Multiple sequence alignment - TraesCS1A01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G349900 chr1A 100.000 4486 0 0 1 4486 534934709 534930224 0.000000e+00 8285.0
1 TraesCS1A01G349900 chr1A 85.180 749 70 18 3299 4046 534915288 534914580 0.000000e+00 730.0
2 TraesCS1A01G349900 chr1A 84.780 749 73 13 3299 4046 534896198 534895490 0.000000e+00 713.0
3 TraesCS1A01G349900 chr1A 84.646 749 74 13 3299 4046 534877312 534876604 0.000000e+00 708.0
4 TraesCS1A01G349900 chr1A 84.979 719 67 18 3299 4016 534919600 534918922 0.000000e+00 691.0
5 TraesCS1A01G349900 chr1A 86.145 166 21 2 2209 2373 534613969 534613805 1.280000e-40 178.0
6 TraesCS1A01G349900 chr1B 90.638 3322 215 52 644 3906 593838469 593835185 0.000000e+00 4324.0
7 TraesCS1A01G349900 chr1B 88.605 509 43 8 3689 4193 593831075 593830578 4.960000e-169 604.0
8 TraesCS1A01G349900 chr1B 85.222 406 42 5 3 391 593838884 593838480 6.990000e-108 401.0
9 TraesCS1A01G349900 chr1B 84.950 299 26 4 4203 4486 593834968 593834674 7.340000e-73 285.0
10 TraesCS1A01G349900 chr1B 79.085 306 41 16 1972 2257 593831504 593831202 5.920000e-44 189.0
11 TraesCS1A01G349900 chr1B 96.296 108 4 0 4054 4161 593835074 593834967 1.280000e-40 178.0
12 TraesCS1A01G349900 chr1D 93.712 2815 139 11 1686 4486 438228613 438225823 0.000000e+00 4183.0
13 TraesCS1A01G349900 chr1D 91.381 1021 76 8 3035 4046 438185257 438184240 0.000000e+00 1387.0
14 TraesCS1A01G349900 chr1D 89.621 819 62 18 829 1639 438229420 438228617 0.000000e+00 1020.0
15 TraesCS1A01G349900 chr1D 84.345 939 98 19 3275 4170 438204731 438203799 0.000000e+00 874.0
16 TraesCS1A01G349900 chr1D 86.378 323 24 7 86 390 438230242 438229922 7.190000e-88 335.0
17 TraesCS1A01G349900 chr1D 87.402 254 26 3 391 638 492941846 492942099 2.040000e-73 287.0
18 TraesCS1A01G349900 chr1D 79.557 406 64 11 3651 4046 438181517 438181121 5.720000e-69 272.0
19 TraesCS1A01G349900 chr1D 85.283 265 31 4 2950 3212 438204992 438204734 2.660000e-67 267.0
20 TraesCS1A01G349900 chr1D 76.552 435 66 21 1972 2372 438205581 438205149 5.880000e-49 206.0
21 TraesCS1A01G349900 chr1D 90.066 151 12 2 4043 4193 438184212 438184065 4.580000e-45 193.0
22 TraesCS1A01G349900 chr1D 84.828 145 13 3 639 774 438229924 438229780 2.180000e-28 137.0
23 TraesCS1A01G349900 chrUn 84.913 749 72 13 3299 4046 324198164 324197456 0.000000e+00 719.0
24 TraesCS1A01G349900 chrUn 84.646 749 74 13 3299 4046 387177965 387178673 0.000000e+00 708.0
25 TraesCS1A01G349900 chrUn 84.562 719 70 13 3299 4016 308680666 308679988 0.000000e+00 675.0
26 TraesCS1A01G349900 chrUn 85.517 290 35 5 3299 3587 357242728 357242445 3.390000e-76 296.0
27 TraesCS1A01G349900 chrUn 87.500 256 26 3 389 638 23538145 23537890 1.580000e-74 291.0
28 TraesCS1A01G349900 chr2A 88.583 254 23 5 391 638 435675882 435675629 2.030000e-78 303.0
29 TraesCS1A01G349900 chr2A 78.125 160 32 2 4327 4486 104877013 104877169 1.030000e-16 99.0
30 TraesCS1A01G349900 chr7A 87.795 254 25 3 391 638 350545543 350545796 4.390000e-75 292.0
31 TraesCS1A01G349900 chr7A 86.614 254 27 4 391 638 328033985 328033733 1.590000e-69 274.0
32 TraesCS1A01G349900 chr7D 86.719 256 28 3 389 638 480577341 480577596 3.420000e-71 279.0
33 TraesCS1A01G349900 chr5B 87.097 248 26 5 397 638 645793395 645793642 4.420000e-70 276.0
34 TraesCS1A01G349900 chr5B 82.000 100 18 0 4361 4460 577220383 577220284 8.000000e-13 86.1
35 TraesCS1A01G349900 chr2D 86.667 255 25 6 391 638 470677004 470676752 1.590000e-69 274.0
36 TraesCS1A01G349900 chr2D 76.423 123 22 3 4363 4485 44055308 44055193 4.850000e-05 60.2
37 TraesCS1A01G349900 chr6B 86.166 253 29 3 392 638 150880818 150881070 7.400000e-68 268.0
38 TraesCS1A01G349900 chr5D 81.988 161 25 2 4327 4486 80453386 80453229 2.820000e-27 134.0
39 TraesCS1A01G349900 chr5D 86.517 89 12 0 4358 4446 130667785 130667873 1.030000e-16 99.0
40 TraesCS1A01G349900 chr3A 84.559 136 19 2 1475 1609 510691049 510690915 2.820000e-27 134.0
41 TraesCS1A01G349900 chr3D 83.088 136 21 2 1475 1609 390076057 390075923 6.090000e-24 122.0
42 TraesCS1A01G349900 chr3D 85.714 105 14 1 4361 4464 548540056 548539952 4.740000e-20 110.0
43 TraesCS1A01G349900 chr5A 83.333 126 21 0 4361 4486 368557943 368557818 2.840000e-22 117.0
44 TraesCS1A01G349900 chr3B 82.353 136 22 2 1475 1609 507301485 507301351 2.840000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G349900 chr1A 534930224 534934709 4485 True 8285.000000 8285 100.000000 1 4486 1 chr1A.!!$R4 4485
1 TraesCS1A01G349900 chr1A 534895490 534896198 708 True 713.000000 713 84.780000 3299 4046 1 chr1A.!!$R3 747
2 TraesCS1A01G349900 chr1A 534914580 534919600 5020 True 710.500000 730 85.079500 3299 4046 2 chr1A.!!$R5 747
3 TraesCS1A01G349900 chr1A 534876604 534877312 708 True 708.000000 708 84.646000 3299 4046 1 chr1A.!!$R2 747
4 TraesCS1A01G349900 chr1B 593830578 593838884 8306 True 996.833333 4324 87.466000 3 4486 6 chr1B.!!$R1 4483
5 TraesCS1A01G349900 chr1D 438225823 438230242 4419 True 1418.750000 4183 88.634750 86 4486 4 chr1D.!!$R3 4400
6 TraesCS1A01G349900 chr1D 438181121 438185257 4136 True 617.333333 1387 87.001333 3035 4193 3 chr1D.!!$R1 1158
7 TraesCS1A01G349900 chr1D 438203799 438205581 1782 True 449.000000 874 82.060000 1972 4170 3 chr1D.!!$R2 2198
8 TraesCS1A01G349900 chrUn 324197456 324198164 708 True 719.000000 719 84.913000 3299 4046 1 chrUn.!!$R3 747
9 TraesCS1A01G349900 chrUn 387177965 387178673 708 False 708.000000 708 84.646000 3299 4046 1 chrUn.!!$F1 747
10 TraesCS1A01G349900 chrUn 308679988 308680666 678 True 675.000000 675 84.562000 3299 4016 1 chrUn.!!$R2 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.033796 TAGCTAGGTAGTGTGGCCGT 60.034 55.000 0.00 0.0 0.00 5.68 F
902 1237 0.244994 ACTGAAGCAGAGCTACACGG 59.755 55.000 0.82 0.0 38.25 4.94 F
1672 2085 1.135859 CGCAACTGTTCTGGAAGATGC 60.136 52.381 0.00 0.0 46.36 3.91 F
1839 2252 0.671781 ACAGTGCAGTCAAGGATCGC 60.672 55.000 0.00 0.0 0.00 4.58 F
2622 3067 2.234300 TGGGAGTTTCAGTCAACGTC 57.766 50.000 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1518 0.753262 GTGTAGGCACGGATCCTCAT 59.247 55.000 10.75 0.0 35.75 2.90 R
1838 2251 0.782384 AAACTCATCGACGAACACGC 59.218 50.000 0.00 0.0 0.00 5.34 R
2773 3218 1.070134 GCAATATCTACAGGCCCGTGA 59.930 52.381 0.49 0.0 0.00 4.35 R
2780 3225 2.149578 GCAGCAGGCAATATCTACAGG 58.850 52.381 0.00 0.0 43.97 4.00 R
3931 8778 0.035915 GGGGAGCAGTGAGAGTTTCC 60.036 60.000 0.00 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.033796 TAGCTAGGTAGTGTGGCCGT 60.034 55.000 0.00 0.00 0.00 5.68
53 54 3.490419 CGTAGGGTAGTGGATTTTCCTCG 60.490 52.174 0.00 0.00 37.46 4.63
56 57 1.558294 GGTAGTGGATTTTCCTCGGGT 59.442 52.381 0.00 0.00 37.46 5.28
57 58 2.026542 GGTAGTGGATTTTCCTCGGGTT 60.027 50.000 0.00 0.00 37.46 4.11
66 67 5.335426 GGATTTTCCTCGGGTTTTACTCAAC 60.335 44.000 0.00 0.00 32.53 3.18
72 73 4.565564 CCTCGGGTTTTACTCAACTAATCG 59.434 45.833 0.00 0.00 0.00 3.34
79 80 7.801783 GGGTTTTACTCAACTAATCGAGTTTTG 59.198 37.037 0.00 0.00 46.79 2.44
135 136 4.099573 AGACAAGTTTTCTCCTTCGAGTGA 59.900 41.667 0.00 0.00 37.40 3.41
155 156 6.790319 AGTGAAAATAGTAGAAACCCCATGT 58.210 36.000 0.00 0.00 0.00 3.21
178 180 4.511454 TCATCTGACAAGGTTCGTCAAAAG 59.489 41.667 0.00 0.00 42.56 2.27
186 188 4.647424 AGGTTCGTCAAAAGCAATTTCA 57.353 36.364 0.00 0.00 0.00 2.69
198 200 2.070783 GCAATTTCACATTGGGCACAG 58.929 47.619 0.00 0.00 0.00 3.66
210 212 2.126057 TGGGCACAGATGGTCATATCA 58.874 47.619 0.00 0.00 0.00 2.15
254 256 0.538516 CCCCGTGTCAAATTGGGACA 60.539 55.000 8.66 8.66 44.88 4.02
266 268 2.746277 GGGACACCGTCATGCCAC 60.746 66.667 0.00 0.00 33.68 5.01
288 305 4.360140 ACCCTTCCCTTTTCCTCCTTATTT 59.640 41.667 0.00 0.00 0.00 1.40
342 359 8.335356 GGTTGTTCCAAAGCTTTAGAATTTTTC 58.665 33.333 20.48 9.79 35.97 2.29
343 360 8.878769 GTTGTTCCAAAGCTTTAGAATTTTTCA 58.121 29.630 20.48 11.92 0.00 2.69
391 409 7.735917 TCATGTAACACCCAATAAGATCTAGG 58.264 38.462 0.00 0.00 0.00 3.02
392 410 5.925509 TGTAACACCCAATAAGATCTAGGC 58.074 41.667 0.00 0.00 0.00 3.93
395 413 4.047883 ACACCCAATAAGATCTAGGCCTT 58.952 43.478 12.58 0.00 0.00 4.35
396 414 4.141390 ACACCCAATAAGATCTAGGCCTTG 60.141 45.833 12.58 9.98 0.00 3.61
397 415 4.047883 ACCCAATAAGATCTAGGCCTTGT 58.952 43.478 12.58 0.00 0.00 3.16
398 416 4.478686 ACCCAATAAGATCTAGGCCTTGTT 59.521 41.667 12.58 3.35 0.00 2.83
399 417 5.044105 ACCCAATAAGATCTAGGCCTTGTTT 60.044 40.000 12.58 8.46 0.00 2.83
400 418 5.300286 CCCAATAAGATCTAGGCCTTGTTTG 59.700 44.000 12.58 7.93 0.00 2.93
401 419 5.888161 CCAATAAGATCTAGGCCTTGTTTGT 59.112 40.000 12.58 1.58 0.00 2.83
402 420 6.378280 CCAATAAGATCTAGGCCTTGTTTGTT 59.622 38.462 12.58 8.88 0.00 2.83
403 421 7.556275 CCAATAAGATCTAGGCCTTGTTTGTTA 59.444 37.037 12.58 10.78 0.00 2.41
404 422 8.398665 CAATAAGATCTAGGCCTTGTTTGTTAC 58.601 37.037 12.58 0.00 0.00 2.50
405 423 5.499004 AGATCTAGGCCTTGTTTGTTACA 57.501 39.130 12.58 0.00 34.12 2.41
406 424 5.491982 AGATCTAGGCCTTGTTTGTTACAG 58.508 41.667 12.58 0.00 38.19 2.74
407 425 3.408634 TCTAGGCCTTGTTTGTTACAGC 58.591 45.455 12.58 0.00 38.19 4.40
408 426 2.364972 AGGCCTTGTTTGTTACAGCT 57.635 45.000 0.00 0.00 38.19 4.24
409 427 2.666317 AGGCCTTGTTTGTTACAGCTT 58.334 42.857 0.00 0.00 38.19 3.74
410 428 3.031013 AGGCCTTGTTTGTTACAGCTTT 58.969 40.909 0.00 0.00 38.19 3.51
411 429 3.123050 GGCCTTGTTTGTTACAGCTTTG 58.877 45.455 0.00 0.00 38.19 2.77
412 430 3.123050 GCCTTGTTTGTTACAGCTTTGG 58.877 45.455 0.00 0.00 38.19 3.28
413 431 3.430236 GCCTTGTTTGTTACAGCTTTGGT 60.430 43.478 0.00 0.00 38.19 3.67
414 432 4.754322 CCTTGTTTGTTACAGCTTTGGTT 58.246 39.130 0.00 0.00 38.19 3.67
415 433 4.566360 CCTTGTTTGTTACAGCTTTGGTTG 59.434 41.667 0.00 0.00 38.19 3.77
416 434 4.116747 TGTTTGTTACAGCTTTGGTTGG 57.883 40.909 0.00 0.00 31.68 3.77
417 435 3.764434 TGTTTGTTACAGCTTTGGTTGGA 59.236 39.130 0.00 0.00 31.68 3.53
418 436 4.404073 TGTTTGTTACAGCTTTGGTTGGAT 59.596 37.500 0.00 0.00 31.68 3.41
419 437 5.105146 TGTTTGTTACAGCTTTGGTTGGATT 60.105 36.000 0.00 0.00 31.68 3.01
420 438 5.606348 TTGTTACAGCTTTGGTTGGATTT 57.394 34.783 0.00 0.00 0.00 2.17
421 439 5.606348 TGTTACAGCTTTGGTTGGATTTT 57.394 34.783 0.00 0.00 0.00 1.82
422 440 6.716934 TGTTACAGCTTTGGTTGGATTTTA 57.283 33.333 0.00 0.00 0.00 1.52
423 441 7.113658 TGTTACAGCTTTGGTTGGATTTTAA 57.886 32.000 0.00 0.00 0.00 1.52
424 442 7.731054 TGTTACAGCTTTGGTTGGATTTTAAT 58.269 30.769 0.00 0.00 0.00 1.40
425 443 7.870445 TGTTACAGCTTTGGTTGGATTTTAATC 59.130 33.333 0.00 0.00 34.66 1.75
426 444 6.418057 ACAGCTTTGGTTGGATTTTAATCA 57.582 33.333 4.97 0.00 37.15 2.57
427 445 7.008021 ACAGCTTTGGTTGGATTTTAATCAT 57.992 32.000 4.97 0.00 37.15 2.45
428 446 7.099120 ACAGCTTTGGTTGGATTTTAATCATC 58.901 34.615 4.97 0.00 37.15 2.92
429 447 6.536224 CAGCTTTGGTTGGATTTTAATCATCC 59.464 38.462 7.10 7.10 40.80 3.51
430 448 5.519927 GCTTTGGTTGGATTTTAATCATCCG 59.480 40.000 4.97 0.00 43.04 4.18
431 449 6.597832 TTTGGTTGGATTTTAATCATCCGT 57.402 33.333 4.97 0.00 43.04 4.69
432 450 5.574891 TGGTTGGATTTTAATCATCCGTG 57.425 39.130 4.97 0.00 43.04 4.94
433 451 4.400884 TGGTTGGATTTTAATCATCCGTGG 59.599 41.667 4.97 0.00 43.04 4.94
434 452 4.642885 GGTTGGATTTTAATCATCCGTGGA 59.357 41.667 4.97 0.00 43.04 4.02
435 453 5.301805 GGTTGGATTTTAATCATCCGTGGAT 59.698 40.000 0.00 0.00 43.04 3.41
436 454 6.183360 GGTTGGATTTTAATCATCCGTGGATT 60.183 38.462 0.00 0.00 43.04 3.01
437 455 6.633500 TGGATTTTAATCATCCGTGGATTC 57.367 37.500 0.00 0.00 43.04 2.52
438 456 5.238432 TGGATTTTAATCATCCGTGGATTCG 59.762 40.000 0.00 0.00 43.04 3.34
439 457 4.545823 TTTTAATCATCCGTGGATTCGC 57.454 40.909 0.00 0.00 36.45 4.70
440 458 3.469008 TTAATCATCCGTGGATTCGCT 57.531 42.857 0.00 0.00 36.45 4.93
441 459 2.332063 AATCATCCGTGGATTCGCTT 57.668 45.000 0.00 0.00 29.18 4.68
442 460 1.871080 ATCATCCGTGGATTCGCTTC 58.129 50.000 0.00 0.00 31.62 3.86
443 461 0.534873 TCATCCGTGGATTCGCTTCA 59.465 50.000 0.00 0.00 31.62 3.02
444 462 0.933097 CATCCGTGGATTCGCTTCAG 59.067 55.000 0.00 0.00 31.62 3.02
445 463 0.537188 ATCCGTGGATTCGCTTCAGT 59.463 50.000 0.00 0.00 0.00 3.41
446 464 0.389817 TCCGTGGATTCGCTTCAGTG 60.390 55.000 0.00 0.00 0.00 3.66
447 465 1.421485 CGTGGATTCGCTTCAGTGC 59.579 57.895 0.00 0.00 0.00 4.40
448 466 1.796796 GTGGATTCGCTTCAGTGCC 59.203 57.895 0.00 0.00 0.00 5.01
449 467 1.741401 TGGATTCGCTTCAGTGCCG 60.741 57.895 0.00 0.00 0.00 5.69
450 468 1.447838 GGATTCGCTTCAGTGCCGA 60.448 57.895 0.00 0.00 0.00 5.54
451 469 1.019278 GGATTCGCTTCAGTGCCGAA 61.019 55.000 12.95 12.95 33.12 4.30
452 470 0.371645 GATTCGCTTCAGTGCCGAAG 59.628 55.000 14.91 3.85 44.37 3.79
456 474 4.681421 CTTCAGTGCCGAAGCTGA 57.319 55.556 0.00 0.00 40.80 4.26
457 475 3.149899 CTTCAGTGCCGAAGCTGAT 57.850 52.632 0.00 0.00 40.83 2.90
458 476 1.446907 CTTCAGTGCCGAAGCTGATT 58.553 50.000 0.00 0.00 40.83 2.57
459 477 1.129998 CTTCAGTGCCGAAGCTGATTG 59.870 52.381 0.00 0.00 40.83 2.67
460 478 0.321346 TCAGTGCCGAAGCTGATTGA 59.679 50.000 0.00 0.00 40.80 2.57
461 479 1.159285 CAGTGCCGAAGCTGATTGAA 58.841 50.000 0.00 0.00 40.80 2.69
462 480 1.741706 CAGTGCCGAAGCTGATTGAAT 59.258 47.619 0.00 0.00 40.80 2.57
463 481 2.012673 AGTGCCGAAGCTGATTGAATC 58.987 47.619 0.00 0.00 40.80 2.52
464 482 1.739466 GTGCCGAAGCTGATTGAATCA 59.261 47.619 7.73 7.73 40.80 2.57
475 493 3.084039 TGATTGAATCAGCTTCACCACC 58.916 45.455 3.29 0.00 43.54 4.61
476 494 1.522668 TTGAATCAGCTTCACCACCG 58.477 50.000 0.00 0.00 43.54 4.94
477 495 0.684535 TGAATCAGCTTCACCACCGA 59.315 50.000 0.00 0.00 38.97 4.69
478 496 1.071542 TGAATCAGCTTCACCACCGAA 59.928 47.619 0.00 0.00 38.97 4.30
479 497 1.734465 GAATCAGCTTCACCACCGAAG 59.266 52.381 0.00 0.00 44.37 3.79
480 498 0.687354 ATCAGCTTCACCACCGAAGT 59.313 50.000 0.00 0.00 43.61 3.01
481 499 1.334160 TCAGCTTCACCACCGAAGTA 58.666 50.000 0.00 0.00 43.61 2.24
482 500 1.000506 TCAGCTTCACCACCGAAGTAC 59.999 52.381 0.00 0.00 43.61 2.73
483 501 1.045407 AGCTTCACCACCGAAGTACA 58.955 50.000 0.00 0.00 43.61 2.90
484 502 1.623811 AGCTTCACCACCGAAGTACAT 59.376 47.619 0.00 0.00 43.61 2.29
485 503 2.038557 AGCTTCACCACCGAAGTACATT 59.961 45.455 0.00 0.00 43.61 2.71
486 504 2.812011 GCTTCACCACCGAAGTACATTT 59.188 45.455 0.00 0.00 43.61 2.32
487 505 3.120304 GCTTCACCACCGAAGTACATTTC 60.120 47.826 0.00 0.00 43.61 2.17
488 506 3.755112 TCACCACCGAAGTACATTTCA 57.245 42.857 0.00 0.00 0.00 2.69
489 507 4.074627 TCACCACCGAAGTACATTTCAA 57.925 40.909 0.00 0.00 0.00 2.69
490 508 4.062293 TCACCACCGAAGTACATTTCAAG 58.938 43.478 0.00 0.00 0.00 3.02
491 509 3.188460 CACCACCGAAGTACATTTCAAGG 59.812 47.826 0.00 0.00 0.00 3.61
492 510 3.181448 ACCACCGAAGTACATTTCAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
493 511 3.188460 CCACCGAAGTACATTTCAAGGTG 59.812 47.826 11.69 11.69 45.24 4.00
494 512 2.812011 ACCGAAGTACATTTCAAGGTGC 59.188 45.455 0.00 0.00 0.00 5.01
495 513 3.074412 CCGAAGTACATTTCAAGGTGCT 58.926 45.455 0.00 0.00 37.24 4.40
496 514 3.502211 CCGAAGTACATTTCAAGGTGCTT 59.498 43.478 7.30 7.30 45.63 3.91
497 515 4.023193 CCGAAGTACATTTCAAGGTGCTTT 60.023 41.667 8.71 0.00 43.65 3.51
498 516 5.180492 CCGAAGTACATTTCAAGGTGCTTTA 59.820 40.000 8.71 0.00 43.65 1.85
499 517 6.307155 CGAAGTACATTTCAAGGTGCTTTAG 58.693 40.000 8.71 4.05 43.65 1.85
500 518 6.147164 CGAAGTACATTTCAAGGTGCTTTAGA 59.853 38.462 8.71 0.00 43.65 2.10
501 519 7.307751 CGAAGTACATTTCAAGGTGCTTTAGAA 60.308 37.037 8.71 0.00 43.65 2.10
502 520 7.817418 AGTACATTTCAAGGTGCTTTAGAAA 57.183 32.000 0.00 0.00 31.80 2.52
503 521 8.232913 AGTACATTTCAAGGTGCTTTAGAAAA 57.767 30.769 0.00 0.00 31.80 2.29
504 522 8.860088 AGTACATTTCAAGGTGCTTTAGAAAAT 58.140 29.630 0.00 0.00 31.80 1.82
505 523 9.476202 GTACATTTCAAGGTGCTTTAGAAAATT 57.524 29.630 0.00 0.00 32.65 1.82
506 524 8.369218 ACATTTCAAGGTGCTTTAGAAAATTG 57.631 30.769 0.00 0.00 32.65 2.32
507 525 6.843069 TTTCAAGGTGCTTTAGAAAATTGC 57.157 33.333 0.00 0.00 0.00 3.56
508 526 5.528043 TCAAGGTGCTTTAGAAAATTGCA 57.472 34.783 0.00 0.00 0.00 4.08
518 536 8.977505 TGCTTTAGAAAATTGCACTAAAATGAC 58.022 29.630 7.59 1.04 36.26 3.06
519 537 8.435430 GCTTTAGAAAATTGCACTAAAATGACC 58.565 33.333 7.59 0.00 36.26 4.02
520 538 8.825667 TTTAGAAAATTGCACTAAAATGACCC 57.174 30.769 4.48 0.00 34.57 4.46
521 539 6.418057 AGAAAATTGCACTAAAATGACCCA 57.582 33.333 0.00 0.00 0.00 4.51
522 540 6.825610 AGAAAATTGCACTAAAATGACCCAA 58.174 32.000 0.00 0.00 0.00 4.12
523 541 7.278875 AGAAAATTGCACTAAAATGACCCAAA 58.721 30.769 0.00 0.00 0.00 3.28
524 542 7.938490 AGAAAATTGCACTAAAATGACCCAAAT 59.062 29.630 0.00 0.00 0.00 2.32
525 543 7.671495 AAATTGCACTAAAATGACCCAAATC 57.329 32.000 0.00 0.00 0.00 2.17
526 544 6.610075 ATTGCACTAAAATGACCCAAATCT 57.390 33.333 0.00 0.00 0.00 2.40
527 545 7.716799 ATTGCACTAAAATGACCCAAATCTA 57.283 32.000 0.00 0.00 0.00 1.98
528 546 6.757897 TGCACTAAAATGACCCAAATCTAG 57.242 37.500 0.00 0.00 0.00 2.43
529 547 6.480763 TGCACTAAAATGACCCAAATCTAGA 58.519 36.000 0.00 0.00 0.00 2.43
530 548 7.118723 TGCACTAAAATGACCCAAATCTAGAT 58.881 34.615 0.00 0.00 0.00 1.98
531 549 7.615365 TGCACTAAAATGACCCAAATCTAGATT 59.385 33.333 12.37 12.37 0.00 2.40
532 550 8.131731 GCACTAAAATGACCCAAATCTAGATTC 58.868 37.037 18.19 6.44 0.00 2.52
533 551 9.177608 CACTAAAATGACCCAAATCTAGATTCA 57.822 33.333 18.19 11.88 0.00 2.57
534 552 9.401058 ACTAAAATGACCCAAATCTAGATTCAG 57.599 33.333 18.19 13.33 0.00 3.02
535 553 6.705863 AAATGACCCAAATCTAGATTCAGC 57.294 37.500 18.19 7.43 0.00 4.26
536 554 5.643421 ATGACCCAAATCTAGATTCAGCT 57.357 39.130 18.19 0.00 0.00 4.24
537 555 5.441718 TGACCCAAATCTAGATTCAGCTT 57.558 39.130 18.19 0.00 0.00 3.74
538 556 5.431765 TGACCCAAATCTAGATTCAGCTTC 58.568 41.667 18.19 11.40 0.00 3.86
539 557 5.045651 TGACCCAAATCTAGATTCAGCTTCA 60.046 40.000 18.19 13.49 0.00 3.02
540 558 5.189180 ACCCAAATCTAGATTCAGCTTCAC 58.811 41.667 18.19 0.00 0.00 3.18
541 559 5.045286 ACCCAAATCTAGATTCAGCTTCACT 60.045 40.000 18.19 0.00 0.00 3.41
557 575 5.762045 GCTTCACTGACAAAGCTAATTTCA 58.238 37.500 3.56 0.00 43.57 2.69
558 576 6.208644 GCTTCACTGACAAAGCTAATTTCAA 58.791 36.000 3.56 0.00 43.57 2.69
559 577 6.697019 GCTTCACTGACAAAGCTAATTTCAAA 59.303 34.615 3.56 0.00 43.57 2.69
560 578 7.383300 GCTTCACTGACAAAGCTAATTTCAAAT 59.617 33.333 3.56 0.00 43.57 2.32
561 579 9.897744 CTTCACTGACAAAGCTAATTTCAAATA 57.102 29.630 0.00 0.00 0.00 1.40
562 580 9.897744 TTCACTGACAAAGCTAATTTCAAATAG 57.102 29.630 0.00 0.00 0.00 1.73
563 581 8.023128 TCACTGACAAAGCTAATTTCAAATAGC 58.977 33.333 0.00 0.00 43.83 2.97
574 592 8.977505 GCTAATTTCAAATAGCTGTTTGTTTCA 58.022 29.630 28.31 12.11 41.02 2.69
577 595 9.768662 AATTTCAAATAGCTGTTTGTTTCAGAT 57.231 25.926 28.31 12.26 39.50 2.90
578 596 9.768662 ATTTCAAATAGCTGTTTGTTTCAGATT 57.231 25.926 28.31 9.30 39.50 2.40
579 597 9.598517 TTTCAAATAGCTGTTTGTTTCAGATTT 57.401 25.926 28.31 6.38 39.50 2.17
580 598 8.801715 TCAAATAGCTGTTTGTTTCAGATTTC 57.198 30.769 28.31 0.00 39.50 2.17
581 599 8.412456 TCAAATAGCTGTTTGTTTCAGATTTCA 58.588 29.630 28.31 8.23 39.50 2.69
582 600 8.697067 CAAATAGCTGTTTGTTTCAGATTTCAG 58.303 33.333 23.49 0.00 35.02 3.02
583 601 7.750229 ATAGCTGTTTGTTTCAGATTTCAGA 57.250 32.000 0.00 0.00 35.20 3.27
584 602 6.645790 AGCTGTTTGTTTCAGATTTCAGAT 57.354 33.333 0.00 0.00 35.20 2.90
585 603 7.047460 AGCTGTTTGTTTCAGATTTCAGATT 57.953 32.000 0.00 0.00 35.20 2.40
586 604 7.144000 AGCTGTTTGTTTCAGATTTCAGATTC 58.856 34.615 0.00 0.00 35.20 2.52
587 605 6.087291 GCTGTTTGTTTCAGATTTCAGATTCG 59.913 38.462 0.00 0.00 35.20 3.34
588 606 6.437928 TGTTTGTTTCAGATTTCAGATTCGG 58.562 36.000 0.00 0.00 0.00 4.30
589 607 4.685169 TGTTTCAGATTTCAGATTCGGC 57.315 40.909 0.00 0.00 0.00 5.54
590 608 4.326826 TGTTTCAGATTTCAGATTCGGCT 58.673 39.130 0.00 0.00 0.00 5.52
591 609 4.761739 TGTTTCAGATTTCAGATTCGGCTT 59.238 37.500 0.00 0.00 0.00 4.35
592 610 5.106555 TGTTTCAGATTTCAGATTCGGCTTC 60.107 40.000 0.00 0.00 0.00 3.86
593 611 4.206477 TCAGATTTCAGATTCGGCTTCA 57.794 40.909 0.00 0.00 0.00 3.02
594 612 3.935203 TCAGATTTCAGATTCGGCTTCAC 59.065 43.478 0.00 0.00 0.00 3.18
595 613 3.064545 CAGATTTCAGATTCGGCTTCACC 59.935 47.826 0.00 0.00 0.00 4.02
605 623 3.981308 GCTTCACCGCCAAAGCTA 58.019 55.556 6.63 0.00 43.57 3.32
606 624 2.253513 GCTTCACCGCCAAAGCTAA 58.746 52.632 6.63 0.00 43.57 3.09
607 625 0.811281 GCTTCACCGCCAAAGCTAAT 59.189 50.000 6.63 0.00 43.57 1.73
608 626 1.202348 GCTTCACCGCCAAAGCTAATT 59.798 47.619 6.63 0.00 43.57 1.40
609 627 2.352715 GCTTCACCGCCAAAGCTAATTT 60.353 45.455 6.63 0.00 43.57 1.82
610 628 3.244976 CTTCACCGCCAAAGCTAATTTG 58.755 45.455 0.00 0.00 46.62 2.32
620 638 5.665916 CAAAGCTAATTTGGTCCCAGAAT 57.334 39.130 0.00 0.00 43.88 2.40
621 639 5.654497 CAAAGCTAATTTGGTCCCAGAATC 58.346 41.667 0.00 0.00 43.88 2.52
622 640 3.903467 AGCTAATTTGGTCCCAGAATCC 58.097 45.455 0.00 0.00 0.00 3.01
623 641 2.618709 GCTAATTTGGTCCCAGAATCCG 59.381 50.000 0.00 0.00 0.00 4.18
624 642 2.143876 AATTTGGTCCCAGAATCCGG 57.856 50.000 0.00 0.00 0.00 5.14
625 643 1.295020 ATTTGGTCCCAGAATCCGGA 58.705 50.000 6.61 6.61 0.00 5.14
626 644 1.068948 TTTGGTCCCAGAATCCGGAA 58.931 50.000 9.01 0.00 0.00 4.30
627 645 0.326927 TTGGTCCCAGAATCCGGAAC 59.673 55.000 9.01 6.01 36.31 3.62
628 646 0.838554 TGGTCCCAGAATCCGGAACA 60.839 55.000 9.01 0.95 43.69 3.18
629 647 0.326927 GGTCCCAGAATCCGGAACAA 59.673 55.000 9.01 0.00 35.79 2.83
630 648 1.271707 GGTCCCAGAATCCGGAACAAA 60.272 52.381 9.01 0.00 35.79 2.83
631 649 1.810755 GTCCCAGAATCCGGAACAAAC 59.189 52.381 9.01 0.00 0.00 2.93
632 650 1.422024 TCCCAGAATCCGGAACAAACA 59.578 47.619 9.01 0.00 0.00 2.83
633 651 1.812571 CCCAGAATCCGGAACAAACAG 59.187 52.381 9.01 0.00 0.00 3.16
634 652 1.812571 CCAGAATCCGGAACAAACAGG 59.187 52.381 9.01 0.23 0.00 4.00
635 653 1.812571 CAGAATCCGGAACAAACAGGG 59.187 52.381 9.01 0.00 0.00 4.45
636 654 0.526211 GAATCCGGAACAAACAGGGC 59.474 55.000 9.01 0.00 0.00 5.19
637 655 0.898326 AATCCGGAACAAACAGGGCC 60.898 55.000 9.01 0.00 0.00 5.80
642 660 0.404426 GGAACAAACAGGGCCCTACT 59.596 55.000 28.13 12.17 0.00 2.57
684 703 2.823154 TGGAATTGGGACGTGGAAAATC 59.177 45.455 0.00 0.00 0.00 2.17
687 706 2.940994 TTGGGACGTGGAAAATCAGA 57.059 45.000 0.00 0.00 0.00 3.27
690 709 1.804748 GGGACGTGGAAAATCAGACAC 59.195 52.381 0.00 0.00 0.00 3.67
740 766 6.715280 TGCTCTGAAAGGTCTTGATAGAAAT 58.285 36.000 0.00 0.00 30.65 2.17
855 1190 2.028930 CCTCGTGTAAAAGAGCCTCTGT 60.029 50.000 0.00 0.00 33.39 3.41
856 1191 3.555168 CCTCGTGTAAAAGAGCCTCTGTT 60.555 47.826 2.07 2.07 33.39 3.16
857 1192 4.321750 CCTCGTGTAAAAGAGCCTCTGTTA 60.322 45.833 0.00 0.00 33.39 2.41
858 1193 5.204409 TCGTGTAAAAGAGCCTCTGTTAA 57.796 39.130 5.92 0.00 28.66 2.01
902 1237 0.244994 ACTGAAGCAGAGCTACACGG 59.755 55.000 0.82 0.00 38.25 4.94
962 1297 2.754658 TCCGCTTCTCCTCCGTCC 60.755 66.667 0.00 0.00 0.00 4.79
995 1330 1.817099 GCATTCTCCCCTCGCACTG 60.817 63.158 0.00 0.00 0.00 3.66
1045 1380 1.819229 CTGATCTCCACCACCTCGG 59.181 63.158 0.00 0.00 42.50 4.63
1192 1527 2.888447 CGGAGGGGCATGAGGATCC 61.888 68.421 2.48 2.48 0.00 3.36
1277 1612 1.202440 TGTTCTTGGCGTCGTAAGTGT 60.202 47.619 9.95 0.00 39.48 3.55
1355 1693 6.472686 AAATCGAGTGCCTAATCTAAGAGT 57.527 37.500 0.00 0.00 0.00 3.24
1367 1705 9.047371 GCCTAATCTAAGAGTAAAGAAATGTCC 57.953 37.037 0.00 0.00 0.00 4.02
1376 1714 7.584987 AGAGTAAAGAAATGTCCATTGAAACG 58.415 34.615 0.00 0.00 0.00 3.60
1393 1731 9.599322 CATTGAAACGCATATTACCTAGAAATC 57.401 33.333 0.00 0.00 0.00 2.17
1437 1778 6.683974 TGCTTGCTATTTCTGAATAAGTCC 57.316 37.500 0.00 0.00 0.00 3.85
1623 1984 1.272313 ACGGTAGGAGCCTTCAGTACA 60.272 52.381 0.00 0.00 0.00 2.90
1630 1991 4.390264 AGGAGCCTTCAGTACAAGTTTTC 58.610 43.478 0.00 0.00 0.00 2.29
1639 2052 5.117584 TCAGTACAAGTTTTCGGTTGCTTA 58.882 37.500 0.00 0.00 0.00 3.09
1640 2053 5.761234 TCAGTACAAGTTTTCGGTTGCTTAT 59.239 36.000 0.00 0.00 0.00 1.73
1641 2054 5.851177 CAGTACAAGTTTTCGGTTGCTTATG 59.149 40.000 0.00 0.00 0.00 1.90
1642 2055 4.237349 ACAAGTTTTCGGTTGCTTATGG 57.763 40.909 0.00 0.00 0.00 2.74
1643 2056 3.886505 ACAAGTTTTCGGTTGCTTATGGA 59.113 39.130 0.00 0.00 0.00 3.41
1644 2057 4.522789 ACAAGTTTTCGGTTGCTTATGGAT 59.477 37.500 0.00 0.00 0.00 3.41
1645 2058 4.701956 AGTTTTCGGTTGCTTATGGATG 57.298 40.909 0.00 0.00 0.00 3.51
1646 2059 3.119495 AGTTTTCGGTTGCTTATGGATGC 60.119 43.478 0.00 0.00 0.00 3.91
1647 2060 2.121291 TTCGGTTGCTTATGGATGCA 57.879 45.000 0.00 0.00 37.42 3.96
1648 2061 2.121291 TCGGTTGCTTATGGATGCAA 57.879 45.000 0.00 0.00 45.40 4.08
1654 2067 3.624326 TGCTTATGGATGCAAATACGC 57.376 42.857 0.00 0.00 36.15 4.42
1655 2068 3.379688 TTGCTTATGGATGCAAATACGCA 59.620 39.130 11.90 11.90 44.75 5.24
1656 2069 3.379688 TGCTTATGGATGCAAATACGCAA 59.620 39.130 12.96 2.36 46.87 4.85
1657 2070 3.730715 GCTTATGGATGCAAATACGCAAC 59.269 43.478 0.00 0.00 46.87 4.17
1658 2071 4.498009 GCTTATGGATGCAAATACGCAACT 60.498 41.667 0.00 0.00 46.87 3.16
1659 2072 2.917701 TGGATGCAAATACGCAACTG 57.082 45.000 0.00 0.00 46.87 3.16
1660 2073 2.158559 TGGATGCAAATACGCAACTGT 58.841 42.857 0.00 0.00 46.87 3.55
1661 2074 2.556189 TGGATGCAAATACGCAACTGTT 59.444 40.909 0.00 0.00 46.87 3.16
1662 2075 3.171277 GGATGCAAATACGCAACTGTTC 58.829 45.455 0.00 0.00 46.87 3.18
1663 2076 3.119849 GGATGCAAATACGCAACTGTTCT 60.120 43.478 0.00 0.00 46.87 3.01
1664 2077 3.266541 TGCAAATACGCAACTGTTCTG 57.733 42.857 0.00 0.00 39.45 3.02
1665 2078 2.031245 TGCAAATACGCAACTGTTCTGG 60.031 45.455 0.00 0.00 39.45 3.86
1666 2079 2.225491 GCAAATACGCAACTGTTCTGGA 59.775 45.455 0.00 0.00 0.00 3.86
1667 2080 3.304391 GCAAATACGCAACTGTTCTGGAA 60.304 43.478 0.00 0.00 0.00 3.53
1668 2081 4.466828 CAAATACGCAACTGTTCTGGAAG 58.533 43.478 0.00 0.00 0.00 3.46
1669 2082 3.678056 ATACGCAACTGTTCTGGAAGA 57.322 42.857 0.00 0.00 44.68 2.87
1670 2083 2.550830 ACGCAACTGTTCTGGAAGAT 57.449 45.000 0.00 0.00 46.36 2.40
1671 2084 2.146342 ACGCAACTGTTCTGGAAGATG 58.854 47.619 0.00 0.00 46.36 2.90
1672 2085 1.135859 CGCAACTGTTCTGGAAGATGC 60.136 52.381 0.00 0.00 46.36 3.91
1673 2086 2.157738 GCAACTGTTCTGGAAGATGCT 58.842 47.619 0.00 0.00 46.36 3.79
1674 2087 2.555757 GCAACTGTTCTGGAAGATGCTT 59.444 45.455 0.00 0.00 46.36 3.91
1675 2088 3.611057 GCAACTGTTCTGGAAGATGCTTG 60.611 47.826 0.00 0.00 46.36 4.01
1676 2089 3.777106 ACTGTTCTGGAAGATGCTTGA 57.223 42.857 0.00 0.00 46.36 3.02
1677 2090 4.298103 ACTGTTCTGGAAGATGCTTGAT 57.702 40.909 0.00 0.00 46.36 2.57
1678 2091 4.660168 ACTGTTCTGGAAGATGCTTGATT 58.340 39.130 0.00 0.00 46.36 2.57
1679 2092 5.075493 ACTGTTCTGGAAGATGCTTGATTT 58.925 37.500 0.00 0.00 46.36 2.17
1680 2093 5.537674 ACTGTTCTGGAAGATGCTTGATTTT 59.462 36.000 0.00 0.00 46.36 1.82
1681 2094 6.017400 TGTTCTGGAAGATGCTTGATTTTC 57.983 37.500 0.00 0.00 46.36 2.29
1684 2097 4.460382 TCTGGAAGATGCTTGATTTTCCAC 59.540 41.667 4.03 0.00 45.91 4.02
1691 2104 7.001099 AGATGCTTGATTTTCCACTGAAATT 57.999 32.000 0.00 0.00 40.08 1.82
1696 2109 6.703165 GCTTGATTTTCCACTGAAATTGTCTT 59.297 34.615 0.00 0.00 40.08 3.01
1699 2112 6.479660 TGATTTTCCACTGAAATTGTCTTTGC 59.520 34.615 0.00 0.00 40.08 3.68
1813 2226 2.032071 CGGCGACCAACCCTTTCT 59.968 61.111 0.00 0.00 0.00 2.52
1838 2251 1.337167 TGACAGTGCAGTCAAGGATCG 60.337 52.381 6.33 0.00 44.92 3.69
1839 2252 0.671781 ACAGTGCAGTCAAGGATCGC 60.672 55.000 0.00 0.00 0.00 4.58
1863 2276 3.005050 TGTTCGTCGATGAGTTTACCTGT 59.995 43.478 7.51 0.00 0.00 4.00
2178 2601 5.757320 CACTATATCCAAGTCCTTGCAAGAG 59.243 44.000 28.05 17.09 39.16 2.85
2376 2821 7.169308 GTCAATGTAAGACGACTTTCTTTCAGA 59.831 37.037 5.28 0.00 36.64 3.27
2390 2835 8.643324 ACTTTCTTTCAGACATACAGTTCTACT 58.357 33.333 0.00 0.00 0.00 2.57
2470 2915 9.853555 TTTGGTAGCAAAATGTGTATTATTCTG 57.146 29.630 17.34 0.00 0.00 3.02
2472 2917 9.237187 TGGTAGCAAAATGTGTATTATTCTGAA 57.763 29.630 0.00 0.00 0.00 3.02
2519 2964 6.319141 AGAAAATTCCTGTGTTTACTCTGC 57.681 37.500 0.00 0.00 0.00 4.26
2530 2975 9.774742 CCTGTGTTTACTCTGCTTTATTATTTC 57.225 33.333 0.00 0.00 0.00 2.17
2622 3067 2.234300 TGGGAGTTTCAGTCAACGTC 57.766 50.000 0.00 0.00 0.00 4.34
2688 3133 7.152645 TGCTTATCTAATTTACTCCCTAAGCG 58.847 38.462 0.00 0.00 41.52 4.68
2750 3195 5.163652 GGCTTTTGGCTACCATAGTACAAAG 60.164 44.000 0.00 3.08 42.31 2.77
2773 3218 5.126061 AGTGCAGTTCAGTTCTGTTCAAATT 59.874 36.000 0.00 0.00 35.60 1.82
2780 3225 2.293399 AGTTCTGTTCAAATTCACGGGC 59.707 45.455 0.00 0.00 0.00 6.13
2872 3317 1.491563 CGAGTTGGGAAAAGCGACG 59.508 57.895 0.00 0.00 0.00 5.12
2972 3450 7.279615 TGTTTCCCAATGTCATATATTCGACT 58.720 34.615 5.17 0.00 33.18 4.18
2973 3451 7.226523 TGTTTCCCAATGTCATATATTCGACTG 59.773 37.037 5.17 0.00 33.18 3.51
3113 3592 2.412591 CCTTGGAGTGATATCTGGGGT 58.587 52.381 3.98 0.00 0.00 4.95
3162 3641 9.289303 CTGGTAATGTTTCTGCAAATAACATAC 57.711 33.333 16.48 14.31 40.54 2.39
3253 3732 6.978343 TGAATTTGTATCACTTTCCTACGG 57.022 37.500 0.00 0.00 0.00 4.02
3312 3791 5.060662 TCTCTTACTGTCTGTTCATTCCG 57.939 43.478 0.00 0.00 0.00 4.30
3313 3792 4.082190 TCTCTTACTGTCTGTTCATTCCGG 60.082 45.833 0.00 0.00 0.00 5.14
3319 3798 1.940613 GTCTGTTCATTCCGGTATGGC 59.059 52.381 19.62 13.52 37.80 4.40
3501 3980 3.509575 AGAGTAGCAACAGAACAGAGGAG 59.490 47.826 0.00 0.00 0.00 3.69
3530 4009 5.378230 TCTTGATTCCTGCTGATACCATT 57.622 39.130 0.00 0.00 0.00 3.16
3531 4010 5.759059 TCTTGATTCCTGCTGATACCATTT 58.241 37.500 0.00 0.00 0.00 2.32
3532 4011 5.591472 TCTTGATTCCTGCTGATACCATTTG 59.409 40.000 0.00 0.00 0.00 2.32
3533 4012 5.114764 TGATTCCTGCTGATACCATTTGA 57.885 39.130 0.00 0.00 0.00 2.69
3534 4013 5.698104 TGATTCCTGCTGATACCATTTGAT 58.302 37.500 0.00 0.00 0.00 2.57
3535 4014 5.766670 TGATTCCTGCTGATACCATTTGATC 59.233 40.000 0.00 0.00 0.00 2.92
3536 4015 4.776435 TCCTGCTGATACCATTTGATCA 57.224 40.909 0.00 0.00 0.00 2.92
3601 4094 4.148128 ACCAAGAAGATGTAGCATCCTG 57.852 45.455 5.59 0.15 0.00 3.86
3918 8765 7.307493 TGCACATCTTCTACACAATAATGAC 57.693 36.000 0.00 0.00 0.00 3.06
3931 8778 4.761739 ACAATAATGACCACAGGTTCACAG 59.238 41.667 0.00 0.00 35.25 3.66
3932 8779 2.276732 AATGACCACAGGTTCACAGG 57.723 50.000 0.00 0.00 35.25 4.00
4099 13293 5.010933 TGAGGATCGAACTGAGGATATACC 58.989 45.833 0.00 0.00 38.61 2.73
4176 13371 2.954318 AGGCCATTGCAATGTATGAGTC 59.046 45.455 31.87 20.31 40.13 3.36
4177 13372 2.287188 GGCCATTGCAATGTATGAGTCG 60.287 50.000 31.87 18.03 40.13 4.18
4178 13373 2.355756 GCCATTGCAATGTATGAGTCGT 59.644 45.455 31.87 0.00 37.47 4.34
4179 13374 3.546815 GCCATTGCAATGTATGAGTCGTC 60.547 47.826 31.87 11.03 37.47 4.20
4187 13382 1.538075 TGTATGAGTCGTCGTCAAGCA 59.462 47.619 0.00 0.00 0.00 3.91
4194 13389 3.386486 AGTCGTCGTCAAGCACATTTTA 58.614 40.909 0.00 0.00 0.00 1.52
4195 13390 3.183775 AGTCGTCGTCAAGCACATTTTAC 59.816 43.478 0.00 0.00 0.00 2.01
4196 13391 2.477375 TCGTCGTCAAGCACATTTTACC 59.523 45.455 0.00 0.00 0.00 2.85
4199 13394 3.250040 GTCGTCAAGCACATTTTACCAGT 59.750 43.478 0.00 0.00 0.00 4.00
4205 13410 4.742438 AGCACATTTTACCAGTTACACG 57.258 40.909 0.00 0.00 0.00 4.49
4251 13457 5.392767 TCTAAGCAATCAGTCTTCTTCGT 57.607 39.130 0.00 0.00 0.00 3.85
4253 13459 6.223852 TCTAAGCAATCAGTCTTCTTCGTTT 58.776 36.000 0.00 0.00 0.00 3.60
4331 13541 5.186021 CAGTACAACTCAGGGTAGACAGAAT 59.814 44.000 0.00 0.00 0.00 2.40
4335 13545 2.093973 ACTCAGGGTAGACAGAATTGCG 60.094 50.000 0.00 0.00 0.00 4.85
4347 13557 7.849804 AGACAGAATTGCGATTTTACTGTAT 57.150 32.000 15.84 11.87 37.27 2.29
4447 15700 9.605955 CATGATTCTAGTAGTGAAGATTCTACG 57.394 37.037 0.00 0.00 40.69 3.51
4478 15731 4.554036 GCAGGGGTGCTCCGATCC 62.554 72.222 0.00 0.00 36.01 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.050619 CCTAGCTAATAAAGTGTCGCCG 58.949 50.000 0.00 0.00 0.00 6.46
1 2 4.056092 ACCTAGCTAATAAAGTGTCGCC 57.944 45.455 0.00 0.00 0.00 5.54
16 17 0.384669 CTACGGCCACACTACCTAGC 59.615 60.000 2.24 0.00 0.00 3.42
19 20 1.684734 CCCTACGGCCACACTACCT 60.685 63.158 2.24 0.00 0.00 3.08
33 34 3.036091 CCGAGGAAAATCCACTACCCTA 58.964 50.000 0.00 0.00 39.61 3.53
36 37 1.558294 ACCCGAGGAAAATCCACTACC 59.442 52.381 0.00 0.00 39.61 3.18
44 45 5.382616 AGTTGAGTAAAACCCGAGGAAAAT 58.617 37.500 0.00 0.00 0.00 1.82
50 51 5.404946 TCGATTAGTTGAGTAAAACCCGAG 58.595 41.667 0.00 0.00 0.00 4.63
66 67 6.636850 CCAAAAACCTCACAAAACTCGATTAG 59.363 38.462 0.00 0.00 0.00 1.73
72 73 5.929415 TCAAACCAAAAACCTCACAAAACTC 59.071 36.000 0.00 0.00 0.00 3.01
79 80 7.333174 TGAGAAAAATCAAACCAAAAACCTCAC 59.667 33.333 0.00 0.00 0.00 3.51
110 111 5.983720 CACTCGAAGGAGAAAACTTGTCTAA 59.016 40.000 0.00 0.00 43.27 2.10
115 116 5.734855 TTTCACTCGAAGGAGAAAACTTG 57.265 39.130 0.00 0.00 43.27 3.16
116 117 6.944234 ATTTTCACTCGAAGGAGAAAACTT 57.056 33.333 10.61 0.00 43.27 2.66
125 126 6.313164 GGGTTTCTACTATTTTCACTCGAAGG 59.687 42.308 0.00 0.00 31.28 3.46
135 136 7.557719 CAGATGACATGGGGTTTCTACTATTTT 59.442 37.037 0.00 0.00 0.00 1.82
155 156 3.744238 TTGACGAACCTTGTCAGATGA 57.256 42.857 0.00 0.00 46.17 2.92
164 166 4.803613 GTGAAATTGCTTTTGACGAACCTT 59.196 37.500 0.00 0.00 0.00 3.50
166 168 4.109050 TGTGAAATTGCTTTTGACGAACC 58.891 39.130 0.00 0.00 34.53 3.62
178 180 2.070783 CTGTGCCCAATGTGAAATTGC 58.929 47.619 0.00 0.00 0.00 3.56
186 188 0.405198 TGACCATCTGTGCCCAATGT 59.595 50.000 0.00 0.00 0.00 2.71
198 200 9.385902 CAATTTTCGTAACATGATATGACCATC 57.614 33.333 0.00 0.00 0.00 3.51
210 212 3.500680 ACTGGTCGCAATTTTCGTAACAT 59.499 39.130 0.00 0.00 0.00 2.71
254 256 2.351276 GAAGGGTGGCATGACGGT 59.649 61.111 0.00 0.00 0.00 4.83
266 268 4.609866 AATAAGGAGGAAAAGGGAAGGG 57.390 45.455 0.00 0.00 0.00 3.95
288 305 2.173782 TGGGGTGAAACTTTGTGCTCTA 59.826 45.455 0.00 0.00 36.74 2.43
342 359 7.703621 TGAGCTTGTTCTTTCTTTGAATTTCTG 59.296 33.333 0.00 0.00 0.00 3.02
343 360 7.775120 TGAGCTTGTTCTTTCTTTGAATTTCT 58.225 30.769 0.00 0.00 0.00 2.52
351 369 7.196331 GTGTTACATGAGCTTGTTCTTTCTTT 58.804 34.615 0.00 0.00 0.00 2.52
391 409 3.123050 CCAAAGCTGTAACAAACAAGGC 58.877 45.455 0.00 0.00 37.74 4.35
392 410 4.385358 ACCAAAGCTGTAACAAACAAGG 57.615 40.909 0.00 0.00 37.74 3.61
395 413 3.764434 TCCAACCAAAGCTGTAACAAACA 59.236 39.130 0.00 0.00 36.42 2.83
396 414 4.379339 TCCAACCAAAGCTGTAACAAAC 57.621 40.909 0.00 0.00 0.00 2.93
397 415 5.606348 AATCCAACCAAAGCTGTAACAAA 57.394 34.783 0.00 0.00 0.00 2.83
398 416 5.606348 AAATCCAACCAAAGCTGTAACAA 57.394 34.783 0.00 0.00 0.00 2.83
399 417 5.606348 AAAATCCAACCAAAGCTGTAACA 57.394 34.783 0.00 0.00 0.00 2.41
400 418 7.870445 TGATTAAAATCCAACCAAAGCTGTAAC 59.130 33.333 0.00 0.00 34.50 2.50
401 419 7.957002 TGATTAAAATCCAACCAAAGCTGTAA 58.043 30.769 0.00 0.00 34.50 2.41
402 420 7.531857 TGATTAAAATCCAACCAAAGCTGTA 57.468 32.000 0.00 0.00 34.50 2.74
403 421 6.418057 TGATTAAAATCCAACCAAAGCTGT 57.582 33.333 0.00 0.00 34.50 4.40
404 422 6.536224 GGATGATTAAAATCCAACCAAAGCTG 59.464 38.462 13.24 0.00 42.79 4.24
405 423 6.627953 CGGATGATTAAAATCCAACCAAAGCT 60.628 38.462 16.66 0.00 43.33 3.74
406 424 5.519927 CGGATGATTAAAATCCAACCAAAGC 59.480 40.000 16.66 0.00 43.33 3.51
407 425 6.531240 CACGGATGATTAAAATCCAACCAAAG 59.469 38.462 16.66 5.23 43.33 2.77
408 426 6.393990 CACGGATGATTAAAATCCAACCAAA 58.606 36.000 16.66 0.00 43.33 3.28
409 427 5.105554 CCACGGATGATTAAAATCCAACCAA 60.106 40.000 16.66 0.00 43.33 3.67
410 428 4.400884 CCACGGATGATTAAAATCCAACCA 59.599 41.667 16.66 0.00 43.33 3.67
411 429 4.642885 TCCACGGATGATTAAAATCCAACC 59.357 41.667 16.66 4.78 43.33 3.77
412 430 5.828299 TCCACGGATGATTAAAATCCAAC 57.172 39.130 16.66 0.00 43.33 3.77
413 431 6.238621 CGAATCCACGGATGATTAAAATCCAA 60.239 38.462 16.66 4.07 43.33 3.53
414 432 5.238432 CGAATCCACGGATGATTAAAATCCA 59.762 40.000 16.66 2.55 43.33 3.41
415 433 5.689819 CGAATCCACGGATGATTAAAATCC 58.310 41.667 0.00 9.52 40.30 3.01
416 434 5.049405 AGCGAATCCACGGATGATTAAAATC 60.049 40.000 0.00 0.00 34.70 2.17
417 435 4.821805 AGCGAATCCACGGATGATTAAAAT 59.178 37.500 0.00 0.00 34.70 1.82
418 436 4.196193 AGCGAATCCACGGATGATTAAAA 58.804 39.130 0.00 0.00 34.70 1.52
419 437 3.804036 AGCGAATCCACGGATGATTAAA 58.196 40.909 0.00 0.00 34.70 1.52
420 438 3.469008 AGCGAATCCACGGATGATTAA 57.531 42.857 0.00 0.00 34.70 1.40
421 439 3.181470 TGAAGCGAATCCACGGATGATTA 60.181 43.478 0.00 0.00 34.70 1.75
422 440 2.213499 GAAGCGAATCCACGGATGATT 58.787 47.619 0.00 0.00 34.70 2.57
423 441 1.138859 TGAAGCGAATCCACGGATGAT 59.861 47.619 0.00 0.00 34.70 2.45
424 442 0.534873 TGAAGCGAATCCACGGATGA 59.465 50.000 0.00 0.00 34.70 2.92
425 443 0.933097 CTGAAGCGAATCCACGGATG 59.067 55.000 0.00 0.00 34.70 3.51
426 444 0.537188 ACTGAAGCGAATCCACGGAT 59.463 50.000 0.00 0.00 36.23 4.18
427 445 0.389817 CACTGAAGCGAATCCACGGA 60.390 55.000 0.00 0.00 0.00 4.69
428 446 1.970917 GCACTGAAGCGAATCCACGG 61.971 60.000 0.00 0.00 0.00 4.94
429 447 1.421485 GCACTGAAGCGAATCCACG 59.579 57.895 0.00 0.00 0.00 4.94
430 448 1.796796 GGCACTGAAGCGAATCCAC 59.203 57.895 0.00 0.00 34.64 4.02
431 449 1.741401 CGGCACTGAAGCGAATCCA 60.741 57.895 0.00 0.00 34.64 3.41
432 450 1.019278 TTCGGCACTGAAGCGAATCC 61.019 55.000 0.00 0.00 34.64 3.01
433 451 0.371645 CTTCGGCACTGAAGCGAATC 59.628 55.000 6.30 0.00 38.98 2.52
434 452 2.460330 CTTCGGCACTGAAGCGAAT 58.540 52.632 6.30 0.00 38.98 3.34
435 453 3.951332 CTTCGGCACTGAAGCGAA 58.049 55.556 6.30 0.00 38.98 4.70
439 457 1.129998 CAATCAGCTTCGGCACTGAAG 59.870 52.381 13.77 13.77 45.49 3.02
440 458 1.159285 CAATCAGCTTCGGCACTGAA 58.841 50.000 6.33 0.00 45.49 3.02
441 459 0.321346 TCAATCAGCTTCGGCACTGA 59.679 50.000 4.97 4.97 46.34 3.41
442 460 1.159285 TTCAATCAGCTTCGGCACTG 58.841 50.000 0.00 0.00 44.74 3.66
443 461 2.012673 GATTCAATCAGCTTCGGCACT 58.987 47.619 0.00 0.00 44.74 4.40
444 462 1.739466 TGATTCAATCAGCTTCGGCAC 59.261 47.619 0.00 0.00 44.74 5.01
445 463 2.112380 TGATTCAATCAGCTTCGGCA 57.888 45.000 0.00 0.00 44.74 5.69
458 476 0.684535 TCGGTGGTGAAGCTGATTCA 59.315 50.000 3.91 3.91 45.79 2.57
459 477 1.734465 CTTCGGTGGTGAAGCTGATTC 59.266 52.381 0.00 0.00 38.98 2.52
460 478 1.813513 CTTCGGTGGTGAAGCTGATT 58.186 50.000 0.00 0.00 38.98 2.57
461 479 3.540211 CTTCGGTGGTGAAGCTGAT 57.460 52.632 0.00 0.00 38.98 2.90
467 485 4.074627 TGAAATGTACTTCGGTGGTGAA 57.925 40.909 0.00 0.00 0.00 3.18
468 486 3.755112 TGAAATGTACTTCGGTGGTGA 57.245 42.857 0.00 0.00 0.00 4.02
469 487 3.188460 CCTTGAAATGTACTTCGGTGGTG 59.812 47.826 0.00 0.00 0.00 4.17
470 488 3.181448 ACCTTGAAATGTACTTCGGTGGT 60.181 43.478 0.00 0.00 0.00 4.16
471 489 3.188460 CACCTTGAAATGTACTTCGGTGG 59.812 47.826 11.17 6.56 35.14 4.61
472 490 3.364964 GCACCTTGAAATGTACTTCGGTG 60.365 47.826 13.24 13.24 38.68 4.94
473 491 2.812011 GCACCTTGAAATGTACTTCGGT 59.188 45.455 0.00 0.00 0.00 4.69
474 492 3.074412 AGCACCTTGAAATGTACTTCGG 58.926 45.455 0.00 0.00 0.00 4.30
475 493 4.749245 AAGCACCTTGAAATGTACTTCG 57.251 40.909 0.00 0.00 0.00 3.79
476 494 7.435068 TCTAAAGCACCTTGAAATGTACTTC 57.565 36.000 0.00 0.00 0.00 3.01
477 495 7.817418 TTCTAAAGCACCTTGAAATGTACTT 57.183 32.000 0.00 0.00 0.00 2.24
478 496 7.817418 TTTCTAAAGCACCTTGAAATGTACT 57.183 32.000 0.00 0.00 0.00 2.73
479 497 9.476202 AATTTTCTAAAGCACCTTGAAATGTAC 57.524 29.630 0.00 0.00 0.00 2.90
480 498 9.474920 CAATTTTCTAAAGCACCTTGAAATGTA 57.525 29.630 0.00 0.00 0.00 2.29
481 499 7.041848 GCAATTTTCTAAAGCACCTTGAAATGT 60.042 33.333 0.00 0.00 0.00 2.71
482 500 7.041916 TGCAATTTTCTAAAGCACCTTGAAATG 60.042 33.333 0.00 0.00 0.00 2.32
483 501 6.991531 TGCAATTTTCTAAAGCACCTTGAAAT 59.008 30.769 0.00 0.00 0.00 2.17
484 502 6.344500 TGCAATTTTCTAAAGCACCTTGAAA 58.656 32.000 0.00 0.00 0.00 2.69
485 503 5.911752 TGCAATTTTCTAAAGCACCTTGAA 58.088 33.333 0.00 0.00 0.00 2.69
486 504 5.528043 TGCAATTTTCTAAAGCACCTTGA 57.472 34.783 0.00 0.00 0.00 3.02
492 510 8.977505 GTCATTTTAGTGCAATTTTCTAAAGCA 58.022 29.630 0.00 0.00 35.85 3.91
493 511 8.435430 GGTCATTTTAGTGCAATTTTCTAAAGC 58.565 33.333 0.00 0.00 35.85 3.51
494 512 8.925700 GGGTCATTTTAGTGCAATTTTCTAAAG 58.074 33.333 0.00 0.00 35.85 1.85
495 513 8.424918 TGGGTCATTTTAGTGCAATTTTCTAAA 58.575 29.630 0.00 0.00 33.64 1.85
496 514 7.957002 TGGGTCATTTTAGTGCAATTTTCTAA 58.043 30.769 0.00 0.00 0.00 2.10
497 515 7.531857 TGGGTCATTTTAGTGCAATTTTCTA 57.468 32.000 0.00 0.00 0.00 2.10
498 516 6.418057 TGGGTCATTTTAGTGCAATTTTCT 57.582 33.333 0.00 0.00 0.00 2.52
499 517 7.489574 TTTGGGTCATTTTAGTGCAATTTTC 57.510 32.000 0.00 0.00 0.00 2.29
500 518 7.938490 AGATTTGGGTCATTTTAGTGCAATTTT 59.062 29.630 0.00 0.00 0.00 1.82
501 519 7.452562 AGATTTGGGTCATTTTAGTGCAATTT 58.547 30.769 0.00 0.00 0.00 1.82
502 520 7.008021 AGATTTGGGTCATTTTAGTGCAATT 57.992 32.000 0.00 0.00 0.00 2.32
503 521 6.610075 AGATTTGGGTCATTTTAGTGCAAT 57.390 33.333 0.00 0.00 0.00 3.56
504 522 6.945435 TCTAGATTTGGGTCATTTTAGTGCAA 59.055 34.615 0.00 0.00 0.00 4.08
505 523 6.480763 TCTAGATTTGGGTCATTTTAGTGCA 58.519 36.000 0.00 0.00 0.00 4.57
506 524 7.573968 ATCTAGATTTGGGTCATTTTAGTGC 57.426 36.000 0.00 0.00 0.00 4.40
507 525 9.177608 TGAATCTAGATTTGGGTCATTTTAGTG 57.822 33.333 18.88 0.00 0.00 2.74
508 526 9.401058 CTGAATCTAGATTTGGGTCATTTTAGT 57.599 33.333 18.88 0.00 0.00 2.24
509 527 8.348507 GCTGAATCTAGATTTGGGTCATTTTAG 58.651 37.037 18.88 1.75 0.00 1.85
510 528 8.055181 AGCTGAATCTAGATTTGGGTCATTTTA 58.945 33.333 18.88 0.00 0.00 1.52
511 529 6.894103 AGCTGAATCTAGATTTGGGTCATTTT 59.106 34.615 18.88 0.00 0.00 1.82
512 530 6.430007 AGCTGAATCTAGATTTGGGTCATTT 58.570 36.000 18.88 1.69 0.00 2.32
513 531 6.011122 AGCTGAATCTAGATTTGGGTCATT 57.989 37.500 18.88 2.00 0.00 2.57
514 532 5.643421 AGCTGAATCTAGATTTGGGTCAT 57.357 39.130 18.88 0.00 0.00 3.06
515 533 5.045651 TGAAGCTGAATCTAGATTTGGGTCA 60.046 40.000 18.88 14.83 0.00 4.02
516 534 5.295540 GTGAAGCTGAATCTAGATTTGGGTC 59.704 44.000 18.88 12.80 0.00 4.46
517 535 5.045286 AGTGAAGCTGAATCTAGATTTGGGT 60.045 40.000 18.88 15.83 0.00 4.51
518 536 5.435291 AGTGAAGCTGAATCTAGATTTGGG 58.565 41.667 18.88 12.54 0.00 4.12
534 552 5.762045 TGAAATTAGCTTTGTCAGTGAAGC 58.238 37.500 7.13 7.13 46.57 3.86
535 553 8.807667 ATTTGAAATTAGCTTTGTCAGTGAAG 57.192 30.769 0.00 0.00 0.00 3.02
536 554 9.897744 CTATTTGAAATTAGCTTTGTCAGTGAA 57.102 29.630 0.00 0.00 0.00 3.18
537 555 8.023128 GCTATTTGAAATTAGCTTTGTCAGTGA 58.977 33.333 0.00 0.00 38.22 3.41
538 556 8.025445 AGCTATTTGAAATTAGCTTTGTCAGTG 58.975 33.333 11.75 0.00 46.90 3.66
539 557 8.025445 CAGCTATTTGAAATTAGCTTTGTCAGT 58.975 33.333 13.96 0.00 46.90 3.41
540 558 8.025445 ACAGCTATTTGAAATTAGCTTTGTCAG 58.975 33.333 13.96 7.18 46.90 3.51
541 559 7.885297 ACAGCTATTTGAAATTAGCTTTGTCA 58.115 30.769 13.96 0.00 46.90 3.58
542 560 8.748380 AACAGCTATTTGAAATTAGCTTTGTC 57.252 30.769 13.96 0.00 46.90 3.18
543 561 8.981647 CAAACAGCTATTTGAAATTAGCTTTGT 58.018 29.630 12.18 9.81 46.90 2.83
544 562 8.981647 ACAAACAGCTATTTGAAATTAGCTTTG 58.018 29.630 23.71 18.64 46.90 2.77
545 563 9.546428 AACAAACAGCTATTTGAAATTAGCTTT 57.454 25.926 23.71 1.67 46.90 3.51
546 564 9.546428 AAACAAACAGCTATTTGAAATTAGCTT 57.454 25.926 23.71 2.38 46.90 3.74
548 566 8.977505 TGAAACAAACAGCTATTTGAAATTAGC 58.022 29.630 23.71 6.42 41.28 3.09
551 569 9.768662 ATCTGAAACAAACAGCTATTTGAAATT 57.231 25.926 23.71 14.35 41.28 1.82
552 570 9.768662 AATCTGAAACAAACAGCTATTTGAAAT 57.231 25.926 23.71 9.00 41.28 2.17
553 571 9.598517 AAATCTGAAACAAACAGCTATTTGAAA 57.401 25.926 23.71 5.43 41.28 2.69
554 572 9.248291 GAAATCTGAAACAAACAGCTATTTGAA 57.752 29.630 23.71 5.75 41.28 2.69
555 573 8.412456 TGAAATCTGAAACAAACAGCTATTTGA 58.588 29.630 23.71 0.49 41.28 2.69
556 574 8.578308 TGAAATCTGAAACAAACAGCTATTTG 57.422 30.769 15.81 15.81 43.81 2.32
557 575 8.632679 TCTGAAATCTGAAACAAACAGCTATTT 58.367 29.630 0.00 0.00 35.61 1.40
558 576 8.169977 TCTGAAATCTGAAACAAACAGCTATT 57.830 30.769 0.00 0.00 35.61 1.73
559 577 7.750229 TCTGAAATCTGAAACAAACAGCTAT 57.250 32.000 0.00 0.00 35.61 2.97
560 578 7.750229 ATCTGAAATCTGAAACAAACAGCTA 57.250 32.000 0.00 0.00 35.61 3.32
561 579 6.645790 ATCTGAAATCTGAAACAAACAGCT 57.354 33.333 0.00 0.00 35.61 4.24
562 580 6.087291 CGAATCTGAAATCTGAAACAAACAGC 59.913 38.462 0.00 0.00 35.61 4.40
563 581 6.580041 CCGAATCTGAAATCTGAAACAAACAG 59.420 38.462 0.00 0.00 36.80 3.16
564 582 6.437928 CCGAATCTGAAATCTGAAACAAACA 58.562 36.000 0.00 0.00 0.00 2.83
565 583 5.343325 GCCGAATCTGAAATCTGAAACAAAC 59.657 40.000 0.00 0.00 0.00 2.93
566 584 5.241506 AGCCGAATCTGAAATCTGAAACAAA 59.758 36.000 0.00 0.00 0.00 2.83
567 585 4.761739 AGCCGAATCTGAAATCTGAAACAA 59.238 37.500 0.00 0.00 0.00 2.83
568 586 4.326826 AGCCGAATCTGAAATCTGAAACA 58.673 39.130 0.00 0.00 0.00 2.83
569 587 4.954092 AGCCGAATCTGAAATCTGAAAC 57.046 40.909 0.00 0.00 0.00 2.78
570 588 5.003160 TGAAGCCGAATCTGAAATCTGAAA 58.997 37.500 0.00 0.00 0.00 2.69
571 589 4.393062 GTGAAGCCGAATCTGAAATCTGAA 59.607 41.667 0.00 0.00 0.00 3.02
572 590 3.935203 GTGAAGCCGAATCTGAAATCTGA 59.065 43.478 0.00 0.00 0.00 3.27
573 591 3.064545 GGTGAAGCCGAATCTGAAATCTG 59.935 47.826 0.00 0.00 0.00 2.90
574 592 3.274288 GGTGAAGCCGAATCTGAAATCT 58.726 45.455 0.00 0.00 0.00 2.40
575 593 3.682372 GGTGAAGCCGAATCTGAAATC 57.318 47.619 0.00 0.00 0.00 2.17
588 606 0.811281 ATTAGCTTTGGCGGTGAAGC 59.189 50.000 0.00 6.61 46.57 3.86
589 607 3.244976 CAAATTAGCTTTGGCGGTGAAG 58.755 45.455 0.00 0.00 44.37 3.02
590 608 3.296322 CAAATTAGCTTTGGCGGTGAA 57.704 42.857 0.00 0.00 44.37 3.18
598 616 5.394553 GGATTCTGGGACCAAATTAGCTTTG 60.395 44.000 0.00 0.00 43.27 2.77
599 617 4.711846 GGATTCTGGGACCAAATTAGCTTT 59.288 41.667 0.00 0.00 0.00 3.51
600 618 4.281657 GGATTCTGGGACCAAATTAGCTT 58.718 43.478 0.00 0.00 0.00 3.74
601 619 3.685550 CGGATTCTGGGACCAAATTAGCT 60.686 47.826 0.00 0.00 0.00 3.32
602 620 2.618709 CGGATTCTGGGACCAAATTAGC 59.381 50.000 0.00 0.00 0.00 3.09
603 621 3.118038 TCCGGATTCTGGGACCAAATTAG 60.118 47.826 11.69 0.00 0.00 1.73
604 622 2.847449 TCCGGATTCTGGGACCAAATTA 59.153 45.455 11.69 0.00 0.00 1.40
605 623 1.638589 TCCGGATTCTGGGACCAAATT 59.361 47.619 11.69 0.00 0.00 1.82
606 624 1.295020 TCCGGATTCTGGGACCAAAT 58.705 50.000 11.69 0.00 0.00 2.32
607 625 1.068948 TTCCGGATTCTGGGACCAAA 58.931 50.000 4.15 0.00 30.46 3.28
608 626 0.326927 GTTCCGGATTCTGGGACCAA 59.673 55.000 11.53 0.00 30.46 3.67
609 627 0.838554 TGTTCCGGATTCTGGGACCA 60.839 55.000 18.69 7.38 33.72 4.02
610 628 0.326927 TTGTTCCGGATTCTGGGACC 59.673 55.000 18.69 5.08 33.72 4.46
611 629 1.810755 GTTTGTTCCGGATTCTGGGAC 59.189 52.381 15.25 15.25 35.38 4.46
612 630 1.422024 TGTTTGTTCCGGATTCTGGGA 59.578 47.619 4.15 0.00 0.00 4.37
613 631 1.812571 CTGTTTGTTCCGGATTCTGGG 59.187 52.381 4.15 0.06 0.00 4.45
614 632 1.812571 CCTGTTTGTTCCGGATTCTGG 59.187 52.381 4.15 5.04 0.00 3.86
615 633 1.812571 CCCTGTTTGTTCCGGATTCTG 59.187 52.381 4.15 0.00 0.00 3.02
616 634 1.886655 GCCCTGTTTGTTCCGGATTCT 60.887 52.381 4.15 0.00 0.00 2.40
617 635 0.526211 GCCCTGTTTGTTCCGGATTC 59.474 55.000 4.15 2.09 0.00 2.52
618 636 0.898326 GGCCCTGTTTGTTCCGGATT 60.898 55.000 4.15 0.00 0.00 3.01
619 637 1.304134 GGCCCTGTTTGTTCCGGAT 60.304 57.895 4.15 0.00 0.00 4.18
620 638 2.114411 GGCCCTGTTTGTTCCGGA 59.886 61.111 0.00 0.00 0.00 5.14
621 639 2.132089 TAGGGCCCTGTTTGTTCCGG 62.132 60.000 35.81 0.00 0.00 5.14
622 640 0.958876 GTAGGGCCCTGTTTGTTCCG 60.959 60.000 35.81 0.00 0.00 4.30
623 641 0.404426 AGTAGGGCCCTGTTTGTTCC 59.596 55.000 35.81 11.03 0.00 3.62
624 642 3.079578 GTTAGTAGGGCCCTGTTTGTTC 58.920 50.000 35.81 14.23 0.00 3.18
625 643 2.444010 TGTTAGTAGGGCCCTGTTTGTT 59.556 45.455 35.81 14.77 0.00 2.83
626 644 2.059490 TGTTAGTAGGGCCCTGTTTGT 58.941 47.619 35.81 15.81 0.00 2.83
627 645 2.871096 TGTTAGTAGGGCCCTGTTTG 57.129 50.000 35.81 0.00 0.00 2.93
628 646 3.190439 AGATGTTAGTAGGGCCCTGTTT 58.810 45.455 35.81 20.94 0.00 2.83
629 647 2.846950 AGATGTTAGTAGGGCCCTGTT 58.153 47.619 35.81 23.56 0.00 3.16
630 648 2.570386 AGATGTTAGTAGGGCCCTGT 57.430 50.000 35.81 23.37 0.00 4.00
631 649 3.845860 TCTAGATGTTAGTAGGGCCCTG 58.154 50.000 35.81 12.99 0.00 4.45
632 650 4.768807 ATCTAGATGTTAGTAGGGCCCT 57.231 45.455 31.35 31.35 0.00 5.19
633 651 5.828871 TCTATCTAGATGTTAGTAGGGCCC 58.171 45.833 16.46 16.46 0.00 5.80
634 652 6.600427 GTCTCTATCTAGATGTTAGTAGGGCC 59.400 46.154 15.79 0.00 0.00 5.80
635 653 6.600427 GGTCTCTATCTAGATGTTAGTAGGGC 59.400 46.154 15.79 0.67 0.00 5.19
636 654 7.924541 AGGTCTCTATCTAGATGTTAGTAGGG 58.075 42.308 15.79 3.54 0.00 3.53
701 720 2.989840 CAGAGCAAAGAGACGTGGTTAG 59.010 50.000 0.00 0.00 0.00 2.34
802 829 8.882736 TGAAGAAACTCGTATTGTCGTAGTATA 58.117 33.333 0.00 0.00 0.00 1.47
803 830 7.755591 TGAAGAAACTCGTATTGTCGTAGTAT 58.244 34.615 0.00 0.00 0.00 2.12
804 831 7.132694 TGAAGAAACTCGTATTGTCGTAGTA 57.867 36.000 0.00 0.00 0.00 1.82
826 871 4.620803 GCTCTTTTACACGAGGATCCTTGA 60.621 45.833 32.26 10.23 0.00 3.02
855 1190 9.998106 AGAGTTCAGACTTAAGTGCTTAATTAA 57.002 29.630 14.14 0.00 35.88 1.40
856 1191 9.424319 CAGAGTTCAGACTTAAGTGCTTAATTA 57.576 33.333 14.14 0.00 35.88 1.40
857 1192 8.150945 TCAGAGTTCAGACTTAAGTGCTTAATT 58.849 33.333 14.14 5.06 35.88 1.40
858 1193 7.600752 GTCAGAGTTCAGACTTAAGTGCTTAAT 59.399 37.037 14.14 0.00 35.88 1.40
902 1237 4.142795 GGTTTTCTTGCCGATCTCTTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
949 1284 2.792599 CGACGGACGGAGGAGAAG 59.207 66.667 0.00 0.00 38.46 2.85
986 1321 3.136123 CCATTGGGCAGTGCGAGG 61.136 66.667 9.45 2.33 0.00 4.63
1183 1518 0.753262 GTGTAGGCACGGATCCTCAT 59.247 55.000 10.75 0.00 35.75 2.90
1277 1612 8.730680 GCAGAATTAGTAAGGATTGTTTCAGAA 58.269 33.333 0.00 0.00 0.00 3.02
1330 1668 7.331791 ACTCTTAGATTAGGCACTCGATTTTT 58.668 34.615 0.00 0.00 41.75 1.94
1355 1693 6.078202 TGCGTTTCAATGGACATTTCTTTA 57.922 33.333 0.00 0.00 0.00 1.85
1367 1705 9.599322 GATTTCTAGGTAATATGCGTTTCAATG 57.401 33.333 0.00 0.00 0.00 2.82
1368 1706 8.784043 GGATTTCTAGGTAATATGCGTTTCAAT 58.216 33.333 0.00 0.00 0.00 2.57
1372 1710 6.002082 GGGGATTTCTAGGTAATATGCGTTT 58.998 40.000 0.00 0.00 0.00 3.60
1376 1714 6.374417 TCTGGGGATTTCTAGGTAATATGC 57.626 41.667 0.00 0.00 0.00 3.14
1412 1752 7.445402 GGGACTTATTCAGAAATAGCAAGCATA 59.555 37.037 0.00 0.00 0.00 3.14
1437 1778 5.055144 CAGAATCAGGTGTCACATATCAGG 58.945 45.833 5.12 0.00 0.00 3.86
1623 1984 4.618227 GCATCCATAAGCAACCGAAAACTT 60.618 41.667 0.00 0.00 0.00 2.66
1639 2052 2.754552 ACAGTTGCGTATTTGCATCCAT 59.245 40.909 0.00 0.00 45.78 3.41
1640 2053 2.158559 ACAGTTGCGTATTTGCATCCA 58.841 42.857 0.00 0.00 45.78 3.41
1641 2054 2.919666 ACAGTTGCGTATTTGCATCC 57.080 45.000 0.00 0.00 45.78 3.51
1642 2055 3.848019 CAGAACAGTTGCGTATTTGCATC 59.152 43.478 0.00 0.00 45.78 3.91
1643 2056 3.366273 CCAGAACAGTTGCGTATTTGCAT 60.366 43.478 0.00 0.00 45.78 3.96
1644 2057 2.031245 CCAGAACAGTTGCGTATTTGCA 60.031 45.455 0.00 0.00 44.61 4.08
1645 2058 2.225491 TCCAGAACAGTTGCGTATTTGC 59.775 45.455 0.00 0.00 0.00 3.68
1646 2059 4.213270 TCTTCCAGAACAGTTGCGTATTTG 59.787 41.667 0.00 0.00 0.00 2.32
1647 2060 4.385825 TCTTCCAGAACAGTTGCGTATTT 58.614 39.130 0.00 0.00 0.00 1.40
1648 2061 4.002906 TCTTCCAGAACAGTTGCGTATT 57.997 40.909 0.00 0.00 0.00 1.89
1649 2062 3.678056 TCTTCCAGAACAGTTGCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
1650 2063 3.325870 CATCTTCCAGAACAGTTGCGTA 58.674 45.455 0.00 0.00 0.00 4.42
1651 2064 2.146342 CATCTTCCAGAACAGTTGCGT 58.854 47.619 0.00 0.00 0.00 5.24
1652 2065 1.135859 GCATCTTCCAGAACAGTTGCG 60.136 52.381 0.00 0.00 0.00 4.85
1653 2066 2.157738 AGCATCTTCCAGAACAGTTGC 58.842 47.619 0.00 0.00 36.41 4.17
1654 2067 3.817084 TCAAGCATCTTCCAGAACAGTTG 59.183 43.478 0.00 0.00 0.00 3.16
1655 2068 4.090761 TCAAGCATCTTCCAGAACAGTT 57.909 40.909 0.00 0.00 0.00 3.16
1656 2069 3.777106 TCAAGCATCTTCCAGAACAGT 57.223 42.857 0.00 0.00 0.00 3.55
1657 2070 5.640189 AAATCAAGCATCTTCCAGAACAG 57.360 39.130 0.00 0.00 0.00 3.16
1658 2071 5.047802 GGAAAATCAAGCATCTTCCAGAACA 60.048 40.000 0.00 0.00 36.39 3.18
1659 2072 5.047802 TGGAAAATCAAGCATCTTCCAGAAC 60.048 40.000 0.00 0.00 40.41 3.01
1660 2073 5.047802 GTGGAAAATCAAGCATCTTCCAGAA 60.048 40.000 2.16 0.00 44.65 3.02
1661 2074 4.460382 GTGGAAAATCAAGCATCTTCCAGA 59.540 41.667 2.16 0.00 44.65 3.86
1662 2075 4.461781 AGTGGAAAATCAAGCATCTTCCAG 59.538 41.667 2.16 0.00 44.65 3.86
1663 2076 4.219070 CAGTGGAAAATCAAGCATCTTCCA 59.781 41.667 0.00 0.00 42.47 3.53
1664 2077 4.460382 TCAGTGGAAAATCAAGCATCTTCC 59.540 41.667 0.00 0.00 36.81 3.46
1665 2078 5.633830 TCAGTGGAAAATCAAGCATCTTC 57.366 39.130 0.00 0.00 0.00 2.87
1666 2079 6.409524 TTTCAGTGGAAAATCAAGCATCTT 57.590 33.333 0.00 0.00 39.96 2.40
1667 2080 6.600882 ATTTCAGTGGAAAATCAAGCATCT 57.399 33.333 0.00 0.00 45.52 2.90
1668 2081 6.647895 ACAATTTCAGTGGAAAATCAAGCATC 59.352 34.615 0.00 0.00 45.52 3.91
1669 2082 6.527423 ACAATTTCAGTGGAAAATCAAGCAT 58.473 32.000 0.00 0.00 45.52 3.79
1670 2083 5.916318 ACAATTTCAGTGGAAAATCAAGCA 58.084 33.333 0.00 0.00 45.52 3.91
1671 2084 6.218746 AGACAATTTCAGTGGAAAATCAAGC 58.781 36.000 0.00 0.00 45.52 4.01
1672 2085 8.545420 CAAAGACAATTTCAGTGGAAAATCAAG 58.455 33.333 0.00 0.00 45.52 3.02
1673 2086 7.011295 GCAAAGACAATTTCAGTGGAAAATCAA 59.989 33.333 0.00 0.00 45.52 2.57
1674 2087 6.479660 GCAAAGACAATTTCAGTGGAAAATCA 59.520 34.615 0.00 0.00 45.52 2.57
1675 2088 6.703165 AGCAAAGACAATTTCAGTGGAAAATC 59.297 34.615 0.00 0.00 45.52 2.17
1676 2089 6.585416 AGCAAAGACAATTTCAGTGGAAAAT 58.415 32.000 0.00 0.00 45.52 1.82
1677 2090 5.976458 AGCAAAGACAATTTCAGTGGAAAA 58.024 33.333 0.00 0.00 45.52 2.29
1678 2091 5.126869 TGAGCAAAGACAATTTCAGTGGAAA 59.873 36.000 0.00 0.00 46.36 3.13
1679 2092 4.644234 TGAGCAAAGACAATTTCAGTGGAA 59.356 37.500 0.00 0.00 0.00 3.53
1680 2093 4.036734 GTGAGCAAAGACAATTTCAGTGGA 59.963 41.667 0.00 0.00 0.00 4.02
1681 2094 4.202040 TGTGAGCAAAGACAATTTCAGTGG 60.202 41.667 0.00 0.00 0.00 4.00
1696 2109 5.449041 CAACTCTTGTTAGCTTTGTGAGCAA 60.449 40.000 0.00 0.00 43.46 3.91
1699 2112 5.504665 CCACAACTCTTGTTAGCTTTGTGAG 60.505 44.000 20.02 11.67 43.23 3.51
1718 2131 1.339055 CCTGCTCTTCGAATCCCACAA 60.339 52.381 0.00 0.00 0.00 3.33
1813 2226 2.880268 CCTTGACTGCACTGTCATCAAA 59.120 45.455 9.37 0.00 45.03 2.69
1838 2251 0.782384 AAACTCATCGACGAACACGC 59.218 50.000 0.00 0.00 0.00 5.34
1839 2252 2.340577 GGTAAACTCATCGACGAACACG 59.659 50.000 0.00 0.00 0.00 4.49
1914 2328 5.240844 ACTCCCTTACGAAGAACCAAATTTG 59.759 40.000 11.40 11.40 0.00 2.32
1917 2331 4.041198 TGACTCCCTTACGAAGAACCAAAT 59.959 41.667 0.00 0.00 0.00 2.32
2135 2558 2.142756 TGATGGGGATAATTGGCAGGA 58.857 47.619 0.00 0.00 0.00 3.86
2422 2867 5.662674 AGTGAACTACAAGGTCCTCATAC 57.337 43.478 0.00 0.00 28.56 2.39
2622 3067 5.518847 TGAAGCGACTATTACCATTCGAAAG 59.481 40.000 0.00 0.00 33.20 2.62
2688 3133 8.470002 AGAAGAAATACATAATTTTGGGAGCAC 58.530 33.333 0.89 0.00 37.93 4.40
2750 3195 4.355543 TTTGAACAGAACTGAACTGCAC 57.644 40.909 8.87 0.00 38.74 4.57
2773 3218 1.070134 GCAATATCTACAGGCCCGTGA 59.930 52.381 0.49 0.00 0.00 4.35
2780 3225 2.149578 GCAGCAGGCAATATCTACAGG 58.850 52.381 0.00 0.00 43.97 4.00
2872 3317 7.201741 GGAAGGATTATACCAAGACTTTTGCTC 60.202 40.741 0.00 0.00 0.00 4.26
2973 3451 8.940952 GCTAACCAATGATATATCTTCAGTTCC 58.059 37.037 13.79 6.47 0.00 3.62
2987 3465 7.775053 TTTAGTTCCTTTGCTAACCAATGAT 57.225 32.000 0.00 0.00 32.49 2.45
3113 3592 2.459060 TTTGGTATCGCGTTGGAGAA 57.541 45.000 5.77 0.00 0.00 2.87
3253 3732 6.216569 TGAGTCAATATTGTTCTATCGGCTC 58.783 40.000 14.97 4.37 0.00 4.70
3312 3791 4.929808 CAGATTCCGTAATACAGCCATACC 59.070 45.833 0.00 0.00 0.00 2.73
3313 3792 5.779922 TCAGATTCCGTAATACAGCCATAC 58.220 41.667 0.00 0.00 0.00 2.39
3446 3925 5.564550 ACTGCATCTGGAAGTTTGTATCTT 58.435 37.500 0.00 0.00 33.76 2.40
3476 3955 4.688413 CCTCTGTTCTGTTGCTACTCTTTC 59.312 45.833 0.00 0.00 0.00 2.62
3501 3980 6.690194 ATCAGCAGGAATCAAGATGTAAAC 57.310 37.500 0.00 0.00 0.00 2.01
3601 4094 3.157087 TGGGAATCTTGGCAGAAGAAAC 58.843 45.455 1.86 0.52 30.76 2.78
3728 4224 4.269523 TCAGGTTGCCAAGGCGCT 62.270 61.111 7.64 0.00 45.51 5.92
3858 8690 0.394899 GGGTCTCCTTTGGCAGATGG 60.395 60.000 0.00 0.00 0.00 3.51
3918 8765 2.158755 AGAGTTTCCTGTGAACCTGTGG 60.159 50.000 0.00 0.00 0.00 4.17
3931 8778 0.035915 GGGGAGCAGTGAGAGTTTCC 60.036 60.000 0.00 0.00 0.00 3.13
3932 8779 0.035915 GGGGGAGCAGTGAGAGTTTC 60.036 60.000 0.00 0.00 0.00 2.78
4099 13293 0.184451 AGGCCTGGCATTGTCCTATG 59.816 55.000 22.05 0.00 0.00 2.23
4176 13371 2.222213 TGGTAAAATGTGCTTGACGACG 59.778 45.455 0.00 0.00 0.00 5.12
4177 13372 3.250040 ACTGGTAAAATGTGCTTGACGAC 59.750 43.478 0.00 0.00 0.00 4.34
4178 13373 3.472652 ACTGGTAAAATGTGCTTGACGA 58.527 40.909 0.00 0.00 0.00 4.20
4179 13374 3.896648 ACTGGTAAAATGTGCTTGACG 57.103 42.857 0.00 0.00 0.00 4.35
4187 13382 4.131596 AGCACGTGTAACTGGTAAAATGT 58.868 39.130 18.38 0.00 31.75 2.71
4194 13389 3.738830 TTCTTAGCACGTGTAACTGGT 57.261 42.857 18.38 0.00 32.26 4.00
4195 13390 4.688879 TGATTTCTTAGCACGTGTAACTGG 59.311 41.667 18.38 3.47 31.75 4.00
4196 13391 5.839262 TGATTTCTTAGCACGTGTAACTG 57.161 39.130 18.38 4.52 31.75 3.16
4199 13394 5.929415 TCACATGATTTCTTAGCACGTGTAA 59.071 36.000 18.38 12.85 0.00 2.41
4205 13410 4.154737 TGCTGTCACATGATTTCTTAGCAC 59.845 41.667 0.00 0.00 34.14 4.40
4251 13457 8.827832 TTAGAGGCTAGTATGGTTGTACTAAA 57.172 34.615 0.00 0.00 36.88 1.85
4253 13459 9.075678 GAATTAGAGGCTAGTATGGTTGTACTA 57.924 37.037 0.00 0.00 36.39 1.82
4312 13522 3.686726 GCAATTCTGTCTACCCTGAGTTG 59.313 47.826 0.00 0.00 34.97 3.16
4313 13523 3.617531 CGCAATTCTGTCTACCCTGAGTT 60.618 47.826 0.00 0.00 0.00 3.01
4314 13524 2.093973 CGCAATTCTGTCTACCCTGAGT 60.094 50.000 0.00 0.00 0.00 3.41
4331 13541 9.594478 TTCTAGAATCATACAGTAAAATCGCAA 57.406 29.630 0.00 0.00 0.00 4.85
4347 13557 8.146053 TGGATCTTAAAGTGGTTCTAGAATCA 57.854 34.615 14.58 14.58 0.00 2.57
4355 13565 9.841880 GAGTTAATTTGGATCTTAAAGTGGTTC 57.158 33.333 0.00 0.00 0.00 3.62
4447 15700 2.175715 ACCCCTGCCAGGATCTTAAATC 59.824 50.000 13.74 0.00 37.67 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.