCCATGACAAATCATCAAGATCTCATT 59.222 33.333 0.00 0.00 44.13 2.57
2556 2937 1.010125 CGTGTTGCAGTTCCAACCG 60.010 57.895 2.97 3.04 43.36 4.44
2559 2940 1.745232 AGTTCGTGTTGCAGTTCCAA 58.255 45.000 0.00 0.00 0.00 3.53
2581 2963 2.163412 GTCTCACATTCTGCTCTCGTCT 59.837 50.000 0.00 0.00 0.00 4.18
2582 2964 2.163412 AGTCTCACATTCTGCTCTCGTC 59.837 50.000 0.00 0.00 0.00 4.20
2584 2966 2.163211 TGAGTCTCACATTCTGCTCTCG 59.837 50.000 0.00 0.00 0.00 4.04
2607 2989 7.921214 ACAACACGATTTCAGATAGTAGTATGG 59.079 37.037 0.00 0.00 0.00 2.74
2608 2990 8.858003 ACAACACGATTTCAGATAGTAGTATG 57.142 34.615 0.00 0.00 0.00 2.39
2609 2991 9.947669 GTACAACACGATTTCAGATAGTAGTAT 57.052 33.333 0.00 0.00 0.00 2.12
2641 3023 4.744631 GTGTAAGGCAAACATTTTCACAGG 59.255 41.667 0.00 0.00 0.00 4.00
2684 3066 9.986833 CATTTGATTGTTTCTCGTCAATATACA 57.013 29.630 0.00 0.00 34.92 2.29
2709 3091 7.173218 GCAGCTAAGCTATGGTTTTATCATACA 59.827 37.037 0.00 0.00 36.40 2.29
2720 3102 3.634397 TTTCAGCAGCTAAGCTATGGT 57.366 42.857 0.00 0.00 44.54 3.55
2742 3124 1.298014 GCTGTGCCTTCTGGTAGCT 59.702 57.895 0.00 0.00 35.55 3.32
2840 3222 3.887621 AGATTTTCCGAGACGATGGAA 57.112 42.857 0.00 0.00 42.35 3.53
2895 3277 5.532032 TGCTGTTCTTGTTGATGAAGAATCA 59.468 36.000 0.00 0.00 43.79 2.57
2917 3299 5.689835 AGAGGGGAAAGAGAAGATAATTGC 58.310 41.667 0.00 0.00 0.00 3.56
3006 3388 3.446873 ACTTTATTTTCGGCATGCCATGA 59.553 39.130 34.93 22.58 35.37 3.07
3104 3486 4.431661 AATAGCAAAGAAAGCAGCTGTC 57.568 40.909 16.64 4.11 37.94 3.51
3234 3619 4.873259 TCTGTGATTTGTTCGTGTCAGAAA 59.127 37.500 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.