Multiple sequence alignment - TraesCS1A01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G352300 chr1A 100.000 2728 0 0 1 2728 536625877 536623150 0.000000e+00 5038.0
1 TraesCS1A01G352300 chr1A 85.632 174 24 1 1 174 565140310 565140482 6.000000e-42 182.0
2 TraesCS1A01G352300 chrUn 94.148 1572 90 2 993 2562 304251385 304249814 0.000000e+00 2392.0
3 TraesCS1A01G352300 chrUn 93.884 1357 81 2 993 2347 386708637 386709993 0.000000e+00 2045.0
4 TraesCS1A01G352300 chrUn 93.810 1357 82 2 993 2347 348534346 348535702 0.000000e+00 2039.0
5 TraesCS1A01G352300 chr6A 83.476 1870 287 19 785 2641 570011352 570009492 0.000000e+00 1722.0
6 TraesCS1A01G352300 chr2A 82.444 1874 305 21 784 2641 595965294 595967159 0.000000e+00 1616.0
7 TraesCS1A01G352300 chr2A 82.906 1796 282 19 818 2599 41055668 41053884 0.000000e+00 1592.0
8 TraesCS1A01G352300 chr2A 97.701 87 2 0 2642 2728 666268116 666268202 1.690000e-32 150.0
9 TraesCS1A01G352300 chr2A 100.000 29 0 0 528 556 765711340 765711368 1.000000e-03 54.7
10 TraesCS1A01G352300 chr2B 82.158 1872 301 30 785 2641 784979393 784981246 0.000000e+00 1576.0
11 TraesCS1A01G352300 chr2B 86.207 174 24 0 1 174 51879708 51879881 3.590000e-44 189.0
12 TraesCS1A01G352300 chr3B 81.006 1869 320 30 785 2641 562277741 562279586 0.000000e+00 1452.0
13 TraesCS1A01G352300 chr3B 87.739 522 62 2 2122 2641 828532725 828532204 2.320000e-170 608.0
14 TraesCS1A01G352300 chr2D 82.686 1415 218 22 784 2178 38626591 38625184 0.000000e+00 1230.0
15 TraesCS1A01G352300 chr6B 82.537 1403 233 10 785 2179 583464821 583463423 0.000000e+00 1223.0
16 TraesCS1A01G352300 chr7A 81.357 1341 230 16 785 2113 712972441 712971109 0.000000e+00 1074.0
17 TraesCS1A01G352300 chr7A 96.875 32 0 1 530 560 200623873 200623842 5.000000e-03 52.8
18 TraesCS1A01G352300 chr3A 85.788 584 78 5 2061 2641 730875887 730875306 4.990000e-172 614.0
19 TraesCS1A01G352300 chr3A 85.714 175 23 2 1 174 744448256 744448083 1.670000e-42 183.0
20 TraesCS1A01G352300 chr7B 86.187 514 63 7 2132 2641 32554020 32554529 1.430000e-152 549.0
21 TraesCS1A01G352300 chr1D 88.024 167 19 1 9 175 454168 454003 2.140000e-46 196.0
22 TraesCS1A01G352300 chr1D 85.965 171 24 0 9 179 233326374 233326204 1.670000e-42 183.0
23 TraesCS1A01G352300 chr5A 87.425 167 19 2 9 174 608428324 608428159 9.970000e-45 191.0
24 TraesCS1A01G352300 chr5A 87.349 166 19 2 9 173 469117492 469117328 3.590000e-44 189.0
25 TraesCS1A01G352300 chr7D 87.349 166 18 3 9 172 522866327 522866163 1.290000e-43 187.0
26 TraesCS1A01G352300 chr3D 85.714 175 23 2 1 174 105464650 105464477 1.670000e-42 183.0
27 TraesCS1A01G352300 chr3D 97.143 35 0 1 528 561 47657168 47657134 1.060000e-04 58.4
28 TraesCS1A01G352300 chr4A 82.353 68 5 6 528 591 713122438 713122502 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G352300 chr1A 536623150 536625877 2727 True 5038 5038 100.000 1 2728 1 chr1A.!!$R1 2727
1 TraesCS1A01G352300 chrUn 304249814 304251385 1571 True 2392 2392 94.148 993 2562 1 chrUn.!!$R1 1569
2 TraesCS1A01G352300 chrUn 386708637 386709993 1356 False 2045 2045 93.884 993 2347 1 chrUn.!!$F2 1354
3 TraesCS1A01G352300 chrUn 348534346 348535702 1356 False 2039 2039 93.810 993 2347 1 chrUn.!!$F1 1354
4 TraesCS1A01G352300 chr6A 570009492 570011352 1860 True 1722 1722 83.476 785 2641 1 chr6A.!!$R1 1856
5 TraesCS1A01G352300 chr2A 595965294 595967159 1865 False 1616 1616 82.444 784 2641 1 chr2A.!!$F1 1857
6 TraesCS1A01G352300 chr2A 41053884 41055668 1784 True 1592 1592 82.906 818 2599 1 chr2A.!!$R1 1781
7 TraesCS1A01G352300 chr2B 784979393 784981246 1853 False 1576 1576 82.158 785 2641 1 chr2B.!!$F2 1856
8 TraesCS1A01G352300 chr3B 562277741 562279586 1845 False 1452 1452 81.006 785 2641 1 chr3B.!!$F1 1856
9 TraesCS1A01G352300 chr3B 828532204 828532725 521 True 608 608 87.739 2122 2641 1 chr3B.!!$R1 519
10 TraesCS1A01G352300 chr2D 38625184 38626591 1407 True 1230 1230 82.686 784 2178 1 chr2D.!!$R1 1394
11 TraesCS1A01G352300 chr6B 583463423 583464821 1398 True 1223 1223 82.537 785 2179 1 chr6B.!!$R1 1394
12 TraesCS1A01G352300 chr7A 712971109 712972441 1332 True 1074 1074 81.357 785 2113 1 chr7A.!!$R2 1328
13 TraesCS1A01G352300 chr3A 730875306 730875887 581 True 614 614 85.788 2061 2641 1 chr3A.!!$R1 580
14 TraesCS1A01G352300 chr7B 32554020 32554529 509 False 549 549 86.187 2132 2641 1 chr7B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 697 0.034089 AGCTCCCATTTGCCACCTAC 60.034 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 1939 0.03563 CCTCCTTTGCTCTCTGGGTG 60.036 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.915812 GGTTTAAAATTTGAACGCATGGT 57.084 34.783 7.18 0.00 0.00 3.55
23 24 6.293713 GGTTTAAAATTTGAACGCATGGTT 57.706 33.333 7.18 0.00 42.96 3.67
24 25 6.720343 GGTTTAAAATTTGAACGCATGGTTT 58.280 32.000 7.18 0.00 39.50 3.27
25 26 7.852516 GGTTTAAAATTTGAACGCATGGTTTA 58.147 30.769 7.18 0.00 39.50 2.01
26 27 8.336080 GGTTTAAAATTTGAACGCATGGTTTAA 58.664 29.630 7.18 0.00 39.50 1.52
27 28 9.364110 GTTTAAAATTTGAACGCATGGTTTAAG 57.636 29.630 0.00 0.00 39.50 1.85
28 29 8.873215 TTAAAATTTGAACGCATGGTTTAAGA 57.127 26.923 0.00 0.00 39.50 2.10
29 30 7.406799 AAAATTTGAACGCATGGTTTAAGAG 57.593 32.000 0.00 0.00 39.50 2.85
30 31 5.957842 ATTTGAACGCATGGTTTAAGAGA 57.042 34.783 0.00 0.00 39.50 3.10
31 32 5.957842 TTTGAACGCATGGTTTAAGAGAT 57.042 34.783 0.00 0.00 39.50 2.75
32 33 4.944962 TGAACGCATGGTTTAAGAGATG 57.055 40.909 0.00 0.00 39.50 2.90
33 34 4.574892 TGAACGCATGGTTTAAGAGATGA 58.425 39.130 0.00 0.00 39.50 2.92
34 35 5.000591 TGAACGCATGGTTTAAGAGATGAA 58.999 37.500 0.00 0.00 39.50 2.57
35 36 5.471797 TGAACGCATGGTTTAAGAGATGAAA 59.528 36.000 0.00 0.00 39.50 2.69
36 37 6.150976 TGAACGCATGGTTTAAGAGATGAAAT 59.849 34.615 0.00 0.00 39.50 2.17
37 38 5.883661 ACGCATGGTTTAAGAGATGAAATG 58.116 37.500 0.00 0.00 0.00 2.32
38 39 5.415701 ACGCATGGTTTAAGAGATGAAATGT 59.584 36.000 0.00 0.00 0.00 2.71
39 40 6.071952 ACGCATGGTTTAAGAGATGAAATGTT 60.072 34.615 0.00 0.00 0.00 2.71
40 41 6.808212 CGCATGGTTTAAGAGATGAAATGTTT 59.192 34.615 0.00 0.00 0.00 2.83
41 42 7.329226 CGCATGGTTTAAGAGATGAAATGTTTT 59.671 33.333 0.00 0.00 0.00 2.43
42 43 9.638239 GCATGGTTTAAGAGATGAAATGTTTTA 57.362 29.630 0.00 0.00 0.00 1.52
84 85 3.420839 AAAGAAAACTCACAGGTTGCG 57.579 42.857 0.00 0.00 0.00 4.85
85 86 2.325583 AGAAAACTCACAGGTTGCGA 57.674 45.000 0.00 0.00 0.00 5.10
86 87 1.940613 AGAAAACTCACAGGTTGCGAC 59.059 47.619 0.00 0.00 0.00 5.19
87 88 1.668751 GAAAACTCACAGGTTGCGACA 59.331 47.619 6.39 0.00 0.00 4.35
88 89 1.745232 AAACTCACAGGTTGCGACAA 58.255 45.000 6.39 0.00 0.00 3.18
89 90 1.299541 AACTCACAGGTTGCGACAAG 58.700 50.000 6.39 0.00 0.00 3.16
90 91 0.178068 ACTCACAGGTTGCGACAAGT 59.822 50.000 6.39 0.32 0.00 3.16
91 92 0.583438 CTCACAGGTTGCGACAAGTG 59.417 55.000 17.54 17.54 35.00 3.16
92 93 0.813610 TCACAGGTTGCGACAAGTGG 60.814 55.000 21.22 8.73 34.67 4.00
93 94 2.186826 ACAGGTTGCGACAAGTGGC 61.187 57.895 6.39 0.00 34.76 5.01
113 114 2.949106 GCTGCATGTGCGTCACTT 59.051 55.556 10.54 2.86 45.83 3.16
114 115 1.441515 GCTGCATGTGCGTCACTTG 60.442 57.895 16.17 16.17 45.83 3.16
115 116 1.944035 CTGCATGTGCGTCACTTGT 59.056 52.632 19.26 3.84 45.83 3.16
116 117 0.110509 CTGCATGTGCGTCACTTGTC 60.111 55.000 19.26 14.46 45.83 3.18
117 118 1.154599 GCATGTGCGTCACTTGTCG 60.155 57.895 19.26 0.00 40.25 4.35
123 124 3.630204 CGTCACTTGTCGCAGCTT 58.370 55.556 0.00 0.00 0.00 3.74
124 125 1.202568 CGTCACTTGTCGCAGCTTG 59.797 57.895 0.00 0.00 0.00 4.01
125 126 1.215014 CGTCACTTGTCGCAGCTTGA 61.215 55.000 0.00 0.00 0.00 3.02
126 127 0.937304 GTCACTTGTCGCAGCTTGAA 59.063 50.000 0.00 0.00 0.00 2.69
127 128 1.330521 GTCACTTGTCGCAGCTTGAAA 59.669 47.619 0.00 0.00 0.00 2.69
128 129 2.013400 TCACTTGTCGCAGCTTGAAAA 58.987 42.857 0.00 0.00 0.00 2.29
149 150 8.339714 TGAAAAGTTGGAGTAATCTTTGTAACG 58.660 33.333 0.00 0.00 31.75 3.18
150 151 8.441312 AAAAGTTGGAGTAATCTTTGTAACGA 57.559 30.769 0.00 0.00 31.75 3.85
151 152 7.653767 AAGTTGGAGTAATCTTTGTAACGAG 57.346 36.000 0.00 0.00 0.00 4.18
152 153 6.756221 AGTTGGAGTAATCTTTGTAACGAGT 58.244 36.000 0.00 0.00 0.00 4.18
153 154 7.889469 AGTTGGAGTAATCTTTGTAACGAGTA 58.111 34.615 0.00 0.00 0.00 2.59
154 155 7.811713 AGTTGGAGTAATCTTTGTAACGAGTAC 59.188 37.037 0.00 1.89 32.58 2.73
155 156 7.458409 TGGAGTAATCTTTGTAACGAGTACT 57.542 36.000 9.87 9.87 41.88 2.73
157 158 7.967771 GAGTAATCTTTGTAACGAGTACTCC 57.032 40.000 19.42 3.69 45.13 3.85
158 159 7.700022 AGTAATCTTTGTAACGAGTACTCCT 57.300 36.000 17.23 7.29 36.63 3.69
159 160 7.760437 AGTAATCTTTGTAACGAGTACTCCTC 58.240 38.462 17.23 5.92 36.63 3.71
160 161 6.585695 AATCTTTGTAACGAGTACTCCTCA 57.414 37.500 17.23 8.28 40.48 3.86
161 162 6.585695 ATCTTTGTAACGAGTACTCCTCAA 57.414 37.500 17.23 13.15 40.48 3.02
162 163 6.010294 TCTTTGTAACGAGTACTCCTCAAG 57.990 41.667 17.23 10.41 40.48 3.02
163 164 5.533903 TCTTTGTAACGAGTACTCCTCAAGT 59.466 40.000 17.23 5.95 40.48 3.16
164 165 4.761235 TGTAACGAGTACTCCTCAAGTG 57.239 45.455 17.23 3.86 40.48 3.16
165 166 4.392047 TGTAACGAGTACTCCTCAAGTGA 58.608 43.478 17.23 0.00 40.48 3.41
166 167 5.008331 TGTAACGAGTACTCCTCAAGTGAT 58.992 41.667 17.23 0.00 40.48 3.06
167 168 4.442375 AACGAGTACTCCTCAAGTGATG 57.558 45.455 17.23 1.71 40.48 3.07
168 169 3.687125 ACGAGTACTCCTCAAGTGATGA 58.313 45.455 17.23 0.00 40.48 2.92
169 170 4.274147 ACGAGTACTCCTCAAGTGATGAT 58.726 43.478 17.23 0.00 40.48 2.45
170 171 4.707448 ACGAGTACTCCTCAAGTGATGATT 59.293 41.667 17.23 0.00 40.48 2.57
171 172 5.186021 ACGAGTACTCCTCAAGTGATGATTT 59.814 40.000 17.23 0.00 40.48 2.17
172 173 5.746245 CGAGTACTCCTCAAGTGATGATTTC 59.254 44.000 17.23 0.00 40.48 2.17
173 174 5.655488 AGTACTCCTCAAGTGATGATTTCG 58.345 41.667 0.00 0.00 39.11 3.46
174 175 4.543590 ACTCCTCAAGTGATGATTTCGT 57.456 40.909 0.00 0.00 37.44 3.85
175 176 4.499183 ACTCCTCAAGTGATGATTTCGTC 58.501 43.478 0.00 0.00 37.44 4.20
176 177 3.861840 TCCTCAAGTGATGATTTCGTCC 58.138 45.455 0.00 0.00 37.44 4.79
177 178 3.260632 TCCTCAAGTGATGATTTCGTCCA 59.739 43.478 0.00 0.00 37.44 4.02
178 179 4.080919 TCCTCAAGTGATGATTTCGTCCAT 60.081 41.667 0.00 0.00 37.44 3.41
179 180 4.272018 CCTCAAGTGATGATTTCGTCCATC 59.728 45.833 0.00 0.00 37.44 3.51
180 181 4.831107 TCAAGTGATGATTTCGTCCATCA 58.169 39.130 0.00 0.00 44.66 3.07
185 186 4.359706 TGATGATTTCGTCCATCACTACG 58.640 43.478 0.00 0.00 42.76 3.51
186 187 3.861276 TGATTTCGTCCATCACTACGT 57.139 42.857 0.00 0.00 39.99 3.57
187 188 4.968812 TGATTTCGTCCATCACTACGTA 57.031 40.909 0.00 0.00 39.99 3.57
188 189 5.509716 TGATTTCGTCCATCACTACGTAT 57.490 39.130 0.00 0.00 39.99 3.06
189 190 5.516996 TGATTTCGTCCATCACTACGTATC 58.483 41.667 0.00 0.00 39.99 2.24
190 191 4.968812 TTTCGTCCATCACTACGTATCA 57.031 40.909 0.00 0.00 39.99 2.15
191 192 3.957671 TCGTCCATCACTACGTATCAC 57.042 47.619 0.00 0.00 39.99 3.06
192 193 3.272581 TCGTCCATCACTACGTATCACA 58.727 45.455 0.00 0.00 39.99 3.58
193 194 3.064408 TCGTCCATCACTACGTATCACAC 59.936 47.826 0.00 0.00 39.99 3.82
201 202 3.604202 CGTATCACACGCGTCGCC 61.604 66.667 9.86 0.00 45.03 5.54
202 203 3.252484 GTATCACACGCGTCGCCC 61.252 66.667 9.86 0.00 0.00 6.13
203 204 3.750155 TATCACACGCGTCGCCCA 61.750 61.111 9.86 0.00 0.00 5.36
204 205 3.975083 TATCACACGCGTCGCCCAC 62.975 63.158 9.86 0.00 0.00 4.61
217 218 4.514577 CCCACGCACCGCCTCTAG 62.515 72.222 0.00 0.00 0.00 2.43
218 219 3.760035 CCACGCACCGCCTCTAGT 61.760 66.667 0.00 0.00 0.00 2.57
219 220 2.507102 CACGCACCGCCTCTAGTG 60.507 66.667 0.00 0.00 37.05 2.74
225 226 4.537433 CCGCCTCTAGTGGGCTGC 62.537 72.222 20.75 0.00 46.73 5.25
226 227 4.537433 CGCCTCTAGTGGGCTGCC 62.537 72.222 11.05 11.05 46.73 4.85
227 228 4.182433 GCCTCTAGTGGGCTGCCC 62.182 72.222 30.97 30.97 45.57 5.36
243 244 2.818274 CCGTTAGTGGGGAAGCGC 60.818 66.667 0.00 0.00 0.00 5.92
244 245 2.818274 CGTTAGTGGGGAAGCGCC 60.818 66.667 2.29 0.00 36.97 6.53
254 255 4.785453 GAAGCGCCCCCTCACCTG 62.785 72.222 2.29 0.00 0.00 4.00
261 262 4.715130 CCCCTCACCTGACCGGGA 62.715 72.222 6.32 0.00 39.08 5.14
262 263 2.606519 CCCTCACCTGACCGGGAA 60.607 66.667 6.32 0.00 39.08 3.97
263 264 2.660064 CCCTCACCTGACCGGGAAG 61.660 68.421 6.32 1.88 39.08 3.46
264 265 2.266055 CTCACCTGACCGGGAAGC 59.734 66.667 6.32 0.00 36.97 3.86
265 266 2.203788 TCACCTGACCGGGAAGCT 60.204 61.111 6.32 0.00 36.97 3.74
266 267 1.831652 CTCACCTGACCGGGAAGCTT 61.832 60.000 6.32 0.00 36.97 3.74
267 268 1.376037 CACCTGACCGGGAAGCTTC 60.376 63.158 18.54 18.54 36.97 3.86
268 269 2.269241 CCTGACCGGGAAGCTTCC 59.731 66.667 33.67 33.67 46.82 3.46
276 277 2.269241 GGAAGCTTCCACCTCCGG 59.731 66.667 35.71 0.00 46.76 5.14
277 278 2.593956 GGAAGCTTCCACCTCCGGT 61.594 63.158 35.71 0.00 46.76 5.28
278 279 1.375326 GAAGCTTCCACCTCCGGTT 59.625 57.895 15.97 0.00 31.02 4.44
279 280 0.673956 GAAGCTTCCACCTCCGGTTC 60.674 60.000 15.97 0.00 31.02 3.62
280 281 1.128188 AAGCTTCCACCTCCGGTTCT 61.128 55.000 0.00 0.00 31.02 3.01
281 282 1.376037 GCTTCCACCTCCGGTTCTG 60.376 63.158 0.00 0.00 31.02 3.02
282 283 1.296715 CTTCCACCTCCGGTTCTGG 59.703 63.158 0.00 4.44 31.02 3.86
283 284 2.185310 CTTCCACCTCCGGTTCTGGG 62.185 65.000 0.00 0.00 31.02 4.45
284 285 2.606519 CCACCTCCGGTTCTGGGA 60.607 66.667 0.00 0.00 31.02 4.37
285 286 2.221299 CCACCTCCGGTTCTGGGAA 61.221 63.158 0.00 0.00 31.02 3.97
286 287 1.296715 CACCTCCGGTTCTGGGAAG 59.703 63.158 0.00 0.00 31.02 3.46
287 288 2.269241 CCTCCGGTTCTGGGAAGC 59.731 66.667 0.00 0.10 32.02 3.86
288 289 2.294078 CCTCCGGTTCTGGGAAGCT 61.294 63.158 0.00 0.00 32.02 3.74
289 290 1.679898 CTCCGGTTCTGGGAAGCTT 59.320 57.895 0.00 0.00 32.02 3.74
290 291 0.036875 CTCCGGTTCTGGGAAGCTTT 59.963 55.000 0.00 0.00 32.02 3.51
291 292 0.036306 TCCGGTTCTGGGAAGCTTTC 59.964 55.000 0.00 0.00 0.00 2.62
292 293 0.250727 CCGGTTCTGGGAAGCTTTCA 60.251 55.000 7.16 5.23 0.00 2.69
293 294 1.604604 CGGTTCTGGGAAGCTTTCAA 58.395 50.000 7.16 0.00 0.00 2.69
294 295 1.953686 CGGTTCTGGGAAGCTTTCAAA 59.046 47.619 7.16 0.00 0.00 2.69
295 296 2.558359 CGGTTCTGGGAAGCTTTCAAAT 59.442 45.455 7.16 0.00 0.00 2.32
296 297 3.612479 CGGTTCTGGGAAGCTTTCAAATG 60.612 47.826 7.16 0.00 0.00 2.32
297 298 3.306294 GGTTCTGGGAAGCTTTCAAATGG 60.306 47.826 7.16 0.00 0.00 3.16
298 299 3.243359 TCTGGGAAGCTTTCAAATGGT 57.757 42.857 7.16 0.00 0.00 3.55
299 300 3.575805 TCTGGGAAGCTTTCAAATGGTT 58.424 40.909 7.16 0.00 0.00 3.67
300 301 3.966665 TCTGGGAAGCTTTCAAATGGTTT 59.033 39.130 7.16 0.00 0.00 3.27
301 302 4.408596 TCTGGGAAGCTTTCAAATGGTTTT 59.591 37.500 7.16 0.00 0.00 2.43
302 303 5.104569 TCTGGGAAGCTTTCAAATGGTTTTT 60.105 36.000 7.16 0.00 0.00 1.94
327 328 9.817365 TTTTTATTTGATTTTTGTGTGTGTGTG 57.183 25.926 0.00 0.00 0.00 3.82
328 329 8.539770 TTTATTTGATTTTTGTGTGTGTGTGT 57.460 26.923 0.00 0.00 0.00 3.72
329 330 8.539770 TTATTTGATTTTTGTGTGTGTGTGTT 57.460 26.923 0.00 0.00 0.00 3.32
330 331 6.851222 TTTGATTTTTGTGTGTGTGTGTTT 57.149 29.167 0.00 0.00 0.00 2.83
331 332 6.459257 TTGATTTTTGTGTGTGTGTGTTTC 57.541 33.333 0.00 0.00 0.00 2.78
332 333 5.777802 TGATTTTTGTGTGTGTGTGTTTCT 58.222 33.333 0.00 0.00 0.00 2.52
333 334 5.861251 TGATTTTTGTGTGTGTGTGTTTCTC 59.139 36.000 0.00 0.00 0.00 2.87
334 335 4.837896 TTTTGTGTGTGTGTGTTTCTCA 57.162 36.364 0.00 0.00 0.00 3.27
335 336 5.384063 TTTTGTGTGTGTGTGTTTCTCAT 57.616 34.783 0.00 0.00 0.00 2.90
336 337 4.614555 TTGTGTGTGTGTGTTTCTCATC 57.385 40.909 0.00 0.00 0.00 2.92
337 338 3.872696 TGTGTGTGTGTGTTTCTCATCT 58.127 40.909 0.00 0.00 0.00 2.90
338 339 3.622612 TGTGTGTGTGTGTTTCTCATCTG 59.377 43.478 0.00 0.00 0.00 2.90
339 340 3.002656 GTGTGTGTGTGTTTCTCATCTGG 59.997 47.826 0.00 0.00 0.00 3.86
340 341 2.031682 GTGTGTGTGTTTCTCATCTGGC 60.032 50.000 0.00 0.00 0.00 4.85
341 342 2.158769 TGTGTGTGTTTCTCATCTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
342 343 2.880890 GTGTGTGTTTCTCATCTGGCTT 59.119 45.455 0.00 0.00 0.00 4.35
343 344 3.316308 GTGTGTGTTTCTCATCTGGCTTT 59.684 43.478 0.00 0.00 0.00 3.51
344 345 3.953612 TGTGTGTTTCTCATCTGGCTTTT 59.046 39.130 0.00 0.00 0.00 2.27
345 346 4.036734 TGTGTGTTTCTCATCTGGCTTTTC 59.963 41.667 0.00 0.00 0.00 2.29
346 347 4.276926 GTGTGTTTCTCATCTGGCTTTTCT 59.723 41.667 0.00 0.00 0.00 2.52
347 348 4.276678 TGTGTTTCTCATCTGGCTTTTCTG 59.723 41.667 0.00 0.00 0.00 3.02
348 349 3.822735 TGTTTCTCATCTGGCTTTTCTGG 59.177 43.478 0.00 0.00 0.00 3.86
349 350 3.795688 TTCTCATCTGGCTTTTCTGGT 57.204 42.857 0.00 0.00 0.00 4.00
350 351 3.795688 TCTCATCTGGCTTTTCTGGTT 57.204 42.857 0.00 0.00 0.00 3.67
351 352 4.104383 TCTCATCTGGCTTTTCTGGTTT 57.896 40.909 0.00 0.00 0.00 3.27
352 353 4.473444 TCTCATCTGGCTTTTCTGGTTTT 58.527 39.130 0.00 0.00 0.00 2.43
353 354 4.520492 TCTCATCTGGCTTTTCTGGTTTTC 59.480 41.667 0.00 0.00 0.00 2.29
354 355 4.473444 TCATCTGGCTTTTCTGGTTTTCT 58.527 39.130 0.00 0.00 0.00 2.52
355 356 4.895297 TCATCTGGCTTTTCTGGTTTTCTT 59.105 37.500 0.00 0.00 0.00 2.52
356 357 4.654091 TCTGGCTTTTCTGGTTTTCTTG 57.346 40.909 0.00 0.00 0.00 3.02
357 358 4.277476 TCTGGCTTTTCTGGTTTTCTTGA 58.723 39.130 0.00 0.00 0.00 3.02
358 359 4.097892 TCTGGCTTTTCTGGTTTTCTTGAC 59.902 41.667 0.00 0.00 0.00 3.18
359 360 3.132111 TGGCTTTTCTGGTTTTCTTGACC 59.868 43.478 0.00 0.00 37.69 4.02
360 361 3.132111 GGCTTTTCTGGTTTTCTTGACCA 59.868 43.478 0.00 0.00 44.59 4.02
370 371 7.654022 TGGTTTTCTTGACCAGTTCTTAATT 57.346 32.000 0.00 0.00 42.06 1.40
371 372 8.073467 TGGTTTTCTTGACCAGTTCTTAATTT 57.927 30.769 0.00 0.00 42.06 1.82
372 373 8.536175 TGGTTTTCTTGACCAGTTCTTAATTTT 58.464 29.630 0.00 0.00 42.06 1.82
373 374 8.817100 GGTTTTCTTGACCAGTTCTTAATTTTG 58.183 33.333 0.00 0.00 37.14 2.44
374 375 9.366216 GTTTTCTTGACCAGTTCTTAATTTTGT 57.634 29.630 0.00 0.00 0.00 2.83
377 378 8.974060 TCTTGACCAGTTCTTAATTTTGTAGT 57.026 30.769 0.00 0.00 0.00 2.73
378 379 9.403583 TCTTGACCAGTTCTTAATTTTGTAGTT 57.596 29.630 0.00 0.00 0.00 2.24
396 397 9.849166 TTTGTAGTTTTTAGGTTTGTTCTTCAG 57.151 29.630 0.00 0.00 0.00 3.02
397 398 8.570068 TGTAGTTTTTAGGTTTGTTCTTCAGT 57.430 30.769 0.00 0.00 0.00 3.41
398 399 9.016438 TGTAGTTTTTAGGTTTGTTCTTCAGTT 57.984 29.630 0.00 0.00 0.00 3.16
399 400 9.499585 GTAGTTTTTAGGTTTGTTCTTCAGTTC 57.500 33.333 0.00 0.00 0.00 3.01
400 401 7.248437 AGTTTTTAGGTTTGTTCTTCAGTTCG 58.752 34.615 0.00 0.00 0.00 3.95
401 402 5.744666 TTTAGGTTTGTTCTTCAGTTCGG 57.255 39.130 0.00 0.00 0.00 4.30
402 403 3.277142 AGGTTTGTTCTTCAGTTCGGT 57.723 42.857 0.00 0.00 0.00 4.69
403 404 3.617284 AGGTTTGTTCTTCAGTTCGGTT 58.383 40.909 0.00 0.00 0.00 4.44
404 405 4.014406 AGGTTTGTTCTTCAGTTCGGTTT 58.986 39.130 0.00 0.00 0.00 3.27
405 406 4.461431 AGGTTTGTTCTTCAGTTCGGTTTT 59.539 37.500 0.00 0.00 0.00 2.43
406 407 4.796830 GGTTTGTTCTTCAGTTCGGTTTTC 59.203 41.667 0.00 0.00 0.00 2.29
407 408 5.392703 GGTTTGTTCTTCAGTTCGGTTTTCT 60.393 40.000 0.00 0.00 0.00 2.52
408 409 5.890424 TTGTTCTTCAGTTCGGTTTTCTT 57.110 34.783 0.00 0.00 0.00 2.52
409 410 5.890424 TGTTCTTCAGTTCGGTTTTCTTT 57.110 34.783 0.00 0.00 0.00 2.52
410 411 6.262193 TGTTCTTCAGTTCGGTTTTCTTTT 57.738 33.333 0.00 0.00 0.00 2.27
411 412 6.319399 TGTTCTTCAGTTCGGTTTTCTTTTC 58.681 36.000 0.00 0.00 0.00 2.29
412 413 6.072397 TGTTCTTCAGTTCGGTTTTCTTTTCA 60.072 34.615 0.00 0.00 0.00 2.69
413 414 6.693315 TCTTCAGTTCGGTTTTCTTTTCAT 57.307 33.333 0.00 0.00 0.00 2.57
414 415 7.095695 TCTTCAGTTCGGTTTTCTTTTCATT 57.904 32.000 0.00 0.00 0.00 2.57
415 416 7.543756 TCTTCAGTTCGGTTTTCTTTTCATTT 58.456 30.769 0.00 0.00 0.00 2.32
416 417 8.032451 TCTTCAGTTCGGTTTTCTTTTCATTTT 58.968 29.630 0.00 0.00 0.00 1.82
417 418 7.518731 TCAGTTCGGTTTTCTTTTCATTTTG 57.481 32.000 0.00 0.00 0.00 2.44
418 419 6.035542 TCAGTTCGGTTTTCTTTTCATTTTGC 59.964 34.615 0.00 0.00 0.00 3.68
419 420 6.035975 CAGTTCGGTTTTCTTTTCATTTTGCT 59.964 34.615 0.00 0.00 0.00 3.91
420 421 6.593770 AGTTCGGTTTTCTTTTCATTTTGCTT 59.406 30.769 0.00 0.00 0.00 3.91
421 422 6.976636 TCGGTTTTCTTTTCATTTTGCTTT 57.023 29.167 0.00 0.00 0.00 3.51
422 423 6.999456 TCGGTTTTCTTTTCATTTTGCTTTC 58.001 32.000 0.00 0.00 0.00 2.62
423 424 6.816140 TCGGTTTTCTTTTCATTTTGCTTTCT 59.184 30.769 0.00 0.00 0.00 2.52
424 425 7.333174 TCGGTTTTCTTTTCATTTTGCTTTCTT 59.667 29.630 0.00 0.00 0.00 2.52
425 426 7.635973 CGGTTTTCTTTTCATTTTGCTTTCTTC 59.364 33.333 0.00 0.00 0.00 2.87
426 427 8.668353 GGTTTTCTTTTCATTTTGCTTTCTTCT 58.332 29.630 0.00 0.00 0.00 2.85
565 566 7.410800 TCATGAACATTTCTTGAATTTGTGC 57.589 32.000 0.00 1.23 39.83 4.57
566 567 6.985059 TCATGAACATTTCTTGAATTTGTGCA 59.015 30.769 0.00 8.90 39.83 4.57
567 568 7.494952 TCATGAACATTTCTTGAATTTGTGCAA 59.505 29.630 0.00 0.00 39.83 4.08
568 569 7.606858 TGAACATTTCTTGAATTTGTGCAAA 57.393 28.000 0.00 0.00 34.46 3.68
569 570 8.037382 TGAACATTTCTTGAATTTGTGCAAAA 57.963 26.923 1.26 0.00 33.56 2.44
570 571 7.961827 TGAACATTTCTTGAATTTGTGCAAAAC 59.038 29.630 1.26 0.96 33.56 2.43
571 572 7.375106 ACATTTCTTGAATTTGTGCAAAACA 57.625 28.000 1.26 3.31 36.85 2.83
572 573 7.987649 ACATTTCTTGAATTTGTGCAAAACAT 58.012 26.923 1.26 0.00 38.99 2.71
573 574 8.460428 ACATTTCTTGAATTTGTGCAAAACATT 58.540 25.926 1.26 0.00 38.99 2.71
574 575 9.932699 CATTTCTTGAATTTGTGCAAAACATTA 57.067 25.926 1.26 0.00 38.99 1.90
586 587 9.713740 TTGTGCAAAACATTAAAATTCATGAAC 57.286 25.926 11.07 0.00 38.99 3.18
587 588 8.886719 TGTGCAAAACATTAAAATTCATGAACA 58.113 25.926 11.07 0.00 32.36 3.18
588 589 9.881529 GTGCAAAACATTAAAATTCATGAACAT 57.118 25.926 11.07 0.00 0.00 2.71
689 690 0.590195 CGATAGCAGCTCCCATTTGC 59.410 55.000 0.00 0.00 38.09 3.68
690 691 0.957362 GATAGCAGCTCCCATTTGCC 59.043 55.000 0.00 0.00 38.58 4.52
691 692 0.259647 ATAGCAGCTCCCATTTGCCA 59.740 50.000 0.00 0.00 38.58 4.92
692 693 0.680921 TAGCAGCTCCCATTTGCCAC 60.681 55.000 0.00 0.00 38.58 5.01
693 694 3.010413 GCAGCTCCCATTTGCCACC 62.010 63.158 0.00 0.00 31.79 4.61
694 695 1.304713 CAGCTCCCATTTGCCACCT 60.305 57.895 0.00 0.00 0.00 4.00
695 696 0.034186 CAGCTCCCATTTGCCACCTA 60.034 55.000 0.00 0.00 0.00 3.08
696 697 0.034089 AGCTCCCATTTGCCACCTAC 60.034 55.000 0.00 0.00 0.00 3.18
697 698 0.323360 GCTCCCATTTGCCACCTACA 60.323 55.000 0.00 0.00 0.00 2.74
698 699 1.755179 CTCCCATTTGCCACCTACAG 58.245 55.000 0.00 0.00 0.00 2.74
699 700 0.331278 TCCCATTTGCCACCTACAGG 59.669 55.000 0.00 0.00 42.17 4.00
705 706 2.434359 GCCACCTACAGGCGTCAC 60.434 66.667 0.00 0.00 43.15 3.67
706 707 2.126071 CCACCTACAGGCGTCACG 60.126 66.667 0.00 0.00 39.32 4.35
707 708 2.649034 CACCTACAGGCGTCACGT 59.351 61.111 0.00 0.00 39.32 4.49
708 709 1.588824 CCACCTACAGGCGTCACGTA 61.589 60.000 0.00 0.00 39.32 3.57
709 710 0.179171 CACCTACAGGCGTCACGTAG 60.179 60.000 0.00 9.08 39.32 3.51
710 711 1.432251 CCTACAGGCGTCACGTAGG 59.568 63.158 17.91 17.91 44.62 3.18
711 712 2.474561 CTACAGGCGTCACGTAGGA 58.525 57.895 0.00 0.00 31.03 2.94
712 713 0.377554 CTACAGGCGTCACGTAGGAG 59.622 60.000 0.00 0.00 31.03 3.69
713 714 1.028330 TACAGGCGTCACGTAGGAGG 61.028 60.000 0.00 0.00 0.00 4.30
714 715 2.035312 AGGCGTCACGTAGGAGGT 59.965 61.111 0.00 0.00 0.00 3.85
715 716 2.045131 AGGCGTCACGTAGGAGGTC 61.045 63.158 0.00 0.00 0.00 3.85
716 717 2.045131 GGCGTCACGTAGGAGGTCT 61.045 63.158 0.00 0.00 0.00 3.85
717 718 1.593296 GGCGTCACGTAGGAGGTCTT 61.593 60.000 0.00 0.00 0.00 3.01
718 719 0.456312 GCGTCACGTAGGAGGTCTTG 60.456 60.000 0.00 0.00 0.00 3.02
719 720 0.879765 CGTCACGTAGGAGGTCTTGT 59.120 55.000 0.00 0.00 0.00 3.16
720 721 1.135746 CGTCACGTAGGAGGTCTTGTC 60.136 57.143 0.00 0.00 0.00 3.18
721 722 1.884579 GTCACGTAGGAGGTCTTGTCA 59.115 52.381 0.00 0.00 0.00 3.58
722 723 1.884579 TCACGTAGGAGGTCTTGTCAC 59.115 52.381 0.00 0.00 0.00 3.67
723 724 1.067776 CACGTAGGAGGTCTTGTCACC 60.068 57.143 0.00 0.00 36.58 4.02
736 737 7.918076 AGGTCTTGTCACCTTTATTAATGAGA 58.082 34.615 0.00 0.00 45.24 3.27
737 738 8.043710 AGGTCTTGTCACCTTTATTAATGAGAG 58.956 37.037 0.00 0.00 45.24 3.20
738 739 7.201652 GGTCTTGTCACCTTTATTAATGAGAGC 60.202 40.741 0.00 0.00 33.08 4.09
739 740 7.550906 GTCTTGTCACCTTTATTAATGAGAGCT 59.449 37.037 0.00 0.00 0.00 4.09
740 741 8.758829 TCTTGTCACCTTTATTAATGAGAGCTA 58.241 33.333 0.00 0.00 0.00 3.32
741 742 9.383519 CTTGTCACCTTTATTAATGAGAGCTAA 57.616 33.333 0.00 0.00 0.00 3.09
742 743 9.733556 TTGTCACCTTTATTAATGAGAGCTAAA 57.266 29.630 0.00 0.00 0.00 1.85
743 744 9.733556 TGTCACCTTTATTAATGAGAGCTAAAA 57.266 29.630 0.00 0.00 0.00 1.52
747 748 9.190317 ACCTTTATTAATGAGAGCTAAAAAGGG 57.810 33.333 18.24 6.33 42.94 3.95
748 749 8.633561 CCTTTATTAATGAGAGCTAAAAAGGGG 58.366 37.037 10.71 0.00 37.73 4.79
749 750 9.190317 CTTTATTAATGAGAGCTAAAAAGGGGT 57.810 33.333 0.00 0.00 0.00 4.95
750 751 9.541884 TTTATTAATGAGAGCTAAAAAGGGGTT 57.458 29.630 0.00 0.00 0.00 4.11
752 753 8.753497 ATTAATGAGAGCTAAAAAGGGGTTAG 57.247 34.615 0.00 0.00 0.00 2.34
753 754 4.569719 TGAGAGCTAAAAAGGGGTTAGG 57.430 45.455 0.00 0.00 0.00 2.69
754 755 3.265995 TGAGAGCTAAAAAGGGGTTAGGG 59.734 47.826 0.00 0.00 0.00 3.53
755 756 3.266254 GAGAGCTAAAAAGGGGTTAGGGT 59.734 47.826 0.00 0.00 0.00 4.34
756 757 3.661161 AGAGCTAAAAAGGGGTTAGGGTT 59.339 43.478 0.00 0.00 0.00 4.11
757 758 4.107473 AGAGCTAAAAAGGGGTTAGGGTTT 59.893 41.667 0.00 0.00 0.00 3.27
758 759 5.314039 AGAGCTAAAAAGGGGTTAGGGTTTA 59.686 40.000 0.00 0.00 0.00 2.01
759 760 5.577100 AGCTAAAAAGGGGTTAGGGTTTAG 58.423 41.667 0.00 0.00 33.63 1.85
760 761 4.708421 GCTAAAAAGGGGTTAGGGTTTAGG 59.292 45.833 0.00 0.00 31.98 2.69
761 762 3.839323 AAAAGGGGTTAGGGTTTAGGG 57.161 47.619 0.00 0.00 0.00 3.53
762 763 2.463671 AAGGGGTTAGGGTTTAGGGT 57.536 50.000 0.00 0.00 0.00 4.34
763 764 2.463671 AGGGGTTAGGGTTTAGGGTT 57.536 50.000 0.00 0.00 0.00 4.11
764 765 2.281966 AGGGGTTAGGGTTTAGGGTTC 58.718 52.381 0.00 0.00 0.00 3.62
765 766 1.994794 GGGGTTAGGGTTTAGGGTTCA 59.005 52.381 0.00 0.00 0.00 3.18
766 767 2.584031 GGGGTTAGGGTTTAGGGTTCAT 59.416 50.000 0.00 0.00 0.00 2.57
767 768 3.626475 GGGGTTAGGGTTTAGGGTTCATG 60.626 52.174 0.00 0.00 0.00 3.07
768 769 3.010920 GGGTTAGGGTTTAGGGTTCATGT 59.989 47.826 0.00 0.00 0.00 3.21
769 770 4.509663 GGGTTAGGGTTTAGGGTTCATGTT 60.510 45.833 0.00 0.00 0.00 2.71
770 771 5.081728 GGTTAGGGTTTAGGGTTCATGTTT 58.918 41.667 0.00 0.00 0.00 2.83
771 772 6.247676 GGTTAGGGTTTAGGGTTCATGTTTA 58.752 40.000 0.00 0.00 0.00 2.01
772 773 6.376299 GGTTAGGGTTTAGGGTTCATGTTTAG 59.624 42.308 0.00 0.00 0.00 1.85
773 774 4.930696 AGGGTTTAGGGTTCATGTTTAGG 58.069 43.478 0.00 0.00 0.00 2.69
774 775 4.355889 AGGGTTTAGGGTTCATGTTTAGGT 59.644 41.667 0.00 0.00 0.00 3.08
775 776 5.081728 GGGTTTAGGGTTCATGTTTAGGTT 58.918 41.667 0.00 0.00 0.00 3.50
776 777 5.541101 GGGTTTAGGGTTCATGTTTAGGTTT 59.459 40.000 0.00 0.00 0.00 3.27
777 778 6.294899 GGGTTTAGGGTTCATGTTTAGGTTTC 60.295 42.308 0.00 0.00 0.00 2.78
778 779 6.265876 GGTTTAGGGTTCATGTTTAGGTTTCA 59.734 38.462 0.00 0.00 0.00 2.69
779 780 7.368059 GTTTAGGGTTCATGTTTAGGTTTCAG 58.632 38.462 0.00 0.00 0.00 3.02
780 781 4.407365 AGGGTTCATGTTTAGGTTTCAGG 58.593 43.478 0.00 0.00 0.00 3.86
781 782 3.509967 GGGTTCATGTTTAGGTTTCAGGG 59.490 47.826 0.00 0.00 0.00 4.45
782 783 4.149598 GGTTCATGTTTAGGTTTCAGGGT 58.850 43.478 0.00 0.00 0.00 4.34
799 800 1.079336 GTCGCGGCTAGGGTTTTCT 60.079 57.895 1.90 0.00 0.00 2.52
807 809 1.137282 GCTAGGGTTTTCTCTCCTCCG 59.863 57.143 0.00 0.00 32.46 4.63
808 810 2.736347 CTAGGGTTTTCTCTCCTCCGA 58.264 52.381 0.00 0.00 32.46 4.55
849 851 0.944386 CCCTGTCCAACACAAACTCG 59.056 55.000 0.00 0.00 33.31 4.18
887 890 2.434884 CCAGCGAGTCCGTTGCAT 60.435 61.111 0.00 0.00 44.10 3.96
900 905 3.074412 CCGTTGCATCTACAAAACCTCT 58.926 45.455 0.00 0.00 0.00 3.69
903 908 3.350219 TGCATCTACAAAACCTCTCCC 57.650 47.619 0.00 0.00 0.00 4.30
931 937 1.303643 CTTGGGCCTGTCTTGTCCC 60.304 63.158 4.53 0.00 39.22 4.46
932 938 2.067932 CTTGGGCCTGTCTTGTCCCA 62.068 60.000 4.53 0.00 46.34 4.37
1143 1149 2.057922 AGGGTTCACATGGACAAGTCT 58.942 47.619 0.00 0.00 0.00 3.24
1234 1240 2.178912 GGTTGGACCGAATCTGTTCA 57.821 50.000 0.00 0.00 33.86 3.18
1297 1303 2.380064 TCAAGGACCATGGCTGTTTT 57.620 45.000 13.04 0.00 0.00 2.43
1399 1405 4.233005 GCTTCAAATTCACAAGCTTCCTC 58.767 43.478 0.00 0.00 39.61 3.71
1445 1452 2.094182 GCAACATCTACTCCGGAACTCA 60.094 50.000 5.23 0.00 0.00 3.41
1469 1476 3.842007 AAGATCTTGGAGATGAGGCTG 57.158 47.619 7.30 0.00 34.53 4.85
1494 1501 7.951806 TGAACGGAAATACTAGAGGGGATTATA 59.048 37.037 0.00 0.00 0.00 0.98
1497 1504 7.284944 ACGGAAATACTAGAGGGGATTATATCG 59.715 40.741 0.00 0.00 0.00 2.92
1600 1607 3.680490 TGGTGCGTTATGAGAAATTGGA 58.320 40.909 0.00 0.00 0.00 3.53
1609 1616 8.181573 GCGTTATGAGAAATTGGACAGATTTTA 58.818 33.333 0.00 0.00 0.00 1.52
1625 1632 1.225855 TTTACAGCGTCTGTGGCTTG 58.774 50.000 18.70 0.00 45.01 4.01
1725 1733 3.199071 TGATGGCCCTAATAGACAACGTT 59.801 43.478 0.00 0.00 0.00 3.99
1811 1822 1.076044 CATGGGGGTGGTTGATCCC 60.076 63.158 0.00 0.00 46.11 3.85
1823 1834 3.071023 TGGTTGATCCCGATATTCTGGAC 59.929 47.826 0.00 0.00 32.52 4.02
1827 1838 3.903714 TGATCCCGATATTCTGGACACAT 59.096 43.478 0.00 0.00 32.52 3.21
1849 1860 1.140312 ACAAGCCCCTCAAAGACTGA 58.860 50.000 0.00 0.00 0.00 3.41
1875 1886 1.688884 TCCATGCAGGTGGATCCGA 60.689 57.895 7.39 0.00 43.20 4.55
1904 1915 4.726825 AGGAAAAGGTTAGCTATGGATGGA 59.273 41.667 0.00 0.00 0.00 3.41
1911 1922 4.381411 GTTAGCTATGGATGGAGTGAACC 58.619 47.826 0.00 0.00 0.00 3.62
1928 1939 1.676967 CCCTGAAGAGGTGCTTGGC 60.677 63.158 0.00 0.00 37.73 4.52
1938 1949 2.752358 TGCTTGGCACCCAGAGAG 59.248 61.111 0.00 0.00 33.81 3.20
1950 1961 1.563410 CCCAGAGAGCAAAGGAGGATT 59.437 52.381 0.00 0.00 0.00 3.01
2047 2060 4.083802 AGCAAAAACTAGTTCAGACGATGC 60.084 41.667 8.95 11.21 0.00 3.91
2049 2062 5.747565 CAAAAACTAGTTCAGACGATGCAA 58.252 37.500 8.95 0.00 0.00 4.08
2185 2203 1.529244 CAATTCCCCGGGGCTCATC 60.529 63.158 36.68 0.00 34.68 2.92
2191 2209 2.378634 CCCGGGGCTCATCTTCCTT 61.379 63.158 14.71 0.00 0.00 3.36
2195 2213 1.762957 CGGGGCTCATCTTCCTTTCTA 59.237 52.381 0.00 0.00 0.00 2.10
2245 2263 3.825014 AGCGACTTAAGTGGAGACTACAA 59.175 43.478 20.43 0.00 0.00 2.41
2602 2620 4.588899 ACTGCCTGTTAGCATGTGAATTA 58.411 39.130 0.00 0.00 43.09 1.40
2604 2622 5.066893 ACTGCCTGTTAGCATGTGAATTATG 59.933 40.000 0.00 0.00 43.09 1.90
2641 2659 2.257034 GGAGTTCCGTTCACATACGAC 58.743 52.381 0.00 0.00 43.99 4.34
2642 2660 2.257034 GAGTTCCGTTCACATACGACC 58.743 52.381 0.00 0.00 43.99 4.79
2643 2661 1.067354 AGTTCCGTTCACATACGACCC 60.067 52.381 0.00 0.00 43.99 4.46
2644 2662 1.067354 GTTCCGTTCACATACGACCCT 60.067 52.381 0.00 0.00 43.99 4.34
2645 2663 0.528924 TCCGTTCACATACGACCCTG 59.471 55.000 0.00 0.00 43.99 4.45
2646 2664 0.245539 CCGTTCACATACGACCCTGT 59.754 55.000 0.00 0.00 43.99 4.00
2647 2665 1.337447 CCGTTCACATACGACCCTGTT 60.337 52.381 0.00 0.00 43.99 3.16
2648 2666 1.990563 CGTTCACATACGACCCTGTTC 59.009 52.381 0.00 0.00 43.99 3.18
2649 2667 2.608506 CGTTCACATACGACCCTGTTCA 60.609 50.000 0.00 0.00 43.99 3.18
2650 2668 3.395639 GTTCACATACGACCCTGTTCAA 58.604 45.455 0.00 0.00 0.00 2.69
2651 2669 3.313012 TCACATACGACCCTGTTCAAG 57.687 47.619 0.00 0.00 0.00 3.02
2652 2670 2.894765 TCACATACGACCCTGTTCAAGA 59.105 45.455 0.00 0.00 0.00 3.02
2653 2671 3.322541 TCACATACGACCCTGTTCAAGAA 59.677 43.478 0.00 0.00 0.00 2.52
2654 2672 4.020573 TCACATACGACCCTGTTCAAGAAT 60.021 41.667 0.00 0.00 0.00 2.40
2655 2673 4.695455 CACATACGACCCTGTTCAAGAATT 59.305 41.667 0.00 0.00 0.00 2.17
2656 2674 4.935808 ACATACGACCCTGTTCAAGAATTC 59.064 41.667 0.00 0.00 0.00 2.17
2657 2675 2.413837 ACGACCCTGTTCAAGAATTCG 58.586 47.619 0.00 0.00 0.00 3.34
2658 2676 2.224209 ACGACCCTGTTCAAGAATTCGT 60.224 45.455 0.00 0.00 32.74 3.85
2659 2677 2.806244 CGACCCTGTTCAAGAATTCGTT 59.194 45.455 0.00 0.00 0.00 3.85
2660 2678 3.120649 CGACCCTGTTCAAGAATTCGTTC 60.121 47.826 0.00 0.00 0.00 3.95
2661 2679 3.813166 GACCCTGTTCAAGAATTCGTTCA 59.187 43.478 0.00 0.00 0.00 3.18
2662 2680 4.398319 ACCCTGTTCAAGAATTCGTTCAT 58.602 39.130 0.00 0.00 0.00 2.57
2663 2681 4.827284 ACCCTGTTCAAGAATTCGTTCATT 59.173 37.500 0.00 0.00 0.00 2.57
2664 2682 5.301805 ACCCTGTTCAAGAATTCGTTCATTT 59.698 36.000 0.00 0.00 0.00 2.32
2665 2683 6.488683 ACCCTGTTCAAGAATTCGTTCATTTA 59.511 34.615 0.00 0.00 0.00 1.40
2666 2684 7.013846 ACCCTGTTCAAGAATTCGTTCATTTAA 59.986 33.333 0.00 0.00 0.00 1.52
2667 2685 7.326063 CCCTGTTCAAGAATTCGTTCATTTAAC 59.674 37.037 0.00 0.00 34.52 2.01
2668 2686 7.860373 CCTGTTCAAGAATTCGTTCATTTAACA 59.140 33.333 0.00 2.58 38.03 2.41
2669 2687 9.232082 CTGTTCAAGAATTCGTTCATTTAACAA 57.768 29.630 0.00 0.00 38.03 2.83
2670 2688 9.232082 TGTTCAAGAATTCGTTCATTTAACAAG 57.768 29.630 0.00 0.00 38.03 3.16
2671 2689 9.233232 GTTCAAGAATTCGTTCATTTAACAAGT 57.767 29.630 0.00 0.00 38.03 3.16
2672 2690 9.796120 TTCAAGAATTCGTTCATTTAACAAGTT 57.204 25.926 0.00 0.00 38.03 2.66
2690 2708 6.436843 CAAGTTAACTTGCGGATTAATCCT 57.563 37.500 29.92 13.52 45.59 3.24
2691 2709 6.852664 CAAGTTAACTTGCGGATTAATCCTT 58.147 36.000 29.92 18.52 45.59 3.36
2692 2710 7.981142 CAAGTTAACTTGCGGATTAATCCTTA 58.019 34.615 29.92 17.63 45.59 2.69
2693 2711 8.621286 CAAGTTAACTTGCGGATTAATCCTTAT 58.379 33.333 29.92 12.96 45.59 1.73
2694 2712 8.747538 AGTTAACTTGCGGATTAATCCTTATT 57.252 30.769 27.86 17.67 44.93 1.40
2695 2713 8.837389 AGTTAACTTGCGGATTAATCCTTATTC 58.163 33.333 27.86 15.60 44.93 1.75
2696 2714 5.924475 ACTTGCGGATTAATCCTTATTCG 57.076 39.130 27.86 16.44 44.93 3.34
2697 2715 5.365619 ACTTGCGGATTAATCCTTATTCGT 58.634 37.500 27.86 15.76 44.93 3.85
2698 2716 6.518493 ACTTGCGGATTAATCCTTATTCGTA 58.482 36.000 27.86 13.04 44.93 3.43
2699 2717 6.645415 ACTTGCGGATTAATCCTTATTCGTAG 59.355 38.462 27.86 17.08 44.93 3.51
2700 2718 5.475719 TGCGGATTAATCCTTATTCGTAGG 58.524 41.667 27.86 12.24 44.93 3.18
2701 2719 4.868734 GCGGATTAATCCTTATTCGTAGGG 59.131 45.833 27.86 11.80 44.93 3.53
2702 2720 5.568223 GCGGATTAATCCTTATTCGTAGGGT 60.568 44.000 27.86 0.00 44.93 4.34
2703 2721 6.098017 CGGATTAATCCTTATTCGTAGGGTC 58.902 44.000 27.86 0.92 44.93 4.46
2704 2722 6.294899 CGGATTAATCCTTATTCGTAGGGTCA 60.295 42.308 27.86 0.00 44.93 4.02
2705 2723 6.872547 GGATTAATCCTTATTCGTAGGGTCAC 59.127 42.308 24.74 0.00 43.73 3.67
2706 2724 4.684484 AATCCTTATTCGTAGGGTCACC 57.316 45.455 0.00 0.00 33.41 4.02
2707 2725 2.026641 TCCTTATTCGTAGGGTCACCG 58.973 52.381 0.00 0.00 43.47 4.94
2708 2726 2.026641 CCTTATTCGTAGGGTCACCGA 58.973 52.381 0.00 0.00 43.47 4.69
2709 2727 2.034305 CCTTATTCGTAGGGTCACCGAG 59.966 54.545 0.00 0.00 43.47 4.63
2710 2728 2.425143 TATTCGTAGGGTCACCGAGT 57.575 50.000 0.00 0.00 43.47 4.18
2711 2729 2.425143 ATTCGTAGGGTCACCGAGTA 57.575 50.000 0.00 0.00 43.47 2.59
2712 2730 1.742761 TTCGTAGGGTCACCGAGTAG 58.257 55.000 0.00 0.00 43.47 2.57
2713 2731 0.745845 TCGTAGGGTCACCGAGTAGC 60.746 60.000 0.00 0.00 43.47 3.58
2714 2732 1.722636 CGTAGGGTCACCGAGTAGCC 61.723 65.000 0.00 0.00 43.47 3.93
2715 2733 1.452651 TAGGGTCACCGAGTAGCCG 60.453 63.158 0.00 0.00 43.47 5.52
2716 2734 1.913951 TAGGGTCACCGAGTAGCCGA 61.914 60.000 0.00 0.00 43.47 5.54
2717 2735 2.488820 GGTCACCGAGTAGCCGAC 59.511 66.667 0.00 0.00 0.00 4.79
2718 2736 2.045131 GGTCACCGAGTAGCCGACT 61.045 63.158 0.00 0.00 42.90 4.18
2719 2737 0.745845 GGTCACCGAGTAGCCGACTA 60.746 60.000 0.00 0.00 39.06 2.59
2720 2738 1.089920 GTCACCGAGTAGCCGACTAA 58.910 55.000 0.00 0.00 39.06 2.24
2721 2739 1.089920 TCACCGAGTAGCCGACTAAC 58.910 55.000 0.00 0.00 39.06 2.34
2722 2740 0.100146 CACCGAGTAGCCGACTAACC 59.900 60.000 0.00 0.00 39.06 2.85
2723 2741 1.354506 CCGAGTAGCCGACTAACCG 59.645 63.158 0.00 0.00 39.06 4.44
2724 2742 1.091771 CCGAGTAGCCGACTAACCGA 61.092 60.000 3.33 0.00 39.06 4.69
2725 2743 0.942962 CGAGTAGCCGACTAACCGAT 59.057 55.000 0.00 0.00 39.06 4.18
2726 2744 2.138320 CGAGTAGCCGACTAACCGATA 58.862 52.381 0.00 0.00 39.06 2.92
2727 2745 2.545526 CGAGTAGCCGACTAACCGATAA 59.454 50.000 0.00 0.00 39.06 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.364110 CTTAAACCATGCGTTCAAATTTTAAAC 57.636 29.630 0.00 0.00 31.78 2.01
2 3 9.314321 TCTTAAACCATGCGTTCAAATTTTAAA 57.686 25.926 0.00 0.00 31.78 1.52
3 4 8.873215 TCTTAAACCATGCGTTCAAATTTTAA 57.127 26.923 0.00 0.00 31.78 1.52
4 5 8.353684 TCTCTTAAACCATGCGTTCAAATTTTA 58.646 29.630 0.00 0.00 31.78 1.52
5 6 7.206687 TCTCTTAAACCATGCGTTCAAATTTT 58.793 30.769 0.00 0.00 31.78 1.82
6 7 6.744112 TCTCTTAAACCATGCGTTCAAATTT 58.256 32.000 0.83 0.00 31.78 1.82
7 8 6.325919 TCTCTTAAACCATGCGTTCAAATT 57.674 33.333 0.83 0.00 31.78 1.82
8 9 5.957842 TCTCTTAAACCATGCGTTCAAAT 57.042 34.783 0.83 0.00 31.78 2.32
9 10 5.471797 TCATCTCTTAAACCATGCGTTCAAA 59.528 36.000 0.83 0.00 31.78 2.69
10 11 5.000591 TCATCTCTTAAACCATGCGTTCAA 58.999 37.500 0.83 0.00 31.78 2.69
11 12 4.574892 TCATCTCTTAAACCATGCGTTCA 58.425 39.130 0.83 0.00 31.78 3.18
12 13 5.545658 TTCATCTCTTAAACCATGCGTTC 57.454 39.130 0.83 0.00 31.78 3.95
13 14 5.957842 TTTCATCTCTTAAACCATGCGTT 57.042 34.783 0.00 0.00 35.70 4.84
14 15 5.415701 ACATTTCATCTCTTAAACCATGCGT 59.584 36.000 0.00 0.00 0.00 5.24
15 16 5.883661 ACATTTCATCTCTTAAACCATGCG 58.116 37.500 0.00 0.00 0.00 4.73
16 17 8.538409 AAAACATTTCATCTCTTAAACCATGC 57.462 30.769 0.00 0.00 0.00 4.06
62 63 4.082463 TCGCAACCTGTGAGTTTTCTTTTT 60.082 37.500 0.00 0.00 31.05 1.94
63 64 3.442273 TCGCAACCTGTGAGTTTTCTTTT 59.558 39.130 0.00 0.00 31.05 2.27
64 65 3.013921 TCGCAACCTGTGAGTTTTCTTT 58.986 40.909 0.00 0.00 31.05 2.52
65 66 2.354821 GTCGCAACCTGTGAGTTTTCTT 59.645 45.455 0.00 0.00 37.59 2.52
66 67 1.940613 GTCGCAACCTGTGAGTTTTCT 59.059 47.619 0.00 0.00 37.59 2.52
67 68 1.668751 TGTCGCAACCTGTGAGTTTTC 59.331 47.619 0.00 0.00 37.59 2.29
68 69 1.745232 TGTCGCAACCTGTGAGTTTT 58.255 45.000 0.00 0.00 37.59 2.43
69 70 1.670811 CTTGTCGCAACCTGTGAGTTT 59.329 47.619 0.00 0.00 37.59 2.66
70 71 1.299541 CTTGTCGCAACCTGTGAGTT 58.700 50.000 0.00 0.00 37.59 3.01
71 72 0.178068 ACTTGTCGCAACCTGTGAGT 59.822 50.000 0.00 0.00 37.59 3.41
72 73 0.583438 CACTTGTCGCAACCTGTGAG 59.417 55.000 0.00 0.00 37.59 3.51
73 74 0.813610 CCACTTGTCGCAACCTGTGA 60.814 55.000 10.04 0.00 34.04 3.58
74 75 1.648720 CCACTTGTCGCAACCTGTG 59.351 57.895 0.00 0.00 0.00 3.66
75 76 2.186826 GCCACTTGTCGCAACCTGT 61.187 57.895 0.00 0.00 0.00 4.00
76 77 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
77 78 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
96 97 1.441515 CAAGTGACGCACATGCAGC 60.442 57.895 11.58 0.00 42.21 5.25
97 98 0.110509 GACAAGTGACGCACATGCAG 60.111 55.000 12.77 0.00 36.67 4.41
98 99 1.830368 CGACAAGTGACGCACATGCA 61.830 55.000 12.77 0.00 36.67 3.96
99 100 1.154599 CGACAAGTGACGCACATGC 60.155 57.895 12.77 0.00 36.67 4.06
106 107 1.202568 CAAGCTGCGACAAGTGACG 59.797 57.895 0.00 0.00 36.38 4.35
107 108 0.937304 TTCAAGCTGCGACAAGTGAC 59.063 50.000 0.00 0.00 0.00 3.67
108 109 1.662517 TTTCAAGCTGCGACAAGTGA 58.337 45.000 0.00 0.00 0.00 3.41
109 110 2.223340 ACTTTTCAAGCTGCGACAAGTG 60.223 45.455 14.11 0.00 33.33 3.16
110 111 2.017049 ACTTTTCAAGCTGCGACAAGT 58.983 42.857 10.62 10.62 30.47 3.16
111 112 2.763249 ACTTTTCAAGCTGCGACAAG 57.237 45.000 9.61 9.61 0.00 3.16
112 113 2.479389 CCAACTTTTCAAGCTGCGACAA 60.479 45.455 0.00 0.00 0.00 3.18
113 114 1.065401 CCAACTTTTCAAGCTGCGACA 59.935 47.619 0.00 0.00 0.00 4.35
114 115 1.333619 TCCAACTTTTCAAGCTGCGAC 59.666 47.619 0.00 0.00 0.00 5.19
115 116 1.603802 CTCCAACTTTTCAAGCTGCGA 59.396 47.619 0.00 0.00 0.00 5.10
116 117 1.334869 ACTCCAACTTTTCAAGCTGCG 59.665 47.619 0.00 0.00 0.00 5.18
117 118 4.568152 TTACTCCAACTTTTCAAGCTGC 57.432 40.909 0.00 0.00 0.00 5.25
118 119 6.566197 AGATTACTCCAACTTTTCAAGCTG 57.434 37.500 0.00 0.00 0.00 4.24
119 120 7.068716 ACAAAGATTACTCCAACTTTTCAAGCT 59.931 33.333 0.00 0.00 31.52 3.74
120 121 7.203218 ACAAAGATTACTCCAACTTTTCAAGC 58.797 34.615 0.00 0.00 31.52 4.01
123 124 8.339714 CGTTACAAAGATTACTCCAACTTTTCA 58.660 33.333 0.00 0.00 31.52 2.69
124 125 8.553696 TCGTTACAAAGATTACTCCAACTTTTC 58.446 33.333 0.00 0.00 31.52 2.29
125 126 8.441312 TCGTTACAAAGATTACTCCAACTTTT 57.559 30.769 0.00 0.00 31.52 2.27
126 127 7.713942 ACTCGTTACAAAGATTACTCCAACTTT 59.286 33.333 0.00 0.00 33.69 2.66
127 128 7.215085 ACTCGTTACAAAGATTACTCCAACTT 58.785 34.615 0.00 0.00 0.00 2.66
128 129 6.756221 ACTCGTTACAAAGATTACTCCAACT 58.244 36.000 0.00 0.00 0.00 3.16
129 130 7.811713 AGTACTCGTTACAAAGATTACTCCAAC 59.188 37.037 0.00 0.00 31.08 3.77
130 131 7.889469 AGTACTCGTTACAAAGATTACTCCAA 58.111 34.615 0.00 0.00 31.08 3.53
131 132 7.458409 AGTACTCGTTACAAAGATTACTCCA 57.542 36.000 0.00 0.00 31.08 3.86
132 133 7.967771 GAGTACTCGTTACAAAGATTACTCC 57.032 40.000 17.04 6.62 40.40 3.85
133 134 7.760437 AGGAGTACTCGTTACAAAGATTACTC 58.240 38.462 16.56 18.45 42.81 2.59
134 135 7.700022 AGGAGTACTCGTTACAAAGATTACT 57.300 36.000 16.56 7.35 36.28 2.24
135 136 7.967771 GAGGAGTACTCGTTACAAAGATTAC 57.032 40.000 18.54 0.00 36.29 1.89
149 150 5.746245 CGAAATCATCACTTGAGGAGTACTC 59.254 44.000 14.87 14.87 46.78 2.59
150 151 5.186021 ACGAAATCATCACTTGAGGAGTACT 59.814 40.000 0.00 0.00 38.31 2.73
151 152 5.411781 ACGAAATCATCACTTGAGGAGTAC 58.588 41.667 0.00 0.00 38.31 2.73
152 153 5.394224 GGACGAAATCATCACTTGAGGAGTA 60.394 44.000 0.00 0.00 38.31 2.59
153 154 4.499183 GACGAAATCATCACTTGAGGAGT 58.501 43.478 0.00 0.00 38.31 3.85
154 155 3.868077 GGACGAAATCATCACTTGAGGAG 59.132 47.826 0.00 0.00 38.31 3.69
155 156 3.260632 TGGACGAAATCATCACTTGAGGA 59.739 43.478 0.00 0.00 39.30 3.71
156 157 3.599343 TGGACGAAATCATCACTTGAGG 58.401 45.455 0.00 0.00 37.89 3.86
157 158 4.872124 TGATGGACGAAATCATCACTTGAG 59.128 41.667 0.00 0.00 43.09 3.02
158 159 4.831107 TGATGGACGAAATCATCACTTGA 58.169 39.130 0.00 0.00 43.09 3.02
163 164 4.142249 ACGTAGTGATGGACGAAATCATCA 60.142 41.667 0.89 0.00 44.95 3.07
164 165 4.360563 ACGTAGTGATGGACGAAATCATC 58.639 43.478 0.89 0.00 42.51 2.92
165 166 4.386867 ACGTAGTGATGGACGAAATCAT 57.613 40.909 0.89 0.00 42.51 2.45
166 167 3.861276 ACGTAGTGATGGACGAAATCA 57.139 42.857 0.89 0.00 42.51 2.57
167 168 5.398711 GTGATACGTAGTGATGGACGAAATC 59.601 44.000 0.08 4.90 45.73 2.17
168 169 5.163591 TGTGATACGTAGTGATGGACGAAAT 60.164 40.000 0.08 0.00 45.73 2.17
169 170 4.156373 TGTGATACGTAGTGATGGACGAAA 59.844 41.667 0.08 0.00 45.73 3.46
170 171 3.690628 TGTGATACGTAGTGATGGACGAA 59.309 43.478 0.08 0.00 45.73 3.85
171 172 3.064408 GTGTGATACGTAGTGATGGACGA 59.936 47.826 0.08 0.00 45.73 4.20
172 173 3.360533 GTGTGATACGTAGTGATGGACG 58.639 50.000 0.08 0.00 45.73 4.79
185 186 3.252484 GGGCGACGCGTGTGATAC 61.252 66.667 20.70 0.00 0.00 2.24
186 187 3.750155 TGGGCGACGCGTGTGATA 61.750 61.111 20.70 0.00 0.00 2.15
200 201 4.514577 CTAGAGGCGGTGCGTGGG 62.515 72.222 0.00 0.00 0.00 4.61
201 202 3.760035 ACTAGAGGCGGTGCGTGG 61.760 66.667 0.00 0.00 0.00 4.94
202 203 2.507102 CACTAGAGGCGGTGCGTG 60.507 66.667 0.00 0.00 0.00 5.34
203 204 3.760035 CCACTAGAGGCGGTGCGT 61.760 66.667 0.00 0.00 32.68 5.24
204 205 4.514577 CCCACTAGAGGCGGTGCG 62.515 72.222 0.00 0.00 32.68 5.34
205 206 4.840005 GCCCACTAGAGGCGGTGC 62.840 72.222 11.84 1.70 41.41 5.01
211 212 3.854669 CGGGCAGCCCACTAGAGG 61.855 72.222 30.86 8.16 45.83 3.69
212 213 1.327690 TAACGGGCAGCCCACTAGAG 61.328 60.000 30.86 15.09 45.83 2.43
213 214 1.305465 TAACGGGCAGCCCACTAGA 60.305 57.895 30.86 7.37 45.83 2.43
214 215 1.144057 CTAACGGGCAGCCCACTAG 59.856 63.158 30.86 23.41 45.83 2.57
215 216 1.611261 ACTAACGGGCAGCCCACTA 60.611 57.895 30.86 18.51 45.83 2.74
216 217 2.928396 ACTAACGGGCAGCCCACT 60.928 61.111 30.86 18.36 45.83 4.00
217 218 2.746277 CACTAACGGGCAGCCCAC 60.746 66.667 30.86 4.22 45.83 4.61
218 219 4.028490 CCACTAACGGGCAGCCCA 62.028 66.667 30.86 10.27 45.83 5.36
219 220 4.796495 CCCACTAACGGGCAGCCC 62.796 72.222 22.33 22.33 40.07 5.19
220 221 4.796495 CCCCACTAACGGGCAGCC 62.796 72.222 1.26 1.26 45.90 4.85
221 222 3.262448 TTCCCCACTAACGGGCAGC 62.262 63.158 0.00 0.00 45.90 5.25
222 223 1.078426 CTTCCCCACTAACGGGCAG 60.078 63.158 0.00 0.00 45.90 4.85
223 224 3.074281 CTTCCCCACTAACGGGCA 58.926 61.111 0.00 0.00 45.90 5.36
224 225 2.437895 GCTTCCCCACTAACGGGC 60.438 66.667 0.00 0.00 45.90 6.13
225 226 2.125269 CGCTTCCCCACTAACGGG 60.125 66.667 0.00 0.00 46.94 5.28
226 227 2.818274 GCGCTTCCCCACTAACGG 60.818 66.667 0.00 0.00 0.00 4.44
227 228 2.818274 GGCGCTTCCCCACTAACG 60.818 66.667 7.64 0.00 0.00 3.18
237 238 4.785453 CAGGTGAGGGGGCGCTTC 62.785 72.222 7.64 6.73 0.00 3.86
244 245 4.715130 TCCCGGTCAGGTGAGGGG 62.715 72.222 0.00 9.03 43.92 4.79
245 246 2.606519 TTCCCGGTCAGGTGAGGG 60.607 66.667 0.00 0.00 45.10 4.30
246 247 2.982130 CTTCCCGGTCAGGTGAGG 59.018 66.667 0.00 0.00 38.74 3.86
247 248 1.831652 AAGCTTCCCGGTCAGGTGAG 61.832 60.000 0.00 0.00 38.74 3.51
248 249 1.827399 GAAGCTTCCCGGTCAGGTGA 61.827 60.000 15.97 0.00 38.74 4.02
249 250 1.376037 GAAGCTTCCCGGTCAGGTG 60.376 63.158 15.97 0.00 38.74 4.00
250 251 2.593956 GGAAGCTTCCCGGTCAGGT 61.594 63.158 31.91 0.00 41.62 4.00
251 252 2.269241 GGAAGCTTCCCGGTCAGG 59.731 66.667 31.91 0.00 41.62 3.86
254 255 2.593956 AGGTGGAAGCTTCCCGGTC 61.594 63.158 36.75 24.41 46.63 4.79
255 256 2.529389 AGGTGGAAGCTTCCCGGT 60.529 61.111 36.75 21.07 46.63 5.28
271 272 0.036875 AAAGCTTCCCAGAACCGGAG 59.963 55.000 9.46 0.00 0.00 4.63
272 273 0.036306 GAAAGCTTCCCAGAACCGGA 59.964 55.000 9.46 0.00 0.00 5.14
273 274 0.250727 TGAAAGCTTCCCAGAACCGG 60.251 55.000 0.00 0.00 0.00 5.28
274 275 1.604604 TTGAAAGCTTCCCAGAACCG 58.395 50.000 0.00 0.00 0.00 4.44
275 276 3.306294 CCATTTGAAAGCTTCCCAGAACC 60.306 47.826 0.00 0.00 0.00 3.62
276 277 3.321968 ACCATTTGAAAGCTTCCCAGAAC 59.678 43.478 0.00 0.00 0.00 3.01
277 278 3.575805 ACCATTTGAAAGCTTCCCAGAA 58.424 40.909 0.00 0.13 0.00 3.02
278 279 3.243359 ACCATTTGAAAGCTTCCCAGA 57.757 42.857 0.00 0.00 0.00 3.86
279 280 4.341366 AAACCATTTGAAAGCTTCCCAG 57.659 40.909 0.00 0.00 0.00 4.45
280 281 4.769345 AAAACCATTTGAAAGCTTCCCA 57.231 36.364 0.00 0.00 0.00 4.37
301 302 9.817365 CACACACACACAAAAATCAAATAAAAA 57.183 25.926 0.00 0.00 0.00 1.94
302 303 8.993121 ACACACACACACAAAAATCAAATAAAA 58.007 25.926 0.00 0.00 0.00 1.52
303 304 8.539770 ACACACACACACAAAAATCAAATAAA 57.460 26.923 0.00 0.00 0.00 1.40
304 305 8.539770 AACACACACACACAAAAATCAAATAA 57.460 26.923 0.00 0.00 0.00 1.40
305 306 8.539770 AAACACACACACACAAAAATCAAATA 57.460 26.923 0.00 0.00 0.00 1.40
306 307 7.387397 AGAAACACACACACACAAAAATCAAAT 59.613 29.630 0.00 0.00 0.00 2.32
307 308 6.703607 AGAAACACACACACACAAAAATCAAA 59.296 30.769 0.00 0.00 0.00 2.69
308 309 6.219473 AGAAACACACACACACAAAAATCAA 58.781 32.000 0.00 0.00 0.00 2.57
309 310 5.777802 AGAAACACACACACACAAAAATCA 58.222 33.333 0.00 0.00 0.00 2.57
310 311 5.861251 TGAGAAACACACACACACAAAAATC 59.139 36.000 0.00 0.00 0.00 2.17
311 312 5.777802 TGAGAAACACACACACACAAAAAT 58.222 33.333 0.00 0.00 0.00 1.82
312 313 5.188327 TGAGAAACACACACACACAAAAA 57.812 34.783 0.00 0.00 0.00 1.94
313 314 4.837896 TGAGAAACACACACACACAAAA 57.162 36.364 0.00 0.00 0.00 2.44
314 315 4.699735 AGATGAGAAACACACACACACAAA 59.300 37.500 0.00 0.00 0.00 2.83
315 316 4.094739 CAGATGAGAAACACACACACACAA 59.905 41.667 0.00 0.00 0.00 3.33
316 317 3.622612 CAGATGAGAAACACACACACACA 59.377 43.478 0.00 0.00 0.00 3.72
317 318 3.002656 CCAGATGAGAAACACACACACAC 59.997 47.826 0.00 0.00 0.00 3.82
318 319 3.205338 CCAGATGAGAAACACACACACA 58.795 45.455 0.00 0.00 0.00 3.72
319 320 2.031682 GCCAGATGAGAAACACACACAC 60.032 50.000 0.00 0.00 0.00 3.82
320 321 2.158769 AGCCAGATGAGAAACACACACA 60.159 45.455 0.00 0.00 0.00 3.72
321 322 2.498167 AGCCAGATGAGAAACACACAC 58.502 47.619 0.00 0.00 0.00 3.82
322 323 2.936919 AGCCAGATGAGAAACACACA 57.063 45.000 0.00 0.00 0.00 3.72
323 324 4.276926 AGAAAAGCCAGATGAGAAACACAC 59.723 41.667 0.00 0.00 0.00 3.82
324 325 4.276678 CAGAAAAGCCAGATGAGAAACACA 59.723 41.667 0.00 0.00 0.00 3.72
325 326 4.320788 CCAGAAAAGCCAGATGAGAAACAC 60.321 45.833 0.00 0.00 0.00 3.32
326 327 3.822735 CCAGAAAAGCCAGATGAGAAACA 59.177 43.478 0.00 0.00 0.00 2.83
327 328 3.823304 ACCAGAAAAGCCAGATGAGAAAC 59.177 43.478 0.00 0.00 0.00 2.78
328 329 4.104383 ACCAGAAAAGCCAGATGAGAAA 57.896 40.909 0.00 0.00 0.00 2.52
329 330 3.795688 ACCAGAAAAGCCAGATGAGAA 57.204 42.857 0.00 0.00 0.00 2.87
330 331 3.795688 AACCAGAAAAGCCAGATGAGA 57.204 42.857 0.00 0.00 0.00 3.27
331 332 4.522022 AGAAAACCAGAAAAGCCAGATGAG 59.478 41.667 0.00 0.00 0.00 2.90
332 333 4.473444 AGAAAACCAGAAAAGCCAGATGA 58.527 39.130 0.00 0.00 0.00 2.92
333 334 4.861102 AGAAAACCAGAAAAGCCAGATG 57.139 40.909 0.00 0.00 0.00 2.90
334 335 4.895297 TCAAGAAAACCAGAAAAGCCAGAT 59.105 37.500 0.00 0.00 0.00 2.90
335 336 4.097892 GTCAAGAAAACCAGAAAAGCCAGA 59.902 41.667 0.00 0.00 0.00 3.86
336 337 4.363138 GTCAAGAAAACCAGAAAAGCCAG 58.637 43.478 0.00 0.00 0.00 4.85
337 338 3.132111 GGTCAAGAAAACCAGAAAAGCCA 59.868 43.478 0.00 0.00 36.75 4.75
338 339 3.132111 TGGTCAAGAAAACCAGAAAAGCC 59.868 43.478 0.00 0.00 41.84 4.35
339 340 4.385358 TGGTCAAGAAAACCAGAAAAGC 57.615 40.909 0.00 0.00 41.84 3.51
346 347 7.654022 AATTAAGAACTGGTCAAGAAAACCA 57.346 32.000 0.00 0.00 44.46 3.67
347 348 8.817100 CAAAATTAAGAACTGGTCAAGAAAACC 58.183 33.333 0.00 0.00 37.31 3.27
348 349 9.366216 ACAAAATTAAGAACTGGTCAAGAAAAC 57.634 29.630 0.00 0.00 0.00 2.43
351 352 9.403583 ACTACAAAATTAAGAACTGGTCAAGAA 57.596 29.630 0.00 0.00 0.00 2.52
352 353 8.974060 ACTACAAAATTAAGAACTGGTCAAGA 57.026 30.769 0.00 0.00 0.00 3.02
370 371 9.849166 CTGAAGAACAAACCTAAAAACTACAAA 57.151 29.630 0.00 0.00 0.00 2.83
371 372 9.016438 ACTGAAGAACAAACCTAAAAACTACAA 57.984 29.630 0.00 0.00 0.00 2.41
372 373 8.570068 ACTGAAGAACAAACCTAAAAACTACA 57.430 30.769 0.00 0.00 0.00 2.74
373 374 9.499585 GAACTGAAGAACAAACCTAAAAACTAC 57.500 33.333 0.00 0.00 0.00 2.73
374 375 8.392612 CGAACTGAAGAACAAACCTAAAAACTA 58.607 33.333 0.00 0.00 0.00 2.24
375 376 7.248437 CGAACTGAAGAACAAACCTAAAAACT 58.752 34.615 0.00 0.00 0.00 2.66
376 377 6.471198 CCGAACTGAAGAACAAACCTAAAAAC 59.529 38.462 0.00 0.00 0.00 2.43
377 378 6.151480 ACCGAACTGAAGAACAAACCTAAAAA 59.849 34.615 0.00 0.00 0.00 1.94
378 379 5.648960 ACCGAACTGAAGAACAAACCTAAAA 59.351 36.000 0.00 0.00 0.00 1.52
379 380 5.187687 ACCGAACTGAAGAACAAACCTAAA 58.812 37.500 0.00 0.00 0.00 1.85
380 381 4.773013 ACCGAACTGAAGAACAAACCTAA 58.227 39.130 0.00 0.00 0.00 2.69
381 382 4.411256 ACCGAACTGAAGAACAAACCTA 57.589 40.909 0.00 0.00 0.00 3.08
382 383 3.277142 ACCGAACTGAAGAACAAACCT 57.723 42.857 0.00 0.00 0.00 3.50
383 384 4.365899 AAACCGAACTGAAGAACAAACC 57.634 40.909 0.00 0.00 0.00 3.27
384 385 5.637809 AGAAAACCGAACTGAAGAACAAAC 58.362 37.500 0.00 0.00 0.00 2.93
385 386 5.890424 AGAAAACCGAACTGAAGAACAAA 57.110 34.783 0.00 0.00 0.00 2.83
386 387 5.890424 AAGAAAACCGAACTGAAGAACAA 57.110 34.783 0.00 0.00 0.00 2.83
387 388 5.890424 AAAGAAAACCGAACTGAAGAACA 57.110 34.783 0.00 0.00 0.00 3.18
388 389 6.319399 TGAAAAGAAAACCGAACTGAAGAAC 58.681 36.000 0.00 0.00 0.00 3.01
389 390 6.503589 TGAAAAGAAAACCGAACTGAAGAA 57.496 33.333 0.00 0.00 0.00 2.52
390 391 6.693315 ATGAAAAGAAAACCGAACTGAAGA 57.307 33.333 0.00 0.00 0.00 2.87
391 392 7.755582 AAATGAAAAGAAAACCGAACTGAAG 57.244 32.000 0.00 0.00 0.00 3.02
392 393 7.412455 GCAAAATGAAAAGAAAACCGAACTGAA 60.412 33.333 0.00 0.00 0.00 3.02
393 394 6.035542 GCAAAATGAAAAGAAAACCGAACTGA 59.964 34.615 0.00 0.00 0.00 3.41
394 395 6.035975 AGCAAAATGAAAAGAAAACCGAACTG 59.964 34.615 0.00 0.00 0.00 3.16
395 396 6.106003 AGCAAAATGAAAAGAAAACCGAACT 58.894 32.000 0.00 0.00 0.00 3.01
396 397 6.344572 AGCAAAATGAAAAGAAAACCGAAC 57.655 33.333 0.00 0.00 0.00 3.95
397 398 6.976636 AAGCAAAATGAAAAGAAAACCGAA 57.023 29.167 0.00 0.00 0.00 4.30
398 399 6.816140 AGAAAGCAAAATGAAAAGAAAACCGA 59.184 30.769 0.00 0.00 0.00 4.69
399 400 7.003939 AGAAAGCAAAATGAAAAGAAAACCG 57.996 32.000 0.00 0.00 0.00 4.44
400 401 8.668353 AGAAGAAAGCAAAATGAAAAGAAAACC 58.332 29.630 0.00 0.00 0.00 3.27
541 542 6.985059 TGCACAAATTCAAGAAATGTTCATGA 59.015 30.769 0.00 0.00 35.79 3.07
542 543 7.179927 TGCACAAATTCAAGAAATGTTCATG 57.820 32.000 2.93 0.00 0.00 3.07
543 544 7.789273 TTGCACAAATTCAAGAAATGTTCAT 57.211 28.000 0.00 0.00 0.00 2.57
544 545 7.606858 TTTGCACAAATTCAAGAAATGTTCA 57.393 28.000 0.00 2.55 0.00 3.18
545 546 7.961827 TGTTTTGCACAAATTCAAGAAATGTTC 59.038 29.630 0.00 0.46 29.87 3.18
546 547 7.814642 TGTTTTGCACAAATTCAAGAAATGTT 58.185 26.923 0.00 0.00 29.87 2.71
547 548 7.375106 TGTTTTGCACAAATTCAAGAAATGT 57.625 28.000 0.00 0.48 29.87 2.71
548 549 8.844441 AATGTTTTGCACAAATTCAAGAAATG 57.156 26.923 0.00 0.00 39.50 2.32
560 561 9.713740 GTTCATGAATTTTAATGTTTTGCACAA 57.286 25.926 12.12 0.00 39.50 3.33
561 562 8.886719 TGTTCATGAATTTTAATGTTTTGCACA 58.113 25.926 12.12 0.00 40.71 4.57
562 563 9.881529 ATGTTCATGAATTTTAATGTTTTGCAC 57.118 25.926 12.12 0.00 0.00 4.57
668 669 0.181114 AAATGGGAGCTGCTATCGCA 59.819 50.000 4.16 6.63 45.60 5.10
669 670 0.590195 CAAATGGGAGCTGCTATCGC 59.410 55.000 4.16 0.00 0.00 4.58
670 671 0.590195 GCAAATGGGAGCTGCTATCG 59.410 55.000 4.16 0.61 33.20 2.92
671 672 0.957362 GGCAAATGGGAGCTGCTATC 59.043 55.000 4.16 0.00 36.32 2.08
672 673 0.259647 TGGCAAATGGGAGCTGCTAT 59.740 50.000 0.15 0.42 36.32 2.97
673 674 0.680921 GTGGCAAATGGGAGCTGCTA 60.681 55.000 0.15 0.00 36.32 3.49
674 675 1.980772 GTGGCAAATGGGAGCTGCT 60.981 57.895 0.00 0.00 36.32 4.24
675 676 2.575461 GTGGCAAATGGGAGCTGC 59.425 61.111 0.00 0.00 35.28 5.25
676 677 0.034186 TAGGTGGCAAATGGGAGCTG 60.034 55.000 0.00 0.00 0.00 4.24
677 678 0.034089 GTAGGTGGCAAATGGGAGCT 60.034 55.000 0.00 0.00 0.00 4.09
678 679 0.323360 TGTAGGTGGCAAATGGGAGC 60.323 55.000 0.00 0.00 0.00 4.70
679 680 1.683011 CCTGTAGGTGGCAAATGGGAG 60.683 57.143 0.00 0.00 0.00 4.30
680 681 0.331278 CCTGTAGGTGGCAAATGGGA 59.669 55.000 0.00 0.00 0.00 4.37
681 682 2.886382 CCTGTAGGTGGCAAATGGG 58.114 57.895 0.00 0.00 0.00 4.00
690 691 3.462184 CCTACGTGACGCCTGTAGGTG 62.462 61.905 4.25 9.84 46.56 4.00
691 692 1.310933 CCTACGTGACGCCTGTAGGT 61.311 60.000 4.25 0.00 46.56 3.08
692 693 1.432251 CCTACGTGACGCCTGTAGG 59.568 63.158 4.25 4.85 46.57 3.18
693 694 0.377554 CTCCTACGTGACGCCTGTAG 59.622 60.000 4.25 0.00 36.26 2.74
694 695 1.028330 CCTCCTACGTGACGCCTGTA 61.028 60.000 4.25 0.00 0.00 2.74
695 696 2.341101 CCTCCTACGTGACGCCTGT 61.341 63.158 4.25 0.00 0.00 4.00
696 697 2.267681 GACCTCCTACGTGACGCCTG 62.268 65.000 4.25 0.00 0.00 4.85
697 698 2.035312 ACCTCCTACGTGACGCCT 59.965 61.111 4.25 0.00 0.00 5.52
698 699 1.593296 AAGACCTCCTACGTGACGCC 61.593 60.000 4.25 0.00 0.00 5.68
699 700 0.456312 CAAGACCTCCTACGTGACGC 60.456 60.000 4.25 0.00 0.00 5.19
700 701 0.879765 ACAAGACCTCCTACGTGACG 59.120 55.000 2.24 2.24 0.00 4.35
701 702 1.884579 TGACAAGACCTCCTACGTGAC 59.115 52.381 0.00 0.00 0.00 3.67
702 703 1.884579 GTGACAAGACCTCCTACGTGA 59.115 52.381 0.00 0.00 0.00 4.35
703 704 1.067776 GGTGACAAGACCTCCTACGTG 60.068 57.143 0.00 0.00 32.69 4.49
704 705 1.203025 AGGTGACAAGACCTCCTACGT 60.203 52.381 0.00 0.00 43.33 3.57
705 706 1.546961 AGGTGACAAGACCTCCTACG 58.453 55.000 0.00 0.00 43.33 3.51
706 707 5.678955 ATAAAGGTGACAAGACCTCCTAC 57.321 43.478 0.00 0.00 46.29 3.18
707 708 7.801893 TTAATAAAGGTGACAAGACCTCCTA 57.198 36.000 0.00 0.00 46.29 2.94
708 709 6.697641 TTAATAAAGGTGACAAGACCTCCT 57.302 37.500 0.00 0.00 46.29 3.69
709 710 7.110155 TCATTAATAAAGGTGACAAGACCTCC 58.890 38.462 0.00 0.00 46.29 4.30
710 711 8.041323 TCTCATTAATAAAGGTGACAAGACCTC 58.959 37.037 0.00 0.00 46.29 3.85
712 713 7.201652 GCTCTCATTAATAAAGGTGACAAGACC 60.202 40.741 0.00 0.00 36.09 3.85
713 714 7.550906 AGCTCTCATTAATAAAGGTGACAAGAC 59.449 37.037 0.00 0.00 0.00 3.01
714 715 7.624549 AGCTCTCATTAATAAAGGTGACAAGA 58.375 34.615 0.00 0.00 0.00 3.02
715 716 7.856145 AGCTCTCATTAATAAAGGTGACAAG 57.144 36.000 0.00 0.00 0.00 3.16
716 717 9.733556 TTTAGCTCTCATTAATAAAGGTGACAA 57.266 29.630 0.00 0.00 0.00 3.18
717 718 9.733556 TTTTAGCTCTCATTAATAAAGGTGACA 57.266 29.630 0.00 0.00 0.00 3.58
721 722 9.190317 CCCTTTTTAGCTCTCATTAATAAAGGT 57.810 33.333 14.85 9.10 38.13 3.50
722 723 8.633561 CCCCTTTTTAGCTCTCATTAATAAAGG 58.366 37.037 11.30 11.30 39.03 3.11
723 724 9.190317 ACCCCTTTTTAGCTCTCATTAATAAAG 57.810 33.333 0.00 0.00 0.00 1.85
724 725 9.541884 AACCCCTTTTTAGCTCTCATTAATAAA 57.458 29.630 0.00 0.00 0.00 1.40
726 727 9.847224 CTAACCCCTTTTTAGCTCTCATTAATA 57.153 33.333 0.00 0.00 0.00 0.98
727 728 7.780271 CCTAACCCCTTTTTAGCTCTCATTAAT 59.220 37.037 0.00 0.00 0.00 1.40
728 729 7.116736 CCTAACCCCTTTTTAGCTCTCATTAA 58.883 38.462 0.00 0.00 0.00 1.40
729 730 6.353602 CCCTAACCCCTTTTTAGCTCTCATTA 60.354 42.308 0.00 0.00 0.00 1.90
730 731 5.510430 CCTAACCCCTTTTTAGCTCTCATT 58.490 41.667 0.00 0.00 0.00 2.57
731 732 4.079730 CCCTAACCCCTTTTTAGCTCTCAT 60.080 45.833 0.00 0.00 0.00 2.90
732 733 3.265995 CCCTAACCCCTTTTTAGCTCTCA 59.734 47.826 0.00 0.00 0.00 3.27
733 734 3.266254 ACCCTAACCCCTTTTTAGCTCTC 59.734 47.826 0.00 0.00 0.00 3.20
734 735 3.266374 ACCCTAACCCCTTTTTAGCTCT 58.734 45.455 0.00 0.00 0.00 4.09
735 736 3.733883 ACCCTAACCCCTTTTTAGCTC 57.266 47.619 0.00 0.00 0.00 4.09
736 737 4.480777 AAACCCTAACCCCTTTTTAGCT 57.519 40.909 0.00 0.00 0.00 3.32
737 738 4.708421 CCTAAACCCTAACCCCTTTTTAGC 59.292 45.833 0.00 0.00 0.00 3.09
738 739 5.222400 ACCCTAAACCCTAACCCCTTTTTAG 60.222 44.000 0.00 0.00 0.00 1.85
739 740 4.674097 ACCCTAAACCCTAACCCCTTTTTA 59.326 41.667 0.00 0.00 0.00 1.52
740 741 3.472076 ACCCTAAACCCTAACCCCTTTTT 59.528 43.478 0.00 0.00 0.00 1.94
741 742 3.073631 ACCCTAAACCCTAACCCCTTTT 58.926 45.455 0.00 0.00 0.00 2.27
742 743 2.734428 ACCCTAAACCCTAACCCCTTT 58.266 47.619 0.00 0.00 0.00 3.11
743 744 2.463671 ACCCTAAACCCTAACCCCTT 57.536 50.000 0.00 0.00 0.00 3.95
744 745 2.281966 GAACCCTAAACCCTAACCCCT 58.718 52.381 0.00 0.00 0.00 4.79
745 746 1.994794 TGAACCCTAAACCCTAACCCC 59.005 52.381 0.00 0.00 0.00 4.95
746 747 3.010920 ACATGAACCCTAAACCCTAACCC 59.989 47.826 0.00 0.00 0.00 4.11
747 748 4.311520 ACATGAACCCTAAACCCTAACC 57.688 45.455 0.00 0.00 0.00 2.85
748 749 6.376299 CCTAAACATGAACCCTAAACCCTAAC 59.624 42.308 0.00 0.00 0.00 2.34
749 750 6.045813 ACCTAAACATGAACCCTAAACCCTAA 59.954 38.462 0.00 0.00 0.00 2.69
750 751 5.552766 ACCTAAACATGAACCCTAAACCCTA 59.447 40.000 0.00 0.00 0.00 3.53
751 752 4.355889 ACCTAAACATGAACCCTAAACCCT 59.644 41.667 0.00 0.00 0.00 4.34
752 753 4.669700 ACCTAAACATGAACCCTAAACCC 58.330 43.478 0.00 0.00 0.00 4.11
753 754 6.265876 TGAAACCTAAACATGAACCCTAAACC 59.734 38.462 0.00 0.00 0.00 3.27
754 755 7.279750 TGAAACCTAAACATGAACCCTAAAC 57.720 36.000 0.00 0.00 0.00 2.01
755 756 6.492087 CCTGAAACCTAAACATGAACCCTAAA 59.508 38.462 0.00 0.00 0.00 1.85
756 757 6.007703 CCTGAAACCTAAACATGAACCCTAA 58.992 40.000 0.00 0.00 0.00 2.69
757 758 5.515886 CCCTGAAACCTAAACATGAACCCTA 60.516 44.000 0.00 0.00 0.00 3.53
758 759 4.407365 CCTGAAACCTAAACATGAACCCT 58.593 43.478 0.00 0.00 0.00 4.34
759 760 3.509967 CCCTGAAACCTAAACATGAACCC 59.490 47.826 0.00 0.00 0.00 4.11
760 761 4.149598 ACCCTGAAACCTAAACATGAACC 58.850 43.478 0.00 0.00 0.00 3.62
761 762 4.083484 CGACCCTGAAACCTAAACATGAAC 60.083 45.833 0.00 0.00 0.00 3.18
762 763 4.069304 CGACCCTGAAACCTAAACATGAA 58.931 43.478 0.00 0.00 0.00 2.57
763 764 3.670625 CGACCCTGAAACCTAAACATGA 58.329 45.455 0.00 0.00 0.00 3.07
764 765 2.161609 GCGACCCTGAAACCTAAACATG 59.838 50.000 0.00 0.00 0.00 3.21
765 766 2.433436 GCGACCCTGAAACCTAAACAT 58.567 47.619 0.00 0.00 0.00 2.71
766 767 1.874739 CGCGACCCTGAAACCTAAACA 60.875 52.381 0.00 0.00 0.00 2.83
767 768 0.794473 CGCGACCCTGAAACCTAAAC 59.206 55.000 0.00 0.00 0.00 2.01
768 769 0.320946 CCGCGACCCTGAAACCTAAA 60.321 55.000 8.23 0.00 0.00 1.85
769 770 1.294138 CCGCGACCCTGAAACCTAA 59.706 57.895 8.23 0.00 0.00 2.69
770 771 2.975536 CCGCGACCCTGAAACCTA 59.024 61.111 8.23 0.00 0.00 3.08
771 772 4.699522 GCCGCGACCCTGAAACCT 62.700 66.667 8.23 0.00 0.00 3.50
772 773 3.305177 TAGCCGCGACCCTGAAACC 62.305 63.158 8.23 0.00 0.00 3.27
773 774 1.810030 CTAGCCGCGACCCTGAAAC 60.810 63.158 8.23 0.00 0.00 2.78
774 775 2.577059 CTAGCCGCGACCCTGAAA 59.423 61.111 8.23 0.00 0.00 2.69
775 776 3.458163 CCTAGCCGCGACCCTGAA 61.458 66.667 8.23 0.00 0.00 3.02
779 780 3.617143 AAAACCCTAGCCGCGACCC 62.617 63.158 8.23 0.00 0.00 4.46
780 781 2.046604 AAAACCCTAGCCGCGACC 60.047 61.111 8.23 0.00 0.00 4.79
781 782 1.079336 AGAAAACCCTAGCCGCGAC 60.079 57.895 8.23 0.00 0.00 5.19
782 783 1.217244 GAGAAAACCCTAGCCGCGA 59.783 57.895 8.23 0.00 0.00 5.87
799 800 2.428491 GATTAGATCGCTCGGAGGAGA 58.572 52.381 7.20 0.00 43.27 3.71
834 836 1.865340 GAGGACGAGTTTGTGTTGGAC 59.135 52.381 0.00 0.00 0.00 4.02
849 851 1.177401 GTTTGATTGCCAGGGAGGAC 58.823 55.000 0.00 0.00 41.22 3.85
887 890 1.542915 CGACGGGAGAGGTTTTGTAGA 59.457 52.381 0.00 0.00 0.00 2.59
913 918 1.303643 GGGACAAGACAGGCCCAAG 60.304 63.158 0.00 0.00 40.39 3.61
1107 1113 1.147153 CCTAGCTAGGGCAAGCCAC 59.853 63.158 29.47 2.47 43.86 5.01
1234 1240 1.270907 AGACAGGAGGCTTGAACGAT 58.729 50.000 0.00 0.00 0.00 3.73
1297 1303 3.622612 CACATCAACACGAGCATATTCCA 59.377 43.478 0.00 0.00 0.00 3.53
1338 1344 2.942604 TAGGTACCTCCTCTGCCTTT 57.057 50.000 20.32 0.00 44.42 3.11
1399 1405 6.019318 CACAATCTTCTCTTGCAAAAACCTTG 60.019 38.462 0.00 1.91 0.00 3.61
1445 1452 3.645687 GCCTCATCTCCAAGATCTTACCT 59.354 47.826 7.86 0.00 31.32 3.08
1469 1476 5.548181 AATCCCCTCTAGTATTTCCGTTC 57.452 43.478 0.00 0.00 0.00 3.95
1494 1501 3.513912 TCATGGCGTATTCTTATCCCGAT 59.486 43.478 0.00 0.00 0.00 4.18
1497 1504 4.002906 TGTCATGGCGTATTCTTATCCC 57.997 45.455 0.00 0.00 0.00 3.85
1609 1616 0.250467 AATCAAGCCACAGACGCTGT 60.250 50.000 6.67 6.67 46.51 4.40
1625 1632 5.126061 ACATTCTTTGTACTCATGGCCAATC 59.874 40.000 10.96 0.00 36.57 2.67
1725 1733 1.681076 GCACCGGGTTTTCCTCCTA 59.319 57.895 6.32 0.00 40.46 2.94
1811 1822 5.403766 GCTTGTAGATGTGTCCAGAATATCG 59.596 44.000 0.00 0.00 0.00 2.92
1823 1834 2.787473 TTGAGGGGCTTGTAGATGTG 57.213 50.000 0.00 0.00 0.00 3.21
1827 1838 2.303022 CAGTCTTTGAGGGGCTTGTAGA 59.697 50.000 0.00 0.00 0.00 2.59
1849 1860 1.134401 CCACCTGCATGGAAGTACGAT 60.134 52.381 0.00 0.00 43.02 3.73
1875 1886 0.608308 GCTAACCTTTTCCTGGCCGT 60.608 55.000 0.00 0.00 0.00 5.68
1904 1915 0.398318 GCACCTCTTCAGGGTTCACT 59.602 55.000 0.00 0.00 45.53 3.41
1911 1922 1.073722 TGCCAAGCACCTCTTCAGG 59.926 57.895 0.00 0.00 46.87 3.86
1928 1939 0.035630 CCTCCTTTGCTCTCTGGGTG 60.036 60.000 0.00 0.00 0.00 4.61
1936 1947 3.623510 CGTAGGAAAATCCTCCTTTGCTC 59.376 47.826 1.36 0.00 45.66 4.26
1938 1949 2.097629 GCGTAGGAAAATCCTCCTTTGC 59.902 50.000 1.36 0.00 45.66 3.68
1950 1961 1.980036 ACCAAGGGTAAGCGTAGGAAA 59.020 47.619 0.00 0.00 32.11 3.13
2047 2060 1.799916 GCCGATTTTTCGCCCGTTG 60.800 57.895 0.00 0.00 0.00 4.10
2049 2062 3.795342 CGCCGATTTTTCGCCCGT 61.795 61.111 0.00 0.00 0.00 5.28
2057 2070 2.046285 CAAGGAGGCCGCCGATTTT 61.046 57.895 20.86 5.84 0.00 1.82
2089 2102 4.019792 ACATAACAGACTCATTGTGCCA 57.980 40.909 0.00 0.00 0.00 4.92
2185 2203 6.937465 AGGCTTGTCTAGTTTTAGAAAGGAAG 59.063 38.462 0.00 0.00 37.65 3.46
2191 2209 9.787435 TTATTTGAGGCTTGTCTAGTTTTAGAA 57.213 29.630 0.00 0.00 37.65 2.10
2195 2213 9.696917 CATTTTATTTGAGGCTTGTCTAGTTTT 57.303 29.630 0.00 0.00 0.00 2.43
2245 2263 2.035832 CACTCCCGCAAAACCTTTCATT 59.964 45.455 0.00 0.00 0.00 2.57
2407 2425 1.437573 CACTCTCGGCTCGCCATAA 59.562 57.895 8.87 0.00 35.37 1.90
2602 2620 4.292306 ACTCCACTAAAACCAAGATCCCAT 59.708 41.667 0.00 0.00 0.00 4.00
2604 2622 4.302559 ACTCCACTAAAACCAAGATCCC 57.697 45.455 0.00 0.00 0.00 3.85
2641 2659 5.376854 AATGAACGAATTCTTGAACAGGG 57.623 39.130 3.52 0.00 35.69 4.45
2642 2660 7.860373 TGTTAAATGAACGAATTCTTGAACAGG 59.140 33.333 3.52 0.00 41.35 4.00
2643 2661 8.781067 TGTTAAATGAACGAATTCTTGAACAG 57.219 30.769 3.52 0.00 41.35 3.16
2644 2662 9.232082 CTTGTTAAATGAACGAATTCTTGAACA 57.768 29.630 3.52 3.86 41.35 3.18
2645 2663 9.233232 ACTTGTTAAATGAACGAATTCTTGAAC 57.767 29.630 3.52 1.33 41.35 3.18
2646 2664 9.796120 AACTTGTTAAATGAACGAATTCTTGAA 57.204 25.926 3.52 0.00 41.35 2.69
2663 2681 8.238631 GGATTAATCCGCAAGTTAACTTGTTAA 58.761 33.333 36.38 31.15 44.56 2.01
2664 2682 7.754625 GGATTAATCCGCAAGTTAACTTGTTA 58.245 34.615 36.38 26.91 44.56 2.41
2665 2683 6.617879 GGATTAATCCGCAAGTTAACTTGTT 58.382 36.000 36.38 27.72 44.56 2.83
2666 2684 6.190954 GGATTAATCCGCAAGTTAACTTGT 57.809 37.500 36.38 24.39 44.56 3.16
2681 2699 6.872547 GGTGACCCTACGAATAAGGATTAATC 59.127 42.308 6.93 6.93 36.08 1.75
2682 2700 6.517864 CGGTGACCCTACGAATAAGGATTAAT 60.518 42.308 0.00 0.00 36.08 1.40
2683 2701 5.221303 CGGTGACCCTACGAATAAGGATTAA 60.221 44.000 0.00 0.00 36.08 1.40
2684 2702 4.279169 CGGTGACCCTACGAATAAGGATTA 59.721 45.833 0.00 0.00 36.08 1.75
2685 2703 3.069158 CGGTGACCCTACGAATAAGGATT 59.931 47.826 0.00 0.00 36.08 3.01
2686 2704 2.626743 CGGTGACCCTACGAATAAGGAT 59.373 50.000 0.00 0.00 36.08 3.24
2687 2705 2.026641 CGGTGACCCTACGAATAAGGA 58.973 52.381 0.00 0.00 36.08 3.36
2688 2706 2.026641 TCGGTGACCCTACGAATAAGG 58.973 52.381 0.00 0.00 33.21 2.69
2689 2707 2.686915 ACTCGGTGACCCTACGAATAAG 59.313 50.000 0.00 0.00 36.08 1.73
2690 2708 2.726821 ACTCGGTGACCCTACGAATAA 58.273 47.619 0.00 0.00 36.08 1.40
2691 2709 2.425143 ACTCGGTGACCCTACGAATA 57.575 50.000 0.00 0.00 36.08 1.75
2692 2710 2.295885 CTACTCGGTGACCCTACGAAT 58.704 52.381 0.00 0.00 36.08 3.34
2693 2711 1.742761 CTACTCGGTGACCCTACGAA 58.257 55.000 0.00 0.00 36.08 3.85
2694 2712 0.745845 GCTACTCGGTGACCCTACGA 60.746 60.000 0.00 0.00 35.14 3.43
2695 2713 1.722636 GGCTACTCGGTGACCCTACG 61.723 65.000 0.00 0.00 0.00 3.51
2696 2714 1.722636 CGGCTACTCGGTGACCCTAC 61.723 65.000 0.00 0.00 0.00 3.18
2697 2715 1.452651 CGGCTACTCGGTGACCCTA 60.453 63.158 0.00 0.00 0.00 3.53
2698 2716 2.754658 CGGCTACTCGGTGACCCT 60.755 66.667 0.00 0.00 0.00 4.34
2699 2717 2.753043 TCGGCTACTCGGTGACCC 60.753 66.667 0.00 0.00 0.00 4.46
2700 2718 0.745845 TAGTCGGCTACTCGGTGACC 60.746 60.000 0.00 0.00 39.80 4.02
2701 2719 1.089920 TTAGTCGGCTACTCGGTGAC 58.910 55.000 0.00 0.00 39.80 3.67
2702 2720 1.089920 GTTAGTCGGCTACTCGGTGA 58.910 55.000 0.00 0.00 39.80 4.02
2703 2721 0.100146 GGTTAGTCGGCTACTCGGTG 59.900 60.000 0.00 0.00 39.80 4.94
2704 2722 1.372087 CGGTTAGTCGGCTACTCGGT 61.372 60.000 0.00 0.00 39.80 4.69
2705 2723 1.091771 TCGGTTAGTCGGCTACTCGG 61.092 60.000 15.24 8.39 39.80 4.63
2706 2724 0.942962 ATCGGTTAGTCGGCTACTCG 59.057 55.000 10.77 10.77 39.80 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.