Multiple sequence alignment - TraesCS1A01G350500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G350500 chr1A 100.000 5424 0 0 665 6088 535319114 535313691 0.000000e+00 10017.0
1 TraesCS1A01G350500 chr1A 100.000 190 0 0 1 190 535319778 535319589 9.710000e-93 351.0
2 TraesCS1A01G350500 chr1A 80.928 388 63 10 1388 1771 535317579 535317199 4.610000e-76 296.0
3 TraesCS1A01G350500 chr1A 80.928 388 63 10 2200 2580 535318391 535318008 4.610000e-76 296.0
4 TraesCS1A01G350500 chr1D 92.947 4140 213 37 665 4780 439029043 439024959 0.000000e+00 5954.0
5 TraesCS1A01G350500 chr1D 92.896 915 38 16 4810 5707 439024788 439023884 0.000000e+00 1304.0
6 TraesCS1A01G350500 chr1D 81.723 383 62 8 2203 2580 439028336 439027957 4.580000e-81 313.0
7 TraesCS1A01G350500 chr1D 81.088 386 63 7 1388 1771 439027527 439027150 3.570000e-77 300.0
8 TraesCS1A01G350500 chr1D 95.288 191 6 3 1 188 439029518 439029328 3.570000e-77 300.0
9 TraesCS1A01G350500 chr1D 87.429 175 6 8 5759 5931 439023883 439023723 2.900000e-43 187.0
10 TraesCS1A01G350500 chr1B 94.219 3010 123 24 1793 4777 595183920 595180937 0.000000e+00 4547.0
11 TraesCS1A01G350500 chr1B 86.638 1175 111 21 665 1809 595185127 595183969 0.000000e+00 1258.0
12 TraesCS1A01G350500 chr1B 90.973 709 35 14 4779 5464 595180876 595180174 0.000000e+00 928.0
13 TraesCS1A01G350500 chr1B 79.275 386 64 7 1388 1771 595183494 595183123 7.830000e-64 255.0
14 TraesCS1A01G350500 chr1B 90.099 202 3 4 1 190 595185860 595185664 4.710000e-61 246.0
15 TraesCS1A01G350500 chr1B 82.463 268 33 8 5464 5729 595178726 595178471 7.940000e-54 222.0
16 TraesCS1A01G350500 chr1B 94.444 54 3 0 6035 6088 595178300 595178247 3.910000e-12 84.2
17 TraesCS1A01G350500 chr2D 85.835 473 57 7 4049 4514 117114249 117114718 1.520000e-135 494.0
18 TraesCS1A01G350500 chr3D 78.542 727 116 32 2903 3612 390668561 390667858 5.600000e-120 442.0
19 TraesCS1A01G350500 chr3D 91.803 122 10 0 2026 2147 590458002 590457881 2.920000e-38 171.0
20 TraesCS1A01G350500 chr3A 81.517 422 64 11 3198 3612 511077050 511076636 9.780000e-88 335.0
21 TraesCS1A01G350500 chr3A 88.083 193 19 3 2903 3093 511077345 511077155 6.140000e-55 226.0
22 TraesCS1A01G350500 chr3A 96.491 114 3 1 5926 6038 32195630 32195743 2.900000e-43 187.0
23 TraesCS1A01G350500 chr3B 80.471 425 69 11 3198 3615 508254569 508254152 4.580000e-81 313.0
24 TraesCS1A01G350500 chr3B 87.437 199 20 4 2897 3093 508254863 508254668 2.210000e-54 224.0
25 TraesCS1A01G350500 chr3B 96.296 108 4 0 5930 6037 86092692 86092799 1.740000e-40 178.0
26 TraesCS1A01G350500 chr5B 97.345 113 3 0 5926 6038 380324358 380324246 6.230000e-45 193.0
27 TraesCS1A01G350500 chr5B 97.222 108 3 0 5929 6036 598082965 598082858 3.750000e-42 183.0
28 TraesCS1A01G350500 chr5B 91.803 122 10 0 2026 2147 550037957 550037836 2.920000e-38 171.0
29 TraesCS1A01G350500 chr6B 96.396 111 3 1 5927 6036 447114552 447114662 1.350000e-41 182.0
30 TraesCS1A01G350500 chr4A 96.330 109 4 0 5928 6036 468214039 468214147 4.850000e-41 180.0
31 TraesCS1A01G350500 chr4A 96.296 108 4 0 5929 6036 176868306 176868199 1.740000e-40 178.0
32 TraesCS1A01G350500 chr4A 95.413 109 5 0 5928 6036 586667916 586668024 2.260000e-39 174.0
33 TraesCS1A01G350500 chr4A 91.803 122 10 0 2026 2147 37998839 37998960 2.920000e-38 171.0
34 TraesCS1A01G350500 chr4A 85.294 136 20 0 3199 3334 127484671 127484806 2.290000e-29 141.0
35 TraesCS1A01G350500 chr6A 96.262 107 4 0 5930 6036 52322219 52322113 6.270000e-40 176.0
36 TraesCS1A01G350500 chr5A 92.623 122 9 0 2026 2147 9777042 9777163 6.270000e-40 176.0
37 TraesCS1A01G350500 chr4D 92.623 122 9 0 2026 2147 63985985 63985864 6.270000e-40 176.0
38 TraesCS1A01G350500 chr4D 85.294 136 20 0 3199 3334 340551470 340551335 2.290000e-29 141.0
39 TraesCS1A01G350500 chr7A 91.803 122 10 0 2026 2147 32368380 32368259 2.920000e-38 171.0
40 TraesCS1A01G350500 chr2A 91.803 122 10 0 2026 2147 661703571 661703692 2.920000e-38 171.0
41 TraesCS1A01G350500 chr4B 86.029 136 19 0 3199 3334 422033088 422032953 4.920000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G350500 chr1A 535313691 535319778 6087 True 2740.000000 10017 90.464000 1 6088 4 chr1A.!!$R1 6087
1 TraesCS1A01G350500 chr1D 439023723 439029518 5795 True 1393.000000 5954 88.561833 1 5931 6 chr1D.!!$R1 5930
2 TraesCS1A01G350500 chr1B 595178247 595185860 7613 True 1077.171429 4547 88.301571 1 6088 7 chr1B.!!$R1 6087
3 TraesCS1A01G350500 chr3D 390667858 390668561 703 True 442.000000 442 78.542000 2903 3612 1 chr3D.!!$R1 709
4 TraesCS1A01G350500 chr3A 511076636 511077345 709 True 280.500000 335 84.800000 2903 3612 2 chr3A.!!$R1 709
5 TraesCS1A01G350500 chr3B 508254152 508254863 711 True 268.500000 313 83.954000 2897 3615 2 chr3B.!!$R1 718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 970 0.167251 CCGGATTGTTTTTCGTCGGG 59.833 55.000 0.00 0.0 33.27 5.14 F
1826 1994 0.179086 TGAGTGTTTGTGAGCGCTCA 60.179 50.000 35.30 35.3 46.80 4.26 F
1877 2045 0.901124 GCTGAGAGTGAGGGTGTGAT 59.099 55.000 0.00 0.0 0.00 3.06 F
3083 3274 1.001378 GGTAGCCCAAATTATGCAGCG 60.001 52.381 0.00 0.0 33.39 5.18 F
4046 4242 1.557269 CCAGTGGCTACCTTGGAGCT 61.557 60.000 2.64 0.0 39.98 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2088 0.835941 AGCCCATAGGAGACAGCAAG 59.164 55.000 0.00 0.00 33.47 4.01 R
2945 3136 1.338200 GGCTTCAGATCACGGTGAACT 60.338 52.381 15.72 14.97 28.94 3.01 R
3226 3417 2.887152 GCTCCAAACATCAACTTCAGGT 59.113 45.455 0.00 0.00 0.00 4.00 R
5027 5372 0.676151 CCAGAAAGAGGAGCTGTGGC 60.676 60.000 0.00 0.00 39.06 5.01 R
5295 5646 0.034896 ATTGGTGACAGGTGGACGAC 59.965 55.000 0.00 0.00 44.54 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 169 3.171987 GTGACAGGCACATCTGCG 58.828 61.111 0.00 0.00 46.91 5.18
759 841 2.586245 CCGATCCAAGCTGCTCCA 59.414 61.111 1.00 0.00 0.00 3.86
760 842 1.147824 CCGATCCAAGCTGCTCCAT 59.852 57.895 1.00 0.00 0.00 3.41
879 967 1.063412 GCGCCGGATTGTTTTTCGTC 61.063 55.000 5.05 0.00 0.00 4.20
882 970 0.167251 CCGGATTGTTTTTCGTCGGG 59.833 55.000 0.00 0.00 33.27 5.14
897 992 2.582436 GGGGAAATGACGCGAGGA 59.418 61.111 15.93 0.00 0.00 3.71
899 994 1.366854 GGGGAAATGACGCGAGGAAC 61.367 60.000 15.93 0.00 0.00 3.62
928 1023 3.764466 CCGAGCGAGCTCCCACTT 61.764 66.667 18.19 0.00 39.77 3.16
952 1047 4.812476 TCCGCGCGGAATCCACAG 62.812 66.667 46.56 19.71 42.05 3.66
957 1052 1.065764 CGCGGAATCCACAGATCGA 59.934 57.895 0.00 0.00 0.00 3.59
960 1055 0.936764 CGGAATCCACAGATCGAGCG 60.937 60.000 0.00 0.00 0.00 5.03
1019 1120 2.292569 GCATGTCTAGATCCGACCGTAA 59.707 50.000 0.00 0.00 0.00 3.18
1022 1123 3.614092 TGTCTAGATCCGACCGTAACTT 58.386 45.455 0.00 0.00 0.00 2.66
1046 1147 1.898863 ACCCCTGAGCTGGTGATAAT 58.101 50.000 0.00 0.00 32.36 1.28
1047 1148 3.060479 ACCCCTGAGCTGGTGATAATA 57.940 47.619 0.00 0.00 32.36 0.98
1048 1149 2.706190 ACCCCTGAGCTGGTGATAATAC 59.294 50.000 0.00 0.00 32.36 1.89
1049 1150 2.975489 CCCCTGAGCTGGTGATAATACT 59.025 50.000 0.00 0.00 0.00 2.12
1050 1151 3.244353 CCCCTGAGCTGGTGATAATACTG 60.244 52.174 0.00 0.00 0.00 2.74
1079 1181 5.543507 TTAATTCCTCTTTTGCTTTGCCA 57.456 34.783 0.00 0.00 0.00 4.92
1170 1277 1.677633 CCGGATCGGCAAAACCCTT 60.678 57.895 0.00 0.00 41.17 3.95
1289 1396 3.796111 TGGAGATGGAAGAGAAAGGTCT 58.204 45.455 0.00 0.00 36.55 3.85
1291 1398 3.530535 GAGATGGAAGAGAAAGGTCTGC 58.469 50.000 0.00 0.00 32.80 4.26
1292 1399 2.093764 AGATGGAAGAGAAAGGTCTGCG 60.094 50.000 0.00 0.00 32.80 5.18
1337 1444 4.730521 GCTTGTTTCTGTTTCTGAAGTTCG 59.269 41.667 0.00 0.00 0.00 3.95
1345 1452 4.049186 TGTTTCTGAAGTTCGTAGAGTGC 58.951 43.478 0.00 0.00 38.43 4.40
1367 1474 1.268032 CGTAGATTTGCGCCCATTGAC 60.268 52.381 4.18 0.00 0.00 3.18
1374 1481 1.006337 GCGCCCATTGACAAAAGCA 60.006 52.632 0.00 0.00 0.00 3.91
1377 1484 1.787012 GCCCATTGACAAAAGCACAG 58.213 50.000 0.00 0.00 0.00 3.66
1379 1486 1.606224 CCCATTGACAAAAGCACAGCC 60.606 52.381 0.00 0.00 0.00 4.85
1380 1487 1.606224 CCATTGACAAAAGCACAGCCC 60.606 52.381 0.00 0.00 0.00 5.19
1384 1491 1.076044 ACAAAAGCACAGCCCAGGT 60.076 52.632 0.00 0.00 0.00 4.00
1389 1496 2.036256 GCACAGCCCAGGTCCATT 59.964 61.111 0.00 0.00 0.00 3.16
1408 1515 4.860907 CCATTTGCATGTTTCTGCTCTAAC 59.139 41.667 0.00 0.00 42.75 2.34
1411 1518 2.480037 TGCATGTTTCTGCTCTAACGTG 59.520 45.455 11.00 11.00 42.75 4.49
1456 1563 9.388506 ACACTTCATCCTTATTTCTGTTATCAG 57.611 33.333 0.00 0.00 42.54 2.90
1497 1604 6.699575 ATCAACTTGCAAGTTTTCTACTGT 57.300 33.333 36.19 14.66 46.52 3.55
1561 1668 9.807649 ATCCATAGTTTCTTGAATTTGTTATGC 57.192 29.630 0.00 0.00 0.00 3.14
1579 1686 7.871853 TGTTATGCTAAAAGTTCCTTTCTGTC 58.128 34.615 0.00 0.00 31.99 3.51
1593 1700 4.083431 CCTTTCTGTCACTTTGCTGATCAG 60.083 45.833 18.84 18.84 0.00 2.90
1627 1734 8.626526 TCTTACTATTCCCACTTTTGTTGTTTC 58.373 33.333 0.00 0.00 0.00 2.78
1791 1898 1.679032 GGGTGGATTAACGAGCTGCTT 60.679 52.381 2.53 0.00 0.00 3.91
1826 1994 0.179086 TGAGTGTTTGTGAGCGCTCA 60.179 50.000 35.30 35.30 46.80 4.26
1859 2027 2.534349 CGATGTGTTACGACCTACATGC 59.466 50.000 0.00 0.00 34.18 4.06
1877 2045 0.901124 GCTGAGAGTGAGGGTGTGAT 59.099 55.000 0.00 0.00 0.00 3.06
1920 2088 2.041405 AGGAGGAGGTGCCCTAGC 60.041 66.667 0.00 0.00 36.49 3.42
1927 2095 2.190488 GAGGTGCCCTAGCTTGCTGT 62.190 60.000 5.26 0.00 40.80 4.40
1977 2145 8.455903 TTTGATTGAATAGATGGATTGAGGTC 57.544 34.615 0.00 0.00 0.00 3.85
1987 2156 3.420893 TGGATTGAGGTCTCGCAAAATT 58.579 40.909 0.00 0.00 36.35 1.82
2004 2173 7.708752 TCGCAAAATTTTGTCACCTAAGAAAAT 59.291 29.630 27.13 0.00 40.24 1.82
2023 2192 9.912634 AAGAAAATAATATGTGTTGTGTTGAGG 57.087 29.630 0.00 0.00 0.00 3.86
2165 2351 2.608261 GCTAGTGATGGACTCCGTATGC 60.608 54.545 0.00 0.00 35.96 3.14
2228 2414 7.934665 TGCATGTTTCTAGTGTAAGGTAGAAAA 59.065 33.333 6.20 0.06 43.51 2.29
2229 2415 8.780249 GCATGTTTCTAGTGTAAGGTAGAAAAA 58.220 33.333 6.20 2.47 43.51 1.94
2270 2456 6.662414 TCATCCTTATTTGTGTTAGAAGCG 57.338 37.500 0.00 0.00 0.00 4.68
2315 2501 2.414138 GCAAATTTCTGTTGGCTGATGC 59.586 45.455 0.00 0.00 38.76 3.91
2318 2504 1.317613 TTTCTGTTGGCTGATGCGTT 58.682 45.000 0.00 0.00 40.82 4.84
2359 2545 4.025360 TGGCCATCAATAGCTTGTTGATT 58.975 39.130 18.90 0.00 42.08 2.57
2459 2648 4.678742 GCACTTTGCTCAATTCTCAGTTTC 59.321 41.667 0.00 0.00 40.96 2.78
2463 2652 7.490402 CACTTTGCTCAATTCTCAGTTTCTTTT 59.510 33.333 0.00 0.00 0.00 2.27
2464 2653 8.037166 ACTTTGCTCAATTCTCAGTTTCTTTTT 58.963 29.630 0.00 0.00 0.00 1.94
2465 2654 7.760131 TTGCTCAATTCTCAGTTTCTTTTTG 57.240 32.000 0.00 0.00 0.00 2.44
2684 2874 2.701951 AGTACGTTTCTTCCACTTCCCA 59.298 45.455 0.00 0.00 0.00 4.37
2806 2997 5.660629 TGTTAACCGTATTTGTCACTGTG 57.339 39.130 2.48 0.17 0.00 3.66
2945 3136 9.461312 GTGGAATATTGCCATAGAAATATGGTA 57.539 33.333 14.17 8.27 46.67 3.25
3083 3274 1.001378 GGTAGCCCAAATTATGCAGCG 60.001 52.381 0.00 0.00 33.39 5.18
3114 3305 8.643324 AGGTATATCTCGAGAATAGCTTGTTTT 58.357 33.333 26.25 14.48 31.64 2.43
3174 3365 5.801350 AATGTGTCACAATTCTGATACCG 57.199 39.130 10.28 0.00 32.71 4.02
3226 3417 2.736144 CAGGTAAACTGTACGCTGGA 57.264 50.000 0.00 0.00 42.42 3.86
3378 3570 9.503427 GTTTACTGAAAATGTGCTATACCATTC 57.497 33.333 0.00 0.00 0.00 2.67
3379 3571 8.800370 TTACTGAAAATGTGCTATACCATTCA 57.200 30.769 0.00 0.00 0.00 2.57
3380 3572 7.886629 ACTGAAAATGTGCTATACCATTCAT 57.113 32.000 0.00 0.00 0.00 2.57
3381 3573 7.934457 ACTGAAAATGTGCTATACCATTCATC 58.066 34.615 0.00 0.00 0.00 2.92
3383 3575 9.276590 CTGAAAATGTGCTATACCATTCATCTA 57.723 33.333 0.00 0.00 0.00 1.98
3520 3713 5.185249 TCCTATGAAGAGGATTACCATACGC 59.815 44.000 0.00 0.00 40.89 4.42
3695 3890 7.080724 GCTCTTATTTGGCATTCTATAACAGC 58.919 38.462 0.00 0.00 0.00 4.40
3696 3891 7.255242 GCTCTTATTTGGCATTCTATAACAGCA 60.255 37.037 11.07 0.00 30.05 4.41
3814 4009 7.824289 TCAGGAGTAATTTTGACTTCACTATGG 59.176 37.037 0.00 0.00 0.00 2.74
3829 4024 7.831193 ACTTCACTATGGATTTTGTAGCTTGAT 59.169 33.333 0.00 0.00 0.00 2.57
3835 4030 6.688637 TGGATTTTGTAGCTTGATGATGAG 57.311 37.500 0.00 0.00 0.00 2.90
4046 4242 1.557269 CCAGTGGCTACCTTGGAGCT 61.557 60.000 2.64 0.00 39.98 4.09
4104 4301 3.372060 TCTCATTCGTATAGCTTGTGCG 58.628 45.455 0.00 0.00 45.42 5.34
4133 4330 4.503910 TGCAAATGCTCTTGTACTCGTAT 58.496 39.130 6.97 0.00 42.66 3.06
4145 4345 6.972901 TCTTGTACTCGTATTGCTACTGATTG 59.027 38.462 0.00 0.00 0.00 2.67
4353 4553 4.451900 TGAAGCCGAAATCCTTAGATTCC 58.548 43.478 0.00 0.00 42.03 3.01
4384 4584 3.695816 TGATATTTGACAGTCTCGAGCG 58.304 45.455 7.81 0.85 0.00 5.03
4573 4773 1.667724 GATGGCCTCAGTGACAAATCG 59.332 52.381 3.32 0.00 0.00 3.34
4608 4808 5.768164 TGAAGTTTGAAATTCAGGTACCCTC 59.232 40.000 8.74 0.00 37.99 4.30
4609 4809 4.324267 AGTTTGAAATTCAGGTACCCTCG 58.676 43.478 8.74 0.00 0.00 4.63
4630 4830 5.348986 TCGTAATCTTAACCATCTGCTGTC 58.651 41.667 0.00 0.00 0.00 3.51
4636 4836 6.109156 TCTTAACCATCTGCTGTCAGTTTA 57.891 37.500 0.93 0.00 41.10 2.01
4751 4951 5.355071 TGTGATGGCTAAGCAGTGAAATTAG 59.645 40.000 0.00 0.12 0.00 1.73
4759 4959 7.438160 GGCTAAGCAGTGAAATTAGTTTTGTTT 59.562 33.333 0.00 0.00 0.00 2.83
4777 4977 4.747583 TGTTTCTCCCTCCGATCCATATA 58.252 43.478 0.00 0.00 0.00 0.86
4783 5042 3.699538 TCCCTCCGATCCATATAATCGTG 59.300 47.826 14.90 9.01 43.42 4.35
4808 5067 6.435292 ACTGTTACTCCCTCTGTAAACAAT 57.565 37.500 0.00 0.00 32.58 2.71
4885 5230 5.357878 TCAGGCATGTTCATAATCAACCTTC 59.642 40.000 0.00 0.00 0.00 3.46
4893 5238 7.581476 TGTTCATAATCAACCTTCTTTTCGTC 58.419 34.615 0.00 0.00 0.00 4.20
4950 5295 2.401766 CCGAGGATGTGCTTGGTGC 61.402 63.158 0.00 0.00 43.25 5.01
5027 5372 2.344535 CTTGCAAAGGGTCAGTGGG 58.655 57.895 0.00 0.00 41.27 4.61
5063 5408 0.108585 TGGACCTGTGTTCTGCCTTC 59.891 55.000 0.00 0.00 0.00 3.46
5084 5429 2.183679 CTAACCCAGCTGAGAGTCCTT 58.816 52.381 17.39 0.00 0.00 3.36
5089 5434 2.026449 CCCAGCTGAGAGTCCTTTGATT 60.026 50.000 17.39 0.00 0.00 2.57
5094 5439 4.285517 AGCTGAGAGTCCTTTGATTCTGAA 59.714 41.667 0.00 0.00 37.66 3.02
5295 5646 0.390860 CTAGAGGCATCCCTGTTCCG 59.609 60.000 0.00 0.00 43.12 4.30
5423 5791 5.999205 ACCCATGCTGTTATGATGAAAAA 57.001 34.783 0.00 0.00 0.00 1.94
5424 5792 6.549433 ACCCATGCTGTTATGATGAAAAAT 57.451 33.333 0.00 0.00 0.00 1.82
5502 7315 5.164606 GTGAGTGTCACCGTTTTATGTTT 57.835 39.130 0.00 0.00 41.37 2.83
5507 7320 5.239963 AGTGTCACCGTTTTATGTTTTAGGG 59.760 40.000 0.00 0.00 0.00 3.53
5508 7321 5.008911 GTGTCACCGTTTTATGTTTTAGGGT 59.991 40.000 0.00 0.00 0.00 4.34
5510 7323 4.519730 TCACCGTTTTATGTTTTAGGGTGG 59.480 41.667 11.48 0.00 43.29 4.61
5511 7324 4.278919 CACCGTTTTATGTTTTAGGGTGGT 59.721 41.667 0.00 0.00 40.84 4.16
5513 7326 6.016443 CACCGTTTTATGTTTTAGGGTGGTAA 60.016 38.462 0.00 0.00 40.84 2.85
5514 7327 6.720748 ACCGTTTTATGTTTTAGGGTGGTAAT 59.279 34.615 0.00 0.00 0.00 1.89
5515 7328 7.233144 ACCGTTTTATGTTTTAGGGTGGTAATT 59.767 33.333 0.00 0.00 0.00 1.40
5594 7407 4.595350 AGTTAGAAGTCAGAAAAGGAGGCT 59.405 41.667 0.00 0.00 0.00 4.58
5595 7408 3.415457 AGAAGTCAGAAAAGGAGGCTG 57.585 47.619 0.00 0.00 0.00 4.85
5596 7409 1.809547 GAAGTCAGAAAAGGAGGCTGC 59.190 52.381 0.00 0.00 0.00 5.25
5597 7410 0.037447 AGTCAGAAAAGGAGGCTGCC 59.963 55.000 11.65 11.65 0.00 4.85
5608 7421 2.090494 AGGAGGCTGCCCTTCTAGAATA 60.090 50.000 16.57 0.00 45.82 1.75
5609 7422 2.037902 GGAGGCTGCCCTTCTAGAATAC 59.962 54.545 16.57 0.00 43.12 1.89
5621 7434 4.649088 TCTAGAATACCGTGACCACATG 57.351 45.455 0.00 0.00 0.00 3.21
5625 7438 4.755411 AGAATACCGTGACCACATGTAAG 58.245 43.478 0.00 0.00 0.00 2.34
5630 7443 3.813166 ACCGTGACCACATGTAAGAAAAG 59.187 43.478 0.00 0.00 0.00 2.27
5635 7449 4.756642 TGACCACATGTAAGAAAAGCTGAG 59.243 41.667 0.00 0.00 0.00 3.35
5637 7451 5.133221 ACCACATGTAAGAAAAGCTGAGTT 58.867 37.500 0.00 0.00 0.00 3.01
5638 7452 5.009010 ACCACATGTAAGAAAAGCTGAGTTG 59.991 40.000 0.00 0.00 0.00 3.16
5704 7520 1.335872 GCAGCCGCAATACAAGTTTGT 60.336 47.619 2.75 2.75 40.71 2.83
5705 7521 2.862140 GCAGCCGCAATACAAGTTTGTT 60.862 45.455 2.46 0.00 39.26 2.83
5706 7522 3.610585 GCAGCCGCAATACAAGTTTGTTA 60.611 43.478 2.46 0.00 39.26 2.41
5707 7523 4.541779 CAGCCGCAATACAAGTTTGTTAA 58.458 39.130 2.46 0.00 42.35 2.01
5708 7524 5.160641 CAGCCGCAATACAAGTTTGTTAAT 58.839 37.500 2.46 0.00 42.35 1.40
5709 7525 5.633182 CAGCCGCAATACAAGTTTGTTAATT 59.367 36.000 2.46 0.00 42.35 1.40
5710 7526 6.804295 CAGCCGCAATACAAGTTTGTTAATTA 59.196 34.615 2.46 0.00 42.35 1.40
5711 7527 7.008266 CAGCCGCAATACAAGTTTGTTAATTAG 59.992 37.037 2.46 0.00 42.35 1.73
5712 7528 7.024768 GCCGCAATACAAGTTTGTTAATTAGA 58.975 34.615 2.46 0.00 42.35 2.10
5713 7529 7.700656 GCCGCAATACAAGTTTGTTAATTAGAT 59.299 33.333 2.46 0.00 42.35 1.98
5714 7530 9.567848 CCGCAATACAAGTTTGTTAATTAGATT 57.432 29.630 2.46 0.00 42.35 2.40
5719 7535 9.988350 ATACAAGTTTGTTAATTAGATTGCTCG 57.012 29.630 2.46 0.00 42.35 5.03
5720 7536 7.305474 ACAAGTTTGTTAATTAGATTGCTCGG 58.695 34.615 0.00 0.00 38.47 4.63
5721 7537 6.436843 AGTTTGTTAATTAGATTGCTCGGG 57.563 37.500 0.00 0.00 0.00 5.14
5722 7538 5.944007 AGTTTGTTAATTAGATTGCTCGGGT 59.056 36.000 0.00 0.00 0.00 5.28
5723 7539 7.107542 AGTTTGTTAATTAGATTGCTCGGGTA 58.892 34.615 0.00 0.00 0.00 3.69
5724 7540 7.608761 AGTTTGTTAATTAGATTGCTCGGGTAA 59.391 33.333 0.00 0.00 0.00 2.85
5725 7541 6.913873 TGTTAATTAGATTGCTCGGGTAAC 57.086 37.500 0.00 0.00 0.00 2.50
5737 7553 2.345991 GGTAACCAGACAGCCGCA 59.654 61.111 0.00 0.00 0.00 5.69
5738 7554 2.033194 GGTAACCAGACAGCCGCAC 61.033 63.158 0.00 0.00 0.00 5.34
5739 7555 1.301401 GTAACCAGACAGCCGCACA 60.301 57.895 0.00 0.00 0.00 4.57
5740 7556 0.882927 GTAACCAGACAGCCGCACAA 60.883 55.000 0.00 0.00 0.00 3.33
5741 7557 0.882927 TAACCAGACAGCCGCACAAC 60.883 55.000 0.00 0.00 0.00 3.32
5742 7558 3.716006 CCAGACAGCCGCACAACG 61.716 66.667 0.00 0.00 43.15 4.10
5743 7559 2.967076 CAGACAGCCGCACAACGT 60.967 61.111 0.00 0.00 41.42 3.99
5744 7560 2.661866 AGACAGCCGCACAACGTC 60.662 61.111 0.00 0.00 41.42 4.34
5745 7561 2.964925 GACAGCCGCACAACGTCA 60.965 61.111 0.00 0.00 41.42 4.35
5746 7562 2.943345 GACAGCCGCACAACGTCAG 61.943 63.158 0.00 0.00 41.42 3.51
5747 7563 3.716006 CAGCCGCACAACGTCAGG 61.716 66.667 0.00 0.00 41.42 3.86
5748 7564 4.988598 AGCCGCACAACGTCAGGG 62.989 66.667 0.00 0.00 41.42 4.45
5749 7565 4.980805 GCCGCACAACGTCAGGGA 62.981 66.667 0.00 0.00 41.42 4.20
5750 7566 2.738521 CCGCACAACGTCAGGGAG 60.739 66.667 0.00 0.00 41.42 4.30
5751 7567 2.338620 CGCACAACGTCAGGGAGA 59.661 61.111 0.00 0.00 36.87 3.71
5752 7568 1.079819 CGCACAACGTCAGGGAGAT 60.080 57.895 0.00 0.00 36.87 2.75
5753 7569 0.670546 CGCACAACGTCAGGGAGATT 60.671 55.000 0.00 0.00 36.87 2.40
5754 7570 1.403647 CGCACAACGTCAGGGAGATTA 60.404 52.381 0.00 0.00 36.87 1.75
5757 7573 3.689649 GCACAACGTCAGGGAGATTATTT 59.310 43.478 0.00 0.00 0.00 1.40
5768 7584 6.069673 TCAGGGAGATTATTTTAGCAGGAACA 60.070 38.462 0.00 0.00 0.00 3.18
5781 7612 2.665519 GCAGGAACAAAGCATACACACG 60.666 50.000 0.00 0.00 0.00 4.49
5798 7629 1.069765 CGACAAGTCAGGGCACTGT 59.930 57.895 17.28 0.00 45.14 3.55
5817 7648 7.962918 GGCACTGTACTACAAAATTGTATCTTG 59.037 37.037 6.47 0.00 42.26 3.02
5823 7654 5.938125 ACTACAAAATTGTATCTTGGCGACT 59.062 36.000 6.47 0.00 42.26 4.18
5840 7671 8.903570 TTGGCGACTAATAATTTACAAATGTG 57.096 30.769 0.00 0.00 0.00 3.21
5843 7674 7.044314 GGCGACTAATAATTTACAAATGTGCAC 60.044 37.037 10.75 10.75 0.00 4.57
5914 7749 3.397482 CTTGTAGAGTATGAGGGCATGC 58.603 50.000 9.90 9.90 37.38 4.06
5931 7766 0.171903 TGCGAGACGGGCTAAACTAC 59.828 55.000 0.00 0.00 0.00 2.73
5932 7767 0.455005 GCGAGACGGGCTAAACTACT 59.545 55.000 0.00 0.00 0.00 2.57
5933 7768 1.135170 GCGAGACGGGCTAAACTACTT 60.135 52.381 0.00 0.00 0.00 2.24
5934 7769 2.795117 CGAGACGGGCTAAACTACTTC 58.205 52.381 0.00 0.00 0.00 3.01
5935 7770 2.479219 CGAGACGGGCTAAACTACTTCC 60.479 54.545 0.00 0.00 0.00 3.46
5936 7771 2.759535 GAGACGGGCTAAACTACTTCCT 59.240 50.000 0.00 0.00 0.00 3.36
5937 7772 3.171528 AGACGGGCTAAACTACTTCCTT 58.828 45.455 0.00 0.00 0.00 3.36
5938 7773 3.581770 AGACGGGCTAAACTACTTCCTTT 59.418 43.478 0.00 0.00 0.00 3.11
5939 7774 3.671716 ACGGGCTAAACTACTTCCTTTG 58.328 45.455 0.00 0.00 0.00 2.77
5940 7775 3.072038 ACGGGCTAAACTACTTCCTTTGT 59.928 43.478 0.00 0.00 0.00 2.83
5941 7776 4.070009 CGGGCTAAACTACTTCCTTTGTT 58.930 43.478 0.00 0.00 0.00 2.83
5942 7777 4.153655 CGGGCTAAACTACTTCCTTTGTTC 59.846 45.833 0.00 0.00 0.00 3.18
5943 7778 4.153655 GGGCTAAACTACTTCCTTTGTTCG 59.846 45.833 0.00 0.00 0.00 3.95
5944 7779 4.153655 GGCTAAACTACTTCCTTTGTTCGG 59.846 45.833 0.00 0.00 0.00 4.30
5945 7780 4.992951 GCTAAACTACTTCCTTTGTTCGGA 59.007 41.667 0.00 0.00 0.00 4.55
5946 7781 5.467735 GCTAAACTACTTCCTTTGTTCGGAA 59.532 40.000 0.00 0.00 38.18 4.30
5947 7782 6.148976 GCTAAACTACTTCCTTTGTTCGGAAT 59.851 38.462 0.00 0.00 39.64 3.01
5948 7783 6.954487 AAACTACTTCCTTTGTTCGGAATT 57.046 33.333 0.00 0.00 39.64 2.17
5949 7784 9.211485 CTAAACTACTTCCTTTGTTCGGAATTA 57.789 33.333 0.00 0.00 39.64 1.40
5950 7785 7.430992 AACTACTTCCTTTGTTCGGAATTAC 57.569 36.000 0.00 0.00 39.64 1.89
5951 7786 6.766429 ACTACTTCCTTTGTTCGGAATTACT 58.234 36.000 0.00 0.00 39.64 2.24
5952 7787 7.222161 ACTACTTCCTTTGTTCGGAATTACTT 58.778 34.615 0.00 0.00 39.64 2.24
5953 7788 6.313744 ACTTCCTTTGTTCGGAATTACTTG 57.686 37.500 0.00 0.00 39.64 3.16
5954 7789 5.826208 ACTTCCTTTGTTCGGAATTACTTGT 59.174 36.000 0.00 0.00 39.64 3.16
5955 7790 5.934935 TCCTTTGTTCGGAATTACTTGTC 57.065 39.130 0.00 0.00 0.00 3.18
5956 7791 4.449743 TCCTTTGTTCGGAATTACTTGTCG 59.550 41.667 0.00 0.00 0.00 4.35
5957 7792 4.212636 CCTTTGTTCGGAATTACTTGTCGT 59.787 41.667 0.00 0.00 0.00 4.34
5958 7793 5.406175 CCTTTGTTCGGAATTACTTGTCGTA 59.594 40.000 0.00 0.00 0.00 3.43
5959 7794 6.400727 CCTTTGTTCGGAATTACTTGTCGTAG 60.401 42.308 0.00 0.00 0.00 3.51
5960 7795 5.375417 TGTTCGGAATTACTTGTCGTAGA 57.625 39.130 0.00 0.00 0.00 2.59
5961 7796 5.771469 TGTTCGGAATTACTTGTCGTAGAA 58.229 37.500 0.00 0.00 39.69 2.10
5962 7797 6.215121 TGTTCGGAATTACTTGTCGTAGAAA 58.785 36.000 0.00 0.00 39.69 2.52
5963 7798 6.869913 TGTTCGGAATTACTTGTCGTAGAAAT 59.130 34.615 0.00 0.00 39.69 2.17
5964 7799 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
5965 7800 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
5966 7801 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
5967 7802 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
5968 7803 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
5969 7804 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
5970 7805 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
5971 7806 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
5972 7807 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
5973 7808 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
5974 7809 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
5975 7810 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
5976 7811 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
5977 7812 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
5978 7813 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
5979 7814 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
5980 7815 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
6007 7842 8.957466 TGTTAGTTCTAGATACATCCATATCCG 58.043 37.037 0.00 0.00 32.76 4.18
6008 7843 9.175312 GTTAGTTCTAGATACATCCATATCCGA 57.825 37.037 0.00 0.00 32.76 4.55
6009 7844 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
6010 7845 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
6011 7846 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
6012 7847 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
6013 7848 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
6014 7849 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
6015 7850 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
6016 7851 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
6017 7852 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
6018 7853 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
6019 7854 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
6020 7855 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
6021 7856 5.769367 TCCATATCCGAGACAAGTAATTCG 58.231 41.667 0.00 0.00 0.00 3.34
6027 7862 4.824848 CGAGACAAGTAATTCGGAACAG 57.175 45.455 0.00 0.00 0.00 3.16
6028 7863 4.482386 CGAGACAAGTAATTCGGAACAGA 58.518 43.478 0.00 0.00 0.00 3.41
6029 7864 4.559251 CGAGACAAGTAATTCGGAACAGAG 59.441 45.833 0.00 0.00 0.00 3.35
6030 7865 4.822026 AGACAAGTAATTCGGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
6031 7866 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6032 7867 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6033 7868 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
6044 7879 5.919141 CGGAACAGAGGGAGTATAATTTACG 59.081 44.000 0.00 0.00 0.00 3.18
6052 7887 4.259356 GGAGTATAATTTACGGATGGGCC 58.741 47.826 0.00 0.00 0.00 5.80
6058 7893 3.806949 ATTTACGGATGGGCCATACAT 57.193 42.857 27.89 16.67 35.94 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 128 2.760385 GTGGACGGGGAGGAGGAG 60.760 72.222 0.00 0.00 0.00 3.69
117 129 4.393778 GGTGGACGGGGAGGAGGA 62.394 72.222 0.00 0.00 0.00 3.71
146 161 1.410850 AATCGGGGGATCGCAGATGT 61.411 55.000 16.66 7.87 45.12 3.06
154 169 0.533032 GAGGATCGAATCGGGGGATC 59.467 60.000 1.76 0.00 36.65 3.36
736 818 3.465403 AGCTTGGATCGGCGAGCT 61.465 61.111 25.16 19.21 40.44 4.09
879 967 2.845752 TTCCTCGCGTCATTTCCCCG 62.846 60.000 5.77 0.00 0.00 5.73
882 970 1.693083 CGGTTCCTCGCGTCATTTCC 61.693 60.000 5.77 2.52 0.00 3.13
952 1047 0.657951 GACGGAAGCTACGCTCGATC 60.658 60.000 10.28 0.00 38.25 3.69
957 1052 0.961358 ACAGAGACGGAAGCTACGCT 60.961 55.000 10.28 8.52 42.56 5.07
960 1055 0.523757 GCGACAGAGACGGAAGCTAC 60.524 60.000 0.00 0.00 0.00 3.58
976 1071 1.372499 GTCGCTACACTTGGTGCGA 60.372 57.895 13.99 13.99 46.22 5.10
992 1092 1.600663 CGGATCTAGACATGCGTGGTC 60.601 57.143 11.36 5.69 33.29 4.02
993 1093 0.385751 CGGATCTAGACATGCGTGGT 59.614 55.000 11.36 0.00 33.29 4.16
1004 1105 3.114065 GCAAAGTTACGGTCGGATCTAG 58.886 50.000 0.00 0.00 0.00 2.43
1019 1120 2.116125 GCTCAGGGGTGGCAAAGT 59.884 61.111 0.00 0.00 0.00 2.66
1046 1147 8.512138 GCAAAAGAGGAATTAAAAGCTACAGTA 58.488 33.333 0.00 0.00 0.00 2.74
1047 1148 7.231519 AGCAAAAGAGGAATTAAAAGCTACAGT 59.768 33.333 0.00 0.00 0.00 3.55
1048 1149 7.597386 AGCAAAAGAGGAATTAAAAGCTACAG 58.403 34.615 0.00 0.00 0.00 2.74
1049 1150 7.524717 AGCAAAAGAGGAATTAAAAGCTACA 57.475 32.000 0.00 0.00 0.00 2.74
1050 1151 8.703336 CAAAGCAAAAGAGGAATTAAAAGCTAC 58.297 33.333 0.00 0.00 0.00 3.58
1066 1167 2.727798 CGATTCAGTGGCAAAGCAAAAG 59.272 45.455 0.00 0.00 0.00 2.27
1079 1181 0.035317 TCACAGCCAAGCGATTCAGT 59.965 50.000 0.00 0.00 0.00 3.41
1170 1277 1.202099 TACCAAAGGACCCGATGCCA 61.202 55.000 0.00 0.00 0.00 4.92
1289 1396 0.456824 GAACAGAGTGAGCGATCGCA 60.457 55.000 38.60 19.38 44.88 5.10
1291 1398 1.131315 TCTGAACAGAGTGAGCGATCG 59.869 52.381 11.69 11.69 32.82 3.69
1292 1399 2.929531 TCTGAACAGAGTGAGCGATC 57.070 50.000 0.00 0.00 32.82 3.69
1337 1444 2.279136 CGCAAATCTACGTGCACTCTAC 59.721 50.000 16.19 0.00 40.94 2.59
1345 1452 0.732571 AATGGGCGCAAATCTACGTG 59.267 50.000 10.83 0.00 0.00 4.49
1367 1474 1.662044 GACCTGGGCTGTGCTTTTG 59.338 57.895 0.00 0.00 0.00 2.44
1374 1481 1.607467 GCAAATGGACCTGGGCTGT 60.607 57.895 0.00 0.00 0.00 4.40
1377 1484 1.259840 ACATGCAAATGGACCTGGGC 61.260 55.000 0.00 0.00 0.00 5.36
1379 1486 2.564062 AGAAACATGCAAATGGACCTGG 59.436 45.455 0.00 0.00 0.00 4.45
1380 1487 3.581755 CAGAAACATGCAAATGGACCTG 58.418 45.455 0.00 0.00 0.00 4.00
1408 1515 5.064198 TGTTTGACAGTTTCTACTTTCCACG 59.936 40.000 0.00 0.00 31.43 4.94
1411 1518 6.679327 AGTGTTTGACAGTTTCTACTTTCC 57.321 37.500 0.00 0.00 31.43 3.13
1526 1633 9.699410 ATTCAAGAAACTATGGATGGACAATTA 57.301 29.630 0.00 0.00 0.00 1.40
1593 1700 9.780186 AAAAGTGGGAATAGTAAGAGTATATGC 57.220 33.333 0.00 0.00 0.00 3.14
1603 1710 7.067251 ACGAAACAACAAAAGTGGGAATAGTAA 59.933 33.333 0.00 0.00 0.00 2.24
1608 1715 4.729227 ACGAAACAACAAAAGTGGGAAT 57.271 36.364 0.00 0.00 0.00 3.01
1627 1734 9.878599 ATAAAAACTGAGATTTGACAAAGTACG 57.121 29.630 6.77 0.00 0.00 3.67
1720 1827 6.901300 GGGGTATCTATGACCTCATAATACCA 59.099 42.308 25.37 2.99 43.51 3.25
1826 1994 6.744537 GTCGTAACACATCGTAGTCTGTTAAT 59.255 38.462 0.00 0.00 32.35 1.40
1859 2027 3.692257 AAATCACACCCTCACTCTCAG 57.308 47.619 0.00 0.00 0.00 3.35
1877 2045 9.967451 TGTAGTCACCATATTCCTTCATAAAAA 57.033 29.630 0.00 0.00 0.00 1.94
1920 2088 0.835941 AGCCCATAGGAGACAGCAAG 59.164 55.000 0.00 0.00 33.47 4.01
1927 2095 4.487282 ACCTAACATAGCCCATAGGAGA 57.513 45.455 4.78 0.00 38.61 3.71
1977 2145 5.757886 TCTTAGGTGACAAAATTTTGCGAG 58.242 37.500 26.94 15.07 41.79 5.03
2004 2173 5.867174 CGAGACCTCAACACAACACATATTA 59.133 40.000 0.00 0.00 0.00 0.98
2021 2190 3.317430 ACTTAACGAGTTTCACGAGACCT 59.683 43.478 0.00 0.00 33.92 3.85
2022 2191 3.636381 ACTTAACGAGTTTCACGAGACC 58.364 45.455 0.00 0.00 33.92 3.85
2061 2247 6.888632 ACTTCTTAATGAACAGAGCCAATCAT 59.111 34.615 0.00 0.00 34.11 2.45
2165 2351 7.824289 TGTAATCAACCAACTCTCCAGATTTAG 59.176 37.037 0.00 0.00 0.00 1.85
2228 2414 7.234355 AGGATGAATAGTTTGAGAGGTTGTTT 58.766 34.615 0.00 0.00 0.00 2.83
2229 2415 6.784031 AGGATGAATAGTTTGAGAGGTTGTT 58.216 36.000 0.00 0.00 0.00 2.83
2270 2456 8.397906 TGCAAGTTGATTACTAAAGCATCATAC 58.602 33.333 7.16 0.00 35.60 2.39
2315 2501 9.607285 GGCCAATTGTGATATTTATACTAAACG 57.393 33.333 4.43 0.00 0.00 3.60
2463 2652 8.445275 TCTCTTTTCACTGTAAATTAGCACAA 57.555 30.769 0.00 0.00 0.00 3.33
2464 2653 8.445275 TTCTCTTTTCACTGTAAATTAGCACA 57.555 30.769 0.00 0.00 0.00 4.57
2465 2654 9.899226 ATTTCTCTTTTCACTGTAAATTAGCAC 57.101 29.630 0.00 0.00 0.00 4.40
2684 2874 4.154942 ACCCAATCTTTGCAATGAACTCT 58.845 39.130 17.82 0.16 0.00 3.24
2775 2966 6.674066 ACAAATACGGTTAACAAACATGAGG 58.326 36.000 8.10 0.00 0.00 3.86
2776 2967 7.322699 GTGACAAATACGGTTAACAAACATGAG 59.677 37.037 8.10 0.00 0.00 2.90
2806 2997 6.739112 AGAAGCAGACAAAAACAAAGTATCC 58.261 36.000 0.00 0.00 0.00 2.59
2945 3136 1.338200 GGCTTCAGATCACGGTGAACT 60.338 52.381 15.72 14.97 28.94 3.01
3099 3290 8.342634 TGTGAAAGTGTAAAACAAGCTATTCTC 58.657 33.333 0.00 0.00 0.00 2.87
3114 3305 8.927675 ACATTTATTAACCCTGTGAAAGTGTA 57.072 30.769 0.00 0.00 0.00 2.90
3174 3365 8.244113 CCTAAGTAAATGGAGAAAACATTGTCC 58.756 37.037 0.00 0.00 38.47 4.02
3226 3417 2.887152 GCTCCAAACATCAACTTCAGGT 59.113 45.455 0.00 0.00 0.00 4.00
3335 3526 5.582665 CAGTAAACTGGAGAAGATAGTTGCC 59.417 44.000 2.01 0.00 40.20 4.52
3520 3713 3.126858 ACCATGAATGTTCACGGATTTCG 59.873 43.478 14.13 0.00 42.87 3.46
3678 3873 4.842574 TCACTGCTGTTATAGAATGCCAA 58.157 39.130 0.00 0.00 0.00 4.52
3679 3874 4.486125 TCACTGCTGTTATAGAATGCCA 57.514 40.909 0.00 0.00 0.00 4.92
3735 3930 7.066284 CAGAAAGGACTCCCATTTTGTACATAG 59.934 40.741 0.00 0.00 33.88 2.23
3782 3977 7.719193 TGAAGTCAAAATTACTCCTGAACATGA 59.281 33.333 0.00 0.00 0.00 3.07
3814 4009 7.495279 AGAGTCTCATCATCAAGCTACAAAATC 59.505 37.037 1.94 0.00 0.00 2.17
3829 4024 8.015185 TGATAACATCATTCAGAGTCTCATCA 57.985 34.615 1.94 0.00 33.59 3.07
3835 4030 8.133627 CCCATTTTGATAACATCATTCAGAGTC 58.866 37.037 0.00 0.00 39.39 3.36
3922 4117 7.535997 AGAACAACCAAAAAGAACAGAGTAAC 58.464 34.615 0.00 0.00 0.00 2.50
3973 4169 2.633657 CAACTGTCGCCTGCACAC 59.366 61.111 0.00 0.00 0.00 3.82
4046 4242 5.047306 ACGAACCATTGACTCTTGATACTCA 60.047 40.000 0.00 0.00 0.00 3.41
4067 4263 3.830744 TGAGAGAAAAACTCCCAACGA 57.169 42.857 0.00 0.00 45.96 3.85
4068 4264 4.377431 CGAATGAGAGAAAAACTCCCAACG 60.377 45.833 0.00 0.00 45.96 4.10
4104 4301 4.708726 ACAAGAGCATTTGCAATCTACC 57.291 40.909 0.00 0.00 45.16 3.18
4133 4330 1.167851 GCACAGCCAATCAGTAGCAA 58.832 50.000 0.00 0.00 0.00 3.91
4145 4345 1.467734 CAGATCACAGAAAGCACAGCC 59.532 52.381 0.00 0.00 0.00 4.85
4353 4553 9.482627 GAGACTGTCAAATATCATAAAGTAGGG 57.517 37.037 10.88 0.00 0.00 3.53
4384 4584 4.811024 TCAGTTATGATTTCTCGTGGATGC 59.189 41.667 0.00 0.00 0.00 3.91
4573 4773 2.489971 TCAAACTTCACGATGTGGGTC 58.510 47.619 0.00 0.00 33.87 4.46
4608 4808 5.109210 TGACAGCAGATGGTTAAGATTACG 58.891 41.667 0.00 0.00 0.00 3.18
4609 4809 6.109359 ACTGACAGCAGATGGTTAAGATTAC 58.891 40.000 1.25 0.00 45.17 1.89
4630 4830 3.616956 TCAGGACCAGCTCATAAACTG 57.383 47.619 0.00 0.00 0.00 3.16
4636 4836 1.005097 TGCAAATCAGGACCAGCTCAT 59.995 47.619 0.00 0.00 0.00 2.90
4751 4951 2.747989 GGATCGGAGGGAGAAACAAAAC 59.252 50.000 0.00 0.00 0.00 2.43
4759 4959 4.207955 CGATTATATGGATCGGAGGGAGA 58.792 47.826 12.79 0.00 41.89 3.71
4777 4977 3.833070 AGAGGGAGTAACAGTTCACGATT 59.167 43.478 0.00 0.00 0.00 3.34
4783 5042 5.850614 TGTTTACAGAGGGAGTAACAGTTC 58.149 41.667 0.00 0.00 31.67 3.01
4848 5193 7.734942 TGAACATGCCTGAATATGATACTACA 58.265 34.615 0.00 0.00 0.00 2.74
4885 5230 6.727824 AAGAAGTGTGATATGGACGAAAAG 57.272 37.500 0.00 0.00 0.00 2.27
4893 5238 5.346822 GCAAGCAAAAAGAAGTGTGATATGG 59.653 40.000 0.00 0.00 0.00 2.74
5027 5372 0.676151 CCAGAAAGAGGAGCTGTGGC 60.676 60.000 0.00 0.00 39.06 5.01
5063 5408 0.827368 GGACTCTCAGCTGGGTTAGG 59.173 60.000 14.66 5.36 0.00 2.69
5084 5429 5.248640 GGAAGTCACCATCTTCAGAATCAA 58.751 41.667 7.74 0.00 41.88 2.57
5089 5434 2.619931 TGGGAAGTCACCATCTTCAGA 58.380 47.619 7.74 0.00 41.88 3.27
5094 5439 1.271597 GCAGTTGGGAAGTCACCATCT 60.272 52.381 0.00 0.00 38.29 2.90
5295 5646 0.034896 ATTGGTGACAGGTGGACGAC 59.965 55.000 0.00 0.00 44.54 4.34
5366 5725 6.480981 GCCGGCATTATACTAGTAAAGAACAA 59.519 38.462 24.80 0.00 0.00 2.83
5423 5791 4.098349 ACAGTTCATGTCAACAGCACAAAT 59.902 37.500 0.00 0.00 37.75 2.32
5424 5792 3.443329 ACAGTTCATGTCAACAGCACAAA 59.557 39.130 0.00 0.00 37.75 2.83
5518 7331 8.353423 ACAGATTGCCTTGATTAAACTGTTAT 57.647 30.769 0.00 0.00 34.96 1.89
5594 7407 2.429610 GTCACGGTATTCTAGAAGGGCA 59.570 50.000 11.53 0.00 0.00 5.36
5595 7408 2.223994 GGTCACGGTATTCTAGAAGGGC 60.224 54.545 11.53 3.55 0.00 5.19
5596 7409 3.028850 TGGTCACGGTATTCTAGAAGGG 58.971 50.000 11.53 0.00 0.00 3.95
5597 7410 3.446161 TGTGGTCACGGTATTCTAGAAGG 59.554 47.826 11.53 3.08 0.00 3.46
5608 7421 3.478857 TTTCTTACATGTGGTCACGGT 57.521 42.857 9.11 0.86 0.00 4.83
5609 7422 3.364964 GCTTTTCTTACATGTGGTCACGG 60.365 47.826 9.11 0.00 0.00 4.94
5621 7434 3.495001 AGACGCAACTCAGCTTTTCTTAC 59.505 43.478 0.00 0.00 0.00 2.34
5625 7438 3.242739 TGAAAGACGCAACTCAGCTTTTC 60.243 43.478 0.00 0.00 32.55 2.29
5630 7443 1.657538 CGTTGAAAGACGCAACTCAGC 60.658 52.381 0.00 0.00 42.53 4.26
5679 7495 0.676184 TTGTATTGCGGCTGCCAAAA 59.324 45.000 20.29 12.36 41.78 2.44
5704 7520 5.991861 TGGTTACCCGAGCAATCTAATTAA 58.008 37.500 0.00 0.00 0.00 1.40
5705 7521 5.364446 TCTGGTTACCCGAGCAATCTAATTA 59.636 40.000 0.00 0.00 0.00 1.40
5706 7522 4.163458 TCTGGTTACCCGAGCAATCTAATT 59.837 41.667 0.00 0.00 0.00 1.40
5707 7523 3.709653 TCTGGTTACCCGAGCAATCTAAT 59.290 43.478 0.00 0.00 0.00 1.73
5708 7524 3.101437 TCTGGTTACCCGAGCAATCTAA 58.899 45.455 0.00 0.00 0.00 2.10
5709 7525 2.429610 GTCTGGTTACCCGAGCAATCTA 59.570 50.000 0.00 0.00 0.00 1.98
5710 7526 1.207329 GTCTGGTTACCCGAGCAATCT 59.793 52.381 0.00 0.00 0.00 2.40
5711 7527 1.066430 TGTCTGGTTACCCGAGCAATC 60.066 52.381 0.00 0.00 0.00 2.67
5712 7528 0.981183 TGTCTGGTTACCCGAGCAAT 59.019 50.000 0.00 0.00 0.00 3.56
5713 7529 0.320374 CTGTCTGGTTACCCGAGCAA 59.680 55.000 0.00 0.00 0.00 3.91
5714 7530 1.972198 CTGTCTGGTTACCCGAGCA 59.028 57.895 0.00 0.00 0.00 4.26
5715 7531 1.448013 GCTGTCTGGTTACCCGAGC 60.448 63.158 0.00 0.00 0.00 5.03
5716 7532 1.218316 GGCTGTCTGGTTACCCGAG 59.782 63.158 0.00 0.00 0.00 4.63
5717 7533 2.642254 CGGCTGTCTGGTTACCCGA 61.642 63.158 0.00 0.00 38.04 5.14
5718 7534 2.125673 CGGCTGTCTGGTTACCCG 60.126 66.667 0.00 0.00 0.00 5.28
5719 7535 2.436115 GCGGCTGTCTGGTTACCC 60.436 66.667 0.00 0.00 0.00 3.69
5720 7536 2.033194 GTGCGGCTGTCTGGTTACC 61.033 63.158 0.00 0.00 0.00 2.85
5721 7537 0.882927 TTGTGCGGCTGTCTGGTTAC 60.883 55.000 0.00 0.00 0.00 2.50
5722 7538 0.882927 GTTGTGCGGCTGTCTGGTTA 60.883 55.000 0.00 0.00 0.00 2.85
5723 7539 2.186826 GTTGTGCGGCTGTCTGGTT 61.187 57.895 0.00 0.00 0.00 3.67
5724 7540 2.591715 GTTGTGCGGCTGTCTGGT 60.592 61.111 0.00 0.00 0.00 4.00
5725 7541 3.716006 CGTTGTGCGGCTGTCTGG 61.716 66.667 0.00 0.00 36.85 3.86
5726 7542 2.967076 ACGTTGTGCGGCTGTCTG 60.967 61.111 0.00 0.00 46.52 3.51
5733 7549 2.507110 ATCTCCCTGACGTTGTGCGG 62.507 60.000 0.00 0.00 46.52 5.69
5735 7551 2.380084 TAATCTCCCTGACGTTGTGC 57.620 50.000 0.00 0.00 0.00 4.57
5736 7552 5.880054 AAAATAATCTCCCTGACGTTGTG 57.120 39.130 0.00 0.00 0.00 3.33
5737 7553 5.585047 GCTAAAATAATCTCCCTGACGTTGT 59.415 40.000 0.00 0.00 0.00 3.32
5738 7554 5.584649 TGCTAAAATAATCTCCCTGACGTTG 59.415 40.000 0.00 0.00 0.00 4.10
5739 7555 5.741011 TGCTAAAATAATCTCCCTGACGTT 58.259 37.500 0.00 0.00 0.00 3.99
5740 7556 5.353394 TGCTAAAATAATCTCCCTGACGT 57.647 39.130 0.00 0.00 0.00 4.34
5741 7557 4.752101 CCTGCTAAAATAATCTCCCTGACG 59.248 45.833 0.00 0.00 0.00 4.35
5742 7558 5.930135 TCCTGCTAAAATAATCTCCCTGAC 58.070 41.667 0.00 0.00 0.00 3.51
5743 7559 6.069673 TGTTCCTGCTAAAATAATCTCCCTGA 60.070 38.462 0.00 0.00 0.00 3.86
5744 7560 6.122277 TGTTCCTGCTAAAATAATCTCCCTG 58.878 40.000 0.00 0.00 0.00 4.45
5745 7561 6.327386 TGTTCCTGCTAAAATAATCTCCCT 57.673 37.500 0.00 0.00 0.00 4.20
5746 7562 7.404671 TTTGTTCCTGCTAAAATAATCTCCC 57.595 36.000 0.00 0.00 0.00 4.30
5747 7563 6.975197 GCTTTGTTCCTGCTAAAATAATCTCC 59.025 38.462 0.00 0.00 0.00 3.71
5748 7564 7.538575 TGCTTTGTTCCTGCTAAAATAATCTC 58.461 34.615 0.00 0.00 0.00 2.75
5749 7565 7.466746 TGCTTTGTTCCTGCTAAAATAATCT 57.533 32.000 0.00 0.00 0.00 2.40
5750 7566 9.237846 GTATGCTTTGTTCCTGCTAAAATAATC 57.762 33.333 0.00 0.00 0.00 1.75
5751 7567 8.748412 TGTATGCTTTGTTCCTGCTAAAATAAT 58.252 29.630 0.00 0.00 0.00 1.28
5752 7568 8.026607 GTGTATGCTTTGTTCCTGCTAAAATAA 58.973 33.333 0.00 0.00 0.00 1.40
5753 7569 7.175816 TGTGTATGCTTTGTTCCTGCTAAAATA 59.824 33.333 0.00 0.00 0.00 1.40
5754 7570 6.015519 TGTGTATGCTTTGTTCCTGCTAAAAT 60.016 34.615 0.00 0.00 0.00 1.82
5757 7573 4.215399 GTGTGTATGCTTTGTTCCTGCTAA 59.785 41.667 0.00 0.00 0.00 3.09
5768 7584 3.462982 TGACTTGTCGTGTGTATGCTTT 58.537 40.909 0.00 0.00 0.00 3.51
5781 7612 1.344763 AGTACAGTGCCCTGACTTGTC 59.655 52.381 2.19 0.00 41.50 3.18
5798 7629 7.101054 AGTCGCCAAGATACAATTTTGTAGTA 58.899 34.615 8.90 0.00 45.80 1.82
5817 7648 6.970043 TGCACATTTGTAAATTATTAGTCGCC 59.030 34.615 0.00 0.00 0.00 5.54
5823 7654 9.404348 CACACTGTGCACATTTGTAAATTATTA 57.596 29.630 25.72 0.00 0.00 0.98
5843 7674 0.881796 TAGCTCCTCGTCACACACTG 59.118 55.000 0.00 0.00 0.00 3.66
5914 7749 2.479219 GGAAGTAGTTTAGCCCGTCTCG 60.479 54.545 0.00 0.00 0.00 4.04
5933 7768 4.449743 CGACAAGTAATTCCGAACAAAGGA 59.550 41.667 0.00 0.00 35.69 3.36
5934 7769 4.212636 ACGACAAGTAATTCCGAACAAAGG 59.787 41.667 0.00 0.00 0.00 3.11
5935 7770 5.338614 ACGACAAGTAATTCCGAACAAAG 57.661 39.130 0.00 0.00 0.00 2.77
5936 7771 6.215121 TCTACGACAAGTAATTCCGAACAAA 58.785 36.000 0.00 0.00 34.45 2.83
5937 7772 5.771469 TCTACGACAAGTAATTCCGAACAA 58.229 37.500 0.00 0.00 34.45 2.83
5938 7773 5.375417 TCTACGACAAGTAATTCCGAACA 57.625 39.130 0.00 0.00 34.45 3.18
5939 7774 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
5940 7775 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
5941 7776 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
5942 7777 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
5943 7778 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
5944 7779 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
5945 7780 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
5946 7781 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
5947 7782 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
5948 7783 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
5949 7784 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
5950 7785 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
5951 7786 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
5952 7787 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
5953 7788 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
5954 7789 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
5981 7816 8.957466 CGGATATGGATGTATCTAGAACTAACA 58.043 37.037 0.00 0.00 32.78 2.41
5982 7817 9.175312 TCGGATATGGATGTATCTAGAACTAAC 57.825 37.037 0.00 0.00 32.78 2.34
5983 7818 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
5984 7819 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
5985 7820 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
5986 7821 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
5987 7822 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
5988 7823 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
5989 7824 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
5990 7825 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
5991 7826 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
5992 7827 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
5993 7828 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
5994 7829 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
5995 7830 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
5996 7831 6.309009 CGAATTACTTGTCTCGGATATGGATG 59.691 42.308 0.00 0.00 0.00 3.51
5997 7832 6.390721 CGAATTACTTGTCTCGGATATGGAT 58.609 40.000 0.00 0.00 0.00 3.41
5998 7833 5.769367 CGAATTACTTGTCTCGGATATGGA 58.231 41.667 0.00 0.00 0.00 3.41
6006 7841 4.482386 TCTGTTCCGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
6007 7842 4.865365 CCTCTGTTCCGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
6008 7843 4.322801 CCCTCTGTTCCGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6009 7844 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6010 7845 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6011 7846 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6012 7847 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6013 7848 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6014 7849 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6015 7850 7.850935 ATTATACTCCCTCTGTTCCGAATTA 57.149 36.000 0.00 0.00 0.00 1.40
6016 7851 6.749036 ATTATACTCCCTCTGTTCCGAATT 57.251 37.500 0.00 0.00 0.00 2.17
6017 7852 6.749036 AATTATACTCCCTCTGTTCCGAAT 57.251 37.500 0.00 0.00 0.00 3.34
6018 7853 6.555463 AAATTATACTCCCTCTGTTCCGAA 57.445 37.500 0.00 0.00 0.00 4.30
6019 7854 6.238842 CGTAAATTATACTCCCTCTGTTCCGA 60.239 42.308 0.00 0.00 0.00 4.55
6020 7855 5.919141 CGTAAATTATACTCCCTCTGTTCCG 59.081 44.000 0.00 0.00 0.00 4.30
6021 7856 6.041296 TCCGTAAATTATACTCCCTCTGTTCC 59.959 42.308 0.00 0.00 0.00 3.62
6022 7857 7.047460 TCCGTAAATTATACTCCCTCTGTTC 57.953 40.000 0.00 0.00 0.00 3.18
6023 7858 7.442656 CATCCGTAAATTATACTCCCTCTGTT 58.557 38.462 0.00 0.00 0.00 3.16
6024 7859 6.014499 CCATCCGTAAATTATACTCCCTCTGT 60.014 42.308 0.00 0.00 0.00 3.41
6025 7860 6.398918 CCATCCGTAAATTATACTCCCTCTG 58.601 44.000 0.00 0.00 0.00 3.35
6026 7861 5.484290 CCCATCCGTAAATTATACTCCCTCT 59.516 44.000 0.00 0.00 0.00 3.69
6027 7862 5.731591 CCCATCCGTAAATTATACTCCCTC 58.268 45.833 0.00 0.00 0.00 4.30
6028 7863 4.019591 GCCCATCCGTAAATTATACTCCCT 60.020 45.833 0.00 0.00 0.00 4.20
6029 7864 4.259356 GCCCATCCGTAAATTATACTCCC 58.741 47.826 0.00 0.00 0.00 4.30
6030 7865 4.259356 GGCCCATCCGTAAATTATACTCC 58.741 47.826 0.00 0.00 0.00 3.85
6031 7866 4.901868 TGGCCCATCCGTAAATTATACTC 58.098 43.478 0.00 0.00 37.80 2.59
6032 7867 4.986054 TGGCCCATCCGTAAATTATACT 57.014 40.909 0.00 0.00 37.80 2.12
6033 7868 6.174760 TGTATGGCCCATCCGTAAATTATAC 58.825 40.000 0.00 0.00 38.04 1.47
6044 7879 0.957395 CGCTCATGTATGGCCCATCC 60.957 60.000 0.00 0.00 0.00 3.51
6052 7887 3.748048 CCTACCATTTCCGCTCATGTATG 59.252 47.826 0.00 0.00 0.00 2.39
6058 7893 1.223487 GGCCTACCATTTCCGCTCA 59.777 57.895 0.00 0.00 35.26 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.