Multiple sequence alignment - TraesCS1A01G350600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G350600 chr1A 100.000 6080 0 0 1 6080 535329339 535323260 0.000000e+00 11228.0
1 TraesCS1A01G350600 chr1A 100.000 122 0 0 6363 6484 535322977 535322856 6.540000e-55 226.0
2 TraesCS1A01G350600 chr1B 92.358 5025 215 79 842 5747 595335837 595330863 0.000000e+00 6996.0
3 TraesCS1A01G350600 chr1B 88.660 97 10 1 6363 6458 560507444 560507540 4.110000e-22 117.0
4 TraesCS1A01G350600 chr1D 96.038 4089 116 30 1395 5471 439072051 439067997 0.000000e+00 6612.0
5 TraesCS1A01G350600 chr1D 89.014 801 72 13 2 794 247134146 247133354 0.000000e+00 977.0
6 TraesCS1A01G350600 chr1D 94.694 490 17 4 896 1383 439072579 439072097 0.000000e+00 752.0
7 TraesCS1A01G350600 chr1D 92.523 214 7 3 5549 5762 439067917 439067713 1.370000e-76 298.0
8 TraesCS1A01G350600 chr4A 91.147 802 52 12 1 795 252794597 252793808 0.000000e+00 1070.0
9 TraesCS1A01G350600 chr4A 98.000 50 1 0 795 844 729677309 729677358 3.220000e-13 87.9
10 TraesCS1A01G350600 chr6D 90.250 800 56 16 2 792 329073676 329074462 0.000000e+00 1026.0
11 TraesCS1A01G350600 chr6D 76.615 325 52 12 5770 6080 144115193 144115507 2.420000e-34 158.0
12 TraesCS1A01G350600 chr5A 89.737 799 61 12 2 794 705991296 705992079 0.000000e+00 1002.0
13 TraesCS1A01G350600 chr5A 89.206 806 69 16 1 794 670617783 670616984 0.000000e+00 990.0
14 TraesCS1A01G350600 chr5A 89.139 801 73 10 2 795 659176445 659177238 0.000000e+00 985.0
15 TraesCS1A01G350600 chr5A 92.727 110 8 0 5103 5212 694530702 694530811 6.730000e-35 159.0
16 TraesCS1A01G350600 chr5A 92.727 110 8 0 5103 5212 694551133 694551242 6.730000e-35 159.0
17 TraesCS1A01G350600 chr5A 92.727 110 8 0 5103 5212 694571504 694571613 6.730000e-35 159.0
18 TraesCS1A01G350600 chr3A 89.487 799 68 12 2 792 225413238 225414028 0.000000e+00 996.0
19 TraesCS1A01G350600 chr3A 89.254 791 69 13 10 794 77426498 77427278 0.000000e+00 976.0
20 TraesCS1A01G350600 chr3A 97.674 43 1 0 795 837 687646699 687646741 2.510000e-09 75.0
21 TraesCS1A01G350600 chr4D 90.130 770 63 13 11 775 429752981 429752220 0.000000e+00 989.0
22 TraesCS1A01G350600 chr7D 86.082 194 27 0 5887 6080 102670177 102669984 6.590000e-50 209.0
23 TraesCS1A01G350600 chr7D 93.860 114 5 2 6363 6475 102669903 102669791 3.110000e-38 171.0
24 TraesCS1A01G350600 chr7D 94.545 55 2 1 795 849 8818369 8818422 4.170000e-12 84.2
25 TraesCS1A01G350600 chr2D 88.136 118 12 2 6368 6484 582588168 582588052 8.770000e-29 139.0
26 TraesCS1A01G350600 chr3B 90.625 96 9 0 6363 6458 623652447 623652352 1.900000e-25 128.0
27 TraesCS1A01G350600 chr7B 87.850 107 10 3 6363 6468 18928791 18928687 8.830000e-24 122.0
28 TraesCS1A01G350600 chr6B 74.772 329 56 16 5767 6080 256904173 256904489 8.830000e-24 122.0
29 TraesCS1A01G350600 chr5B 89.691 97 9 1 6363 6458 41807581 41807485 8.830000e-24 122.0
30 TraesCS1A01G350600 chr3D 91.667 60 4 1 795 853 184638966 184639025 1.500000e-11 82.4
31 TraesCS1A01G350600 chr6A 95.556 45 2 0 795 839 551834105 551834149 9.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G350600 chr1A 535322856 535329339 6483 True 5727 11228 100.000000 1 6484 2 chr1A.!!$R1 6483
1 TraesCS1A01G350600 chr1B 595330863 595335837 4974 True 6996 6996 92.358000 842 5747 1 chr1B.!!$R1 4905
2 TraesCS1A01G350600 chr1D 439067713 439072579 4866 True 2554 6612 94.418333 896 5762 3 chr1D.!!$R2 4866
3 TraesCS1A01G350600 chr1D 247133354 247134146 792 True 977 977 89.014000 2 794 1 chr1D.!!$R1 792
4 TraesCS1A01G350600 chr4A 252793808 252794597 789 True 1070 1070 91.147000 1 795 1 chr4A.!!$R1 794
5 TraesCS1A01G350600 chr6D 329073676 329074462 786 False 1026 1026 90.250000 2 792 1 chr6D.!!$F2 790
6 TraesCS1A01G350600 chr5A 705991296 705992079 783 False 1002 1002 89.737000 2 794 1 chr5A.!!$F5 792
7 TraesCS1A01G350600 chr5A 670616984 670617783 799 True 990 990 89.206000 1 794 1 chr5A.!!$R1 793
8 TraesCS1A01G350600 chr5A 659176445 659177238 793 False 985 985 89.139000 2 795 1 chr5A.!!$F1 793
9 TraesCS1A01G350600 chr3A 225413238 225414028 790 False 996 996 89.487000 2 792 1 chr3A.!!$F2 790
10 TraesCS1A01G350600 chr3A 77426498 77427278 780 False 976 976 89.254000 10 794 1 chr3A.!!$F1 784
11 TraesCS1A01G350600 chr4D 429752220 429752981 761 True 989 989 90.130000 11 775 1 chr4D.!!$R1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 842 0.172803 ACTAGTTGCTCCCGCTTACG 59.827 55.000 0.00 0.0 36.97 3.18 F
1462 1564 0.249868 TGAGTGCACGAGGTGGAAAG 60.250 55.000 12.01 0.0 35.32 2.62 F
1610 1713 0.599728 CGTGTGGGCATTTTGGTTGG 60.600 55.000 0.00 0.0 0.00 3.77 F
2098 2225 1.532437 CTTGTTGCAGCGATTCTGACA 59.468 47.619 0.00 0.0 45.72 3.58 F
2979 3107 1.597302 CATCATGGAGAGGCCGCAG 60.597 63.158 9.88 0.0 40.66 5.18 F
4432 4567 2.490903 TCTGTCGCCTGTTTAGTAGTCC 59.509 50.000 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2510 1.234821 CTGGCCTACGTTTGAAAGCA 58.765 50.000 3.32 0.0 0.00 3.91 R
2563 2690 2.162681 GTAGCTGTGCCAGTCCAAAAT 58.837 47.619 0.00 0.0 33.43 1.82 R
2925 3053 4.712337 TGAGAAAGAGAGATTGGTAGACCC 59.288 45.833 0.00 0.0 34.29 4.46 R
3062 3190 6.098124 TGGAACTTCAAGGATTCACAAAACAT 59.902 34.615 0.00 0.0 0.00 2.71 R
4752 4887 1.176527 GAGCTGCATAAAACAGGGCA 58.823 50.000 1.02 0.0 35.62 5.36 R
6058 6262 0.029681 ATGGGTGGATAGTGGAGCCT 60.030 55.000 0.00 0.0 33.34 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 182 1.226547 CGCAAAAGCACAACCGTGT 60.227 52.632 0.00 0.00 45.50 4.49
312 324 1.947456 GGAAGCAAAACCGTGACTCTT 59.053 47.619 0.00 0.00 0.00 2.85
316 328 0.865769 CAAAACCGTGACTCTTCCGG 59.134 55.000 0.00 0.00 46.93 5.14
605 634 6.448369 TCCAAAATCTAAGAAAGACTGGGA 57.552 37.500 0.00 0.00 36.93 4.37
723 763 2.942879 GCGACACGTGGCAAATGA 59.057 55.556 23.63 0.00 34.31 2.57
728 768 1.601903 GACACGTGGCAAATGACTGAA 59.398 47.619 18.77 0.00 0.00 3.02
739 781 2.127232 GACTGAAAGCGCGCCAAC 60.127 61.111 30.33 19.16 37.60 3.77
768 810 2.258013 CGTTGCGAGGCTCCCAAAA 61.258 57.895 15.69 0.00 0.00 2.44
795 837 0.997196 CGTTAACTAGTTGCTCCCGC 59.003 55.000 18.56 0.16 0.00 6.13
796 838 1.403780 CGTTAACTAGTTGCTCCCGCT 60.404 52.381 18.56 0.00 36.97 5.52
797 839 2.696506 GTTAACTAGTTGCTCCCGCTT 58.303 47.619 18.56 0.00 36.97 4.68
798 840 3.674138 CGTTAACTAGTTGCTCCCGCTTA 60.674 47.826 18.56 0.00 36.97 3.09
799 841 2.381725 AACTAGTTGCTCCCGCTTAC 57.618 50.000 7.48 0.00 36.97 2.34
800 842 0.172803 ACTAGTTGCTCCCGCTTACG 59.827 55.000 0.00 0.00 36.97 3.18
813 855 3.270962 CGCTTACGGGAGAGAGTTATC 57.729 52.381 0.00 0.00 34.97 1.75
814 856 2.617308 CGCTTACGGGAGAGAGTTATCA 59.383 50.000 0.00 0.00 34.97 2.15
815 857 3.253677 CGCTTACGGGAGAGAGTTATCAT 59.746 47.826 0.00 0.00 34.97 2.45
816 858 4.614078 CGCTTACGGGAGAGAGTTATCATC 60.614 50.000 0.00 0.00 34.97 2.92
817 859 4.321378 GCTTACGGGAGAGAGTTATCATCC 60.321 50.000 0.00 0.00 34.41 3.51
818 860 2.231529 ACGGGAGAGAGTTATCATCCG 58.768 52.381 0.00 0.00 40.50 4.18
819 861 2.158652 ACGGGAGAGAGTTATCATCCGA 60.159 50.000 12.32 0.00 39.07 4.55
820 862 2.226912 CGGGAGAGAGTTATCATCCGAC 59.773 54.545 0.00 0.00 38.47 4.79
821 863 3.492337 GGGAGAGAGTTATCATCCGACT 58.508 50.000 0.00 0.00 35.44 4.18
822 864 3.892588 GGGAGAGAGTTATCATCCGACTT 59.107 47.826 0.00 0.00 35.44 3.01
823 865 5.071370 GGGAGAGAGTTATCATCCGACTTA 58.929 45.833 0.00 0.00 35.44 2.24
824 866 5.535406 GGGAGAGAGTTATCATCCGACTTAA 59.465 44.000 0.00 0.00 35.44 1.85
825 867 6.209788 GGGAGAGAGTTATCATCCGACTTAAT 59.790 42.308 0.00 0.00 35.44 1.40
826 868 7.256012 GGGAGAGAGTTATCATCCGACTTAATT 60.256 40.741 0.00 0.00 35.44 1.40
827 869 8.145122 GGAGAGAGTTATCATCCGACTTAATTT 58.855 37.037 0.00 0.00 0.00 1.82
832 874 9.845305 GAGTTATCATCCGACTTAATTTAAACG 57.155 33.333 0.00 7.82 0.00 3.60
833 875 9.374838 AGTTATCATCCGACTTAATTTAAACGT 57.625 29.630 0.00 0.00 0.00 3.99
834 876 9.977762 GTTATCATCCGACTTAATTTAAACGTT 57.022 29.630 0.00 0.00 0.00 3.99
837 879 8.938047 TCATCCGACTTAATTTAAACGTTTTC 57.062 30.769 20.19 6.92 0.00 2.29
838 880 8.016801 TCATCCGACTTAATTTAAACGTTTTCC 58.983 33.333 20.19 0.00 0.00 3.13
839 881 6.361899 TCCGACTTAATTTAAACGTTTTCCG 58.638 36.000 20.19 9.12 44.03 4.30
840 882 6.201806 TCCGACTTAATTTAAACGTTTTCCGA 59.798 34.615 20.19 5.56 40.70 4.55
841 883 6.850317 CCGACTTAATTTAAACGTTTTCCGAA 59.150 34.615 20.19 4.23 40.70 4.30
842 884 7.375544 CCGACTTAATTTAAACGTTTTCCGAAA 59.624 33.333 20.19 13.49 40.70 3.46
843 885 8.732227 CGACTTAATTTAAACGTTTTCCGAAAA 58.268 29.630 20.19 13.12 40.70 2.29
883 925 3.721625 GCTTTCGGGCCATCTTTTC 57.278 52.632 4.39 0.00 0.00 2.29
890 932 0.746659 GGGCCATCTTTTCCCATTCG 59.253 55.000 4.39 0.00 39.82 3.34
1209 1274 2.840102 CGCTCCCCTTCCGAGGAT 60.840 66.667 0.00 0.00 46.74 3.24
1220 1286 1.269012 TCCGAGGATGTAACCGGTTT 58.731 50.000 27.64 7.59 42.34 3.27
1227 1293 5.233689 CGAGGATGTAACCGGTTTCTAATTC 59.766 44.000 27.64 15.35 34.73 2.17
1317 1384 3.000727 CTCCTCGTGCTCGGTTAATTTT 58.999 45.455 8.49 0.00 37.69 1.82
1324 1391 6.101332 TCGTGCTCGGTTAATTTTGTACTAT 58.899 36.000 8.49 0.00 37.69 2.12
1333 1400 8.662141 CGGTTAATTTTGTACTATGTTGCTAGT 58.338 33.333 0.00 0.00 36.04 2.57
1354 1421 2.992593 TGCTGTTGTTTCACAGTACCA 58.007 42.857 2.95 0.00 45.31 3.25
1378 1445 1.478510 CTATCACTGCTTCCGGTCTGT 59.521 52.381 0.00 0.00 0.00 3.41
1440 1542 5.049267 GCCGTAGAGGTTTCATTTGTTGTAA 60.049 40.000 0.00 0.00 43.70 2.41
1446 1548 6.016777 AGAGGTTTCATTTGTTGTAAGCTGAG 60.017 38.462 0.00 0.00 41.64 3.35
1460 1562 1.367471 CTGAGTGCACGAGGTGGAA 59.633 57.895 12.01 0.00 35.32 3.53
1462 1564 0.249868 TGAGTGCACGAGGTGGAAAG 60.250 55.000 12.01 0.00 35.32 2.62
1464 1566 1.227853 GTGCACGAGGTGGAAAGGT 60.228 57.895 0.00 0.00 35.32 3.50
1494 1596 4.491676 GTTAATGCAGAGTTCGTGTAGGA 58.508 43.478 0.00 0.00 0.00 2.94
1497 1599 3.678056 TGCAGAGTTCGTGTAGGATTT 57.322 42.857 0.00 0.00 0.00 2.17
1500 1602 5.730550 TGCAGAGTTCGTGTAGGATTTAAT 58.269 37.500 0.00 0.00 0.00 1.40
1521 1623 9.819267 TTTAATTCTATTTTTGTGGGTTTTCGT 57.181 25.926 0.00 0.00 0.00 3.85
1522 1624 7.707774 AATTCTATTTTTGTGGGTTTTCGTG 57.292 32.000 0.00 0.00 0.00 4.35
1523 1625 5.838531 TCTATTTTTGTGGGTTTTCGTGT 57.161 34.783 0.00 0.00 0.00 4.49
1525 1627 7.330900 TCTATTTTTGTGGGTTTTCGTGTAA 57.669 32.000 0.00 0.00 0.00 2.41
1533 1635 7.513371 TGTGGGTTTTCGTGTAATAAATTCT 57.487 32.000 0.00 0.00 0.00 2.40
1553 1656 0.680618 CTGCCTGGTTTTGCAATCCA 59.319 50.000 18.52 18.52 36.98 3.41
1588 1691 2.036346 AGCAAAGCTTGATTTGTGGGTC 59.964 45.455 0.00 0.00 41.31 4.46
1610 1713 0.599728 CGTGTGGGCATTTTGGTTGG 60.600 55.000 0.00 0.00 0.00 3.77
1626 1729 2.017049 GTTGGATGGGTGTATGTGAGC 58.983 52.381 0.00 0.00 0.00 4.26
1630 1733 2.555199 GATGGGTGTATGTGAGCTCAC 58.445 52.381 35.04 35.04 46.59 3.51
1691 1798 7.768582 TGTATACACTTCTGTTTGATGGGTATG 59.231 37.037 0.08 0.00 44.25 2.39
1780 1900 3.059352 AGCGTCCTCTTGCTATGTTTT 57.941 42.857 0.00 0.00 40.28 2.43
1948 2068 9.995003 TGATATTTCACCAGCTGTTTTTATTTT 57.005 25.926 13.81 0.00 0.00 1.82
2098 2225 1.532437 CTTGTTGCAGCGATTCTGACA 59.468 47.619 0.00 0.00 45.72 3.58
2134 2261 2.028523 GTCGATTGTCGCTTCTGATGTG 59.971 50.000 0.00 0.00 40.21 3.21
2208 2335 6.220726 TGTCAGTTATCAGTGCTGCTATTA 57.779 37.500 0.00 0.00 0.00 0.98
2420 2547 4.396790 GGCCAGTTTCACCGTTGATTATTA 59.603 41.667 0.00 0.00 0.00 0.98
2421 2548 5.329493 GCCAGTTTCACCGTTGATTATTAC 58.671 41.667 0.00 0.00 0.00 1.89
2422 2549 5.123344 GCCAGTTTCACCGTTGATTATTACT 59.877 40.000 0.00 0.00 0.00 2.24
2504 2631 5.067544 AGACCTGTTCTAAGTACCTAATCGC 59.932 44.000 0.00 0.00 30.17 4.58
2506 2633 4.341520 CCTGTTCTAAGTACCTAATCGCCT 59.658 45.833 0.00 0.00 0.00 5.52
2924 3052 3.957497 AACTTAGTGTTTCCATGGCAACA 59.043 39.130 23.77 23.77 44.58 3.33
2925 3053 4.037923 AACTTAGTGTTTCCATGGCAACAG 59.962 41.667 27.32 18.48 43.88 3.16
2979 3107 1.597302 CATCATGGAGAGGCCGCAG 60.597 63.158 9.88 0.00 40.66 5.18
3062 3190 8.550585 TGAATGATGATATATGTATGAGGCCAA 58.449 33.333 5.01 0.00 0.00 4.52
3125 3253 7.979444 TCTACCTGTTCAAAGTTTTGGATAG 57.021 36.000 4.89 4.10 38.66 2.08
3544 3673 3.627123 AGAATGGCCAAAAAGTTGTTTGC 59.373 39.130 10.96 0.00 37.20 3.68
4254 4386 8.515414 GTTGATAACTTGCTGAAGGTTAGAATT 58.485 33.333 0.00 0.00 32.95 2.17
4394 4526 6.496565 TGATCAGGTTTGAAATTTACCATGGT 59.503 34.615 23.55 23.55 36.78 3.55
4429 4564 4.175787 ACTTCTGTCGCCTGTTTAGTAG 57.824 45.455 0.00 0.00 0.00 2.57
4431 4566 3.844577 TCTGTCGCCTGTTTAGTAGTC 57.155 47.619 0.00 0.00 0.00 2.59
4432 4567 2.490903 TCTGTCGCCTGTTTAGTAGTCC 59.509 50.000 0.00 0.00 0.00 3.85
4433 4568 2.492484 CTGTCGCCTGTTTAGTAGTCCT 59.508 50.000 0.00 0.00 0.00 3.85
4434 4569 2.490903 TGTCGCCTGTTTAGTAGTCCTC 59.509 50.000 0.00 0.00 0.00 3.71
4592 4727 5.143376 TCTCGGTAAAAGTTACTCCAAGG 57.857 43.478 0.00 0.00 0.00 3.61
4651 4786 3.687572 TTCTCGCACGATAGGAAGTAC 57.312 47.619 0.00 0.00 43.77 2.73
4752 4887 3.714144 ACTAGCAGTGATCTAACCAGGT 58.286 45.455 0.00 0.00 0.00 4.00
4828 4963 0.740868 ATCACCAGAACGACATGCCG 60.741 55.000 0.00 0.00 0.00 5.69
4894 5029 2.047655 GCCATCCACCACGACGAA 60.048 61.111 0.00 0.00 0.00 3.85
4976 5111 1.525077 GTCAACCACAACCAGCCGA 60.525 57.895 0.00 0.00 0.00 5.54
5055 5193 0.108774 GGTAAGACCTATGCCTGCCC 59.891 60.000 0.00 0.00 34.73 5.36
5130 5268 2.047151 CTTGCTTGTGCCGTCGTGTT 62.047 55.000 0.00 0.00 38.71 3.32
5247 5386 1.977293 AAGAGGCCGCCCTTGAGATC 61.977 60.000 5.55 0.00 43.12 2.75
5250 5389 0.691078 AGGCCGCCCTTGAGATCTTA 60.691 55.000 5.55 0.00 38.74 2.10
5253 5393 1.134371 GCCGCCCTTGAGATCTTAACT 60.134 52.381 0.00 0.00 0.00 2.24
5254 5394 2.681097 GCCGCCCTTGAGATCTTAACTT 60.681 50.000 0.00 0.00 0.00 2.66
5261 5401 4.394300 CCTTGAGATCTTAACTTGTGCCAG 59.606 45.833 0.00 0.00 0.00 4.85
5262 5402 3.338249 TGAGATCTTAACTTGTGCCAGC 58.662 45.455 0.00 0.00 0.00 4.85
5368 5511 7.940178 TGGCTATCATAGTAACGTGTATTTG 57.060 36.000 0.00 0.00 0.00 2.32
5471 5623 9.611284 TTGTTCTCTGAATGTTTTATCATTTCG 57.389 29.630 0.00 0.00 38.03 3.46
5475 5627 6.020984 TCTGAATGTTTTATCATTTCGCGTG 58.979 36.000 5.77 0.00 38.03 5.34
5476 5628 4.556912 TGAATGTTTTATCATTTCGCGTGC 59.443 37.500 5.77 0.00 38.03 5.34
5477 5629 2.500888 TGTTTTATCATTTCGCGTGCG 58.499 42.857 5.77 8.14 41.35 5.34
5478 5630 2.096169 TGTTTTATCATTTCGCGTGCGT 60.096 40.909 14.47 0.00 40.74 5.24
5480 5632 0.247497 TTATCATTTCGCGTGCGTGC 60.247 50.000 14.47 0.00 40.74 5.34
5498 5673 1.411246 TGCGGCCGTATCTTATTCTGT 59.589 47.619 28.70 0.00 0.00 3.41
5528 5704 0.108424 CTCGGGTTCTCAGGCAAGAG 60.108 60.000 1.01 1.01 36.97 2.85
5547 5751 2.664436 CGAACGAGGAAACCACGGC 61.664 63.158 11.56 3.50 35.48 5.68
5580 5784 1.067212 AGCGGCAAAGATAGTCTACGG 59.933 52.381 1.45 0.00 0.00 4.02
5633 5837 6.235664 TGTCCCGTTTTAAAGAAAGAGCTAT 58.764 36.000 0.00 0.00 0.00 2.97
5638 5842 7.333672 CCCGTTTTAAAGAAAGAGCTATGTACT 59.666 37.037 0.00 0.00 0.00 2.73
5648 5852 2.415168 GAGCTATGTACTTTTGCGTGCA 59.585 45.455 0.00 0.00 34.10 4.57
5671 5875 0.599204 ACGCGTCAGTCGGTTTCATT 60.599 50.000 5.58 0.00 40.26 2.57
5692 5896 4.120331 GCCCATGCCGCACTGTTC 62.120 66.667 0.00 0.00 0.00 3.18
5773 5977 2.740826 CGGCGACCGTGGTCAAAT 60.741 61.111 18.54 0.00 44.77 2.32
5774 5978 2.322081 CGGCGACCGTGGTCAAATT 61.322 57.895 18.54 0.00 44.77 1.82
5775 5979 1.847890 CGGCGACCGTGGTCAAATTT 61.848 55.000 18.54 0.00 44.77 1.82
5776 5980 0.386731 GGCGACCGTGGTCAAATTTG 60.387 55.000 18.54 12.15 44.77 2.32
5777 5981 0.386731 GCGACCGTGGTCAAATTTGG 60.387 55.000 17.90 3.47 44.77 3.28
5778 5982 0.948678 CGACCGTGGTCAAATTTGGT 59.051 50.000 17.90 6.83 44.77 3.67
5779 5983 1.334599 CGACCGTGGTCAAATTTGGTG 60.335 52.381 17.90 4.15 44.77 4.17
5780 5984 1.679153 GACCGTGGTCAAATTTGGTGT 59.321 47.619 17.90 6.60 44.02 4.16
5781 5985 2.100087 GACCGTGGTCAAATTTGGTGTT 59.900 45.455 17.90 0.00 44.02 3.32
5782 5986 2.100087 ACCGTGGTCAAATTTGGTGTTC 59.900 45.455 17.90 5.12 0.00 3.18
5783 5987 2.360801 CCGTGGTCAAATTTGGTGTTCT 59.639 45.455 17.90 0.00 0.00 3.01
5784 5988 3.371168 CGTGGTCAAATTTGGTGTTCTG 58.629 45.455 17.90 0.00 0.00 3.02
5785 5989 3.066064 CGTGGTCAAATTTGGTGTTCTGA 59.934 43.478 17.90 0.00 0.00 3.27
5786 5990 4.359706 GTGGTCAAATTTGGTGTTCTGAC 58.640 43.478 17.90 6.25 33.92 3.51
5787 5991 3.977427 GGTCAAATTTGGTGTTCTGACC 58.023 45.455 17.90 11.50 44.28 4.02
5788 5992 3.243737 GGTCAAATTTGGTGTTCTGACCC 60.244 47.826 17.90 0.00 44.61 4.46
5789 5993 2.962421 TCAAATTTGGTGTTCTGACCCC 59.038 45.455 17.90 0.00 34.79 4.95
5790 5994 1.616159 AATTTGGTGTTCTGACCCCG 58.384 50.000 0.00 0.00 34.79 5.73
5791 5995 0.476771 ATTTGGTGTTCTGACCCCGT 59.523 50.000 0.00 0.00 34.79 5.28
5792 5996 0.256464 TTTGGTGTTCTGACCCCGTT 59.744 50.000 0.00 0.00 34.79 4.44
5793 5997 0.464735 TTGGTGTTCTGACCCCGTTG 60.465 55.000 0.00 0.00 34.79 4.10
5794 5998 1.147600 GGTGTTCTGACCCCGTTGT 59.852 57.895 0.00 0.00 0.00 3.32
5795 5999 0.883370 GGTGTTCTGACCCCGTTGTC 60.883 60.000 0.00 0.00 35.77 3.18
5796 6000 0.179067 GTGTTCTGACCCCGTTGTCA 60.179 55.000 4.45 4.45 42.75 3.58
5797 6001 0.542333 TGTTCTGACCCCGTTGTCAA 59.458 50.000 5.85 0.00 44.19 3.18
5798 6002 1.065345 TGTTCTGACCCCGTTGTCAAA 60.065 47.619 5.85 2.07 44.19 2.69
5799 6003 1.332686 GTTCTGACCCCGTTGTCAAAC 59.667 52.381 5.85 8.73 44.19 2.93
5800 6004 0.834612 TCTGACCCCGTTGTCAAACT 59.165 50.000 5.85 0.00 44.19 2.66
5801 6005 1.210967 TCTGACCCCGTTGTCAAACTT 59.789 47.619 5.85 0.00 44.19 2.66
5802 6006 2.021457 CTGACCCCGTTGTCAAACTTT 58.979 47.619 5.85 0.00 44.19 2.66
5803 6007 3.118334 TCTGACCCCGTTGTCAAACTTTA 60.118 43.478 5.85 0.00 44.19 1.85
5804 6008 3.207778 TGACCCCGTTGTCAAACTTTAG 58.792 45.455 2.11 0.00 42.06 1.85
5805 6009 1.951602 ACCCCGTTGTCAAACTTTAGC 59.048 47.619 0.00 0.00 33.87 3.09
5806 6010 1.950909 CCCCGTTGTCAAACTTTAGCA 59.049 47.619 0.00 0.00 33.87 3.49
5807 6011 2.031157 CCCCGTTGTCAAACTTTAGCAG 60.031 50.000 0.00 0.00 33.87 4.24
5808 6012 2.875933 CCCGTTGTCAAACTTTAGCAGA 59.124 45.455 0.00 0.00 33.87 4.26
5809 6013 3.314080 CCCGTTGTCAAACTTTAGCAGAA 59.686 43.478 0.00 0.00 33.87 3.02
5810 6014 4.023193 CCCGTTGTCAAACTTTAGCAGAAT 60.023 41.667 0.00 0.00 33.87 2.40
5811 6015 5.147162 CCGTTGTCAAACTTTAGCAGAATC 58.853 41.667 0.00 0.00 33.87 2.52
5812 6016 5.049405 CCGTTGTCAAACTTTAGCAGAATCT 60.049 40.000 0.00 0.00 33.87 2.40
5813 6017 5.848036 CGTTGTCAAACTTTAGCAGAATCTG 59.152 40.000 5.78 5.78 33.87 2.90
5814 6018 6.292865 CGTTGTCAAACTTTAGCAGAATCTGA 60.293 38.462 15.38 0.00 33.87 3.27
5815 6019 6.545504 TGTCAAACTTTAGCAGAATCTGAC 57.454 37.500 15.38 5.53 32.44 3.51
5816 6020 5.470098 TGTCAAACTTTAGCAGAATCTGACC 59.530 40.000 15.38 0.00 32.44 4.02
5817 6021 5.003804 TCAAACTTTAGCAGAATCTGACCC 58.996 41.667 15.38 0.00 32.44 4.46
5818 6022 3.636153 ACTTTAGCAGAATCTGACCCC 57.364 47.619 15.38 0.00 32.44 4.95
5819 6023 2.093447 ACTTTAGCAGAATCTGACCCCG 60.093 50.000 15.38 1.36 32.44 5.73
5820 6024 0.830648 TTAGCAGAATCTGACCCCGG 59.169 55.000 15.38 0.00 32.44 5.73
5821 6025 0.325296 TAGCAGAATCTGACCCCGGT 60.325 55.000 15.38 0.00 32.44 5.28
5822 6026 1.201429 AGCAGAATCTGACCCCGGTT 61.201 55.000 15.38 0.00 32.44 4.44
5823 6027 1.026718 GCAGAATCTGACCCCGGTTG 61.027 60.000 15.38 0.00 32.44 3.77
5824 6028 1.026718 CAGAATCTGACCCCGGTTGC 61.027 60.000 3.77 0.00 32.44 4.17
5825 6029 1.002624 GAATCTGACCCCGGTTGCA 60.003 57.895 0.00 0.00 0.00 4.08
5826 6030 0.608035 GAATCTGACCCCGGTTGCAA 60.608 55.000 0.00 0.00 0.00 4.08
5827 6031 0.178975 AATCTGACCCCGGTTGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
5828 6032 0.178975 ATCTGACCCCGGTTGCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
5829 6033 0.395862 TCTGACCCCGGTTGCAAAAA 60.396 50.000 0.00 0.00 0.00 1.94
5863 6067 9.444600 AAAATTGGGATTTGATCATTTTCTCTG 57.555 29.630 0.00 0.00 35.69 3.35
5864 6068 5.587388 TGGGATTTGATCATTTTCTCTGC 57.413 39.130 0.00 0.00 0.00 4.26
5865 6069 4.403432 TGGGATTTGATCATTTTCTCTGCC 59.597 41.667 0.00 0.00 0.00 4.85
5866 6070 4.498682 GGGATTTGATCATTTTCTCTGCCG 60.499 45.833 0.00 0.00 0.00 5.69
5867 6071 3.492421 TTTGATCATTTTCTCTGCCGC 57.508 42.857 0.00 0.00 0.00 6.53
5868 6072 1.382522 TGATCATTTTCTCTGCCGCC 58.617 50.000 0.00 0.00 0.00 6.13
5869 6073 1.339920 TGATCATTTTCTCTGCCGCCA 60.340 47.619 0.00 0.00 0.00 5.69
5870 6074 1.952296 GATCATTTTCTCTGCCGCCAT 59.048 47.619 0.00 0.00 0.00 4.40
5871 6075 1.382522 TCATTTTCTCTGCCGCCATC 58.617 50.000 0.00 0.00 0.00 3.51
5872 6076 1.065199 TCATTTTCTCTGCCGCCATCT 60.065 47.619 0.00 0.00 0.00 2.90
5873 6077 1.065102 CATTTTCTCTGCCGCCATCTG 59.935 52.381 0.00 0.00 0.00 2.90
5874 6078 0.324614 TTTTCTCTGCCGCCATCTGA 59.675 50.000 0.00 0.00 0.00 3.27
5875 6079 0.391661 TTTCTCTGCCGCCATCTGAC 60.392 55.000 0.00 0.00 0.00 3.51
5876 6080 2.202987 CTCTGCCGCCATCTGACC 60.203 66.667 0.00 0.00 0.00 4.02
5877 6081 3.746949 CTCTGCCGCCATCTGACCC 62.747 68.421 0.00 0.00 0.00 4.46
5878 6082 4.100084 CTGCCGCCATCTGACCCA 62.100 66.667 0.00 0.00 0.00 4.51
5879 6083 4.100084 TGCCGCCATCTGACCCAG 62.100 66.667 0.00 0.00 0.00 4.45
5883 6087 2.507944 GCCATCTGACCCAGCGAT 59.492 61.111 0.00 0.00 0.00 4.58
5884 6088 1.748403 GCCATCTGACCCAGCGATA 59.252 57.895 0.00 0.00 0.00 2.92
5885 6089 0.320247 GCCATCTGACCCAGCGATAG 60.320 60.000 0.00 0.00 0.00 2.08
5886 6090 0.319728 CCATCTGACCCAGCGATAGG 59.680 60.000 0.00 0.00 0.00 2.57
5894 6098 1.338107 CCCAGCGATAGGGTATCACA 58.662 55.000 0.60 0.00 41.61 3.58
5895 6099 1.902508 CCCAGCGATAGGGTATCACAT 59.097 52.381 0.60 0.00 41.61 3.21
5896 6100 2.093973 CCCAGCGATAGGGTATCACATC 60.094 54.545 0.60 0.00 41.61 3.06
5897 6101 2.093973 CCAGCGATAGGGTATCACATCC 60.094 54.545 0.00 0.00 34.87 3.51
5898 6102 2.828520 CAGCGATAGGGTATCACATCCT 59.171 50.000 0.00 0.00 34.87 3.24
5899 6103 4.017126 CAGCGATAGGGTATCACATCCTA 58.983 47.826 0.00 0.00 37.53 2.94
5900 6104 4.017808 AGCGATAGGGTATCACATCCTAC 58.982 47.826 0.00 0.00 36.15 3.18
5901 6105 3.130693 GCGATAGGGTATCACATCCTACC 59.869 52.174 0.00 0.00 36.15 3.18
5902 6106 3.377485 CGATAGGGTATCACATCCTACCG 59.623 52.174 0.00 0.00 38.64 4.02
5903 6107 2.769602 AGGGTATCACATCCTACCGT 57.230 50.000 0.00 0.00 38.64 4.83
5904 6108 2.595238 AGGGTATCACATCCTACCGTC 58.405 52.381 0.00 0.00 38.64 4.79
5905 6109 2.091499 AGGGTATCACATCCTACCGTCA 60.091 50.000 0.00 0.00 38.64 4.35
5906 6110 2.035576 GGGTATCACATCCTACCGTCAC 59.964 54.545 0.00 0.00 38.64 3.67
5907 6111 2.691526 GGTATCACATCCTACCGTCACA 59.308 50.000 0.00 0.00 0.00 3.58
5908 6112 2.961526 ATCACATCCTACCGTCACAC 57.038 50.000 0.00 0.00 0.00 3.82
5909 6113 0.892755 TCACATCCTACCGTCACACC 59.107 55.000 0.00 0.00 0.00 4.16
5910 6114 0.108329 CACATCCTACCGTCACACCC 60.108 60.000 0.00 0.00 0.00 4.61
5911 6115 1.262640 ACATCCTACCGTCACACCCC 61.263 60.000 0.00 0.00 0.00 4.95
5912 6116 1.688187 ATCCTACCGTCACACCCCC 60.688 63.158 0.00 0.00 0.00 5.40
5913 6117 3.766691 CCTACCGTCACACCCCCG 61.767 72.222 0.00 0.00 0.00 5.73
5914 6118 3.766691 CTACCGTCACACCCCCGG 61.767 72.222 0.00 0.00 46.93 5.73
5920 6124 4.642488 TCACACCCCCGGGCAGTA 62.642 66.667 17.73 0.00 39.32 2.74
5921 6125 4.096003 CACACCCCCGGGCAGTAG 62.096 72.222 17.73 11.66 39.32 2.57
5927 6131 2.768344 CCCGGGCAGTAGGGTGAT 60.768 66.667 8.08 0.00 42.67 3.06
5928 6132 2.505982 CCGGGCAGTAGGGTGATG 59.494 66.667 0.00 0.00 0.00 3.07
5929 6133 2.505982 CGGGCAGTAGGGTGATGG 59.494 66.667 0.00 0.00 0.00 3.51
5930 6134 2.367202 CGGGCAGTAGGGTGATGGT 61.367 63.158 0.00 0.00 0.00 3.55
5931 6135 1.527370 GGGCAGTAGGGTGATGGTC 59.473 63.158 0.00 0.00 0.00 4.02
5932 6136 1.144057 GGCAGTAGGGTGATGGTCG 59.856 63.158 0.00 0.00 0.00 4.79
5933 6137 1.614241 GGCAGTAGGGTGATGGTCGT 61.614 60.000 0.00 0.00 0.00 4.34
5934 6138 0.249398 GCAGTAGGGTGATGGTCGTT 59.751 55.000 0.00 0.00 0.00 3.85
5935 6139 1.479323 GCAGTAGGGTGATGGTCGTTA 59.521 52.381 0.00 0.00 0.00 3.18
5936 6140 2.093869 GCAGTAGGGTGATGGTCGTTAA 60.094 50.000 0.00 0.00 0.00 2.01
5937 6141 3.518590 CAGTAGGGTGATGGTCGTTAAC 58.481 50.000 0.00 0.00 0.00 2.01
5938 6142 2.165030 AGTAGGGTGATGGTCGTTAACG 59.835 50.000 21.85 21.85 41.45 3.18
5939 6143 0.390735 AGGGTGATGGTCGTTAACGC 60.391 55.000 22.96 16.87 39.60 4.84
5940 6144 1.363885 GGGTGATGGTCGTTAACGCC 61.364 60.000 22.96 24.25 39.60 5.68
5941 6145 0.671163 GGTGATGGTCGTTAACGCCA 60.671 55.000 31.69 31.69 44.71 5.69
5942 6146 0.719465 GTGATGGTCGTTAACGCCAG 59.281 55.000 32.22 10.13 44.19 4.85
5943 6147 1.017177 TGATGGTCGTTAACGCCAGC 61.017 55.000 33.14 33.14 45.20 4.85
5944 6148 0.739813 GATGGTCGTTAACGCCAGCT 60.740 55.000 32.81 23.93 44.19 4.24
5945 6149 0.533491 ATGGTCGTTAACGCCAGCTA 59.467 50.000 32.22 18.96 44.19 3.32
5946 6150 0.317799 TGGTCGTTAACGCCAGCTAA 59.682 50.000 28.46 13.91 39.37 3.09
5947 6151 0.717784 GGTCGTTAACGCCAGCTAAC 59.282 55.000 26.19 16.95 39.60 2.34
5949 6153 0.039256 TCGTTAACGCCAGCTAACGT 60.039 50.000 22.96 11.42 46.47 3.99
5950 6154 0.092351 CGTTAACGCCAGCTAACGTG 59.908 55.000 16.05 0.71 43.44 4.49
5951 6155 0.441145 GTTAACGCCAGCTAACGTGG 59.559 55.000 13.27 0.00 42.68 4.94
5957 6161 1.875963 CCAGCTAACGTGGCAAAGG 59.124 57.895 14.64 9.86 0.00 3.11
5958 6162 1.586154 CCAGCTAACGTGGCAAAGGG 61.586 60.000 14.64 7.61 0.00 3.95
5959 6163 1.303317 AGCTAACGTGGCAAAGGGG 60.303 57.895 14.64 0.00 0.00 4.79
5960 6164 2.989881 GCTAACGTGGCAAAGGGGC 61.990 63.158 8.60 0.00 43.73 5.80
5976 6180 4.484872 GCCTACCGCCAAGGACCC 62.485 72.222 0.54 0.00 45.00 4.46
5977 6181 3.006728 CCTACCGCCAAGGACCCA 61.007 66.667 0.00 0.00 45.00 4.51
5978 6182 2.584608 CTACCGCCAAGGACCCAG 59.415 66.667 0.00 0.00 45.00 4.45
5979 6183 3.006728 TACCGCCAAGGACCCAGG 61.007 66.667 0.00 0.00 45.00 4.45
5990 6194 2.285069 ACCCAGGCGGTATGGTGA 60.285 61.111 0.00 0.00 45.97 4.02
5991 6195 1.692749 ACCCAGGCGGTATGGTGAT 60.693 57.895 0.00 0.00 45.97 3.06
5992 6196 1.071471 CCCAGGCGGTATGGTGATC 59.929 63.158 0.00 0.00 35.96 2.92
5993 6197 1.300931 CCAGGCGGTATGGTGATCG 60.301 63.158 0.00 0.00 32.85 3.69
5994 6198 1.739667 CAGGCGGTATGGTGATCGA 59.260 57.895 0.00 0.00 0.00 3.59
5995 6199 0.319040 CAGGCGGTATGGTGATCGAG 60.319 60.000 0.00 0.00 0.00 4.04
5996 6200 1.664965 GGCGGTATGGTGATCGAGC 60.665 63.158 0.00 0.00 0.00 5.03
5997 6201 1.664965 GCGGTATGGTGATCGAGCC 60.665 63.158 0.00 0.00 0.00 4.70
5998 6202 2.041976 CGGTATGGTGATCGAGCCT 58.958 57.895 0.00 0.00 0.00 4.58
5999 6203 1.244816 CGGTATGGTGATCGAGCCTA 58.755 55.000 0.00 0.00 0.00 3.93
6000 6204 1.068472 CGGTATGGTGATCGAGCCTAC 60.068 57.143 0.00 0.00 0.00 3.18
6001 6205 1.272769 GGTATGGTGATCGAGCCTACC 59.727 57.143 3.35 3.35 0.00 3.18
6002 6206 1.961394 GTATGGTGATCGAGCCTACCA 59.039 52.381 14.38 14.38 46.25 3.25
6003 6207 0.753262 ATGGTGATCGAGCCTACCAC 59.247 55.000 14.32 0.00 45.14 4.16
6004 6208 1.327690 TGGTGATCGAGCCTACCACC 61.328 60.000 8.66 4.58 45.47 4.61
6005 6209 1.327690 GGTGATCGAGCCTACCACCA 61.328 60.000 5.38 0.00 44.83 4.17
6006 6210 0.535335 GTGATCGAGCCTACCACCAA 59.465 55.000 0.00 0.00 0.00 3.67
6007 6211 0.824109 TGATCGAGCCTACCACCAAG 59.176 55.000 0.00 0.00 0.00 3.61
6008 6212 0.530870 GATCGAGCCTACCACCAAGC 60.531 60.000 0.00 0.00 0.00 4.01
6009 6213 1.264749 ATCGAGCCTACCACCAAGCA 61.265 55.000 0.00 0.00 0.00 3.91
6010 6214 1.221840 CGAGCCTACCACCAAGCAT 59.778 57.895 0.00 0.00 0.00 3.79
6011 6215 0.811616 CGAGCCTACCACCAAGCATC 60.812 60.000 0.00 0.00 0.00 3.91
6012 6216 0.464554 GAGCCTACCACCAAGCATCC 60.465 60.000 0.00 0.00 0.00 3.51
6013 6217 1.453928 GCCTACCACCAAGCATCCC 60.454 63.158 0.00 0.00 0.00 3.85
6014 6218 1.153168 CCTACCACCAAGCATCCCG 60.153 63.158 0.00 0.00 0.00 5.14
6015 6219 1.153168 CTACCACCAAGCATCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
6016 6220 3.338275 TACCACCAAGCATCCCGGC 62.338 63.158 0.00 0.00 0.00 6.13
6017 6221 4.738998 CCACCAAGCATCCCGGCA 62.739 66.667 0.00 0.00 35.83 5.69
6018 6222 3.136123 CACCAAGCATCCCGGCAG 61.136 66.667 0.00 0.00 35.83 4.85
6019 6223 3.650950 ACCAAGCATCCCGGCAGT 61.651 61.111 0.00 0.00 35.83 4.40
6020 6224 2.297895 ACCAAGCATCCCGGCAGTA 61.298 57.895 0.00 0.00 35.83 2.74
6021 6225 1.524621 CCAAGCATCCCGGCAGTAG 60.525 63.158 0.00 0.00 35.83 2.57
6022 6226 1.524621 CAAGCATCCCGGCAGTAGG 60.525 63.158 0.00 0.00 35.83 3.18
6023 6227 1.995626 AAGCATCCCGGCAGTAGGT 60.996 57.895 0.00 0.00 35.83 3.08
6024 6228 1.972660 AAGCATCCCGGCAGTAGGTC 61.973 60.000 0.00 0.00 35.83 3.85
6025 6229 2.435693 GCATCCCGGCAGTAGGTCT 61.436 63.158 0.00 0.00 0.00 3.85
6026 6230 1.443407 CATCCCGGCAGTAGGTCTG 59.557 63.158 0.00 0.00 46.12 3.51
6027 6231 1.001760 ATCCCGGCAGTAGGTCTGT 59.998 57.895 0.00 0.00 45.23 3.41
6028 6232 1.330655 ATCCCGGCAGTAGGTCTGTG 61.331 60.000 0.00 0.00 45.23 3.66
6029 6233 2.283529 CCCGGCAGTAGGTCTGTGT 61.284 63.158 0.00 0.00 45.23 3.72
6030 6234 0.968901 CCCGGCAGTAGGTCTGTGTA 60.969 60.000 0.00 0.00 45.23 2.90
6031 6235 0.456221 CCGGCAGTAGGTCTGTGTAG 59.544 60.000 0.00 0.00 45.23 2.74
6032 6236 1.174783 CGGCAGTAGGTCTGTGTAGT 58.825 55.000 0.00 0.00 45.23 2.73
6033 6237 1.135373 CGGCAGTAGGTCTGTGTAGTG 60.135 57.143 0.00 0.00 45.23 2.74
6034 6238 1.204941 GGCAGTAGGTCTGTGTAGTGG 59.795 57.143 0.00 0.00 45.23 4.00
6035 6239 2.168496 GCAGTAGGTCTGTGTAGTGGA 58.832 52.381 0.00 0.00 45.23 4.02
6036 6240 2.761208 GCAGTAGGTCTGTGTAGTGGAT 59.239 50.000 0.00 0.00 45.23 3.41
6037 6241 3.952323 GCAGTAGGTCTGTGTAGTGGATA 59.048 47.826 0.00 0.00 45.23 2.59
6038 6242 4.401519 GCAGTAGGTCTGTGTAGTGGATAA 59.598 45.833 0.00 0.00 45.23 1.75
6039 6243 5.450688 GCAGTAGGTCTGTGTAGTGGATAAG 60.451 48.000 0.00 0.00 45.23 1.73
6040 6244 5.067936 CAGTAGGTCTGTGTAGTGGATAAGG 59.932 48.000 0.00 0.00 39.17 2.69
6041 6245 4.062490 AGGTCTGTGTAGTGGATAAGGT 57.938 45.455 0.00 0.00 0.00 3.50
6042 6246 3.769844 AGGTCTGTGTAGTGGATAAGGTG 59.230 47.826 0.00 0.00 0.00 4.00
6043 6247 3.514309 GGTCTGTGTAGTGGATAAGGTGT 59.486 47.826 0.00 0.00 0.00 4.16
6044 6248 4.020485 GGTCTGTGTAGTGGATAAGGTGTT 60.020 45.833 0.00 0.00 0.00 3.32
6045 6249 4.929808 GTCTGTGTAGTGGATAAGGTGTTG 59.070 45.833 0.00 0.00 0.00 3.33
6046 6250 4.836175 TCTGTGTAGTGGATAAGGTGTTGA 59.164 41.667 0.00 0.00 0.00 3.18
6047 6251 5.047306 TCTGTGTAGTGGATAAGGTGTTGAG 60.047 44.000 0.00 0.00 0.00 3.02
6048 6252 4.020573 TGTGTAGTGGATAAGGTGTTGAGG 60.021 45.833 0.00 0.00 0.00 3.86
6049 6253 4.020485 GTGTAGTGGATAAGGTGTTGAGGT 60.020 45.833 0.00 0.00 0.00 3.85
6050 6254 3.703001 AGTGGATAAGGTGTTGAGGTG 57.297 47.619 0.00 0.00 0.00 4.00
6051 6255 3.248024 AGTGGATAAGGTGTTGAGGTGA 58.752 45.455 0.00 0.00 0.00 4.02
6052 6256 3.650942 AGTGGATAAGGTGTTGAGGTGAA 59.349 43.478 0.00 0.00 0.00 3.18
6053 6257 4.289672 AGTGGATAAGGTGTTGAGGTGAAT 59.710 41.667 0.00 0.00 0.00 2.57
6054 6258 4.396166 GTGGATAAGGTGTTGAGGTGAATG 59.604 45.833 0.00 0.00 0.00 2.67
6055 6259 3.947834 GGATAAGGTGTTGAGGTGAATGG 59.052 47.826 0.00 0.00 0.00 3.16
6056 6260 2.292828 AAGGTGTTGAGGTGAATGGG 57.707 50.000 0.00 0.00 0.00 4.00
6057 6261 1.149101 AGGTGTTGAGGTGAATGGGT 58.851 50.000 0.00 0.00 0.00 4.51
6058 6262 2.344592 AGGTGTTGAGGTGAATGGGTA 58.655 47.619 0.00 0.00 0.00 3.69
6059 6263 2.305927 AGGTGTTGAGGTGAATGGGTAG 59.694 50.000 0.00 0.00 0.00 3.18
6060 6264 2.618045 GGTGTTGAGGTGAATGGGTAGG 60.618 54.545 0.00 0.00 0.00 3.18
6061 6265 1.004277 TGTTGAGGTGAATGGGTAGGC 59.996 52.381 0.00 0.00 0.00 3.93
6062 6266 1.282157 GTTGAGGTGAATGGGTAGGCT 59.718 52.381 0.00 0.00 0.00 4.58
6063 6267 1.204146 TGAGGTGAATGGGTAGGCTC 58.796 55.000 0.00 0.00 0.00 4.70
6064 6268 0.470341 GAGGTGAATGGGTAGGCTCC 59.530 60.000 0.00 0.00 0.00 4.70
6065 6269 0.253160 AGGTGAATGGGTAGGCTCCA 60.253 55.000 0.00 0.00 38.82 3.86
6066 6270 0.107165 GGTGAATGGGTAGGCTCCAC 60.107 60.000 0.00 0.00 37.08 4.02
6067 6271 0.912486 GTGAATGGGTAGGCTCCACT 59.088 55.000 0.00 0.00 37.08 4.00
6068 6272 2.116238 GTGAATGGGTAGGCTCCACTA 58.884 52.381 0.00 0.00 37.08 2.74
6069 6273 2.706190 GTGAATGGGTAGGCTCCACTAT 59.294 50.000 0.00 0.00 37.08 2.12
6070 6274 2.972713 TGAATGGGTAGGCTCCACTATC 59.027 50.000 0.00 0.00 37.08 2.08
6071 6275 2.031495 ATGGGTAGGCTCCACTATCC 57.969 55.000 0.00 0.00 43.26 2.59
6072 6276 3.552594 GGGTAGGCTCCACTATCCA 57.447 57.895 0.00 0.00 42.63 3.41
6073 6277 1.049402 GGGTAGGCTCCACTATCCAC 58.951 60.000 0.00 0.00 42.63 4.02
6074 6278 1.049402 GGTAGGCTCCACTATCCACC 58.951 60.000 0.00 0.00 0.00 4.61
6075 6279 1.049402 GTAGGCTCCACTATCCACCC 58.951 60.000 0.00 0.00 0.00 4.61
6076 6280 0.639943 TAGGCTCCACTATCCACCCA 59.360 55.000 0.00 0.00 0.00 4.51
6077 6281 0.029681 AGGCTCCACTATCCACCCAT 60.030 55.000 0.00 0.00 0.00 4.00
6078 6282 0.846693 GGCTCCACTATCCACCCATT 59.153 55.000 0.00 0.00 0.00 3.16
6079 6283 1.202818 GGCTCCACTATCCACCCATTC 60.203 57.143 0.00 0.00 0.00 2.67
6384 6588 3.819564 TGATAGAGATTTGTCCGGTGG 57.180 47.619 0.00 0.00 0.00 4.61
6385 6589 3.371034 TGATAGAGATTTGTCCGGTGGA 58.629 45.455 0.00 0.00 0.00 4.02
6386 6590 3.967326 TGATAGAGATTTGTCCGGTGGAT 59.033 43.478 0.00 0.00 32.73 3.41
6387 6591 4.408921 TGATAGAGATTTGTCCGGTGGATT 59.591 41.667 0.00 0.00 32.73 3.01
6388 6592 3.721087 AGAGATTTGTCCGGTGGATTT 57.279 42.857 0.00 0.00 32.73 2.17
6389 6593 3.347216 AGAGATTTGTCCGGTGGATTTG 58.653 45.455 0.00 0.00 32.73 2.32
6390 6594 2.423538 GAGATTTGTCCGGTGGATTTGG 59.576 50.000 0.00 0.00 32.73 3.28
6391 6595 2.041081 AGATTTGTCCGGTGGATTTGGA 59.959 45.455 0.00 0.00 32.73 3.53
6392 6596 1.904287 TTTGTCCGGTGGATTTGGAG 58.096 50.000 0.00 0.00 32.73 3.86
6393 6597 0.608035 TTGTCCGGTGGATTTGGAGC 60.608 55.000 0.00 0.00 32.73 4.70
6394 6598 1.002624 GTCCGGTGGATTTGGAGCA 60.003 57.895 0.00 0.00 32.73 4.26
6395 6599 0.394352 GTCCGGTGGATTTGGAGCAT 60.394 55.000 0.00 0.00 32.73 3.79
6396 6600 0.331278 TCCGGTGGATTTGGAGCATT 59.669 50.000 0.00 0.00 0.00 3.56
6397 6601 1.185315 CCGGTGGATTTGGAGCATTT 58.815 50.000 0.00 0.00 0.00 2.32
6398 6602 1.135024 CCGGTGGATTTGGAGCATTTG 60.135 52.381 0.00 0.00 0.00 2.32
6399 6603 1.736696 CGGTGGATTTGGAGCATTTGC 60.737 52.381 0.00 0.00 42.49 3.68
6400 6604 1.275856 GGTGGATTTGGAGCATTTGCA 59.724 47.619 5.20 0.00 45.16 4.08
6401 6605 2.093341 GGTGGATTTGGAGCATTTGCAT 60.093 45.455 5.20 0.00 45.16 3.96
6402 6606 3.192466 GTGGATTTGGAGCATTTGCATC 58.808 45.455 5.20 0.00 45.16 3.91
6403 6607 2.832733 TGGATTTGGAGCATTTGCATCA 59.167 40.909 5.20 0.00 45.16 3.07
6404 6608 3.192466 GGATTTGGAGCATTTGCATCAC 58.808 45.455 5.20 0.00 45.16 3.06
6405 6609 2.747396 TTTGGAGCATTTGCATCACC 57.253 45.000 5.20 3.70 45.16 4.02
6406 6610 0.896923 TTGGAGCATTTGCATCACCC 59.103 50.000 5.20 0.00 45.16 4.61
6407 6611 0.251698 TGGAGCATTTGCATCACCCA 60.252 50.000 5.20 1.66 45.16 4.51
6408 6612 0.896923 GGAGCATTTGCATCACCCAA 59.103 50.000 5.20 0.00 45.16 4.12
6409 6613 1.134907 GGAGCATTTGCATCACCCAAG 60.135 52.381 5.20 0.00 45.16 3.61
6410 6614 0.248289 AGCATTTGCATCACCCAAGC 59.752 50.000 5.20 0.00 45.16 4.01
6411 6615 0.248289 GCATTTGCATCACCCAAGCT 59.752 50.000 0.00 0.00 41.59 3.74
6412 6616 1.477700 GCATTTGCATCACCCAAGCTA 59.522 47.619 0.00 0.00 41.59 3.32
6413 6617 2.736400 GCATTTGCATCACCCAAGCTAC 60.736 50.000 0.00 0.00 41.59 3.58
6414 6618 1.544724 TTTGCATCACCCAAGCTACC 58.455 50.000 0.00 0.00 0.00 3.18
6415 6619 0.698238 TTGCATCACCCAAGCTACCT 59.302 50.000 0.00 0.00 0.00 3.08
6416 6620 0.253044 TGCATCACCCAAGCTACCTC 59.747 55.000 0.00 0.00 0.00 3.85
6417 6621 0.543749 GCATCACCCAAGCTACCTCT 59.456 55.000 0.00 0.00 0.00 3.69
6418 6622 1.474143 GCATCACCCAAGCTACCTCTC 60.474 57.143 0.00 0.00 0.00 3.20
6419 6623 1.833630 CATCACCCAAGCTACCTCTCA 59.166 52.381 0.00 0.00 0.00 3.27
6420 6624 1.267121 TCACCCAAGCTACCTCTCAC 58.733 55.000 0.00 0.00 0.00 3.51
6421 6625 0.976641 CACCCAAGCTACCTCTCACA 59.023 55.000 0.00 0.00 0.00 3.58
6422 6626 0.977395 ACCCAAGCTACCTCTCACAC 59.023 55.000 0.00 0.00 0.00 3.82
6423 6627 0.250513 CCCAAGCTACCTCTCACACC 59.749 60.000 0.00 0.00 0.00 4.16
6424 6628 0.250513 CCAAGCTACCTCTCACACCC 59.749 60.000 0.00 0.00 0.00 4.61
6425 6629 0.250513 CAAGCTACCTCTCACACCCC 59.749 60.000 0.00 0.00 0.00 4.95
6426 6630 0.910088 AAGCTACCTCTCACACCCCC 60.910 60.000 0.00 0.00 0.00 5.40
6441 6645 3.550692 CCCCCTTCTTTTGGTTGGT 57.449 52.632 0.00 0.00 0.00 3.67
6442 6646 1.801242 CCCCCTTCTTTTGGTTGGTT 58.199 50.000 0.00 0.00 0.00 3.67
6443 6647 1.416030 CCCCCTTCTTTTGGTTGGTTG 59.584 52.381 0.00 0.00 0.00 3.77
6444 6648 1.416030 CCCCTTCTTTTGGTTGGTTGG 59.584 52.381 0.00 0.00 0.00 3.77
6445 6649 2.393646 CCCTTCTTTTGGTTGGTTGGA 58.606 47.619 0.00 0.00 0.00 3.53
6446 6650 2.769095 CCCTTCTTTTGGTTGGTTGGAA 59.231 45.455 0.00 0.00 0.00 3.53
6447 6651 3.390967 CCCTTCTTTTGGTTGGTTGGAAT 59.609 43.478 0.00 0.00 0.00 3.01
6448 6652 4.503123 CCCTTCTTTTGGTTGGTTGGAATC 60.503 45.833 0.00 0.00 0.00 2.52
6449 6653 4.100808 CCTTCTTTTGGTTGGTTGGAATCA 59.899 41.667 0.00 0.00 0.00 2.57
6450 6654 4.664150 TCTTTTGGTTGGTTGGAATCAC 57.336 40.909 0.00 0.00 0.00 3.06
6451 6655 3.386402 TCTTTTGGTTGGTTGGAATCACC 59.614 43.478 0.00 0.00 39.54 4.02
6452 6656 2.765689 TTGGTTGGTTGGAATCACCT 57.234 45.000 0.00 0.00 39.86 4.00
6453 6657 3.885976 TTGGTTGGTTGGAATCACCTA 57.114 42.857 0.00 0.00 39.86 3.08
6454 6658 4.396357 TTGGTTGGTTGGAATCACCTAT 57.604 40.909 0.00 0.00 39.86 2.57
6455 6659 4.396357 TGGTTGGTTGGAATCACCTATT 57.604 40.909 0.00 0.00 39.86 1.73
6456 6660 4.746466 TGGTTGGTTGGAATCACCTATTT 58.254 39.130 0.00 0.00 39.86 1.40
6457 6661 5.151454 TGGTTGGTTGGAATCACCTATTTT 58.849 37.500 0.00 0.00 39.86 1.82
6458 6662 5.604650 TGGTTGGTTGGAATCACCTATTTTT 59.395 36.000 0.00 0.00 39.86 1.94
6459 6663 6.782988 TGGTTGGTTGGAATCACCTATTTTTA 59.217 34.615 0.00 0.00 39.86 1.52
6460 6664 7.039363 TGGTTGGTTGGAATCACCTATTTTTAG 60.039 37.037 0.00 0.00 39.86 1.85
6461 6665 7.039293 GGTTGGTTGGAATCACCTATTTTTAGT 60.039 37.037 0.00 0.00 39.86 2.24
6462 6666 8.364894 GTTGGTTGGAATCACCTATTTTTAGTT 58.635 33.333 0.00 0.00 39.86 2.24
6463 6667 7.891561 TGGTTGGAATCACCTATTTTTAGTTG 58.108 34.615 0.00 0.00 39.86 3.16
6464 6668 6.811665 GGTTGGAATCACCTATTTTTAGTTGC 59.188 38.462 0.00 0.00 39.86 4.17
6465 6669 7.375053 GTTGGAATCACCTATTTTTAGTTGCA 58.625 34.615 0.00 0.00 39.86 4.08
6466 6670 7.716799 TGGAATCACCTATTTTTAGTTGCAT 57.283 32.000 0.00 0.00 39.86 3.96
6467 6671 8.133024 TGGAATCACCTATTTTTAGTTGCATT 57.867 30.769 0.00 0.00 39.86 3.56
6468 6672 8.034215 TGGAATCACCTATTTTTAGTTGCATTG 58.966 33.333 0.00 0.00 39.86 2.82
6469 6673 7.010460 GGAATCACCTATTTTTAGTTGCATTGC 59.990 37.037 0.46 0.46 35.41 3.56
6470 6674 6.588719 TCACCTATTTTTAGTTGCATTGCT 57.411 33.333 10.49 0.00 0.00 3.91
6471 6675 6.620678 TCACCTATTTTTAGTTGCATTGCTC 58.379 36.000 10.49 3.43 0.00 4.26
6472 6676 5.512788 CACCTATTTTTAGTTGCATTGCTCG 59.487 40.000 10.49 0.00 0.00 5.03
6473 6677 4.500477 CCTATTTTTAGTTGCATTGCTCGC 59.500 41.667 10.49 0.19 0.00 5.03
6474 6678 3.361794 TTTTTAGTTGCATTGCTCGCA 57.638 38.095 10.49 0.00 37.68 5.10
6475 6679 2.330231 TTTAGTTGCATTGCTCGCAC 57.670 45.000 10.49 1.89 39.59 5.34
6476 6680 0.165727 TTAGTTGCATTGCTCGCACG 59.834 50.000 10.49 0.00 39.59 5.34
6477 6681 0.669012 TAGTTGCATTGCTCGCACGA 60.669 50.000 10.49 0.00 39.59 4.35
6478 6682 1.135315 GTTGCATTGCTCGCACGAT 59.865 52.632 10.49 0.00 39.59 3.73
6479 6683 0.454957 GTTGCATTGCTCGCACGATT 60.455 50.000 10.49 0.00 39.59 3.34
6480 6684 0.454789 TTGCATTGCTCGCACGATTG 60.455 50.000 10.49 0.00 39.59 2.67
6481 6685 2.219562 GCATTGCTCGCACGATTGC 61.220 57.895 0.16 0.00 46.21 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 182 0.865769 GGTTTTGCTTTCGCGAGAGA 59.134 50.000 28.81 12.02 43.69 3.10
584 613 7.986085 TTCTCCCAGTCTTTCTTAGATTTTG 57.014 36.000 0.00 0.00 34.79 2.44
601 630 3.556999 TCGATGTTTTGGTTTTCTCCCA 58.443 40.909 0.00 0.00 0.00 4.37
723 763 2.591715 AGTTGGCGCGCTTTCAGT 60.592 55.556 32.29 12.18 0.00 3.41
739 781 3.197790 CGCAACGATCAGCCCCAG 61.198 66.667 0.00 0.00 0.00 4.45
768 810 2.864968 CAACTAGTTAACGAGCGCTCT 58.135 47.619 32.88 19.27 0.00 4.09
795 837 4.083217 CGGATGATAACTCTCTCCCGTAAG 60.083 50.000 0.00 0.00 0.00 2.34
796 838 3.819337 CGGATGATAACTCTCTCCCGTAA 59.181 47.826 0.00 0.00 0.00 3.18
797 839 3.072038 TCGGATGATAACTCTCTCCCGTA 59.928 47.826 0.00 0.00 34.64 4.02
798 840 2.158652 TCGGATGATAACTCTCTCCCGT 60.159 50.000 0.00 0.00 34.64 5.28
799 841 2.226912 GTCGGATGATAACTCTCTCCCG 59.773 54.545 0.00 0.00 34.46 5.14
800 842 3.492337 AGTCGGATGATAACTCTCTCCC 58.508 50.000 0.00 0.00 0.00 4.30
801 843 6.636562 TTAAGTCGGATGATAACTCTCTCC 57.363 41.667 0.00 0.00 0.00 3.71
806 848 9.845305 CGTTTAAATTAAGTCGGATGATAACTC 57.155 33.333 0.00 0.00 0.00 3.01
807 849 9.374838 ACGTTTAAATTAAGTCGGATGATAACT 57.625 29.630 13.46 0.00 0.00 2.24
808 850 9.977762 AACGTTTAAATTAAGTCGGATGATAAC 57.022 29.630 0.00 0.00 0.00 1.89
811 853 9.550811 GAAAACGTTTAAATTAAGTCGGATGAT 57.449 29.630 15.03 0.00 0.00 2.45
812 854 8.016801 GGAAAACGTTTAAATTAAGTCGGATGA 58.983 33.333 15.03 0.00 0.00 2.92
813 855 7.006742 CGGAAAACGTTTAAATTAAGTCGGATG 59.993 37.037 15.03 0.00 37.93 3.51
814 856 7.017055 CGGAAAACGTTTAAATTAAGTCGGAT 58.983 34.615 15.03 0.00 37.93 4.18
815 857 6.201806 TCGGAAAACGTTTAAATTAAGTCGGA 59.798 34.615 15.03 11.73 44.69 4.55
816 858 6.361899 TCGGAAAACGTTTAAATTAAGTCGG 58.638 36.000 15.03 9.68 44.69 4.79
817 859 7.819529 TTCGGAAAACGTTTAAATTAAGTCG 57.180 32.000 15.03 7.92 44.69 4.18
823 865 9.961266 CTTTCTTTTTCGGAAAACGTTTAAATT 57.039 25.926 15.03 0.00 44.69 1.82
824 866 9.356433 TCTTTCTTTTTCGGAAAACGTTTAAAT 57.644 25.926 15.03 0.00 44.69 1.40
825 867 8.739649 TCTTTCTTTTTCGGAAAACGTTTAAA 57.260 26.923 15.03 8.23 44.69 1.52
826 868 7.485595 CCTCTTTCTTTTTCGGAAAACGTTTAA 59.514 33.333 15.03 1.57 44.69 1.52
827 869 6.968335 CCTCTTTCTTTTTCGGAAAACGTTTA 59.032 34.615 15.03 0.00 44.69 2.01
828 870 5.803461 CCTCTTTCTTTTTCGGAAAACGTTT 59.197 36.000 15.06 7.96 44.69 3.60
829 871 5.337554 CCTCTTTCTTTTTCGGAAAACGTT 58.662 37.500 15.06 0.00 44.69 3.99
830 872 4.201980 CCCTCTTTCTTTTTCGGAAAACGT 60.202 41.667 15.06 0.00 44.69 3.99
831 873 4.287720 CCCTCTTTCTTTTTCGGAAAACG 58.712 43.478 15.06 13.45 46.11 3.60
832 874 4.340097 TCCCCTCTTTCTTTTTCGGAAAAC 59.660 41.667 15.06 0.00 33.17 2.43
833 875 4.538738 TCCCCTCTTTCTTTTTCGGAAAA 58.461 39.130 11.68 11.68 33.17 2.29
834 876 4.173290 TCCCCTCTTTCTTTTTCGGAAA 57.827 40.909 0.00 0.00 0.00 3.13
835 877 3.868619 TCCCCTCTTTCTTTTTCGGAA 57.131 42.857 0.00 0.00 0.00 4.30
836 878 3.483421 GTTCCCCTCTTTCTTTTTCGGA 58.517 45.455 0.00 0.00 0.00 4.55
837 879 2.557056 GGTTCCCCTCTTTCTTTTTCGG 59.443 50.000 0.00 0.00 0.00 4.30
838 880 2.225727 CGGTTCCCCTCTTTCTTTTTCG 59.774 50.000 0.00 0.00 0.00 3.46
839 881 3.483421 TCGGTTCCCCTCTTTCTTTTTC 58.517 45.455 0.00 0.00 0.00 2.29
840 882 3.588210 TCGGTTCCCCTCTTTCTTTTT 57.412 42.857 0.00 0.00 0.00 1.94
841 883 3.808834 ATCGGTTCCCCTCTTTCTTTT 57.191 42.857 0.00 0.00 0.00 2.27
842 884 4.324331 CCTTATCGGTTCCCCTCTTTCTTT 60.324 45.833 0.00 0.00 0.00 2.52
843 885 3.200165 CCTTATCGGTTCCCCTCTTTCTT 59.800 47.826 0.00 0.00 0.00 2.52
844 886 2.772515 CCTTATCGGTTCCCCTCTTTCT 59.227 50.000 0.00 0.00 0.00 2.52
845 887 2.745482 GCCTTATCGGTTCCCCTCTTTC 60.745 54.545 0.00 0.00 34.25 2.62
846 888 1.212195 GCCTTATCGGTTCCCCTCTTT 59.788 52.381 0.00 0.00 34.25 2.52
1085 1149 2.286127 GAAGGAGAGGTCGAAGGGCG 62.286 65.000 0.00 0.00 42.69 6.13
1209 1274 3.928375 GCGAGAATTAGAAACCGGTTACA 59.072 43.478 22.60 5.75 0.00 2.41
1220 1286 0.753262 GAGGGGCAGCGAGAATTAGA 59.247 55.000 0.00 0.00 0.00 2.10
1324 1391 4.674101 GTGAAACAACAGCAACTAGCAACA 60.674 41.667 0.00 0.00 41.45 3.33
1354 1421 2.688958 GACCGGAAGCAGTGATAGTAGT 59.311 50.000 9.46 0.00 0.00 2.73
1440 1542 2.341543 CACCTCGTGCACTCAGCT 59.658 61.111 16.19 0.00 45.94 4.24
1446 1548 0.818040 AACCTTTCCACCTCGTGCAC 60.818 55.000 6.82 6.82 31.34 4.57
1460 1562 4.406456 TCTGCATTAACCACATGAACCTT 58.594 39.130 0.00 0.00 0.00 3.50
1462 1564 3.758554 ACTCTGCATTAACCACATGAACC 59.241 43.478 0.00 0.00 0.00 3.62
1464 1566 4.154015 CGAACTCTGCATTAACCACATGAA 59.846 41.667 0.00 0.00 0.00 2.57
1497 1599 8.414778 ACACGAAAACCCACAAAAATAGAATTA 58.585 29.630 0.00 0.00 0.00 1.40
1500 1602 6.210287 ACACGAAAACCCACAAAAATAGAA 57.790 33.333 0.00 0.00 0.00 2.10
1508 1610 7.942990 AGAATTTATTACACGAAAACCCACAA 58.057 30.769 0.00 0.00 0.00 3.33
1509 1611 7.446013 AGAGAATTTATTACACGAAAACCCACA 59.554 33.333 0.00 0.00 0.00 4.17
1510 1612 7.749126 CAGAGAATTTATTACACGAAAACCCAC 59.251 37.037 0.00 0.00 0.00 4.61
1511 1613 7.574217 GCAGAGAATTTATTACACGAAAACCCA 60.574 37.037 0.00 0.00 0.00 4.51
1513 1615 6.745907 GGCAGAGAATTTATTACACGAAAACC 59.254 38.462 0.00 0.00 0.00 3.27
1514 1616 7.481798 CAGGCAGAGAATTTATTACACGAAAAC 59.518 37.037 0.00 0.00 0.00 2.43
1518 1620 5.116180 CCAGGCAGAGAATTTATTACACGA 58.884 41.667 0.00 0.00 0.00 4.35
1519 1621 4.876107 ACCAGGCAGAGAATTTATTACACG 59.124 41.667 0.00 0.00 0.00 4.49
1520 1622 6.759497 AACCAGGCAGAGAATTTATTACAC 57.241 37.500 0.00 0.00 0.00 2.90
1521 1623 7.601856 CAAAACCAGGCAGAGAATTTATTACA 58.398 34.615 0.00 0.00 0.00 2.41
1522 1624 6.531594 GCAAAACCAGGCAGAGAATTTATTAC 59.468 38.462 0.00 0.00 0.00 1.89
1523 1625 6.210385 TGCAAAACCAGGCAGAGAATTTATTA 59.790 34.615 0.00 0.00 34.58 0.98
1525 1627 4.527816 TGCAAAACCAGGCAGAGAATTTAT 59.472 37.500 0.00 0.00 34.58 1.40
1533 1635 0.968405 GGATTGCAAAACCAGGCAGA 59.032 50.000 17.41 0.00 38.85 4.26
1553 1656 8.737168 TCAAGCTTTGCTAAACATACTATCAT 57.263 30.769 0.00 0.00 38.25 2.45
1604 1707 1.988846 TCACATACACCCATCCAACCA 59.011 47.619 0.00 0.00 0.00 3.67
1610 1713 2.555199 GTGAGCTCACATACACCCATC 58.445 52.381 36.23 9.23 45.75 3.51
1626 1729 4.756642 TCAGTGAGGCACTTAAATTGTGAG 59.243 41.667 0.00 0.00 42.59 3.51
1630 1733 4.999950 AGAGTCAGTGAGGCACTTAAATTG 59.000 41.667 0.00 0.00 42.59 2.32
1691 1798 3.813529 AATAACACAAAGACAGCTCGC 57.186 42.857 0.00 0.00 0.00 5.03
1727 1845 7.625828 TCTCTGTCGATATGAAAACTACAGA 57.374 36.000 0.00 0.00 39.48 3.41
1728 1846 8.750416 CAATCTCTGTCGATATGAAAACTACAG 58.250 37.037 0.00 0.00 35.36 2.74
1729 1847 8.466798 TCAATCTCTGTCGATATGAAAACTACA 58.533 33.333 0.00 0.00 0.00 2.74
1730 1848 8.858003 TCAATCTCTGTCGATATGAAAACTAC 57.142 34.615 0.00 0.00 0.00 2.73
1731 1849 9.468532 CATCAATCTCTGTCGATATGAAAACTA 57.531 33.333 0.00 0.00 0.00 2.24
1732 1850 8.200120 TCATCAATCTCTGTCGATATGAAAACT 58.800 33.333 0.00 0.00 0.00 2.66
1780 1900 3.429135 GGTTTTGCCACGAACAACCTTAA 60.429 43.478 0.00 0.00 35.05 1.85
1975 2095 2.507091 TGCCAATGCCAGCATAAAGCA 61.507 47.619 15.88 15.88 41.06 3.91
2068 2195 1.493772 CTGCAACAAGCCACAACATG 58.506 50.000 0.00 0.00 44.83 3.21
2098 2225 4.282957 ACAATCGACATATCAGCAGATCCT 59.717 41.667 0.00 0.00 35.67 3.24
2383 2510 1.234821 CTGGCCTACGTTTGAAAGCA 58.765 50.000 3.32 0.00 0.00 3.91
2420 2547 6.899075 TGTACTCCCATAAATGTACAGGTAGT 59.101 38.462 0.33 1.71 39.85 2.73
2421 2548 7.356089 TGTACTCCCATAAATGTACAGGTAG 57.644 40.000 0.33 0.00 39.85 3.18
2422 2549 7.924358 ATGTACTCCCATAAATGTACAGGTA 57.076 36.000 0.33 0.00 45.20 3.08
2464 2591 6.252599 ACAGGTCTGCATGGATAAATAAGA 57.747 37.500 0.00 0.00 0.00 2.10
2563 2690 2.162681 GTAGCTGTGCCAGTCCAAAAT 58.837 47.619 0.00 0.00 33.43 1.82
2924 3052 4.954089 AGAAAGAGAGATTGGTAGACCCT 58.046 43.478 0.00 0.00 34.29 4.34
2925 3053 4.712337 TGAGAAAGAGAGATTGGTAGACCC 59.288 45.833 0.00 0.00 34.29 4.46
2979 3107 7.750903 GTGATGTAAACTAAGAAGTGAAATGGC 59.249 37.037 0.00 0.00 35.62 4.40
3062 3190 6.098124 TGGAACTTCAAGGATTCACAAAACAT 59.902 34.615 0.00 0.00 0.00 2.71
3165 3293 7.946207 TCACCACTGCAAATAACAAGATAAAA 58.054 30.769 0.00 0.00 0.00 1.52
3987 4119 6.866480 ACAGCCAATAACATTGTAGGAATTG 58.134 36.000 0.00 0.00 0.00 2.32
4364 4496 4.503741 AATTTCAAACCTGATCACACCG 57.496 40.909 0.00 0.00 0.00 4.94
4394 4526 4.381612 CGACAGAAGTAGGTCATAAAGGCA 60.382 45.833 0.00 0.00 33.66 4.75
4429 4564 7.068716 AGGGCATGATAAAATAACAAAGAGGAC 59.931 37.037 0.00 0.00 0.00 3.85
4431 4566 7.352079 AGGGCATGATAAAATAACAAAGAGG 57.648 36.000 0.00 0.00 0.00 3.69
4432 4567 7.068593 TGGAGGGCATGATAAAATAACAAAGAG 59.931 37.037 0.00 0.00 0.00 2.85
4433 4568 6.894654 TGGAGGGCATGATAAAATAACAAAGA 59.105 34.615 0.00 0.00 0.00 2.52
4434 4569 7.111247 TGGAGGGCATGATAAAATAACAAAG 57.889 36.000 0.00 0.00 0.00 2.77
4592 4727 3.996480 ACTAGTTGAGAACTTGGCACTC 58.004 45.455 0.00 0.00 42.81 3.51
4651 4786 2.357009 GTCATGTGAAATGCTGCCTAGG 59.643 50.000 3.67 3.67 0.00 3.02
4718 4853 7.609918 AGATCACTGCTAGTACTACATGGATAG 59.390 40.741 0.00 0.00 0.00 2.08
4752 4887 1.176527 GAGCTGCATAAAACAGGGCA 58.823 50.000 1.02 0.00 35.62 5.36
4976 5111 1.372251 CGTCGCTGTCAGCTTCAGT 60.372 57.895 22.13 0.00 39.60 3.41
5130 5268 1.112916 TTGCTCCTCGACACTGTCCA 61.113 55.000 3.50 0.00 0.00 4.02
5226 5364 3.249189 TCAAGGGCGGCCTCTTGT 61.249 61.111 32.90 13.32 40.67 3.16
5247 5386 0.166814 GCTCGCTGGCACAAGTTAAG 59.833 55.000 0.00 0.00 38.70 1.85
5250 5389 2.203195 TGCTCGCTGGCACAAGTT 60.203 55.556 0.00 0.00 38.70 2.66
5253 5393 1.383456 AAAACTGCTCGCTGGCACAA 61.383 50.000 0.99 0.00 38.70 3.33
5254 5394 1.823470 AAAACTGCTCGCTGGCACA 60.823 52.632 0.99 0.00 37.29 4.57
5261 5401 2.031682 AGACAACATCAAAACTGCTCGC 60.032 45.455 0.00 0.00 0.00 5.03
5262 5402 3.248363 TGAGACAACATCAAAACTGCTCG 59.752 43.478 0.00 0.00 0.00 5.03
5475 5627 1.219522 AATAAGATACGGCCGCACGC 61.220 55.000 28.58 12.69 37.37 5.34
5476 5628 0.782384 GAATAAGATACGGCCGCACG 59.218 55.000 28.58 0.59 40.31 5.34
5477 5629 1.792949 CAGAATAAGATACGGCCGCAC 59.207 52.381 28.58 16.92 0.00 5.34
5478 5630 1.411246 ACAGAATAAGATACGGCCGCA 59.589 47.619 28.58 14.80 0.00 5.69
5480 5632 3.644884 AGACAGAATAAGATACGGCCG 57.355 47.619 26.86 26.86 0.00 6.13
5482 5634 6.663944 AAACAAGACAGAATAAGATACGGC 57.336 37.500 0.00 0.00 0.00 5.68
5483 5635 8.029642 ACAAAACAAGACAGAATAAGATACGG 57.970 34.615 0.00 0.00 0.00 4.02
5484 5636 8.926710 AGACAAAACAAGACAGAATAAGATACG 58.073 33.333 0.00 0.00 0.00 3.06
5486 5638 9.140286 CGAGACAAAACAAGACAGAATAAGATA 57.860 33.333 0.00 0.00 0.00 1.98
5487 5639 7.118390 CCGAGACAAAACAAGACAGAATAAGAT 59.882 37.037 0.00 0.00 0.00 2.40
5489 5641 6.347725 CCCGAGACAAAACAAGACAGAATAAG 60.348 42.308 0.00 0.00 0.00 1.73
5498 5673 3.118555 TGAGAACCCGAGACAAAACAAGA 60.119 43.478 0.00 0.00 0.00 3.02
5528 5704 2.664436 CCGTGGTTTCCTCGTTCGC 61.664 63.158 8.91 0.00 38.62 4.70
5547 5751 2.598632 GCCGCTTATGCTAGCCACG 61.599 63.158 13.29 8.49 37.90 4.94
5580 5784 2.965462 GGCCGGCTACGCACATAC 60.965 66.667 28.56 0.41 39.22 2.39
5633 5837 1.329292 GTGAGTGCACGCAAAAGTACA 59.671 47.619 25.22 5.86 34.94 2.90
5648 5852 2.345880 AAACCGACTGACGCGTGAGT 62.346 55.000 31.22 31.22 41.07 3.41
5762 5966 2.360801 AGAACACCAAATTTGACCACGG 59.639 45.455 19.86 4.10 0.00 4.94
5763 5967 3.066064 TCAGAACACCAAATTTGACCACG 59.934 43.478 19.86 4.87 0.00 4.94
5764 5968 4.359706 GTCAGAACACCAAATTTGACCAC 58.640 43.478 19.86 6.93 31.23 4.16
5765 5969 4.647424 GTCAGAACACCAAATTTGACCA 57.353 40.909 19.86 0.00 31.23 4.02
5766 5970 3.977427 GGTCAGAACACCAAATTTGACC 58.023 45.455 19.86 12.25 45.22 4.02
5767 5971 3.977427 GGGTCAGAACACCAAATTTGAC 58.023 45.455 19.86 6.90 38.32 3.18
5776 5980 0.883370 GACAACGGGGTCAGAACACC 60.883 60.000 4.12 0.00 46.42 4.16
5777 5981 0.179067 TGACAACGGGGTCAGAACAC 60.179 55.000 7.25 0.00 42.56 3.32
5778 5982 2.213280 TGACAACGGGGTCAGAACA 58.787 52.632 7.25 0.00 42.56 3.18
5783 5987 2.131776 AAAGTTTGACAACGGGGTCA 57.868 45.000 7.25 7.25 45.54 4.02
5784 5988 2.031420 GCTAAAGTTTGACAACGGGGTC 60.031 50.000 0.00 2.15 38.03 4.46
5785 5989 1.951602 GCTAAAGTTTGACAACGGGGT 59.048 47.619 0.00 0.00 38.03 4.95
5786 5990 1.950909 TGCTAAAGTTTGACAACGGGG 59.049 47.619 0.00 0.00 38.03 5.73
5787 5991 2.875933 TCTGCTAAAGTTTGACAACGGG 59.124 45.455 0.00 0.00 38.03 5.28
5788 5992 4.545823 TTCTGCTAAAGTTTGACAACGG 57.454 40.909 0.00 0.00 38.03 4.44
5789 5993 5.848036 CAGATTCTGCTAAAGTTTGACAACG 59.152 40.000 0.00 0.00 38.03 4.10
5790 5994 6.853362 GTCAGATTCTGCTAAAGTTTGACAAC 59.147 38.462 8.89 0.00 34.22 3.32
5791 5995 6.017109 GGTCAGATTCTGCTAAAGTTTGACAA 60.017 38.462 8.89 0.00 35.38 3.18
5792 5996 5.470098 GGTCAGATTCTGCTAAAGTTTGACA 59.530 40.000 8.89 0.00 35.38 3.58
5793 5997 5.106515 GGGTCAGATTCTGCTAAAGTTTGAC 60.107 44.000 8.89 0.00 33.51 3.18
5794 5998 5.003804 GGGTCAGATTCTGCTAAAGTTTGA 58.996 41.667 8.89 0.00 0.00 2.69
5795 5999 4.156739 GGGGTCAGATTCTGCTAAAGTTTG 59.843 45.833 8.89 0.00 0.00 2.93
5796 6000 4.336280 GGGGTCAGATTCTGCTAAAGTTT 58.664 43.478 8.89 0.00 0.00 2.66
5797 6001 3.619979 CGGGGTCAGATTCTGCTAAAGTT 60.620 47.826 8.89 0.00 0.00 2.66
5798 6002 2.093447 CGGGGTCAGATTCTGCTAAAGT 60.093 50.000 8.89 0.00 0.00 2.66
5799 6003 2.555199 CGGGGTCAGATTCTGCTAAAG 58.445 52.381 8.89 0.00 0.00 1.85
5800 6004 1.209504 CCGGGGTCAGATTCTGCTAAA 59.790 52.381 8.89 0.00 0.00 1.85
5801 6005 0.830648 CCGGGGTCAGATTCTGCTAA 59.169 55.000 8.89 0.00 0.00 3.09
5802 6006 0.325296 ACCGGGGTCAGATTCTGCTA 60.325 55.000 6.32 0.00 0.00 3.49
5803 6007 1.201429 AACCGGGGTCAGATTCTGCT 61.201 55.000 6.32 0.00 0.00 4.24
5804 6008 1.026718 CAACCGGGGTCAGATTCTGC 61.027 60.000 6.32 4.42 0.00 4.26
5805 6009 1.026718 GCAACCGGGGTCAGATTCTG 61.027 60.000 6.32 7.38 0.00 3.02
5806 6010 1.299976 GCAACCGGGGTCAGATTCT 59.700 57.895 6.32 0.00 0.00 2.40
5807 6011 0.608035 TTGCAACCGGGGTCAGATTC 60.608 55.000 6.32 0.00 0.00 2.52
5808 6012 0.178975 TTTGCAACCGGGGTCAGATT 60.179 50.000 6.32 0.00 0.00 2.40
5809 6013 0.178975 TTTTGCAACCGGGGTCAGAT 60.179 50.000 6.32 0.00 0.00 2.90
5810 6014 0.395862 TTTTTGCAACCGGGGTCAGA 60.396 50.000 6.32 0.00 0.00 3.27
5811 6015 2.119886 TTTTTGCAACCGGGGTCAG 58.880 52.632 6.32 0.00 0.00 3.51
5812 6016 4.356979 TTTTTGCAACCGGGGTCA 57.643 50.000 6.32 0.00 0.00 4.02
5837 6041 9.444600 CAGAGAAAATGATCAAATCCCAATTTT 57.555 29.630 0.00 0.00 32.69 1.82
5838 6042 7.551617 GCAGAGAAAATGATCAAATCCCAATTT 59.448 33.333 0.00 0.00 35.43 1.82
5839 6043 7.046033 GCAGAGAAAATGATCAAATCCCAATT 58.954 34.615 0.00 0.00 0.00 2.32
5840 6044 6.407752 GGCAGAGAAAATGATCAAATCCCAAT 60.408 38.462 0.00 0.00 0.00 3.16
5841 6045 5.105228 GGCAGAGAAAATGATCAAATCCCAA 60.105 40.000 0.00 0.00 0.00 4.12
5842 6046 4.403432 GGCAGAGAAAATGATCAAATCCCA 59.597 41.667 0.00 0.00 0.00 4.37
5843 6047 4.498682 CGGCAGAGAAAATGATCAAATCCC 60.499 45.833 0.00 0.00 0.00 3.85
5844 6048 4.604976 CGGCAGAGAAAATGATCAAATCC 58.395 43.478 0.00 0.00 0.00 3.01
5845 6049 4.040376 GCGGCAGAGAAAATGATCAAATC 58.960 43.478 0.00 0.00 0.00 2.17
5846 6050 3.181483 GGCGGCAGAGAAAATGATCAAAT 60.181 43.478 3.07 0.00 0.00 2.32
5847 6051 2.164219 GGCGGCAGAGAAAATGATCAAA 59.836 45.455 3.07 0.00 0.00 2.69
5848 6052 1.745087 GGCGGCAGAGAAAATGATCAA 59.255 47.619 3.07 0.00 0.00 2.57
5849 6053 1.339920 TGGCGGCAGAGAAAATGATCA 60.340 47.619 7.97 0.00 0.00 2.92
5850 6054 1.382522 TGGCGGCAGAGAAAATGATC 58.617 50.000 7.97 0.00 0.00 2.92
5851 6055 1.952296 GATGGCGGCAGAGAAAATGAT 59.048 47.619 19.29 0.00 0.00 2.45
5852 6056 1.065199 AGATGGCGGCAGAGAAAATGA 60.065 47.619 19.29 0.00 0.00 2.57
5853 6057 1.065102 CAGATGGCGGCAGAGAAAATG 59.935 52.381 19.29 4.27 0.00 2.32
5854 6058 1.065199 TCAGATGGCGGCAGAGAAAAT 60.065 47.619 19.29 0.00 0.00 1.82
5855 6059 0.324614 TCAGATGGCGGCAGAGAAAA 59.675 50.000 19.29 0.00 0.00 2.29
5856 6060 0.391661 GTCAGATGGCGGCAGAGAAA 60.392 55.000 19.29 0.00 0.00 2.52
5857 6061 1.219124 GTCAGATGGCGGCAGAGAA 59.781 57.895 19.29 0.00 0.00 2.87
5858 6062 2.725312 GGTCAGATGGCGGCAGAGA 61.725 63.158 19.29 12.12 0.00 3.10
5859 6063 2.202987 GGTCAGATGGCGGCAGAG 60.203 66.667 19.29 9.77 0.00 3.35
5860 6064 3.785859 GGGTCAGATGGCGGCAGA 61.786 66.667 19.29 6.55 0.00 4.26
5861 6065 4.100084 TGGGTCAGATGGCGGCAG 62.100 66.667 19.29 3.77 0.00 4.85
5862 6066 4.100084 CTGGGTCAGATGGCGGCA 62.100 66.667 16.34 16.34 32.44 5.69
5865 6069 2.087462 TATCGCTGGGTCAGATGGCG 62.087 60.000 0.00 0.00 45.93 5.69
5866 6070 0.320247 CTATCGCTGGGTCAGATGGC 60.320 60.000 0.00 0.00 32.44 4.40
5867 6071 0.319728 CCTATCGCTGGGTCAGATGG 59.680 60.000 0.00 0.00 32.44 3.51
5868 6072 0.319728 CCCTATCGCTGGGTCAGATG 59.680 60.000 0.00 0.00 39.82 2.90
5869 6073 2.751991 CCCTATCGCTGGGTCAGAT 58.248 57.895 0.00 0.00 39.82 2.90
5870 6074 4.277552 CCCTATCGCTGGGTCAGA 57.722 61.111 0.00 0.00 39.82 3.27
5876 6080 2.093973 GGATGTGATACCCTATCGCTGG 60.094 54.545 4.82 0.00 44.06 4.85
5877 6081 2.828520 AGGATGTGATACCCTATCGCTG 59.171 50.000 4.82 0.00 44.06 5.18
5878 6082 3.176924 AGGATGTGATACCCTATCGCT 57.823 47.619 4.82 0.00 44.06 4.93
5879 6083 3.130693 GGTAGGATGTGATACCCTATCGC 59.869 52.174 0.00 0.00 44.01 4.58
5880 6084 3.377485 CGGTAGGATGTGATACCCTATCG 59.623 52.174 0.00 0.00 46.48 2.92
5881 6085 4.342359 ACGGTAGGATGTGATACCCTATC 58.658 47.826 0.00 0.00 38.60 2.08
5882 6086 4.202641 TGACGGTAGGATGTGATACCCTAT 60.203 45.833 0.00 0.00 38.60 2.57
5883 6087 3.138839 TGACGGTAGGATGTGATACCCTA 59.861 47.826 0.00 0.00 38.60 3.53
5884 6088 2.091499 TGACGGTAGGATGTGATACCCT 60.091 50.000 0.00 0.00 38.60 4.34
5885 6089 2.035576 GTGACGGTAGGATGTGATACCC 59.964 54.545 0.00 0.00 38.60 3.69
5886 6090 2.691526 TGTGACGGTAGGATGTGATACC 59.308 50.000 0.00 0.00 38.47 2.73
5887 6091 3.490419 GGTGTGACGGTAGGATGTGATAC 60.490 52.174 0.00 0.00 0.00 2.24
5888 6092 2.691526 GGTGTGACGGTAGGATGTGATA 59.308 50.000 0.00 0.00 0.00 2.15
5889 6093 1.480954 GGTGTGACGGTAGGATGTGAT 59.519 52.381 0.00 0.00 0.00 3.06
5890 6094 0.892755 GGTGTGACGGTAGGATGTGA 59.107 55.000 0.00 0.00 0.00 3.58
5891 6095 0.108329 GGGTGTGACGGTAGGATGTG 60.108 60.000 0.00 0.00 0.00 3.21
5892 6096 1.262640 GGGGTGTGACGGTAGGATGT 61.263 60.000 0.00 0.00 0.00 3.06
5893 6097 1.520666 GGGGTGTGACGGTAGGATG 59.479 63.158 0.00 0.00 0.00 3.51
5894 6098 1.688187 GGGGGTGTGACGGTAGGAT 60.688 63.158 0.00 0.00 0.00 3.24
5895 6099 2.284112 GGGGGTGTGACGGTAGGA 60.284 66.667 0.00 0.00 0.00 2.94
5896 6100 3.766691 CGGGGGTGTGACGGTAGG 61.767 72.222 0.00 0.00 0.00 3.18
5897 6101 3.766691 CCGGGGGTGTGACGGTAG 61.767 72.222 0.00 0.00 42.53 3.18
5903 6107 4.642488 TACTGCCCGGGGGTGTGA 62.642 66.667 25.28 0.00 37.65 3.58
5904 6108 4.096003 CTACTGCCCGGGGGTGTG 62.096 72.222 25.28 0.00 37.65 3.82
5910 6114 2.768344 ATCACCCTACTGCCCGGG 60.768 66.667 19.09 19.09 46.26 5.73
5911 6115 2.505982 CATCACCCTACTGCCCGG 59.494 66.667 0.00 0.00 0.00 5.73
5912 6116 2.311688 GACCATCACCCTACTGCCCG 62.312 65.000 0.00 0.00 0.00 6.13
5913 6117 1.527370 GACCATCACCCTACTGCCC 59.473 63.158 0.00 0.00 0.00 5.36
5914 6118 1.144057 CGACCATCACCCTACTGCC 59.856 63.158 0.00 0.00 0.00 4.85
5915 6119 0.249398 AACGACCATCACCCTACTGC 59.751 55.000 0.00 0.00 0.00 4.40
5916 6120 3.518590 GTTAACGACCATCACCCTACTG 58.481 50.000 0.00 0.00 0.00 2.74
5917 6121 2.165030 CGTTAACGACCATCACCCTACT 59.835 50.000 23.35 0.00 43.02 2.57
5918 6122 2.533266 CGTTAACGACCATCACCCTAC 58.467 52.381 23.35 0.00 43.02 3.18
5919 6123 1.135024 GCGTTAACGACCATCACCCTA 60.135 52.381 31.03 0.00 43.02 3.53
5920 6124 0.390735 GCGTTAACGACCATCACCCT 60.391 55.000 31.03 0.00 43.02 4.34
5921 6125 1.363885 GGCGTTAACGACCATCACCC 61.364 60.000 31.03 15.69 42.67 4.61
5922 6126 2.084013 GGCGTTAACGACCATCACC 58.916 57.895 31.03 16.40 42.67 4.02
5932 6136 0.441145 CCACGTTAGCTGGCGTTAAC 59.559 55.000 13.43 0.00 39.48 2.01
5933 6137 1.293267 GCCACGTTAGCTGGCGTTAA 61.293 55.000 13.43 0.00 44.78 2.01
5934 6138 1.738830 GCCACGTTAGCTGGCGTTA 60.739 57.895 13.43 0.00 44.78 3.18
5935 6139 3.047877 GCCACGTTAGCTGGCGTT 61.048 61.111 13.43 0.00 44.78 4.84
5939 6143 1.586154 CCCTTTGCCACGTTAGCTGG 61.586 60.000 8.66 7.84 0.00 4.85
5940 6144 1.586154 CCCCTTTGCCACGTTAGCTG 61.586 60.000 8.66 0.28 0.00 4.24
5941 6145 1.303317 CCCCTTTGCCACGTTAGCT 60.303 57.895 8.66 0.00 0.00 3.32
5942 6146 2.989881 GCCCCTTTGCCACGTTAGC 61.990 63.158 0.27 0.27 0.00 3.09
5943 6147 3.274067 GCCCCTTTGCCACGTTAG 58.726 61.111 0.00 0.00 0.00 2.34
5959 6163 4.484872 GGGTCCTTGGCGGTAGGC 62.485 72.222 0.00 0.00 44.11 3.93
5960 6164 3.006728 TGGGTCCTTGGCGGTAGG 61.007 66.667 0.00 0.00 0.00 3.18
5961 6165 2.584608 CTGGGTCCTTGGCGGTAG 59.415 66.667 0.00 0.00 0.00 3.18
5962 6166 3.006728 CCTGGGTCCTTGGCGGTA 61.007 66.667 0.00 0.00 0.00 4.02
5974 6178 1.071471 GATCACCATACCGCCTGGG 59.929 63.158 0.00 0.00 40.75 4.45
5975 6179 1.300931 CGATCACCATACCGCCTGG 60.301 63.158 0.00 0.00 42.84 4.45
5976 6180 0.319040 CTCGATCACCATACCGCCTG 60.319 60.000 0.00 0.00 0.00 4.85
5977 6181 2.041976 CTCGATCACCATACCGCCT 58.958 57.895 0.00 0.00 0.00 5.52
5978 6182 1.664965 GCTCGATCACCATACCGCC 60.665 63.158 0.00 0.00 0.00 6.13
5979 6183 1.664965 GGCTCGATCACCATACCGC 60.665 63.158 0.00 0.00 0.00 5.68
5980 6184 1.068472 GTAGGCTCGATCACCATACCG 60.068 57.143 0.00 0.00 0.00 4.02
5981 6185 1.272769 GGTAGGCTCGATCACCATACC 59.727 57.143 0.00 0.00 0.00 2.73
5982 6186 1.961394 TGGTAGGCTCGATCACCATAC 59.039 52.381 1.92 0.00 36.15 2.39
5983 6187 1.961394 GTGGTAGGCTCGATCACCATA 59.039 52.381 9.20 0.00 42.72 2.74
5984 6188 0.753262 GTGGTAGGCTCGATCACCAT 59.247 55.000 9.20 0.00 42.72 3.55
5985 6189 1.327690 GGTGGTAGGCTCGATCACCA 61.328 60.000 13.69 8.29 45.11 4.17
5986 6190 1.327690 TGGTGGTAGGCTCGATCACC 61.328 60.000 12.02 12.02 45.75 4.02
5987 6191 0.535335 TTGGTGGTAGGCTCGATCAC 59.465 55.000 0.00 0.00 0.00 3.06
5988 6192 0.824109 CTTGGTGGTAGGCTCGATCA 59.176 55.000 0.00 0.00 0.00 2.92
5989 6193 0.530870 GCTTGGTGGTAGGCTCGATC 60.531 60.000 0.00 0.00 0.00 3.69
5990 6194 1.264749 TGCTTGGTGGTAGGCTCGAT 61.265 55.000 0.00 0.00 0.00 3.59
5991 6195 1.264749 ATGCTTGGTGGTAGGCTCGA 61.265 55.000 0.00 0.00 0.00 4.04
5992 6196 0.811616 GATGCTTGGTGGTAGGCTCG 60.812 60.000 0.00 0.00 0.00 5.03
5993 6197 0.464554 GGATGCTTGGTGGTAGGCTC 60.465 60.000 0.00 0.00 0.00 4.70
5994 6198 1.609783 GGATGCTTGGTGGTAGGCT 59.390 57.895 0.00 0.00 0.00 4.58
5995 6199 1.453928 GGGATGCTTGGTGGTAGGC 60.454 63.158 0.00 0.00 0.00 3.93
5996 6200 1.153168 CGGGATGCTTGGTGGTAGG 60.153 63.158 0.00 0.00 0.00 3.18
5997 6201 1.153168 CCGGGATGCTTGGTGGTAG 60.153 63.158 0.00 0.00 0.00 3.18
5998 6202 2.994699 CCGGGATGCTTGGTGGTA 59.005 61.111 0.00 0.00 0.00 3.25
5999 6203 4.740822 GCCGGGATGCTTGGTGGT 62.741 66.667 2.18 0.00 0.00 4.16
6000 6204 4.738998 TGCCGGGATGCTTGGTGG 62.739 66.667 2.18 0.00 0.00 4.61
6001 6205 2.535485 TACTGCCGGGATGCTTGGTG 62.535 60.000 2.18 0.00 0.00 4.17
6002 6206 2.257409 CTACTGCCGGGATGCTTGGT 62.257 60.000 2.18 0.00 0.00 3.67
6003 6207 1.524621 CTACTGCCGGGATGCTTGG 60.525 63.158 2.18 0.00 0.00 3.61
6004 6208 1.524621 CCTACTGCCGGGATGCTTG 60.525 63.158 2.18 0.00 0.00 4.01
6005 6209 1.972660 GACCTACTGCCGGGATGCTT 61.973 60.000 2.18 0.00 0.00 3.91
6006 6210 2.365635 ACCTACTGCCGGGATGCT 60.366 61.111 2.18 0.00 0.00 3.79
6007 6211 2.109181 GACCTACTGCCGGGATGC 59.891 66.667 2.18 0.00 0.00 3.91
6008 6212 1.443407 CAGACCTACTGCCGGGATG 59.557 63.158 2.18 0.00 39.86 3.51
6009 6213 3.956377 CAGACCTACTGCCGGGAT 58.044 61.111 2.18 0.00 39.86 3.85
6017 6221 5.202004 CCTTATCCACTACACAGACCTACT 58.798 45.833 0.00 0.00 0.00 2.57
6018 6222 4.954826 ACCTTATCCACTACACAGACCTAC 59.045 45.833 0.00 0.00 0.00 3.18
6019 6223 4.954202 CACCTTATCCACTACACAGACCTA 59.046 45.833 0.00 0.00 0.00 3.08
6020 6224 3.769844 CACCTTATCCACTACACAGACCT 59.230 47.826 0.00 0.00 0.00 3.85
6021 6225 3.514309 ACACCTTATCCACTACACAGACC 59.486 47.826 0.00 0.00 0.00 3.85
6022 6226 4.803098 ACACCTTATCCACTACACAGAC 57.197 45.455 0.00 0.00 0.00 3.51
6023 6227 4.836175 TCAACACCTTATCCACTACACAGA 59.164 41.667 0.00 0.00 0.00 3.41
6024 6228 5.147330 TCAACACCTTATCCACTACACAG 57.853 43.478 0.00 0.00 0.00 3.66
6025 6229 4.020573 CCTCAACACCTTATCCACTACACA 60.021 45.833 0.00 0.00 0.00 3.72
6026 6230 4.020485 ACCTCAACACCTTATCCACTACAC 60.020 45.833 0.00 0.00 0.00 2.90
6027 6231 4.020573 CACCTCAACACCTTATCCACTACA 60.021 45.833 0.00 0.00 0.00 2.74
6028 6232 4.222145 TCACCTCAACACCTTATCCACTAC 59.778 45.833 0.00 0.00 0.00 2.73
6029 6233 4.422057 TCACCTCAACACCTTATCCACTA 58.578 43.478 0.00 0.00 0.00 2.74
6030 6234 3.248024 TCACCTCAACACCTTATCCACT 58.752 45.455 0.00 0.00 0.00 4.00
6031 6235 3.695830 TCACCTCAACACCTTATCCAC 57.304 47.619 0.00 0.00 0.00 4.02
6032 6236 4.567537 CCATTCACCTCAACACCTTATCCA 60.568 45.833 0.00 0.00 0.00 3.41
6033 6237 3.947834 CCATTCACCTCAACACCTTATCC 59.052 47.826 0.00 0.00 0.00 2.59
6034 6238 3.947834 CCCATTCACCTCAACACCTTATC 59.052 47.826 0.00 0.00 0.00 1.75
6035 6239 3.333680 ACCCATTCACCTCAACACCTTAT 59.666 43.478 0.00 0.00 0.00 1.73
6036 6240 2.714250 ACCCATTCACCTCAACACCTTA 59.286 45.455 0.00 0.00 0.00 2.69
6037 6241 1.499007 ACCCATTCACCTCAACACCTT 59.501 47.619 0.00 0.00 0.00 3.50
6038 6242 1.149101 ACCCATTCACCTCAACACCT 58.851 50.000 0.00 0.00 0.00 4.00
6039 6243 2.618045 CCTACCCATTCACCTCAACACC 60.618 54.545 0.00 0.00 0.00 4.16
6040 6244 2.711542 CCTACCCATTCACCTCAACAC 58.288 52.381 0.00 0.00 0.00 3.32
6041 6245 1.004277 GCCTACCCATTCACCTCAACA 59.996 52.381 0.00 0.00 0.00 3.33
6042 6246 1.282157 AGCCTACCCATTCACCTCAAC 59.718 52.381 0.00 0.00 0.00 3.18
6043 6247 1.559682 GAGCCTACCCATTCACCTCAA 59.440 52.381 0.00 0.00 0.00 3.02
6044 6248 1.204146 GAGCCTACCCATTCACCTCA 58.796 55.000 0.00 0.00 0.00 3.86
6045 6249 0.470341 GGAGCCTACCCATTCACCTC 59.530 60.000 0.00 0.00 0.00 3.85
6046 6250 0.253160 TGGAGCCTACCCATTCACCT 60.253 55.000 0.00 0.00 0.00 4.00
6047 6251 0.107165 GTGGAGCCTACCCATTCACC 60.107 60.000 0.00 0.00 35.91 4.02
6048 6252 0.912486 AGTGGAGCCTACCCATTCAC 59.088 55.000 0.00 0.00 35.91 3.18
6049 6253 2.561209 TAGTGGAGCCTACCCATTCA 57.439 50.000 0.00 0.00 35.91 2.57
6050 6254 2.303311 GGATAGTGGAGCCTACCCATTC 59.697 54.545 0.00 0.00 35.91 2.67
6051 6255 2.339769 GGATAGTGGAGCCTACCCATT 58.660 52.381 0.00 0.00 35.91 3.16
6052 6256 1.223077 TGGATAGTGGAGCCTACCCAT 59.777 52.381 0.00 0.00 35.91 4.00
6053 6257 0.639943 TGGATAGTGGAGCCTACCCA 59.360 55.000 0.00 0.00 33.34 4.51
6054 6258 1.049402 GTGGATAGTGGAGCCTACCC 58.951 60.000 0.00 0.00 33.34 3.69
6055 6259 1.049402 GGTGGATAGTGGAGCCTACC 58.951 60.000 0.00 0.00 33.34 3.18
6056 6260 1.049402 GGGTGGATAGTGGAGCCTAC 58.951 60.000 0.00 0.00 33.34 3.18
6057 6261 0.639943 TGGGTGGATAGTGGAGCCTA 59.360 55.000 0.00 0.00 33.34 3.93
6058 6262 0.029681 ATGGGTGGATAGTGGAGCCT 60.030 55.000 0.00 0.00 33.34 4.58
6059 6263 0.846693 AATGGGTGGATAGTGGAGCC 59.153 55.000 0.00 0.00 0.00 4.70
6060 6264 2.262423 GAATGGGTGGATAGTGGAGC 57.738 55.000 0.00 0.00 0.00 4.70
6362 6566 4.408921 TCCACCGGACAAATCTCTATCAAT 59.591 41.667 9.46 0.00 0.00 2.57
6363 6567 3.772572 TCCACCGGACAAATCTCTATCAA 59.227 43.478 9.46 0.00 0.00 2.57
6364 6568 3.371034 TCCACCGGACAAATCTCTATCA 58.629 45.455 9.46 0.00 0.00 2.15
6365 6569 4.608948 ATCCACCGGACAAATCTCTATC 57.391 45.455 9.46 0.00 32.98 2.08
6366 6570 5.126067 CAAATCCACCGGACAAATCTCTAT 58.874 41.667 9.46 0.00 32.98 1.98
6367 6571 4.513442 CAAATCCACCGGACAAATCTCTA 58.487 43.478 9.46 0.00 32.98 2.43
6368 6572 3.347216 CAAATCCACCGGACAAATCTCT 58.653 45.455 9.46 0.00 32.98 3.10
6369 6573 2.423538 CCAAATCCACCGGACAAATCTC 59.576 50.000 9.46 0.00 32.98 2.75
6370 6574 2.041081 TCCAAATCCACCGGACAAATCT 59.959 45.455 9.46 0.00 32.98 2.40
6371 6575 2.423538 CTCCAAATCCACCGGACAAATC 59.576 50.000 9.46 0.00 32.98 2.17
6372 6576 2.446435 CTCCAAATCCACCGGACAAAT 58.554 47.619 9.46 0.00 32.98 2.32
6373 6577 1.904287 CTCCAAATCCACCGGACAAA 58.096 50.000 9.46 0.00 32.98 2.83
6374 6578 0.608035 GCTCCAAATCCACCGGACAA 60.608 55.000 9.46 0.00 32.98 3.18
6375 6579 1.002624 GCTCCAAATCCACCGGACA 60.003 57.895 9.46 0.00 32.98 4.02
6376 6580 0.394352 ATGCTCCAAATCCACCGGAC 60.394 55.000 9.46 0.00 32.98 4.79
6377 6581 0.331278 AATGCTCCAAATCCACCGGA 59.669 50.000 9.46 0.00 35.55 5.14
6378 6582 1.135024 CAAATGCTCCAAATCCACCGG 60.135 52.381 0.00 0.00 0.00 5.28
6379 6583 1.736696 GCAAATGCTCCAAATCCACCG 60.737 52.381 0.00 0.00 38.21 4.94
6380 6584 1.275856 TGCAAATGCTCCAAATCCACC 59.724 47.619 6.97 0.00 42.66 4.61
6381 6585 2.747396 TGCAAATGCTCCAAATCCAC 57.253 45.000 6.97 0.00 42.66 4.02
6382 6586 2.832733 TGATGCAAATGCTCCAAATCCA 59.167 40.909 6.97 0.00 42.66 3.41
6383 6587 3.192466 GTGATGCAAATGCTCCAAATCC 58.808 45.455 6.97 0.00 42.66 3.01
6384 6588 3.192466 GGTGATGCAAATGCTCCAAATC 58.808 45.455 6.97 1.77 42.66 2.17
6385 6589 2.093341 GGGTGATGCAAATGCTCCAAAT 60.093 45.455 6.97 0.00 42.66 2.32
6386 6590 1.275856 GGGTGATGCAAATGCTCCAAA 59.724 47.619 6.97 0.00 42.66 3.28
6387 6591 0.896923 GGGTGATGCAAATGCTCCAA 59.103 50.000 6.97 0.00 42.66 3.53
6388 6592 0.251698 TGGGTGATGCAAATGCTCCA 60.252 50.000 6.97 1.94 42.66 3.86
6389 6593 0.896923 TTGGGTGATGCAAATGCTCC 59.103 50.000 6.97 4.38 42.66 4.70
6390 6594 1.738030 GCTTGGGTGATGCAAATGCTC 60.738 52.381 6.97 2.91 42.66 4.26
6391 6595 0.248289 GCTTGGGTGATGCAAATGCT 59.752 50.000 6.97 0.00 42.66 3.79
6392 6596 0.248289 AGCTTGGGTGATGCAAATGC 59.752 50.000 0.00 0.00 42.50 3.56
6393 6597 2.159198 GGTAGCTTGGGTGATGCAAATG 60.159 50.000 0.00 0.00 0.00 2.32
6394 6598 2.102578 GGTAGCTTGGGTGATGCAAAT 58.897 47.619 0.00 0.00 0.00 2.32
6395 6599 1.075374 AGGTAGCTTGGGTGATGCAAA 59.925 47.619 0.00 0.00 0.00 3.68
6396 6600 0.698238 AGGTAGCTTGGGTGATGCAA 59.302 50.000 0.00 0.00 0.00 4.08
6397 6601 0.253044 GAGGTAGCTTGGGTGATGCA 59.747 55.000 0.00 0.00 0.00 3.96
6398 6602 0.543749 AGAGGTAGCTTGGGTGATGC 59.456 55.000 0.00 0.00 0.00 3.91
6399 6603 1.833630 TGAGAGGTAGCTTGGGTGATG 59.166 52.381 0.00 0.00 0.00 3.07
6400 6604 1.834263 GTGAGAGGTAGCTTGGGTGAT 59.166 52.381 0.00 0.00 0.00 3.06
6401 6605 1.267121 GTGAGAGGTAGCTTGGGTGA 58.733 55.000 0.00 0.00 0.00 4.02
6402 6606 0.976641 TGTGAGAGGTAGCTTGGGTG 59.023 55.000 0.00 0.00 0.00 4.61
6403 6607 0.977395 GTGTGAGAGGTAGCTTGGGT 59.023 55.000 0.00 0.00 0.00 4.51
6404 6608 0.250513 GGTGTGAGAGGTAGCTTGGG 59.749 60.000 0.00 0.00 0.00 4.12
6405 6609 0.250513 GGGTGTGAGAGGTAGCTTGG 59.749 60.000 0.00 0.00 0.00 3.61
6406 6610 0.250513 GGGGTGTGAGAGGTAGCTTG 59.749 60.000 0.00 0.00 0.00 4.01
6407 6611 0.910088 GGGGGTGTGAGAGGTAGCTT 60.910 60.000 0.00 0.00 0.00 3.74
6408 6612 1.306226 GGGGGTGTGAGAGGTAGCT 60.306 63.158 0.00 0.00 0.00 3.32
6409 6613 3.310652 GGGGGTGTGAGAGGTAGC 58.689 66.667 0.00 0.00 0.00 3.58
6423 6627 1.416030 CAACCAACCAAAAGAAGGGGG 59.584 52.381 0.00 0.00 0.00 5.40
6424 6628 1.416030 CCAACCAACCAAAAGAAGGGG 59.584 52.381 0.00 0.00 0.00 4.79
6425 6629 2.393646 TCCAACCAACCAAAAGAAGGG 58.606 47.619 0.00 0.00 0.00 3.95
6426 6630 4.100808 TGATTCCAACCAACCAAAAGAAGG 59.899 41.667 0.00 0.00 0.00 3.46
6427 6631 5.049828 GTGATTCCAACCAACCAAAAGAAG 58.950 41.667 0.00 0.00 0.00 2.85
6428 6632 4.141824 GGTGATTCCAACCAACCAAAAGAA 60.142 41.667 0.00 0.00 35.97 2.52
6429 6633 3.386402 GGTGATTCCAACCAACCAAAAGA 59.614 43.478 0.00 0.00 35.97 2.52
6430 6634 3.387699 AGGTGATTCCAACCAACCAAAAG 59.612 43.478 0.00 0.00 39.02 2.27
6431 6635 3.379452 AGGTGATTCCAACCAACCAAAA 58.621 40.909 0.00 0.00 39.02 2.44
6432 6636 3.039252 AGGTGATTCCAACCAACCAAA 57.961 42.857 0.00 0.00 39.02 3.28
6433 6637 2.765689 AGGTGATTCCAACCAACCAA 57.234 45.000 0.00 0.00 39.02 3.67
6434 6638 4.396357 AATAGGTGATTCCAACCAACCA 57.604 40.909 0.00 0.00 39.02 3.67
6435 6639 5.738619 AAAATAGGTGATTCCAACCAACC 57.261 39.130 0.00 0.00 39.02 3.77
6436 6640 7.892609 ACTAAAAATAGGTGATTCCAACCAAC 58.107 34.615 0.00 0.00 39.02 3.77
6437 6641 8.364142 CAACTAAAAATAGGTGATTCCAACCAA 58.636 33.333 0.00 0.00 36.93 3.67
6438 6642 7.524698 GCAACTAAAAATAGGTGATTCCAACCA 60.525 37.037 5.13 0.00 36.93 3.67
6439 6643 6.811665 GCAACTAAAAATAGGTGATTCCAACC 59.188 38.462 5.13 0.00 36.93 3.77
6440 6644 7.375053 TGCAACTAAAAATAGGTGATTCCAAC 58.625 34.615 5.13 0.00 36.93 3.77
6441 6645 7.531857 TGCAACTAAAAATAGGTGATTCCAA 57.468 32.000 5.13 0.00 36.93 3.53
6442 6646 7.716799 ATGCAACTAAAAATAGGTGATTCCA 57.283 32.000 5.13 0.00 36.93 3.53
6443 6647 7.010460 GCAATGCAACTAAAAATAGGTGATTCC 59.990 37.037 0.00 0.00 36.93 3.01
6444 6648 7.761249 AGCAATGCAACTAAAAATAGGTGATTC 59.239 33.333 8.35 0.00 36.93 2.52
6445 6649 7.614494 AGCAATGCAACTAAAAATAGGTGATT 58.386 30.769 8.35 0.51 36.93 2.57
6446 6650 7.174107 AGCAATGCAACTAAAAATAGGTGAT 57.826 32.000 8.35 0.00 36.93 3.06
6447 6651 6.588719 AGCAATGCAACTAAAAATAGGTGA 57.411 33.333 8.35 0.00 36.93 4.02
6448 6652 5.512788 CGAGCAATGCAACTAAAAATAGGTG 59.487 40.000 8.35 0.00 37.81 4.00
6449 6653 5.640732 CGAGCAATGCAACTAAAAATAGGT 58.359 37.500 8.35 0.00 0.00 3.08
6450 6654 4.500477 GCGAGCAATGCAACTAAAAATAGG 59.500 41.667 8.35 0.00 0.00 2.57
6451 6655 5.003778 GTGCGAGCAATGCAACTAAAAATAG 59.996 40.000 8.35 0.00 45.23 1.73
6452 6656 4.856487 GTGCGAGCAATGCAACTAAAAATA 59.144 37.500 8.35 0.00 45.23 1.40
6453 6657 3.674753 GTGCGAGCAATGCAACTAAAAAT 59.325 39.130 8.35 0.00 45.23 1.82
6454 6658 3.049206 GTGCGAGCAATGCAACTAAAAA 58.951 40.909 8.35 0.00 45.23 1.94
6455 6659 2.660490 GTGCGAGCAATGCAACTAAAA 58.340 42.857 8.35 0.00 45.23 1.52
6456 6660 1.399599 CGTGCGAGCAATGCAACTAAA 60.400 47.619 8.35 0.00 45.23 1.85
6457 6661 0.165727 CGTGCGAGCAATGCAACTAA 59.834 50.000 8.35 0.00 45.23 2.24
6458 6662 0.669012 TCGTGCGAGCAATGCAACTA 60.669 50.000 8.35 0.00 45.23 2.24
6459 6663 1.300971 ATCGTGCGAGCAATGCAACT 61.301 50.000 8.35 0.00 45.23 3.16
6460 6664 0.454957 AATCGTGCGAGCAATGCAAC 60.455 50.000 8.35 0.00 45.23 4.17
6461 6665 0.454789 CAATCGTGCGAGCAATGCAA 60.455 50.000 8.35 0.00 45.23 4.08
6462 6666 1.135108 CAATCGTGCGAGCAATGCA 59.865 52.632 8.35 0.00 40.70 3.96
6463 6667 2.219562 GCAATCGTGCGAGCAATGC 61.220 57.895 0.00 0.00 41.93 3.56
6464 6668 3.972537 GCAATCGTGCGAGCAATG 58.027 55.556 0.00 0.00 41.93 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.