Multiple sequence alignment - TraesCS1A01G349000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G349000 chr1A 100.000 4602 0 0 1 4602 534262968 534258367 0.000000e+00 8499.0
1 TraesCS1A01G349000 chr1A 94.180 189 11 0 4021 4209 426525852 426525664 5.830000e-74 289.0
2 TraesCS1A01G349000 chr1B 92.993 999 47 13 2036 3023 592651207 592652193 0.000000e+00 1435.0
3 TraesCS1A01G349000 chr1B 88.900 991 39 24 1 957 592647540 592648493 0.000000e+00 1155.0
4 TraesCS1A01G349000 chr1B 94.712 416 17 5 3227 3638 592652501 592652915 3.880000e-180 641.0
5 TraesCS1A01G349000 chr1B 87.047 386 33 13 4226 4602 592655153 592655530 1.980000e-113 420.0
6 TraesCS1A01G349000 chr1B 85.946 370 28 3 1607 1955 592649085 592649451 1.560000e-99 374.0
7 TraesCS1A01G349000 chr1B 88.462 286 16 8 3634 3914 592652940 592653213 3.430000e-86 329.0
8 TraesCS1A01G349000 chr1B 89.062 256 27 1 2966 3220 592652194 592652449 2.670000e-82 316.0
9 TraesCS1A01G349000 chr1B 81.250 416 54 16 1166 1575 592648696 592649093 9.610000e-82 315.0
10 TraesCS1A01G349000 chr1B 97.727 44 1 0 1998 2041 592649446 592649489 4.940000e-10 76.8
11 TraesCS1A01G349000 chr1D 91.373 823 49 10 2837 3637 437424358 437425180 0.000000e+00 1107.0
12 TraesCS1A01G349000 chr1D 81.340 1254 120 56 780 1988 437422037 437423221 0.000000e+00 915.0
13 TraesCS1A01G349000 chr1D 90.549 656 37 15 2021 2663 437423219 437423862 0.000000e+00 845.0
14 TraesCS1A01G349000 chr1D 97.368 304 8 0 1 304 437421377 437421680 6.830000e-143 518.0
15 TraesCS1A01G349000 chr1D 86.923 390 27 9 3634 4017 437425207 437425578 2.560000e-112 416.0
16 TraesCS1A01G349000 chr1D 94.000 150 7 1 2655 2804 437424213 437424360 4.630000e-55 226.0
17 TraesCS1A01G349000 chr1D 89.011 182 16 4 4423 4602 437425693 437425872 5.990000e-54 222.0
18 TraesCS1A01G349000 chr1D 86.364 176 15 4 4436 4602 437432362 437432537 2.830000e-42 183.0
19 TraesCS1A01G349000 chr3D 93.514 185 12 0 4025 4209 473448713 473448897 4.540000e-70 276.0
20 TraesCS1A01G349000 chr7A 93.085 188 12 1 4023 4209 254623 254436 1.630000e-69 274.0
21 TraesCS1A01G349000 chr6B 93.011 186 13 0 4024 4209 694111267 694111082 5.870000e-69 272.0
22 TraesCS1A01G349000 chr6D 92.188 192 14 1 4018 4209 149308998 149308808 2.110000e-68 270.0
23 TraesCS1A01G349000 chr7D 91.979 187 15 0 4023 4209 66505393 66505579 3.530000e-66 263.0
24 TraesCS1A01G349000 chr2D 92.063 189 12 2 4023 4209 20613612 20613425 3.530000e-66 263.0
25 TraesCS1A01G349000 chr2D 90.957 188 16 1 4023 4209 427936788 427936601 7.640000e-63 252.0
26 TraesCS1A01G349000 chr5D 91.099 191 12 2 4024 4209 524914805 524914615 2.130000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G349000 chr1A 534258367 534262968 4601 True 8499.000000 8499 100.000000 1 4602 1 chr1A.!!$R2 4601
1 TraesCS1A01G349000 chr1B 592647540 592655530 7990 False 562.422222 1435 89.566556 1 4602 9 chr1B.!!$F1 4601
2 TraesCS1A01G349000 chr1D 437421377 437425872 4495 False 607.000000 1107 90.080571 1 4602 7 chr1D.!!$F2 4601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 958 0.108186 CTGCAATCCACCGTGCTCTA 60.108 55.000 0.00 0.0 41.48 2.43 F
1505 1595 0.107263 TTTGCCAGTGTGTGCTGAGA 60.107 50.000 0.00 0.0 38.70 3.27 F
1572 1663 0.673985 ACAGCGAAGTCAGTAGTGCA 59.326 50.000 0.00 0.0 0.00 4.57 F
1970 2082 1.002659 TGCGCCCTTCTACTTTTAGCA 59.997 47.619 4.18 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 4338 0.613777 GTGTCCCAGAATTCGTCCCT 59.386 55.000 0.0 0.0 0.00 4.20 R
2779 4998 1.248486 GTCCTGAACTTTTCTGCCCC 58.752 55.000 0.0 0.0 0.00 5.80 R
3196 5481 1.611977 CCCGTACTATCATCGGCTCAA 59.388 52.381 0.0 0.0 42.48 3.02 R
3702 6066 0.476771 ACCCCGAACCAGTGACAAAT 59.523 50.000 0.0 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
323 324 4.044721 CGCAGCCAGATCCATGAG 57.955 61.111 0.00 0.00 0.00 2.90
350 351 3.712907 CGGGCGAGGGGGAGAAAA 61.713 66.667 0.00 0.00 0.00 2.29
352 353 2.272471 GGCGAGGGGGAGAAAAGG 59.728 66.667 0.00 0.00 0.00 3.11
355 356 2.680370 CGAGGGGGAGAAAAGGGGG 61.680 68.421 0.00 0.00 0.00 5.40
380 381 3.537874 CGGCCGGAACCCTAGAGG 61.538 72.222 20.10 0.00 43.78 3.69
390 391 2.203509 CCTAGAGGGCGACGGGAT 60.204 66.667 0.00 0.00 0.00 3.85
391 392 1.074423 CCTAGAGGGCGACGGGATA 59.926 63.158 0.00 0.00 0.00 2.59
392 393 0.323542 CCTAGAGGGCGACGGGATAT 60.324 60.000 0.00 0.00 0.00 1.63
393 394 1.546961 CTAGAGGGCGACGGGATATT 58.453 55.000 0.00 0.00 0.00 1.28
394 395 1.893801 CTAGAGGGCGACGGGATATTT 59.106 52.381 0.00 0.00 0.00 1.40
395 396 0.393077 AGAGGGCGACGGGATATTTG 59.607 55.000 0.00 0.00 0.00 2.32
396 397 0.602905 GAGGGCGACGGGATATTTGG 60.603 60.000 0.00 0.00 0.00 3.28
470 471 3.009115 AGGTGGGTCATGTCCCCG 61.009 66.667 23.23 0.00 45.86 5.73
478 479 1.080354 TCATGTCCCCGAGGAACCT 59.920 57.895 0.00 0.00 46.38 3.50
497 498 2.034687 AAGGCGTTCATGGCTGCT 59.965 55.556 0.00 0.00 45.07 4.24
503 504 4.728110 TTCATGGCTGCTGCGGCT 62.728 61.111 30.31 11.38 40.82 5.52
592 603 3.827898 GGAGTGGCGGAGAGGACG 61.828 72.222 0.00 0.00 0.00 4.79
649 664 3.108289 CGGCGTGCTCTGTGTCTG 61.108 66.667 0.00 0.00 0.00 3.51
650 665 3.418068 GGCGTGCTCTGTGTCTGC 61.418 66.667 0.00 0.00 0.00 4.26
686 701 3.936203 GGGTGGCAGTGTCCGTCA 61.936 66.667 0.00 0.00 0.00 4.35
688 703 2.421739 GTGGCAGTGTCCGTCAGT 59.578 61.111 0.00 0.00 0.00 3.41
699 715 4.293648 CGTCAGTGCGGTGGGTCA 62.294 66.667 0.00 0.00 0.00 4.02
849 883 0.832135 TCTCCCTGACTTGTCGCCTT 60.832 55.000 0.00 0.00 0.00 4.35
912 958 0.108186 CTGCAATCCACCGTGCTCTA 60.108 55.000 0.00 0.00 41.48 2.43
913 959 0.541392 TGCAATCCACCGTGCTCTAT 59.459 50.000 0.00 0.00 41.48 1.98
914 960 1.221414 GCAATCCACCGTGCTCTATC 58.779 55.000 0.00 0.00 37.78 2.08
915 961 1.202580 GCAATCCACCGTGCTCTATCT 60.203 52.381 0.00 0.00 37.78 1.98
924 970 1.269309 CGTGCTCTATCTCCTTTCCCG 60.269 57.143 0.00 0.00 0.00 5.14
962 1026 2.672996 GCTTGCTCCCGCCTTGAA 60.673 61.111 0.00 0.00 34.43 2.69
969 1033 0.175760 CTCCCGCCTTGAAGATTCGA 59.824 55.000 0.00 0.00 0.00 3.71
973 1037 1.560923 CGCCTTGAAGATTCGATCGT 58.439 50.000 15.94 0.00 0.00 3.73
974 1038 1.518929 CGCCTTGAAGATTCGATCGTC 59.481 52.381 15.94 6.30 38.12 4.20
975 1039 1.518929 GCCTTGAAGATTCGATCGTCG 59.481 52.381 15.94 0.00 40.08 5.12
976 1040 1.518929 CCTTGAAGATTCGATCGTCGC 59.481 52.381 15.94 5.42 40.08 5.19
977 1041 1.518929 CTTGAAGATTCGATCGTCGCC 59.481 52.381 15.94 4.53 40.08 5.54
978 1042 0.738975 TGAAGATTCGATCGTCGCCT 59.261 50.000 15.94 5.70 40.08 5.52
979 1043 1.124462 GAAGATTCGATCGTCGCCTG 58.876 55.000 15.94 0.00 40.21 4.85
980 1044 0.738975 AAGATTCGATCGTCGCCTGA 59.261 50.000 15.94 0.00 40.21 3.86
1022 1091 2.267006 CTGCGCTGGATCCACACT 59.733 61.111 11.44 0.00 0.00 3.55
1052 1121 5.208463 GATGGTACCATCTTCTCTTCCTC 57.792 47.826 37.29 16.02 46.67 3.71
1055 1124 1.859302 ACCATCTTCTCTTCCTCGCT 58.141 50.000 0.00 0.00 0.00 4.93
1056 1125 1.754226 ACCATCTTCTCTTCCTCGCTC 59.246 52.381 0.00 0.00 0.00 5.03
1084 1153 3.320733 TCTTATCTCGCTTCGTCTTCG 57.679 47.619 0.00 0.00 38.55 3.79
1104 1173 2.062519 GGTCGTGCTTCTCTTCTTGTC 58.937 52.381 0.00 0.00 0.00 3.18
1120 1192 2.046314 TCGCCTTGCCTGGTTAGC 60.046 61.111 0.00 0.00 0.00 3.09
1123 1195 1.090052 CGCCTTGCCTGGTTAGCTAC 61.090 60.000 0.00 0.00 0.00 3.58
1126 1205 1.003118 CCTTGCCTGGTTAGCTACACA 59.997 52.381 0.00 0.00 0.00 3.72
1128 1207 3.347216 CTTGCCTGGTTAGCTACACATT 58.653 45.455 0.00 0.00 0.00 2.71
1129 1208 2.710377 TGCCTGGTTAGCTACACATTG 58.290 47.619 0.00 0.00 0.00 2.82
1134 1213 5.185454 CCTGGTTAGCTACACATTGATCAA 58.815 41.667 11.26 11.26 0.00 2.57
1135 1214 5.295292 CCTGGTTAGCTACACATTGATCAAG 59.705 44.000 14.54 8.57 0.00 3.02
1146 1225 4.862574 CACATTGATCAAGGCTGAATTGTG 59.137 41.667 19.47 17.47 34.49 3.33
1148 1227 2.799017 TGATCAAGGCTGAATTGTGCT 58.201 42.857 0.00 0.00 34.49 4.40
1149 1228 3.954200 TGATCAAGGCTGAATTGTGCTA 58.046 40.909 0.00 0.00 34.49 3.49
1150 1229 3.691118 TGATCAAGGCTGAATTGTGCTAC 59.309 43.478 0.00 0.00 34.49 3.58
1151 1230 2.076100 TCAAGGCTGAATTGTGCTACG 58.924 47.619 0.00 0.00 0.00 3.51
1152 1231 2.076100 CAAGGCTGAATTGTGCTACGA 58.924 47.619 0.00 0.00 0.00 3.43
1154 1233 2.555199 AGGCTGAATTGTGCTACGATC 58.445 47.619 0.00 0.00 0.00 3.69
1155 1234 1.258982 GGCTGAATTGTGCTACGATCG 59.741 52.381 14.88 14.88 0.00 3.69
1156 1235 1.927174 GCTGAATTGTGCTACGATCGT 59.073 47.619 25.94 25.94 0.00 3.73
1157 1236 3.113322 GCTGAATTGTGCTACGATCGTA 58.887 45.455 25.37 25.37 0.00 3.43
1158 1237 3.061139 GCTGAATTGTGCTACGATCGTAC 60.061 47.826 23.54 17.24 0.00 3.67
1159 1238 3.441163 TGAATTGTGCTACGATCGTACC 58.559 45.455 23.54 17.74 0.00 3.34
1160 1239 3.119424 TGAATTGTGCTACGATCGTACCA 60.119 43.478 23.54 20.14 0.00 3.25
1161 1240 3.728076 ATTGTGCTACGATCGTACCAT 57.272 42.857 23.54 11.55 0.00 3.55
1162 1241 4.841443 ATTGTGCTACGATCGTACCATA 57.159 40.909 23.54 18.19 0.00 2.74
1163 1242 4.841443 TTGTGCTACGATCGTACCATAT 57.159 40.909 23.54 0.23 0.00 1.78
1164 1243 4.414999 TGTGCTACGATCGTACCATATC 57.585 45.455 23.54 12.16 0.00 1.63
1183 1262 0.605860 CATGGGGCTGCATCTAGAGC 60.606 60.000 0.50 2.97 34.23 4.09
1185 1264 1.227793 GGGGCTGCATCTAGAGCAC 60.228 63.158 11.38 4.40 37.94 4.40
1187 1266 0.532417 GGGCTGCATCTAGAGCACTG 60.532 60.000 11.38 0.45 35.60 3.66
1195 1274 4.222810 TGCATCTAGAGCACTGAGGTTAAA 59.777 41.667 11.38 0.00 37.02 1.52
1198 1277 5.599999 TCTAGAGCACTGAGGTTAAATCC 57.400 43.478 0.00 0.00 0.00 3.01
1204 1283 4.042187 AGCACTGAGGTTAAATCCTTCTGT 59.958 41.667 0.00 0.00 38.02 3.41
1213 1292 6.151817 AGGTTAAATCCTTCTGTTTGATCTGC 59.848 38.462 0.00 0.00 33.52 4.26
1244 1323 6.907212 CGGCTTTTACTTACTTGCATAATGAG 59.093 38.462 0.00 0.00 0.00 2.90
1245 1324 7.201609 CGGCTTTTACTTACTTGCATAATGAGA 60.202 37.037 0.00 0.00 0.00 3.27
1248 1330 7.553881 TTTACTTACTTGCATAATGAGAGCC 57.446 36.000 0.00 0.00 0.00 4.70
1257 1339 4.337274 TGCATAATGAGAGCCTCAATTGTG 59.663 41.667 5.13 2.61 44.04 3.33
1266 1348 1.470098 GCCTCAATTGTGGTACTGCTG 59.530 52.381 23.73 1.11 0.00 4.41
1270 1352 0.112218 AATTGTGGTACTGCTGCCCA 59.888 50.000 0.00 0.00 0.00 5.36
1271 1353 0.112218 ATTGTGGTACTGCTGCCCAA 59.888 50.000 0.00 0.75 0.00 4.12
1279 1361 5.126384 GTGGTACTGCTGCCCAATTAAATTA 59.874 40.000 0.00 0.00 0.00 1.40
1291 1380 9.066892 TGCCCAATTAAATTAGCTAGTTGATAG 57.933 33.333 1.81 0.00 34.31 2.08
1292 1381 9.284968 GCCCAATTAAATTAGCTAGTTGATAGA 57.715 33.333 1.81 0.00 32.76 1.98
1303 1392 6.660722 AGCTAGTTGATAGAGTATTCGAACG 58.339 40.000 0.00 0.00 32.76 3.95
1304 1393 6.482641 AGCTAGTTGATAGAGTATTCGAACGA 59.517 38.462 0.00 0.00 32.76 3.85
1315 1404 6.090898 AGAGTATTCGAACGAAAAATGGACAG 59.909 38.462 13.34 0.00 37.69 3.51
1316 1405 5.699458 AGTATTCGAACGAAAAATGGACAGT 59.301 36.000 13.34 0.00 37.69 3.55
1318 1407 4.886247 TCGAACGAAAAATGGACAGTTT 57.114 36.364 0.00 0.00 0.00 2.66
1354 1443 2.125106 GCCGACCAAGAAGCCGAT 60.125 61.111 0.00 0.00 0.00 4.18
1360 1450 3.194861 CGACCAAGAAGCCGATAATTCA 58.805 45.455 0.00 0.00 0.00 2.57
1381 1471 3.951775 TTGCCGGAATTTTGTTAGCAT 57.048 38.095 5.05 0.00 0.00 3.79
1404 1494 3.756933 ATTTTTGCACAAGAGTGGCAT 57.243 38.095 0.00 0.00 45.98 4.40
1405 1495 2.798976 TTTTGCACAAGAGTGGCATC 57.201 45.000 0.00 0.00 45.98 3.91
1453 1543 5.308014 TCAGTGTTACCTGACGACTACTAA 58.692 41.667 0.00 0.00 36.57 2.24
1460 1550 3.626670 ACCTGACGACTACTAAGAATCGG 59.373 47.826 0.00 0.00 38.88 4.18
1461 1551 3.003482 CCTGACGACTACTAAGAATCGGG 59.997 52.174 0.00 0.00 38.88 5.14
1463 1553 4.769688 TGACGACTACTAAGAATCGGGTA 58.230 43.478 0.00 0.00 38.88 3.69
1471 1561 8.393671 ACTACTAAGAATCGGGTAGTCATTAG 57.606 38.462 9.01 0.00 40.17 1.73
1472 1562 8.216423 ACTACTAAGAATCGGGTAGTCATTAGA 58.784 37.037 9.01 0.00 40.17 2.10
1473 1563 7.513371 ACTAAGAATCGGGTAGTCATTAGAG 57.487 40.000 0.00 0.00 0.00 2.43
1474 1564 5.793030 AAGAATCGGGTAGTCATTAGAGG 57.207 43.478 0.00 0.00 0.00 3.69
1475 1565 3.574826 AGAATCGGGTAGTCATTAGAGGC 59.425 47.826 0.00 0.00 0.00 4.70
1476 1566 2.447408 TCGGGTAGTCATTAGAGGCA 57.553 50.000 0.00 0.00 0.00 4.75
1477 1567 2.307768 TCGGGTAGTCATTAGAGGCAG 58.692 52.381 0.00 0.00 0.00 4.85
1478 1568 2.032620 CGGGTAGTCATTAGAGGCAGT 58.967 52.381 0.00 0.00 0.00 4.40
1479 1569 2.034812 CGGGTAGTCATTAGAGGCAGTC 59.965 54.545 0.00 0.00 0.00 3.51
1480 1570 3.031736 GGGTAGTCATTAGAGGCAGTCA 58.968 50.000 0.00 0.00 0.00 3.41
1481 1571 3.451178 GGGTAGTCATTAGAGGCAGTCAA 59.549 47.826 0.00 0.00 0.00 3.18
1482 1572 4.081087 GGGTAGTCATTAGAGGCAGTCAAA 60.081 45.833 0.00 0.00 0.00 2.69
1505 1595 0.107263 TTTGCCAGTGTGTGCTGAGA 60.107 50.000 0.00 0.00 38.70 3.27
1526 1617 7.566569 TGAGAAATTTTGGTCCGTGGTATATA 58.433 34.615 0.00 0.00 0.00 0.86
1529 1620 9.416284 AGAAATTTTGGTCCGTGGTATATATTT 57.584 29.630 0.00 0.00 0.00 1.40
1557 1648 2.079925 CTTTGAGGTCAGGCTTACAGC 58.920 52.381 0.68 0.00 41.46 4.40
1572 1663 0.673985 ACAGCGAAGTCAGTAGTGCA 59.326 50.000 0.00 0.00 0.00 4.57
1603 1694 4.517075 GGAGGTAGCTAGCATTTGGATTTC 59.483 45.833 24.01 9.62 0.00 2.17
1621 1712 7.595604 TGGATTTCGTTAGTGGGAAAATAAAC 58.404 34.615 0.00 0.00 35.93 2.01
1622 1713 7.031372 GGATTTCGTTAGTGGGAAAATAAACC 58.969 38.462 0.00 0.00 35.93 3.27
1638 1729 8.893563 AAAATAAACCTATCATTGGTCTGGAA 57.106 30.769 0.00 0.00 36.69 3.53
1692 1783 4.449743 CCACAGAAAAATGGTGCTGATTTG 59.550 41.667 0.00 0.00 32.86 2.32
1693 1784 4.449743 CACAGAAAAATGGTGCTGATTTGG 59.550 41.667 0.00 0.00 32.86 3.28
1813 1925 8.510505 CCGTATCTAGTTCCTGGTACTTTATAC 58.489 40.741 11.39 15.76 0.00 1.47
1818 1930 6.728089 AGTTCCTGGTACTTTATACCTAGC 57.272 41.667 0.00 0.00 38.39 3.42
1938 2050 9.612620 CCTTTAAATATTTGTCTGTTCAGTGAC 57.387 33.333 11.05 0.00 0.00 3.67
1954 2066 3.448686 AGTGACAACTGATATAGTGCGC 58.551 45.455 0.00 0.00 40.26 6.09
1955 2067 2.540101 GTGACAACTGATATAGTGCGCC 59.460 50.000 4.18 0.00 40.26 6.53
1956 2068 2.135933 GACAACTGATATAGTGCGCCC 58.864 52.381 4.18 0.00 40.26 6.13
1957 2069 1.762957 ACAACTGATATAGTGCGCCCT 59.237 47.619 4.18 0.00 40.26 5.19
1958 2070 2.170607 ACAACTGATATAGTGCGCCCTT 59.829 45.455 4.18 0.00 40.26 3.95
1959 2071 2.802816 CAACTGATATAGTGCGCCCTTC 59.197 50.000 4.18 0.00 40.26 3.46
1960 2072 2.320781 ACTGATATAGTGCGCCCTTCT 58.679 47.619 4.18 0.46 38.49 2.85
1961 2073 3.497332 ACTGATATAGTGCGCCCTTCTA 58.503 45.455 4.18 2.98 38.49 2.10
1962 2074 3.256136 ACTGATATAGTGCGCCCTTCTAC 59.744 47.826 4.18 0.00 38.49 2.59
1963 2075 3.497332 TGATATAGTGCGCCCTTCTACT 58.503 45.455 4.18 2.43 0.00 2.57
1964 2076 3.895656 TGATATAGTGCGCCCTTCTACTT 59.104 43.478 4.18 0.00 0.00 2.24
1965 2077 4.344102 TGATATAGTGCGCCCTTCTACTTT 59.656 41.667 4.18 0.00 0.00 2.66
1966 2078 3.629142 ATAGTGCGCCCTTCTACTTTT 57.371 42.857 4.18 0.00 0.00 2.27
1967 2079 4.748277 ATAGTGCGCCCTTCTACTTTTA 57.252 40.909 4.18 0.00 0.00 1.52
1968 2080 2.973945 AGTGCGCCCTTCTACTTTTAG 58.026 47.619 4.18 0.00 0.00 1.85
1969 2081 1.397343 GTGCGCCCTTCTACTTTTAGC 59.603 52.381 4.18 0.00 0.00 3.09
1970 2082 1.002659 TGCGCCCTTCTACTTTTAGCA 59.997 47.619 4.18 0.00 0.00 3.49
1971 2083 1.397343 GCGCCCTTCTACTTTTAGCAC 59.603 52.381 0.00 0.00 0.00 4.40
1972 2084 2.935676 GCGCCCTTCTACTTTTAGCACT 60.936 50.000 0.00 0.00 0.00 4.40
1973 2085 2.673368 CGCCCTTCTACTTTTAGCACTG 59.327 50.000 0.00 0.00 0.00 3.66
1974 2086 3.616560 CGCCCTTCTACTTTTAGCACTGA 60.617 47.826 0.00 0.00 0.00 3.41
1975 2087 4.518249 GCCCTTCTACTTTTAGCACTGAT 58.482 43.478 0.00 0.00 0.00 2.90
1976 2088 4.944317 GCCCTTCTACTTTTAGCACTGATT 59.056 41.667 0.00 0.00 0.00 2.57
1977 2089 5.065346 GCCCTTCTACTTTTAGCACTGATTC 59.935 44.000 0.00 0.00 0.00 2.52
1978 2090 5.586643 CCCTTCTACTTTTAGCACTGATTCC 59.413 44.000 0.00 0.00 0.00 3.01
1979 2091 6.173339 CCTTCTACTTTTAGCACTGATTCCA 58.827 40.000 0.00 0.00 0.00 3.53
1980 2092 6.092807 CCTTCTACTTTTAGCACTGATTCCAC 59.907 42.308 0.00 0.00 0.00 4.02
1981 2093 6.360370 TCTACTTTTAGCACTGATTCCACT 57.640 37.500 0.00 0.00 0.00 4.00
1982 2094 6.769512 TCTACTTTTAGCACTGATTCCACTT 58.230 36.000 0.00 0.00 0.00 3.16
1983 2095 5.948992 ACTTTTAGCACTGATTCCACTTC 57.051 39.130 0.00 0.00 0.00 3.01
1984 2096 4.452455 ACTTTTAGCACTGATTCCACTTCG 59.548 41.667 0.00 0.00 0.00 3.79
1985 2097 3.678056 TTAGCACTGATTCCACTTCGT 57.322 42.857 0.00 0.00 0.00 3.85
1986 2098 2.550830 AGCACTGATTCCACTTCGTT 57.449 45.000 0.00 0.00 0.00 3.85
1987 2099 3.678056 AGCACTGATTCCACTTCGTTA 57.322 42.857 0.00 0.00 0.00 3.18
1988 2100 3.589988 AGCACTGATTCCACTTCGTTAG 58.410 45.455 0.00 0.00 0.00 2.34
1989 2101 3.258372 AGCACTGATTCCACTTCGTTAGA 59.742 43.478 0.00 0.00 0.00 2.10
1990 2102 3.614616 GCACTGATTCCACTTCGTTAGAG 59.385 47.826 0.00 0.00 0.00 2.43
1991 2103 4.618460 GCACTGATTCCACTTCGTTAGAGA 60.618 45.833 0.00 0.00 0.00 3.10
1992 2104 5.098893 CACTGATTCCACTTCGTTAGAGAG 58.901 45.833 0.00 0.00 0.00 3.20
1993 2105 4.767928 ACTGATTCCACTTCGTTAGAGAGT 59.232 41.667 0.00 0.00 0.00 3.24
1994 2106 5.944599 ACTGATTCCACTTCGTTAGAGAGTA 59.055 40.000 0.00 0.00 0.00 2.59
1995 2107 6.433404 ACTGATTCCACTTCGTTAGAGAGTAA 59.567 38.462 0.00 0.00 0.00 2.24
1996 2108 7.122948 ACTGATTCCACTTCGTTAGAGAGTAAT 59.877 37.037 0.00 0.00 0.00 1.89
2165 4015 5.123227 GTTGAGCTAGGTATTATTGTGGCA 58.877 41.667 0.00 0.00 0.00 4.92
2369 4228 6.211587 TGATGCCTTTGGATTTATTCAGTG 57.788 37.500 0.00 0.00 0.00 3.66
2372 4231 6.855763 TGCCTTTGGATTTATTCAGTGATT 57.144 33.333 0.00 0.00 0.00 2.57
2478 4338 1.532437 CAGCGCAACTCAAACAGATGA 59.468 47.619 11.47 0.00 0.00 2.92
2782 5001 4.076394 TGTCCAACTAAAATTCTTCGGGG 58.924 43.478 0.00 0.00 0.00 5.73
3027 5306 3.828451 TCGGTACAGGTTAGCAGTACTTT 59.172 43.478 14.74 0.00 38.47 2.66
3094 5373 9.449719 AATGGAAGTAAAATCCTAGTGTTACAG 57.550 33.333 0.00 0.00 37.85 2.74
3133 5416 3.056179 TGTGTTCAGTCATCTATTCGCCA 60.056 43.478 0.00 0.00 0.00 5.69
3157 5440 5.078411 TCTGGATAACTTCTGCTCAGTTC 57.922 43.478 0.00 0.00 35.95 3.01
3178 5463 7.478667 CAGTTCGTTTTTACAATAAGCAGCTAG 59.521 37.037 0.00 0.00 0.00 3.42
3179 5464 7.172703 AGTTCGTTTTTACAATAAGCAGCTAGT 59.827 33.333 0.00 0.00 0.00 2.57
3180 5465 6.827641 TCGTTTTTACAATAAGCAGCTAGTG 58.172 36.000 0.00 0.00 0.00 2.74
3182 5467 7.333423 TCGTTTTTACAATAAGCAGCTAGTGAT 59.667 33.333 0.00 0.00 0.00 3.06
3190 5475 9.838339 ACAATAAGCAGCTAGTGATATAAAAGT 57.162 29.630 0.00 0.00 0.00 2.66
3196 5481 7.607991 AGCAGCTAGTGATATAAAAGTGTTGTT 59.392 33.333 0.00 0.00 0.00 2.83
3214 5499 3.702330 TGTTTGAGCCGATGATAGTACG 58.298 45.455 0.00 0.00 0.00 3.67
3220 5505 2.938869 GCCGATGATAGTACGGGTTAC 58.061 52.381 0.00 0.00 45.66 2.50
3225 5523 4.610007 CGATGATAGTACGGGTTACTGTCG 60.610 50.000 4.40 0.00 46.83 4.35
3465 5796 4.521943 CTGAGTTGCTGTTTTCTCTTTCG 58.478 43.478 0.00 0.00 0.00 3.46
3470 5801 2.047040 GCTGTTTTCTCTTTCGCAAGC 58.953 47.619 0.00 0.00 37.18 4.01
3499 5830 6.684555 GCTATTATTGTTCAGCTGTCTTTTCG 59.315 38.462 14.67 0.00 0.00 3.46
3501 5832 0.944386 TGTTCAGCTGTCTTTTCGCC 59.056 50.000 14.67 0.00 0.00 5.54
3531 5862 3.433306 TTTCTGTGGGAACTGTATGGG 57.567 47.619 0.00 0.00 33.13 4.00
3623 5957 2.801679 ACAAATAAAAACTCGGCGTCGA 59.198 40.909 13.29 13.29 43.86 4.20
3661 6025 4.380655 GCACACGTTTGAGGAGAGTAGTAT 60.381 45.833 5.75 0.00 0.00 2.12
3671 6035 9.642343 TTTGAGGAGAGTAGTATATAAAGCAGA 57.358 33.333 0.00 0.00 0.00 4.26
3672 6036 9.815306 TTGAGGAGAGTAGTATATAAAGCAGAT 57.185 33.333 0.00 0.00 0.00 2.90
3673 6037 9.456147 TGAGGAGAGTAGTATATAAAGCAGATC 57.544 37.037 0.00 0.00 0.00 2.75
3702 6066 6.129221 CCGTGTAAGTTACGTAAAATCGTTCA 60.129 38.462 10.11 0.00 43.80 3.18
3709 6073 7.853524 AGTTACGTAAAATCGTTCATTTGTCA 58.146 30.769 10.11 0.00 43.80 3.58
3722 6086 1.129917 TTTGTCACTGGTTCGGGGTA 58.870 50.000 0.00 0.00 0.00 3.69
3748 6112 9.993454 AGTATTCATATCATATCGATGGAATGG 57.007 33.333 8.54 0.40 38.68 3.16
3749 6113 9.212641 GTATTCATATCATATCGATGGAATGGG 57.787 37.037 8.54 0.00 38.68 4.00
3752 6116 3.592898 TCATATCGATGGAATGGGTCG 57.407 47.619 8.54 0.00 36.75 4.79
3909 6278 3.214328 GGTGTCACTGTGATTTTGACCT 58.786 45.455 14.37 0.00 39.16 3.85
3998 8198 3.955524 TTGTCCCTTTAAACTGGTCCA 57.044 42.857 0.00 0.00 0.00 4.02
4009 8209 6.783708 TTAAACTGGTCCAATGAAACTGTT 57.216 33.333 0.00 0.00 0.00 3.16
4017 8217 4.019858 TCCAATGAAACTGTTCCAACACA 58.980 39.130 0.00 0.00 34.70 3.72
4018 8218 4.648762 TCCAATGAAACTGTTCCAACACAT 59.351 37.500 0.00 0.00 34.70 3.21
4019 8219 5.830457 TCCAATGAAACTGTTCCAACACATA 59.170 36.000 0.00 0.00 34.70 2.29
4071 8271 9.631257 TTGATGGCTTCAATTAGATTTATCAGA 57.369 29.630 11.38 0.00 39.44 3.27
4072 8272 9.631257 TGATGGCTTCAATTAGATTTATCAGAA 57.369 29.630 0.00 0.00 0.00 3.02
4075 8275 9.466497 TGGCTTCAATTAGATTTATCAGAAAGT 57.534 29.630 0.00 0.00 0.00 2.66
4088 8288 9.793259 ATTTATCAGAAAGTAGTGGAAGAAACA 57.207 29.630 0.00 0.00 0.00 2.83
4089 8289 9.621629 TTTATCAGAAAGTAGTGGAAGAAACAA 57.378 29.630 0.00 0.00 0.00 2.83
4090 8290 6.920569 TCAGAAAGTAGTGGAAGAAACAAC 57.079 37.500 0.00 0.00 0.00 3.32
4091 8291 6.411376 TCAGAAAGTAGTGGAAGAAACAACA 58.589 36.000 0.00 0.00 0.00 3.33
4092 8292 7.054124 TCAGAAAGTAGTGGAAGAAACAACAT 58.946 34.615 0.00 0.00 0.00 2.71
4093 8293 7.012327 TCAGAAAGTAGTGGAAGAAACAACATG 59.988 37.037 0.00 0.00 0.00 3.21
4094 8294 7.012327 CAGAAAGTAGTGGAAGAAACAACATGA 59.988 37.037 0.00 0.00 0.00 3.07
4095 8295 6.867662 AAGTAGTGGAAGAAACAACATGAG 57.132 37.500 0.00 0.00 0.00 2.90
4096 8296 5.308825 AGTAGTGGAAGAAACAACATGAGG 58.691 41.667 0.00 0.00 0.00 3.86
4097 8297 4.437682 AGTGGAAGAAACAACATGAGGA 57.562 40.909 0.00 0.00 0.00 3.71
4098 8298 4.392940 AGTGGAAGAAACAACATGAGGAG 58.607 43.478 0.00 0.00 0.00 3.69
4099 8299 3.503748 GTGGAAGAAACAACATGAGGAGG 59.496 47.826 0.00 0.00 0.00 4.30
4100 8300 3.394274 TGGAAGAAACAACATGAGGAGGA 59.606 43.478 0.00 0.00 0.00 3.71
4101 8301 4.043310 TGGAAGAAACAACATGAGGAGGAT 59.957 41.667 0.00 0.00 0.00 3.24
4102 8302 4.637977 GGAAGAAACAACATGAGGAGGATC 59.362 45.833 0.00 0.00 0.00 3.36
4122 8322 5.904362 ATCCGAAGATCAAAGGAAAAAGG 57.096 39.130 7.06 0.00 36.25 3.11
4123 8323 4.980573 TCCGAAGATCAAAGGAAAAAGGA 58.019 39.130 0.00 0.00 0.00 3.36
4124 8324 5.381757 TCCGAAGATCAAAGGAAAAAGGAA 58.618 37.500 0.00 0.00 0.00 3.36
4125 8325 5.830991 TCCGAAGATCAAAGGAAAAAGGAAA 59.169 36.000 0.00 0.00 0.00 3.13
4126 8326 6.322712 TCCGAAGATCAAAGGAAAAAGGAAAA 59.677 34.615 0.00 0.00 0.00 2.29
4127 8327 6.642540 CCGAAGATCAAAGGAAAAAGGAAAAG 59.357 38.462 0.00 0.00 0.00 2.27
4128 8328 6.642540 CGAAGATCAAAGGAAAAAGGAAAAGG 59.357 38.462 0.00 0.00 0.00 3.11
4129 8329 5.858381 AGATCAAAGGAAAAAGGAAAAGGC 58.142 37.500 0.00 0.00 0.00 4.35
4130 8330 5.366477 AGATCAAAGGAAAAAGGAAAAGGCA 59.634 36.000 0.00 0.00 0.00 4.75
4131 8331 5.022282 TCAAAGGAAAAAGGAAAAGGCAG 57.978 39.130 0.00 0.00 0.00 4.85
4132 8332 3.475566 AAGGAAAAAGGAAAAGGCAGC 57.524 42.857 0.00 0.00 0.00 5.25
4133 8333 1.694150 AGGAAAAAGGAAAAGGCAGCC 59.306 47.619 1.84 1.84 0.00 4.85
4134 8334 1.270839 GGAAAAAGGAAAAGGCAGCCC 60.271 52.381 8.22 0.00 0.00 5.19
4135 8335 1.694150 GAAAAAGGAAAAGGCAGCCCT 59.306 47.619 8.22 0.00 45.77 5.19
4136 8336 2.694616 AAAAGGAAAAGGCAGCCCTA 57.305 45.000 8.22 0.00 41.90 3.53
4137 8337 2.928036 AAAGGAAAAGGCAGCCCTAT 57.072 45.000 8.22 0.00 41.90 2.57
4138 8338 2.928036 AAGGAAAAGGCAGCCCTATT 57.072 45.000 8.22 0.00 41.90 1.73
4139 8339 4.331159 AAAGGAAAAGGCAGCCCTATTA 57.669 40.909 8.22 0.00 41.90 0.98
4140 8340 3.584733 AGGAAAAGGCAGCCCTATTAG 57.415 47.619 8.22 0.00 41.90 1.73
4141 8341 1.957177 GGAAAAGGCAGCCCTATTAGC 59.043 52.381 8.22 0.00 41.90 3.09
4142 8342 2.423517 GGAAAAGGCAGCCCTATTAGCT 60.424 50.000 8.22 0.00 41.90 3.32
4149 8349 2.629336 AGCCCTATTAGCTGCAGAAC 57.371 50.000 20.43 0.00 39.69 3.01
4150 8350 1.839994 AGCCCTATTAGCTGCAGAACA 59.160 47.619 20.43 0.00 39.69 3.18
4151 8351 2.239654 AGCCCTATTAGCTGCAGAACAA 59.760 45.455 20.43 7.75 39.69 2.83
4152 8352 2.356069 GCCCTATTAGCTGCAGAACAAC 59.644 50.000 20.43 0.00 0.00 3.32
4153 8353 3.609853 CCCTATTAGCTGCAGAACAACA 58.390 45.455 20.43 0.00 0.00 3.33
4154 8354 3.375299 CCCTATTAGCTGCAGAACAACAC 59.625 47.826 20.43 0.00 0.00 3.32
4155 8355 4.256920 CCTATTAGCTGCAGAACAACACT 58.743 43.478 20.43 5.38 0.00 3.55
4156 8356 5.419542 CCTATTAGCTGCAGAACAACACTA 58.580 41.667 20.43 4.27 0.00 2.74
4157 8357 5.292101 CCTATTAGCTGCAGAACAACACTAC 59.708 44.000 20.43 0.00 0.00 2.73
4158 8358 1.884235 AGCTGCAGAACAACACTACC 58.116 50.000 20.43 0.00 0.00 3.18
4159 8359 0.875059 GCTGCAGAACAACACTACCC 59.125 55.000 20.43 0.00 0.00 3.69
4160 8360 1.543429 GCTGCAGAACAACACTACCCT 60.543 52.381 20.43 0.00 0.00 4.34
4161 8361 2.851195 CTGCAGAACAACACTACCCTT 58.149 47.619 8.42 0.00 0.00 3.95
4162 8362 3.805807 GCTGCAGAACAACACTACCCTTA 60.806 47.826 20.43 0.00 0.00 2.69
4163 8363 3.735591 TGCAGAACAACACTACCCTTAC 58.264 45.455 0.00 0.00 0.00 2.34
4164 8364 3.134985 TGCAGAACAACACTACCCTTACA 59.865 43.478 0.00 0.00 0.00 2.41
4165 8365 4.131596 GCAGAACAACACTACCCTTACAA 58.868 43.478 0.00 0.00 0.00 2.41
4166 8366 4.213482 GCAGAACAACACTACCCTTACAAG 59.787 45.833 0.00 0.00 0.00 3.16
4167 8367 5.607477 CAGAACAACACTACCCTTACAAGA 58.393 41.667 0.00 0.00 0.00 3.02
4168 8368 5.465724 CAGAACAACACTACCCTTACAAGAC 59.534 44.000 0.00 0.00 0.00 3.01
4169 8369 3.986277 ACAACACTACCCTTACAAGACG 58.014 45.455 0.00 0.00 0.00 4.18
4170 8370 3.243975 ACAACACTACCCTTACAAGACGG 60.244 47.826 0.00 0.00 0.00 4.79
4171 8371 2.880443 ACACTACCCTTACAAGACGGA 58.120 47.619 0.00 0.00 0.00 4.69
4172 8372 3.233507 ACACTACCCTTACAAGACGGAA 58.766 45.455 0.00 0.00 0.00 4.30
4173 8373 3.006217 ACACTACCCTTACAAGACGGAAC 59.994 47.826 0.00 0.00 0.00 3.62
4186 8386 2.818274 GGAACGTCATCCGCCCAC 60.818 66.667 0.00 0.00 41.42 4.61
4187 8387 2.818274 GAACGTCATCCGCCCACC 60.818 66.667 0.00 0.00 41.42 4.61
4188 8388 3.599285 GAACGTCATCCGCCCACCA 62.599 63.158 0.00 0.00 41.42 4.17
4189 8389 3.894547 AACGTCATCCGCCCACCAC 62.895 63.158 0.00 0.00 41.42 4.16
4190 8390 4.386951 CGTCATCCGCCCACCACA 62.387 66.667 0.00 0.00 0.00 4.17
4191 8391 2.033448 GTCATCCGCCCACCACAA 59.967 61.111 0.00 0.00 0.00 3.33
4192 8392 2.040544 GTCATCCGCCCACCACAAG 61.041 63.158 0.00 0.00 0.00 3.16
4193 8393 2.220586 TCATCCGCCCACCACAAGA 61.221 57.895 0.00 0.00 0.00 3.02
4194 8394 2.040544 CATCCGCCCACCACAAGAC 61.041 63.158 0.00 0.00 0.00 3.01
4195 8395 3.605749 ATCCGCCCACCACAAGACG 62.606 63.158 0.00 0.00 0.00 4.18
4196 8396 4.308458 CCGCCCACCACAAGACGA 62.308 66.667 0.00 0.00 0.00 4.20
4197 8397 3.041940 CGCCCACCACAAGACGAC 61.042 66.667 0.00 0.00 0.00 4.34
4198 8398 3.041940 GCCCACCACAAGACGACG 61.042 66.667 0.00 0.00 0.00 5.12
4199 8399 3.041940 CCCACCACAAGACGACGC 61.042 66.667 0.00 0.00 0.00 5.19
4200 8400 2.279851 CCACCACAAGACGACGCA 60.280 61.111 0.00 0.00 0.00 5.24
4201 8401 2.310233 CCACCACAAGACGACGCAG 61.310 63.158 0.00 0.00 0.00 5.18
4202 8402 2.661866 ACCACAAGACGACGCAGC 60.662 61.111 0.00 0.00 0.00 5.25
4203 8403 2.356313 CCACAAGACGACGCAGCT 60.356 61.111 0.00 0.00 0.00 4.24
4204 8404 2.375766 CCACAAGACGACGCAGCTC 61.376 63.158 0.00 0.00 0.00 4.09
4205 8405 1.372251 CACAAGACGACGCAGCTCT 60.372 57.895 0.00 0.00 0.00 4.09
4206 8406 1.372251 ACAAGACGACGCAGCTCTG 60.372 57.895 0.00 0.00 0.00 3.35
4207 8407 1.081175 CAAGACGACGCAGCTCTGA 60.081 57.895 0.29 0.00 0.00 3.27
4208 8408 1.081108 AAGACGACGCAGCTCTGAC 60.081 57.895 0.29 0.00 0.00 3.51
4209 8409 1.796190 AAGACGACGCAGCTCTGACA 61.796 55.000 0.29 0.00 0.00 3.58
4210 8410 1.371758 GACGACGCAGCTCTGACAA 60.372 57.895 0.29 0.00 0.00 3.18
4211 8411 1.340657 GACGACGCAGCTCTGACAAG 61.341 60.000 0.29 0.00 0.00 3.16
4212 8412 1.081175 CGACGCAGCTCTGACAAGA 60.081 57.895 0.29 0.00 0.00 3.02
4213 8413 1.340657 CGACGCAGCTCTGACAAGAC 61.341 60.000 0.29 0.00 0.00 3.01
4214 8414 0.319040 GACGCAGCTCTGACAAGACA 60.319 55.000 0.29 0.00 0.00 3.41
4215 8415 0.598680 ACGCAGCTCTGACAAGACAC 60.599 55.000 0.29 0.00 0.00 3.67
4216 8416 1.287730 CGCAGCTCTGACAAGACACC 61.288 60.000 0.29 0.00 0.00 4.16
4217 8417 0.250038 GCAGCTCTGACAAGACACCA 60.250 55.000 0.29 0.00 0.00 4.17
4218 8418 1.811558 GCAGCTCTGACAAGACACCAA 60.812 52.381 0.29 0.00 0.00 3.67
4219 8419 2.775890 CAGCTCTGACAAGACACCAAT 58.224 47.619 0.00 0.00 0.00 3.16
4220 8420 2.483106 CAGCTCTGACAAGACACCAATG 59.517 50.000 0.00 0.00 0.00 2.82
4221 8421 2.105477 AGCTCTGACAAGACACCAATGT 59.895 45.455 0.00 0.00 43.71 2.71
4222 8422 2.880890 GCTCTGACAAGACACCAATGTT 59.119 45.455 0.00 0.00 39.95 2.71
4223 8423 3.304257 GCTCTGACAAGACACCAATGTTG 60.304 47.826 0.00 0.00 39.95 3.33
4224 8424 3.879295 CTCTGACAAGACACCAATGTTGT 59.121 43.478 0.00 0.00 39.95 3.32
4251 8451 6.704289 AGTACTCAATATACCGTGCTTGTA 57.296 37.500 0.00 0.00 0.00 2.41
4252 8452 7.104043 AGTACTCAATATACCGTGCTTGTAA 57.896 36.000 0.00 0.00 0.00 2.41
4255 8455 7.478520 ACTCAATATACCGTGCTTGTAAATC 57.521 36.000 0.00 0.00 0.00 2.17
4269 8469 7.484007 GTGCTTGTAAATCTCATCAGTTGATTG 59.516 37.037 0.00 0.00 32.72 2.67
4280 8480 2.886523 TCAGTTGATTGCTGAAAGGTGG 59.113 45.455 0.00 0.00 39.70 4.61
4307 8507 1.076332 CCCTTGCGTTTAGAAGGACG 58.924 55.000 0.00 0.00 41.26 4.79
4310 8510 2.352421 CCTTGCGTTTAGAAGGACGAGA 60.352 50.000 0.00 0.00 41.26 4.04
4319 8519 1.475441 GAAGGACGAGATTCAGCGCG 61.475 60.000 0.00 0.00 37.11 6.86
4404 8608 2.122768 AGAAACTAGGCTGGGAGGATG 58.877 52.381 2.02 0.00 0.00 3.51
4405 8609 2.119495 GAAACTAGGCTGGGAGGATGA 58.881 52.381 2.02 0.00 0.00 2.92
4406 8610 1.799933 AACTAGGCTGGGAGGATGAG 58.200 55.000 2.02 0.00 0.00 2.90
4407 8611 0.937441 ACTAGGCTGGGAGGATGAGA 59.063 55.000 2.02 0.00 0.00 3.27
4408 8612 1.292242 ACTAGGCTGGGAGGATGAGAA 59.708 52.381 2.02 0.00 0.00 2.87
4409 8613 2.090267 ACTAGGCTGGGAGGATGAGAAT 60.090 50.000 2.02 0.00 0.00 2.40
4410 8614 1.138568 AGGCTGGGAGGATGAGAATG 58.861 55.000 0.00 0.00 0.00 2.67
4430 8634 0.529337 AGATGATGAAGCAGACGCGG 60.529 55.000 12.47 0.00 45.49 6.46
4431 8635 2.098842 GATGATGAAGCAGACGCGGC 62.099 60.000 12.47 7.86 45.49 6.53
4432 8636 2.815211 GATGAAGCAGACGCGGCA 60.815 61.111 17.71 0.00 45.49 5.69
4433 8637 2.124983 ATGAAGCAGACGCGGCAT 60.125 55.556 17.71 0.00 45.49 4.40
4442 8649 2.589890 GACGCGGCATTTATCGTCT 58.410 52.632 7.34 0.00 45.31 4.18
4443 8650 0.229753 GACGCGGCATTTATCGTCTG 59.770 55.000 7.34 0.00 45.31 3.51
4448 8655 2.642995 CGGCATTTATCGTCTGCATTG 58.357 47.619 0.00 0.00 37.64 2.82
4487 8698 4.061596 GAGCCCAGCTACATGATTCTTAC 58.938 47.826 0.00 0.00 39.88 2.34
4488 8699 3.713764 AGCCCAGCTACATGATTCTTACT 59.286 43.478 0.00 0.00 36.99 2.24
4489 8700 4.901849 AGCCCAGCTACATGATTCTTACTA 59.098 41.667 0.00 0.00 36.99 1.82
4492 8703 6.463049 GCCCAGCTACATGATTCTTACTAGAA 60.463 42.308 0.00 0.00 44.16 2.10
4505 8716 5.595885 TCTTACTAGAATAGCTGCAGCAAG 58.404 41.667 38.24 27.16 44.39 4.01
4555 8770 1.143305 GATGTGATCGGCGATGGAAG 58.857 55.000 29.20 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.064906 AGGTGATGTGGCCTCATTGAG 60.065 52.381 20.77 6.70 0.00 3.02
311 312 0.879400 GCTCACGCTCATGGATCTGG 60.879 60.000 0.00 0.00 0.00 3.86
312 313 1.213733 CGCTCACGCTCATGGATCTG 61.214 60.000 0.00 0.00 0.00 2.90
313 314 1.067084 CGCTCACGCTCATGGATCT 59.933 57.895 0.00 0.00 0.00 2.75
314 315 1.066422 TCGCTCACGCTCATGGATC 59.934 57.895 0.00 0.00 39.84 3.36
315 316 1.227089 GTCGCTCACGCTCATGGAT 60.227 57.895 0.00 0.00 39.84 3.41
316 317 2.181777 GTCGCTCACGCTCATGGA 59.818 61.111 0.00 0.00 39.84 3.41
317 318 3.250323 CGTCGCTCACGCTCATGG 61.250 66.667 0.00 0.00 42.87 3.66
338 339 3.428100 CCCCCTTTTCTCCCCCTC 58.572 66.667 0.00 0.00 0.00 4.30
362 363 4.222847 CTCTAGGGTTCCGGCCGC 62.223 72.222 22.85 6.08 0.00 6.53
378 379 1.342672 ACCAAATATCCCGTCGCCCT 61.343 55.000 0.00 0.00 0.00 5.19
380 381 1.505425 GTACCAAATATCCCGTCGCC 58.495 55.000 0.00 0.00 0.00 5.54
381 382 1.069668 AGGTACCAAATATCCCGTCGC 59.930 52.381 15.94 0.00 0.00 5.19
382 383 2.363038 TCAGGTACCAAATATCCCGTCG 59.637 50.000 15.94 0.00 0.00 5.12
383 384 3.802675 GCTCAGGTACCAAATATCCCGTC 60.803 52.174 15.94 0.00 0.00 4.79
384 385 2.104281 GCTCAGGTACCAAATATCCCGT 59.896 50.000 15.94 0.00 0.00 5.28
388 389 5.615289 AGTCATGCTCAGGTACCAAATATC 58.385 41.667 15.94 0.00 0.00 1.63
389 390 5.636903 AGTCATGCTCAGGTACCAAATAT 57.363 39.130 15.94 0.00 0.00 1.28
390 391 5.185454 CAAGTCATGCTCAGGTACCAAATA 58.815 41.667 15.94 0.00 0.00 1.40
391 392 4.012374 CAAGTCATGCTCAGGTACCAAAT 58.988 43.478 15.94 0.00 0.00 2.32
392 393 3.181445 ACAAGTCATGCTCAGGTACCAAA 60.181 43.478 15.94 0.00 0.00 3.28
393 394 2.371841 ACAAGTCATGCTCAGGTACCAA 59.628 45.455 15.94 0.13 0.00 3.67
394 395 1.977854 ACAAGTCATGCTCAGGTACCA 59.022 47.619 15.94 0.00 0.00 3.25
395 396 2.744202 CAACAAGTCATGCTCAGGTACC 59.256 50.000 2.73 2.73 0.00 3.34
396 397 2.744202 CCAACAAGTCATGCTCAGGTAC 59.256 50.000 0.00 0.00 0.00 3.34
470 471 0.034896 TGAACGCCTTCAGGTTCCTC 59.965 55.000 1.92 0.00 41.36 3.71
478 479 2.334946 GCAGCCATGAACGCCTTCA 61.335 57.895 0.47 0.47 40.77 3.02
824 858 2.548480 CGACAAGTCAGGGAGAAAAACC 59.452 50.000 0.72 0.00 0.00 3.27
912 958 0.983378 CTGGGACCGGGAAAGGAGAT 60.983 60.000 6.32 0.00 34.73 2.75
913 959 1.612442 CTGGGACCGGGAAAGGAGA 60.612 63.158 6.32 0.00 34.73 3.71
914 960 2.670148 CCTGGGACCGGGAAAGGAG 61.670 68.421 10.88 0.00 45.10 3.69
915 961 2.609610 CCTGGGACCGGGAAAGGA 60.610 66.667 10.88 0.00 45.10 3.36
959 1023 0.738975 AGGCGACGATCGAATCTTCA 59.261 50.000 24.34 0.00 43.74 3.02
962 1026 0.738975 TTCAGGCGACGATCGAATCT 59.261 50.000 24.34 10.36 43.74 2.40
969 1033 1.000283 GATCAGGATTCAGGCGACGAT 60.000 52.381 0.00 0.00 0.00 3.73
973 1037 1.742146 CCGATCAGGATTCAGGCGA 59.258 57.895 0.00 0.00 45.00 5.54
974 1038 1.958205 GCCGATCAGGATTCAGGCG 60.958 63.158 7.64 0.00 45.00 5.52
975 1039 1.958205 CGCCGATCAGGATTCAGGC 60.958 63.158 7.64 11.72 45.00 4.85
976 1040 1.301244 CCGCCGATCAGGATTCAGG 60.301 63.158 7.64 0.00 45.00 3.86
977 1041 1.958205 GCCGCCGATCAGGATTCAG 60.958 63.158 7.64 0.00 45.00 3.02
978 1042 2.108976 GCCGCCGATCAGGATTCA 59.891 61.111 7.64 0.00 45.00 2.57
979 1043 3.038417 CGCCGCCGATCAGGATTC 61.038 66.667 7.64 0.00 45.00 2.52
980 1044 4.609018 CCGCCGCCGATCAGGATT 62.609 66.667 7.64 0.00 45.00 3.01
1055 1124 2.327081 GCGAGATAAGATAACGCCGA 57.673 50.000 0.00 0.00 42.79 5.54
1068 1137 0.099082 GACCGAAGACGAAGCGAGAT 59.901 55.000 0.00 0.00 42.66 2.75
1072 1141 2.126965 ACGACCGAAGACGAAGCG 60.127 61.111 0.00 0.00 42.66 4.68
1084 1153 2.062519 GACAAGAAGAGAAGCACGACC 58.937 52.381 0.00 0.00 0.00 4.79
1104 1173 1.090052 GTAGCTAACCAGGCAAGGCG 61.090 60.000 0.00 0.00 0.00 5.52
1120 1192 6.127814 ACAATTCAGCCTTGATCAATGTGTAG 60.128 38.462 8.96 0.00 32.27 2.74
1123 1195 4.862574 CACAATTCAGCCTTGATCAATGTG 59.137 41.667 16.02 16.02 32.27 3.21
1126 1205 3.767673 AGCACAATTCAGCCTTGATCAAT 59.232 39.130 8.96 0.00 32.27 2.57
1128 1207 2.799017 AGCACAATTCAGCCTTGATCA 58.201 42.857 0.00 0.00 32.27 2.92
1129 1208 3.242543 CGTAGCACAATTCAGCCTTGATC 60.243 47.826 0.00 0.00 32.27 2.92
1134 1213 2.555199 GATCGTAGCACAATTCAGCCT 58.445 47.619 0.00 0.00 0.00 4.58
1135 1214 1.258982 CGATCGTAGCACAATTCAGCC 59.741 52.381 7.03 0.00 0.00 4.85
1146 1225 4.352039 CCATGATATGGTACGATCGTAGC 58.648 47.826 37.64 37.64 45.54 3.58
1159 1238 2.509166 AGATGCAGCCCCATGATATG 57.491 50.000 0.00 0.00 0.00 1.78
1160 1239 3.455177 CTCTAGATGCAGCCCCATGATAT 59.545 47.826 0.00 0.00 0.00 1.63
1161 1240 2.836372 CTCTAGATGCAGCCCCATGATA 59.164 50.000 0.00 0.00 0.00 2.15
1162 1241 1.629353 CTCTAGATGCAGCCCCATGAT 59.371 52.381 0.00 0.00 0.00 2.45
1163 1242 1.054231 CTCTAGATGCAGCCCCATGA 58.946 55.000 0.00 0.00 0.00 3.07
1164 1243 0.605860 GCTCTAGATGCAGCCCCATG 60.606 60.000 0.00 0.00 0.00 3.66
1170 1249 1.538634 CCTCAGTGCTCTAGATGCAGC 60.539 57.143 14.63 0.00 41.41 5.25
1183 1262 6.486657 TCAAACAGAAGGATTTAACCTCAGTG 59.513 38.462 0.00 0.00 39.62 3.66
1185 1264 7.609532 AGATCAAACAGAAGGATTTAACCTCAG 59.390 37.037 0.00 0.00 39.62 3.35
1187 1266 7.627300 GCAGATCAAACAGAAGGATTTAACCTC 60.627 40.741 0.00 0.00 39.62 3.85
1195 1274 4.018597 AGGAAGCAGATCAAACAGAAGGAT 60.019 41.667 0.00 0.00 0.00 3.24
1198 1277 3.370366 CGAGGAAGCAGATCAAACAGAAG 59.630 47.826 0.00 0.00 0.00 2.85
1204 1283 0.615331 AGCCGAGGAAGCAGATCAAA 59.385 50.000 0.00 0.00 0.00 2.69
1213 1292 4.142881 GCAAGTAAGTAAAAGCCGAGGAAG 60.143 45.833 0.00 0.00 0.00 3.46
1244 1323 1.740025 GCAGTACCACAATTGAGGCTC 59.260 52.381 20.41 7.79 0.00 4.70
1245 1324 1.352352 AGCAGTACCACAATTGAGGCT 59.648 47.619 20.41 9.35 0.00 4.58
1248 1330 1.470098 GGCAGCAGTACCACAATTGAG 59.530 52.381 13.59 3.79 0.00 3.02
1257 1339 4.736126 AATTTAATTGGGCAGCAGTACC 57.264 40.909 0.00 0.00 0.00 3.34
1266 1348 9.284968 TCTATCAACTAGCTAATTTAATTGGGC 57.715 33.333 0.00 5.13 0.00 5.36
1279 1361 6.482641 TCGTTCGAATACTCTATCAACTAGCT 59.517 38.462 0.00 0.00 0.00 3.32
1291 1380 6.128634 ACTGTCCATTTTTCGTTCGAATACTC 60.129 38.462 0.00 0.00 0.00 2.59
1292 1381 5.699458 ACTGTCCATTTTTCGTTCGAATACT 59.301 36.000 0.00 0.00 0.00 2.12
1293 1382 5.923665 ACTGTCCATTTTTCGTTCGAATAC 58.076 37.500 0.00 0.00 0.00 1.89
1294 1383 6.548441 AACTGTCCATTTTTCGTTCGAATA 57.452 33.333 0.00 1.52 0.00 1.75
1296 1385 4.886247 AACTGTCCATTTTTCGTTCGAA 57.114 36.364 3.47 3.47 0.00 3.71
1297 1386 4.886247 AAACTGTCCATTTTTCGTTCGA 57.114 36.364 0.00 0.00 0.00 3.71
1298 1387 5.115021 GCTTAAACTGTCCATTTTTCGTTCG 59.885 40.000 0.00 0.00 0.00 3.95
1299 1388 6.206498 AGCTTAAACTGTCCATTTTTCGTTC 58.794 36.000 0.00 0.00 0.00 3.95
1300 1389 6.144078 AGCTTAAACTGTCCATTTTTCGTT 57.856 33.333 0.00 0.00 0.00 3.85
1301 1390 5.767816 AGCTTAAACTGTCCATTTTTCGT 57.232 34.783 0.00 0.00 0.00 3.85
1302 1391 6.682863 CGATAGCTTAAACTGTCCATTTTTCG 59.317 38.462 0.00 0.00 0.00 3.46
1303 1392 7.748847 TCGATAGCTTAAACTGTCCATTTTTC 58.251 34.615 0.00 0.00 0.00 2.29
1304 1393 7.681939 TCGATAGCTTAAACTGTCCATTTTT 57.318 32.000 0.00 0.00 0.00 1.94
1315 1404 4.375506 GCGCTCTGAATCGATAGCTTAAAC 60.376 45.833 14.28 0.00 32.73 2.01
1316 1405 3.736252 GCGCTCTGAATCGATAGCTTAAA 59.264 43.478 14.28 0.00 32.73 1.52
1318 1407 2.351835 GGCGCTCTGAATCGATAGCTTA 60.352 50.000 7.64 0.00 32.73 3.09
1352 1441 7.538303 AACAAAATTCCGGCAATGAATTATC 57.462 32.000 0.00 0.00 40.57 1.75
1354 1443 6.533367 GCTAACAAAATTCCGGCAATGAATTA 59.467 34.615 0.00 0.00 40.57 1.40
1360 1450 3.951775 TGCTAACAAAATTCCGGCAAT 57.048 38.095 0.00 0.00 0.00 3.56
1381 1471 5.016051 TGCCACTCTTGTGCAAAAATAAA 57.984 34.783 0.00 0.00 42.54 1.40
1404 1494 1.065491 CCTCGTCCCCATGAACAATGA 60.065 52.381 0.00 0.00 38.72 2.57
1405 1495 1.340017 ACCTCGTCCCCATGAACAATG 60.340 52.381 0.00 0.00 35.89 2.82
1447 1537 8.618702 TCTAATGACTACCCGATTCTTAGTAG 57.381 38.462 0.00 0.00 38.50 2.57
1453 1543 3.574826 GCCTCTAATGACTACCCGATTCT 59.425 47.826 0.00 0.00 0.00 2.40
1460 1550 4.737855 TTGACTGCCTCTAATGACTACC 57.262 45.455 0.00 0.00 0.00 3.18
1461 1551 6.398918 TCTTTTGACTGCCTCTAATGACTAC 58.601 40.000 0.00 0.00 0.00 2.73
1463 1553 5.489792 TCTTTTGACTGCCTCTAATGACT 57.510 39.130 0.00 0.00 0.00 3.41
1470 1560 3.930634 GCAAATCTTTTGACTGCCTCT 57.069 42.857 4.24 0.00 35.65 3.69
1474 1564 3.054878 CACTGGCAAATCTTTTGACTGC 58.945 45.455 11.28 0.00 38.93 4.40
1475 1565 4.046462 CACACTGGCAAATCTTTTGACTG 58.954 43.478 10.15 10.15 33.29 3.51
1476 1566 3.701040 ACACACTGGCAAATCTTTTGACT 59.299 39.130 7.30 0.00 0.00 3.41
1477 1567 3.798337 CACACACTGGCAAATCTTTTGAC 59.202 43.478 4.24 1.56 0.00 3.18
1478 1568 3.737663 GCACACACTGGCAAATCTTTTGA 60.738 43.478 4.24 0.00 0.00 2.69
1479 1569 2.540931 GCACACACTGGCAAATCTTTTG 59.459 45.455 0.00 0.00 0.00 2.44
1480 1570 2.431782 AGCACACACTGGCAAATCTTTT 59.568 40.909 0.00 0.00 0.00 2.27
1481 1571 2.034124 AGCACACACTGGCAAATCTTT 58.966 42.857 0.00 0.00 0.00 2.52
1482 1572 1.338973 CAGCACACACTGGCAAATCTT 59.661 47.619 0.00 0.00 33.85 2.40
1529 1620 2.957474 CCTGACCTCAAAGGGGAAAAA 58.043 47.619 0.00 0.00 40.58 1.94
1530 1621 1.480498 GCCTGACCTCAAAGGGGAAAA 60.480 52.381 0.00 0.00 40.58 2.29
1531 1622 0.112412 GCCTGACCTCAAAGGGGAAA 59.888 55.000 0.00 0.00 40.58 3.13
1557 1648 4.990543 TGAATTTGCACTACTGACTTCG 57.009 40.909 0.00 0.00 0.00 3.79
1572 1663 4.778213 TGCTAGCTACCTCCATGAATTT 57.222 40.909 17.23 0.00 0.00 1.82
1603 1694 7.852971 TGATAGGTTTATTTTCCCACTAACG 57.147 36.000 0.00 0.00 0.00 3.18
1621 1712 7.720957 TGATTTACATTCCAGACCAATGATAGG 59.279 37.037 0.00 0.00 35.54 2.57
1622 1713 8.681486 TGATTTACATTCCAGACCAATGATAG 57.319 34.615 0.00 0.00 35.54 2.08
1630 1721 7.630242 TTTCATCTGATTTACATTCCAGACC 57.370 36.000 0.00 0.00 38.32 3.85
1665 1756 1.335872 GCACCATTTTTCTGTGGTCCG 60.336 52.381 0.00 0.00 45.30 4.79
1684 1775 4.439305 TGCAAGTTATCACCAAATCAGC 57.561 40.909 0.00 0.00 0.00 4.26
1687 1778 6.156932 GCTTTTGCAAGTTATCACCAAATC 57.843 37.500 0.00 0.00 46.58 2.17
1813 1925 4.282195 CCTCATAAAGTACCAGGAGCTAGG 59.718 50.000 0.00 0.00 0.00 3.02
1818 1930 4.030913 TCCACCTCATAAAGTACCAGGAG 58.969 47.826 0.00 0.00 0.00 3.69
1938 2050 2.533266 AGGGCGCACTATATCAGTTG 57.467 50.000 12.52 0.00 34.26 3.16
1939 2051 2.700897 AGAAGGGCGCACTATATCAGTT 59.299 45.455 15.36 0.00 34.26 3.16
1949 2061 1.397343 GCTAAAAGTAGAAGGGCGCAC 59.603 52.381 10.83 5.15 0.00 5.34
1950 2062 1.002659 TGCTAAAAGTAGAAGGGCGCA 59.997 47.619 10.83 0.00 0.00 6.09
1951 2063 1.397343 GTGCTAAAAGTAGAAGGGCGC 59.603 52.381 0.00 0.00 0.00 6.53
1952 2064 2.673368 CAGTGCTAAAAGTAGAAGGGCG 59.327 50.000 0.00 0.00 0.00 6.13
1953 2065 3.939066 TCAGTGCTAAAAGTAGAAGGGC 58.061 45.455 0.00 0.00 0.00 5.19
1954 2066 5.586643 GGAATCAGTGCTAAAAGTAGAAGGG 59.413 44.000 0.00 0.00 0.00 3.95
1955 2067 6.092807 GTGGAATCAGTGCTAAAAGTAGAAGG 59.907 42.308 0.00 0.00 0.00 3.46
1956 2068 6.876257 AGTGGAATCAGTGCTAAAAGTAGAAG 59.124 38.462 0.00 0.00 0.00 2.85
1957 2069 6.769512 AGTGGAATCAGTGCTAAAAGTAGAA 58.230 36.000 0.00 0.00 0.00 2.10
1958 2070 6.360370 AGTGGAATCAGTGCTAAAAGTAGA 57.640 37.500 0.00 0.00 0.00 2.59
1959 2071 6.183360 CGAAGTGGAATCAGTGCTAAAAGTAG 60.183 42.308 0.00 0.00 0.00 2.57
1960 2072 5.637810 CGAAGTGGAATCAGTGCTAAAAGTA 59.362 40.000 0.00 0.00 0.00 2.24
1961 2073 4.452455 CGAAGTGGAATCAGTGCTAAAAGT 59.548 41.667 0.00 0.00 0.00 2.66
1962 2074 4.452455 ACGAAGTGGAATCAGTGCTAAAAG 59.548 41.667 0.00 0.00 42.51 2.27
1963 2075 4.385825 ACGAAGTGGAATCAGTGCTAAAA 58.614 39.130 0.00 0.00 42.51 1.52
1964 2076 4.002906 ACGAAGTGGAATCAGTGCTAAA 57.997 40.909 0.00 0.00 42.51 1.85
1965 2077 3.678056 ACGAAGTGGAATCAGTGCTAA 57.322 42.857 0.00 0.00 42.51 3.09
1966 2078 3.678056 AACGAAGTGGAATCAGTGCTA 57.322 42.857 0.00 0.00 45.00 3.49
1967 2079 2.550830 AACGAAGTGGAATCAGTGCT 57.449 45.000 0.00 0.00 45.00 4.40
1968 2080 3.585862 TCTAACGAAGTGGAATCAGTGC 58.414 45.455 0.00 0.00 45.00 4.40
1969 2081 5.060662 TCTCTAACGAAGTGGAATCAGTG 57.939 43.478 0.00 0.00 45.00 3.66
1970 2082 4.767928 ACTCTCTAACGAAGTGGAATCAGT 59.232 41.667 0.00 0.00 45.00 3.41
1971 2083 5.317733 ACTCTCTAACGAAGTGGAATCAG 57.682 43.478 0.00 0.00 45.00 2.90
1972 2084 6.829229 TTACTCTCTAACGAAGTGGAATCA 57.171 37.500 0.00 0.00 45.00 2.57
1973 2085 7.221067 CACATTACTCTCTAACGAAGTGGAATC 59.779 40.741 0.00 0.00 45.00 2.52
1974 2086 7.036220 CACATTACTCTCTAACGAAGTGGAAT 58.964 38.462 0.00 0.00 45.00 3.01
1975 2087 6.387465 CACATTACTCTCTAACGAAGTGGAA 58.613 40.000 0.00 0.00 45.00 3.53
1976 2088 5.621555 GCACATTACTCTCTAACGAAGTGGA 60.622 44.000 0.00 0.00 45.00 4.02
1977 2089 4.563184 GCACATTACTCTCTAACGAAGTGG 59.437 45.833 0.00 0.00 45.00 4.00
1978 2090 4.263209 CGCACATTACTCTCTAACGAAGTG 59.737 45.833 0.00 0.00 45.00 3.16
1980 2092 3.240861 GCGCACATTACTCTCTAACGAAG 59.759 47.826 0.30 0.00 0.00 3.79
1981 2093 3.119602 AGCGCACATTACTCTCTAACGAA 60.120 43.478 11.47 0.00 0.00 3.85
1982 2094 2.422479 AGCGCACATTACTCTCTAACGA 59.578 45.455 11.47 0.00 0.00 3.85
1983 2095 2.531912 CAGCGCACATTACTCTCTAACG 59.468 50.000 11.47 0.00 0.00 3.18
1984 2096 2.860735 CCAGCGCACATTACTCTCTAAC 59.139 50.000 11.47 0.00 0.00 2.34
1985 2097 2.496070 ACCAGCGCACATTACTCTCTAA 59.504 45.455 11.47 0.00 0.00 2.10
1986 2098 2.100197 ACCAGCGCACATTACTCTCTA 58.900 47.619 11.47 0.00 0.00 2.43
1987 2099 0.898320 ACCAGCGCACATTACTCTCT 59.102 50.000 11.47 0.00 0.00 3.10
1988 2100 2.159226 ACTACCAGCGCACATTACTCTC 60.159 50.000 11.47 0.00 0.00 3.20
1989 2101 1.825474 ACTACCAGCGCACATTACTCT 59.175 47.619 11.47 0.00 0.00 3.24
1990 2102 2.295253 ACTACCAGCGCACATTACTC 57.705 50.000 11.47 0.00 0.00 2.59
1991 2103 2.233922 AGAACTACCAGCGCACATTACT 59.766 45.455 11.47 0.00 0.00 2.24
1992 2104 2.348666 CAGAACTACCAGCGCACATTAC 59.651 50.000 11.47 0.00 0.00 1.89
1993 2105 2.616960 CAGAACTACCAGCGCACATTA 58.383 47.619 11.47 0.00 0.00 1.90
1994 2106 1.442769 CAGAACTACCAGCGCACATT 58.557 50.000 11.47 0.00 0.00 2.71
1995 2107 1.021390 GCAGAACTACCAGCGCACAT 61.021 55.000 11.47 0.00 0.00 3.21
1996 2108 1.667830 GCAGAACTACCAGCGCACA 60.668 57.895 11.47 0.00 0.00 4.57
2165 4015 4.338118 CCATACGCCCATGTTTTATCACTT 59.662 41.667 0.00 0.00 0.00 3.16
2290 4142 3.432933 CCCGCAAAGTCCATTTCAAAATG 59.567 43.478 8.23 8.23 44.12 2.32
2377 4236 9.917129 TCTCTGTATTGAAGATAACACGTTAAA 57.083 29.630 0.00 0.00 0.00 1.52
2378 4237 9.569167 CTCTCTGTATTGAAGATAACACGTTAA 57.431 33.333 0.00 0.00 0.00 2.01
2379 4238 7.701078 GCTCTCTGTATTGAAGATAACACGTTA 59.299 37.037 0.00 0.00 0.00 3.18
2381 4240 6.037098 GCTCTCTGTATTGAAGATAACACGT 58.963 40.000 0.00 0.00 0.00 4.49
2382 4241 6.036470 TGCTCTCTGTATTGAAGATAACACG 58.964 40.000 0.00 0.00 0.00 4.49
2383 4242 7.038659 ACTGCTCTCTGTATTGAAGATAACAC 58.961 38.462 0.00 0.00 0.00 3.32
2385 4244 9.243637 CTTACTGCTCTCTGTATTGAAGATAAC 57.756 37.037 0.00 0.00 0.00 1.89
2387 4246 8.753497 TCTTACTGCTCTCTGTATTGAAGATA 57.247 34.615 0.00 0.00 0.00 1.98
2388 4247 7.652524 TCTTACTGCTCTCTGTATTGAAGAT 57.347 36.000 0.00 0.00 0.00 2.40
2390 4249 8.196771 AGATTCTTACTGCTCTCTGTATTGAAG 58.803 37.037 0.00 0.00 30.99 3.02
2391 4250 8.072321 AGATTCTTACTGCTCTCTGTATTGAA 57.928 34.615 0.00 0.00 31.46 2.69
2392 4251 7.652524 AGATTCTTACTGCTCTCTGTATTGA 57.347 36.000 0.00 0.00 0.00 2.57
2393 4252 9.462174 CTTAGATTCTTACTGCTCTCTGTATTG 57.538 37.037 0.00 0.00 0.00 1.90
2478 4338 0.613777 GTGTCCCAGAATTCGTCCCT 59.386 55.000 0.00 0.00 0.00 4.20
2480 4340 1.726853 CTGTGTCCCAGAATTCGTCC 58.273 55.000 0.00 0.00 44.49 4.79
2483 4343 1.363744 GAGCTGTGTCCCAGAATTCG 58.636 55.000 0.00 0.00 44.49 3.34
2641 4501 6.464834 GCGACAGAAGTATCAAAATAAAACCG 59.535 38.462 0.00 0.00 0.00 4.44
2779 4998 1.248486 GTCCTGAACTTTTCTGCCCC 58.752 55.000 0.00 0.00 0.00 5.80
2782 5001 2.576615 ACAGGTCCTGAACTTTTCTGC 58.423 47.619 26.18 0.00 35.18 4.26
2824 5043 7.706607 GGGGTCATTATCAACTTTTAAGAATGC 59.293 37.037 0.00 0.00 0.00 3.56
2825 5044 8.971073 AGGGGTCATTATCAACTTTTAAGAATG 58.029 33.333 0.00 0.00 0.00 2.67
3072 5351 7.618137 TCCCTGTAACACTAGGATTTTACTTC 58.382 38.462 0.00 0.00 36.11 3.01
3078 5357 5.091552 TGACTCCCTGTAACACTAGGATTT 58.908 41.667 0.00 0.00 36.11 2.17
3087 5366 5.762179 ATGAAATCTGACTCCCTGTAACA 57.238 39.130 0.00 0.00 0.00 2.41
3089 5368 6.430925 CACAAATGAAATCTGACTCCCTGTAA 59.569 38.462 0.00 0.00 0.00 2.41
3090 5369 5.939883 CACAAATGAAATCTGACTCCCTGTA 59.060 40.000 0.00 0.00 0.00 2.74
3094 5373 5.241506 TGAACACAAATGAAATCTGACTCCC 59.758 40.000 0.00 0.00 0.00 4.30
3133 5416 5.690464 ACTGAGCAGAAGTTATCCAGATT 57.310 39.130 4.21 0.00 0.00 2.40
3157 5440 6.827641 TCACTAGCTGCTTATTGTAAAAACG 58.172 36.000 7.79 0.00 0.00 3.60
3178 5463 6.523201 CGGCTCAAACAACACTTTTATATCAC 59.477 38.462 0.00 0.00 0.00 3.06
3179 5464 6.428465 TCGGCTCAAACAACACTTTTATATCA 59.572 34.615 0.00 0.00 0.00 2.15
3180 5465 6.837992 TCGGCTCAAACAACACTTTTATATC 58.162 36.000 0.00 0.00 0.00 1.63
3182 5467 6.428465 TCATCGGCTCAAACAACACTTTTATA 59.572 34.615 0.00 0.00 0.00 0.98
3185 5470 3.380004 TCATCGGCTCAAACAACACTTTT 59.620 39.130 0.00 0.00 0.00 2.27
3186 5471 2.948979 TCATCGGCTCAAACAACACTTT 59.051 40.909 0.00 0.00 0.00 2.66
3189 5474 3.684788 ACTATCATCGGCTCAAACAACAC 59.315 43.478 0.00 0.00 0.00 3.32
3190 5475 3.937814 ACTATCATCGGCTCAAACAACA 58.062 40.909 0.00 0.00 0.00 3.33
3196 5481 1.611977 CCCGTACTATCATCGGCTCAA 59.388 52.381 0.00 0.00 42.48 3.02
3214 5499 1.737793 CAAAGCATCCGACAGTAACCC 59.262 52.381 0.00 0.00 0.00 4.11
3220 5505 4.797471 TCAAAATTCAAAGCATCCGACAG 58.203 39.130 0.00 0.00 0.00 3.51
3225 5523 5.055812 TGGTGTTCAAAATTCAAAGCATCC 58.944 37.500 0.00 0.00 0.00 3.51
3264 5595 2.030274 GCCATACTTGCAAAACCGTCTT 60.030 45.455 0.00 0.00 0.00 3.01
3470 5801 3.310774 ACAGCTGAACAATAATAGCGCAG 59.689 43.478 23.35 0.00 40.92 5.18
3499 5830 2.163613 CCCACAGAAATTAGTTTCGGGC 59.836 50.000 13.70 0.00 46.58 6.13
3501 5832 4.760204 AGTTCCCACAGAAATTAGTTTCGG 59.240 41.667 8.85 8.85 46.58 4.30
3623 5957 1.262151 GTGTGCACGTCCGTTTTATGT 59.738 47.619 13.13 0.00 0.00 2.29
3661 6025 4.848562 ACACGGATCGATCTGCTTTATA 57.151 40.909 29.95 0.00 36.64 0.98
3671 6035 5.484173 TTACGTAACTTACACGGATCGAT 57.516 39.130 3.29 0.00 43.59 3.59
3672 6036 4.937696 TTACGTAACTTACACGGATCGA 57.062 40.909 3.29 0.00 43.59 3.59
3673 6037 5.990745 TTTTACGTAACTTACACGGATCG 57.009 39.130 7.70 0.00 43.59 3.69
3702 6066 0.476771 ACCCCGAACCAGTGACAAAT 59.523 50.000 0.00 0.00 0.00 2.32
3709 6073 2.823959 TGAATACTACCCCGAACCAGT 58.176 47.619 0.00 0.00 0.00 4.00
3722 6086 9.993454 CCATTCCATCGATATGATATGAATACT 57.007 33.333 8.00 0.00 36.42 2.12
3748 6112 1.207329 AGCCAATGACCTTCTACGACC 59.793 52.381 0.00 0.00 0.00 4.79
3749 6113 2.674796 AGCCAATGACCTTCTACGAC 57.325 50.000 0.00 0.00 0.00 4.34
3752 6116 5.428253 TGTTGATAGCCAATGACCTTCTAC 58.572 41.667 0.00 0.00 37.08 2.59
3821 6186 2.965831 AGACAGCTCAAGGACTACAACA 59.034 45.455 0.00 0.00 0.00 3.33
3894 6263 3.674997 ACGCATAGGTCAAAATCACAGT 58.325 40.909 0.00 0.00 0.00 3.55
3943 6314 3.118261 TCAAGCACTCTGTCCCCATTATC 60.118 47.826 0.00 0.00 0.00 1.75
3998 8198 7.288810 ACATATGTGTTGGAACAGTTTCATT 57.711 32.000 7.78 0.00 42.39 2.57
4027 8227 6.594937 GCCATCAATTTGCTGGATCTTAAAAA 59.405 34.615 20.65 0.00 35.77 1.94
4029 8229 5.422970 AGCCATCAATTTGCTGGATCTTAAA 59.577 36.000 20.65 0.00 35.77 1.52
4032 8232 3.371965 AGCCATCAATTTGCTGGATCTT 58.628 40.909 20.65 2.78 35.77 2.40
4033 8233 3.028094 AGCCATCAATTTGCTGGATCT 57.972 42.857 20.65 8.17 35.77 2.75
4034 8234 3.131577 TGAAGCCATCAATTTGCTGGATC 59.868 43.478 20.65 16.82 35.77 3.36
4035 8235 3.101437 TGAAGCCATCAATTTGCTGGAT 58.899 40.909 20.65 13.11 35.77 3.41
4036 8236 2.527497 TGAAGCCATCAATTTGCTGGA 58.473 42.857 20.65 0.00 35.77 3.86
4037 8237 3.322211 TTGAAGCCATCAATTTGCTGG 57.678 42.857 13.72 13.72 43.08 4.85
4046 8246 9.631257 TTCTGATAAATCTAATTGAAGCCATCA 57.369 29.630 0.00 0.00 35.85 3.07
4062 8262 9.793259 TGTTTCTTCCACTACTTTCTGATAAAT 57.207 29.630 0.00 0.00 0.00 1.40
4063 8263 9.621629 TTGTTTCTTCCACTACTTTCTGATAAA 57.378 29.630 0.00 0.00 0.00 1.40
4064 8264 9.052759 GTTGTTTCTTCCACTACTTTCTGATAA 57.947 33.333 0.00 0.00 0.00 1.75
4065 8265 8.208224 TGTTGTTTCTTCCACTACTTTCTGATA 58.792 33.333 0.00 0.00 0.00 2.15
4066 8266 7.054124 TGTTGTTTCTTCCACTACTTTCTGAT 58.946 34.615 0.00 0.00 0.00 2.90
4067 8267 6.411376 TGTTGTTTCTTCCACTACTTTCTGA 58.589 36.000 0.00 0.00 0.00 3.27
4068 8268 6.677781 TGTTGTTTCTTCCACTACTTTCTG 57.322 37.500 0.00 0.00 0.00 3.02
4069 8269 7.054124 TCATGTTGTTTCTTCCACTACTTTCT 58.946 34.615 0.00 0.00 0.00 2.52
4070 8270 7.259290 TCATGTTGTTTCTTCCACTACTTTC 57.741 36.000 0.00 0.00 0.00 2.62
4071 8271 6.263168 CCTCATGTTGTTTCTTCCACTACTTT 59.737 38.462 0.00 0.00 0.00 2.66
4072 8272 5.765182 CCTCATGTTGTTTCTTCCACTACTT 59.235 40.000 0.00 0.00 0.00 2.24
4073 8273 5.071788 TCCTCATGTTGTTTCTTCCACTACT 59.928 40.000 0.00 0.00 0.00 2.57
4074 8274 5.305585 TCCTCATGTTGTTTCTTCCACTAC 58.694 41.667 0.00 0.00 0.00 2.73
4075 8275 5.513094 CCTCCTCATGTTGTTTCTTCCACTA 60.513 44.000 0.00 0.00 0.00 2.74
4076 8276 4.392940 CTCCTCATGTTGTTTCTTCCACT 58.607 43.478 0.00 0.00 0.00 4.00
4077 8277 3.503748 CCTCCTCATGTTGTTTCTTCCAC 59.496 47.826 0.00 0.00 0.00 4.02
4078 8278 3.394274 TCCTCCTCATGTTGTTTCTTCCA 59.606 43.478 0.00 0.00 0.00 3.53
4079 8279 4.021102 TCCTCCTCATGTTGTTTCTTCC 57.979 45.455 0.00 0.00 0.00 3.46
4080 8280 4.637977 GGATCCTCCTCATGTTGTTTCTTC 59.362 45.833 3.84 0.00 32.53 2.87
4081 8281 4.593956 GGATCCTCCTCATGTTGTTTCTT 58.406 43.478 3.84 0.00 32.53 2.52
4082 8282 3.369892 CGGATCCTCCTCATGTTGTTTCT 60.370 47.826 10.75 0.00 33.30 2.52
4083 8283 2.939103 CGGATCCTCCTCATGTTGTTTC 59.061 50.000 10.75 0.00 33.30 2.78
4084 8284 2.571653 TCGGATCCTCCTCATGTTGTTT 59.428 45.455 10.75 0.00 33.30 2.83
4085 8285 2.187958 TCGGATCCTCCTCATGTTGTT 58.812 47.619 10.75 0.00 33.30 2.83
4086 8286 1.866015 TCGGATCCTCCTCATGTTGT 58.134 50.000 10.75 0.00 33.30 3.32
4087 8287 2.432146 TCTTCGGATCCTCCTCATGTTG 59.568 50.000 10.75 0.00 33.30 3.33
4088 8288 2.752030 TCTTCGGATCCTCCTCATGTT 58.248 47.619 10.75 0.00 33.30 2.71
4089 8289 2.461300 TCTTCGGATCCTCCTCATGT 57.539 50.000 10.75 0.00 33.30 3.21
4090 8290 3.591196 GATCTTCGGATCCTCCTCATG 57.409 52.381 10.75 0.00 43.62 3.07
4100 8300 5.570320 TCCTTTTTCCTTTGATCTTCGGAT 58.430 37.500 0.00 0.00 37.39 4.18
4101 8301 4.980573 TCCTTTTTCCTTTGATCTTCGGA 58.019 39.130 0.00 0.00 0.00 4.55
4102 8302 5.705609 TTCCTTTTTCCTTTGATCTTCGG 57.294 39.130 0.00 0.00 0.00 4.30
4103 8303 6.642540 CCTTTTCCTTTTTCCTTTGATCTTCG 59.357 38.462 0.00 0.00 0.00 3.79
4104 8304 6.425114 GCCTTTTCCTTTTTCCTTTGATCTTC 59.575 38.462 0.00 0.00 0.00 2.87
4105 8305 6.126796 TGCCTTTTCCTTTTTCCTTTGATCTT 60.127 34.615 0.00 0.00 0.00 2.40
4106 8306 5.366477 TGCCTTTTCCTTTTTCCTTTGATCT 59.634 36.000 0.00 0.00 0.00 2.75
4107 8307 5.610398 TGCCTTTTCCTTTTTCCTTTGATC 58.390 37.500 0.00 0.00 0.00 2.92
4108 8308 5.614308 CTGCCTTTTCCTTTTTCCTTTGAT 58.386 37.500 0.00 0.00 0.00 2.57
4109 8309 4.683129 GCTGCCTTTTCCTTTTTCCTTTGA 60.683 41.667 0.00 0.00 0.00 2.69
4110 8310 3.561310 GCTGCCTTTTCCTTTTTCCTTTG 59.439 43.478 0.00 0.00 0.00 2.77
4111 8311 3.433598 GGCTGCCTTTTCCTTTTTCCTTT 60.434 43.478 12.43 0.00 0.00 3.11
4112 8312 2.104792 GGCTGCCTTTTCCTTTTTCCTT 59.895 45.455 12.43 0.00 0.00 3.36
4113 8313 1.694150 GGCTGCCTTTTCCTTTTTCCT 59.306 47.619 12.43 0.00 0.00 3.36
4114 8314 1.270839 GGGCTGCCTTTTCCTTTTTCC 60.271 52.381 19.68 0.00 0.00 3.13
4115 8315 1.694150 AGGGCTGCCTTTTCCTTTTTC 59.306 47.619 19.68 0.00 0.00 2.29
4116 8316 1.806496 AGGGCTGCCTTTTCCTTTTT 58.194 45.000 19.68 0.00 0.00 1.94
4117 8317 2.694616 TAGGGCTGCCTTTTCCTTTT 57.305 45.000 19.68 0.00 0.00 2.27
4118 8318 2.928036 ATAGGGCTGCCTTTTCCTTT 57.072 45.000 19.68 0.00 0.00 3.11
4119 8319 2.928036 AATAGGGCTGCCTTTTCCTT 57.072 45.000 19.68 0.48 0.00 3.36
4120 8320 2.423517 GCTAATAGGGCTGCCTTTTCCT 60.424 50.000 19.68 9.12 0.00 3.36
4121 8321 1.957177 GCTAATAGGGCTGCCTTTTCC 59.043 52.381 19.68 0.61 0.00 3.13
4122 8322 2.937519 AGCTAATAGGGCTGCCTTTTC 58.062 47.619 19.68 1.03 38.73 2.29
4130 8330 1.839994 TGTTCTGCAGCTAATAGGGCT 59.160 47.619 9.47 0.00 41.07 5.19
4131 8331 2.332063 TGTTCTGCAGCTAATAGGGC 57.668 50.000 9.47 0.00 0.00 5.19
4132 8332 3.375299 GTGTTGTTCTGCAGCTAATAGGG 59.625 47.826 9.47 0.00 0.00 3.53
4133 8333 4.256920 AGTGTTGTTCTGCAGCTAATAGG 58.743 43.478 9.47 0.00 0.00 2.57
4134 8334 5.292101 GGTAGTGTTGTTCTGCAGCTAATAG 59.708 44.000 9.47 0.00 0.00 1.73
4135 8335 5.175859 GGTAGTGTTGTTCTGCAGCTAATA 58.824 41.667 9.47 0.00 0.00 0.98
4136 8336 4.003648 GGTAGTGTTGTTCTGCAGCTAAT 58.996 43.478 9.47 0.00 0.00 1.73
4137 8337 3.399330 GGTAGTGTTGTTCTGCAGCTAA 58.601 45.455 9.47 0.65 0.00 3.09
4138 8338 2.289444 GGGTAGTGTTGTTCTGCAGCTA 60.289 50.000 9.47 0.00 0.00 3.32
4139 8339 1.543429 GGGTAGTGTTGTTCTGCAGCT 60.543 52.381 9.47 0.44 0.00 4.24
4140 8340 0.875059 GGGTAGTGTTGTTCTGCAGC 59.125 55.000 9.47 0.00 0.00 5.25
4141 8341 2.550830 AGGGTAGTGTTGTTCTGCAG 57.449 50.000 7.63 7.63 0.00 4.41
4142 8342 3.134985 TGTAAGGGTAGTGTTGTTCTGCA 59.865 43.478 0.00 0.00 0.00 4.41
4143 8343 3.735591 TGTAAGGGTAGTGTTGTTCTGC 58.264 45.455 0.00 0.00 0.00 4.26
4144 8344 5.465724 GTCTTGTAAGGGTAGTGTTGTTCTG 59.534 44.000 0.00 0.00 0.00 3.02
4145 8345 5.608449 GTCTTGTAAGGGTAGTGTTGTTCT 58.392 41.667 0.00 0.00 0.00 3.01
4146 8346 4.446719 CGTCTTGTAAGGGTAGTGTTGTTC 59.553 45.833 0.00 0.00 0.00 3.18
4147 8347 4.374399 CGTCTTGTAAGGGTAGTGTTGTT 58.626 43.478 0.00 0.00 0.00 2.83
4148 8348 3.243975 CCGTCTTGTAAGGGTAGTGTTGT 60.244 47.826 0.00 0.00 0.00 3.32
4149 8349 3.006110 TCCGTCTTGTAAGGGTAGTGTTG 59.994 47.826 0.00 0.00 0.00 3.33
4150 8350 3.233507 TCCGTCTTGTAAGGGTAGTGTT 58.766 45.455 0.00 0.00 0.00 3.32
4151 8351 2.880443 TCCGTCTTGTAAGGGTAGTGT 58.120 47.619 0.00 0.00 0.00 3.55
4152 8352 3.582780 GTTCCGTCTTGTAAGGGTAGTG 58.417 50.000 0.00 0.00 0.00 2.74
4153 8353 2.229784 CGTTCCGTCTTGTAAGGGTAGT 59.770 50.000 0.00 0.00 0.00 2.73
4154 8354 2.229784 ACGTTCCGTCTTGTAAGGGTAG 59.770 50.000 0.00 0.00 33.69 3.18
4155 8355 2.238521 ACGTTCCGTCTTGTAAGGGTA 58.761 47.619 0.00 0.00 33.69 3.69
4156 8356 1.043022 ACGTTCCGTCTTGTAAGGGT 58.957 50.000 0.00 0.00 33.69 4.34
4157 8357 3.900446 ACGTTCCGTCTTGTAAGGG 57.100 52.632 0.00 0.00 33.69 3.95
4169 8369 2.818274 GTGGGCGGATGACGTTCC 60.818 66.667 0.00 0.00 46.52 3.62
4170 8370 2.818274 GGTGGGCGGATGACGTTC 60.818 66.667 0.00 0.00 46.52 3.95
4171 8371 3.632080 TGGTGGGCGGATGACGTT 61.632 61.111 0.00 0.00 46.52 3.99
4172 8372 4.388499 GTGGTGGGCGGATGACGT 62.388 66.667 0.00 0.00 46.52 4.34
4174 8374 2.033448 TTGTGGTGGGCGGATGAC 59.967 61.111 0.00 0.00 0.00 3.06
4175 8375 2.220586 TCTTGTGGTGGGCGGATGA 61.221 57.895 0.00 0.00 0.00 2.92
4176 8376 2.040544 GTCTTGTGGTGGGCGGATG 61.041 63.158 0.00 0.00 0.00 3.51
4177 8377 2.351276 GTCTTGTGGTGGGCGGAT 59.649 61.111 0.00 0.00 0.00 4.18
4178 8378 4.308458 CGTCTTGTGGTGGGCGGA 62.308 66.667 0.00 0.00 0.00 5.54
4179 8379 4.308458 TCGTCTTGTGGTGGGCGG 62.308 66.667 0.00 0.00 0.00 6.13
4180 8380 3.041940 GTCGTCTTGTGGTGGGCG 61.042 66.667 0.00 0.00 0.00 6.13
4181 8381 3.041940 CGTCGTCTTGTGGTGGGC 61.042 66.667 0.00 0.00 0.00 5.36
4182 8382 3.041940 GCGTCGTCTTGTGGTGGG 61.042 66.667 0.00 0.00 0.00 4.61
4183 8383 2.279851 TGCGTCGTCTTGTGGTGG 60.280 61.111 0.00 0.00 0.00 4.61
4184 8384 2.943345 GCTGCGTCGTCTTGTGGTG 61.943 63.158 0.00 0.00 0.00 4.17
4185 8385 2.661866 GCTGCGTCGTCTTGTGGT 60.662 61.111 0.00 0.00 0.00 4.16
4186 8386 2.356313 AGCTGCGTCGTCTTGTGG 60.356 61.111 0.00 0.00 0.00 4.17
4187 8387 1.372251 AGAGCTGCGTCGTCTTGTG 60.372 57.895 0.00 0.00 0.00 3.33
4188 8388 1.372251 CAGAGCTGCGTCGTCTTGT 60.372 57.895 0.00 0.00 0.00 3.16
4189 8389 1.081175 TCAGAGCTGCGTCGTCTTG 60.081 57.895 0.00 0.00 0.00 3.02
4190 8390 1.081108 GTCAGAGCTGCGTCGTCTT 60.081 57.895 0.00 0.00 0.00 3.01
4191 8391 1.796190 TTGTCAGAGCTGCGTCGTCT 61.796 55.000 0.00 0.00 0.00 4.18
4192 8392 1.340657 CTTGTCAGAGCTGCGTCGTC 61.341 60.000 0.00 0.00 0.00 4.20
4193 8393 1.372251 CTTGTCAGAGCTGCGTCGT 60.372 57.895 0.00 0.00 0.00 4.34
4194 8394 1.081175 TCTTGTCAGAGCTGCGTCG 60.081 57.895 0.00 0.00 0.00 5.12
4195 8395 0.319040 TGTCTTGTCAGAGCTGCGTC 60.319 55.000 0.00 0.00 0.00 5.19
4196 8396 0.598680 GTGTCTTGTCAGAGCTGCGT 60.599 55.000 0.00 0.00 0.00 5.24
4197 8397 1.287730 GGTGTCTTGTCAGAGCTGCG 61.288 60.000 0.00 0.00 0.00 5.18
4198 8398 0.250038 TGGTGTCTTGTCAGAGCTGC 60.250 55.000 0.00 0.00 0.00 5.25
4199 8399 2.245159 TTGGTGTCTTGTCAGAGCTG 57.755 50.000 0.00 0.00 0.00 4.24
4200 8400 2.105477 ACATTGGTGTCTTGTCAGAGCT 59.895 45.455 0.00 0.00 31.41 4.09
4201 8401 2.498167 ACATTGGTGTCTTGTCAGAGC 58.502 47.619 0.00 0.00 31.41 4.09
4202 8402 3.879295 ACAACATTGGTGTCTTGTCAGAG 59.121 43.478 0.27 0.00 37.67 3.35
4203 8403 3.884895 ACAACATTGGTGTCTTGTCAGA 58.115 40.909 0.27 0.00 37.67 3.27
4204 8404 4.353737 CAACAACATTGGTGTCTTGTCAG 58.646 43.478 8.00 0.00 40.92 3.51
4205 8405 4.368874 CAACAACATTGGTGTCTTGTCA 57.631 40.909 8.00 0.00 40.92 3.58
4217 8417 9.309516 CGGTATATTGAGTACTACAACAACATT 57.690 33.333 0.00 0.00 0.00 2.71
4218 8418 8.472413 ACGGTATATTGAGTACTACAACAACAT 58.528 33.333 0.00 0.00 0.00 2.71
4219 8419 7.756272 CACGGTATATTGAGTACTACAACAACA 59.244 37.037 0.00 0.00 0.00 3.33
4220 8420 7.253883 GCACGGTATATTGAGTACTACAACAAC 60.254 40.741 0.00 2.51 0.00 3.32
4221 8421 6.753279 GCACGGTATATTGAGTACTACAACAA 59.247 38.462 0.00 0.00 0.00 2.83
4222 8422 6.095860 AGCACGGTATATTGAGTACTACAACA 59.904 38.462 0.00 0.00 0.00 3.33
4223 8423 6.501781 AGCACGGTATATTGAGTACTACAAC 58.498 40.000 0.00 0.00 0.00 3.32
4224 8424 6.704289 AGCACGGTATATTGAGTACTACAA 57.296 37.500 0.00 2.75 0.00 2.41
4251 8451 6.829229 TTCAGCAATCAACTGATGAGATTT 57.171 33.333 0.00 0.00 42.29 2.17
4252 8452 6.127703 CCTTTCAGCAATCAACTGATGAGATT 60.128 38.462 0.00 0.00 42.29 2.40
4255 8455 4.458295 ACCTTTCAGCAATCAACTGATGAG 59.542 41.667 0.00 0.00 42.29 2.90
4269 8469 0.318699 GCGAAAACCCACCTTTCAGC 60.319 55.000 0.00 0.00 33.25 4.26
4307 8507 1.413382 CTCCATACGCGCTGAATCTC 58.587 55.000 5.73 0.00 0.00 2.75
4310 8510 1.951130 CGCTCCATACGCGCTGAAT 60.951 57.895 5.73 0.00 44.33 2.57
4319 8519 2.025727 CGGTCGGTCGCTCCATAC 59.974 66.667 0.00 0.00 35.57 2.39
4373 8577 2.427506 CCTAGTTTCTTCGGCAGCTTT 58.572 47.619 0.00 0.00 0.00 3.51
4379 8583 0.744771 CCCAGCCTAGTTTCTTCGGC 60.745 60.000 0.00 0.00 42.79 5.54
4404 8608 4.445052 CGTCTGCTTCATCATCTCATTCTC 59.555 45.833 0.00 0.00 0.00 2.87
4405 8609 4.370049 CGTCTGCTTCATCATCTCATTCT 58.630 43.478 0.00 0.00 0.00 2.40
4406 8610 3.059733 GCGTCTGCTTCATCATCTCATTC 60.060 47.826 0.00 0.00 38.39 2.67
4407 8611 2.871022 GCGTCTGCTTCATCATCTCATT 59.129 45.455 0.00 0.00 38.39 2.57
4408 8612 2.481854 GCGTCTGCTTCATCATCTCAT 58.518 47.619 0.00 0.00 38.39 2.90
4409 8613 1.800286 CGCGTCTGCTTCATCATCTCA 60.800 52.381 0.00 0.00 39.65 3.27
4410 8614 0.851495 CGCGTCTGCTTCATCATCTC 59.149 55.000 0.00 0.00 39.65 2.75
4430 8634 4.801147 TCTCAATGCAGACGATAAATGC 57.199 40.909 0.00 0.00 40.40 3.56
4431 8635 6.594284 TCTTCTCAATGCAGACGATAAATG 57.406 37.500 0.00 0.00 0.00 2.32
4432 8636 7.615582 TTTCTTCTCAATGCAGACGATAAAT 57.384 32.000 0.00 0.00 0.00 1.40
4433 8637 7.464577 CGATTTCTTCTCAATGCAGACGATAAA 60.465 37.037 0.00 0.00 0.00 1.40
4442 8649 3.411446 ACCACGATTTCTTCTCAATGCA 58.589 40.909 0.00 0.00 0.00 3.96
4443 8650 3.484229 CGACCACGATTTCTTCTCAATGC 60.484 47.826 0.00 0.00 42.66 3.56
4487 8698 1.526041 CGCTTGCTGCAGCTATTCTAG 59.474 52.381 36.61 23.02 43.06 2.43
4488 8699 1.136891 TCGCTTGCTGCAGCTATTCTA 59.863 47.619 36.61 15.23 43.06 2.10
4489 8700 0.107993 TCGCTTGCTGCAGCTATTCT 60.108 50.000 36.61 0.00 43.06 2.40
4492 8703 1.712977 GCTTCGCTTGCTGCAGCTAT 61.713 55.000 36.61 0.00 43.06 2.97
4555 8770 2.665185 AGTTCGAACCGGCAGTGC 60.665 61.111 24.22 6.55 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.