Multiple sequence alignment - TraesCS1A01G348700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G348700 | chr1A | 100.000 | 4317 | 0 | 0 | 978 | 5294 | 534046916 | 534042600 | 0.000000e+00 | 7973 |
1 | TraesCS1A01G348700 | chr1A | 100.000 | 685 | 0 | 0 | 1 | 685 | 534047893 | 534047209 | 0.000000e+00 | 1266 |
2 | TraesCS1A01G348700 | chr1A | 85.126 | 995 | 71 | 42 | 4342 | 5294 | 534028545 | 534027586 | 0.000000e+00 | 946 |
3 | TraesCS1A01G348700 | chr1A | 86.091 | 683 | 78 | 11 | 1048 | 1717 | 389836195 | 389836873 | 0.000000e+00 | 719 |
4 | TraesCS1A01G348700 | chr1A | 79.787 | 564 | 78 | 22 | 4341 | 4869 | 534025991 | 534025429 | 1.390000e-100 | 377 |
5 | TraesCS1A01G348700 | chr1A | 96.552 | 116 | 4 | 0 | 2391 | 2506 | 403636553 | 403636438 | 5.410000e-45 | 193 |
6 | TraesCS1A01G348700 | chr1A | 95.122 | 123 | 3 | 3 | 2384 | 2506 | 493212936 | 493213055 | 1.950000e-44 | 191 |
7 | TraesCS1A01G348700 | chr1A | 91.304 | 92 | 3 | 4 | 4025 | 4115 | 534026193 | 534026106 | 2.590000e-23 | 121 |
8 | TraesCS1A01G348700 | chr1D | 93.408 | 2412 | 99 | 24 | 2501 | 4871 | 436985509 | 436983117 | 0.000000e+00 | 3518 |
9 | TraesCS1A01G348700 | chr1D | 95.160 | 909 | 35 | 6 | 1495 | 2397 | 436986413 | 436985508 | 0.000000e+00 | 1426 |
10 | TraesCS1A01G348700 | chr1D | 93.301 | 627 | 37 | 3 | 978 | 1603 | 436987055 | 436986433 | 0.000000e+00 | 920 |
11 | TraesCS1A01G348700 | chr1D | 86.969 | 683 | 69 | 13 | 1048 | 1717 | 59199537 | 59198862 | 0.000000e+00 | 750 |
12 | TraesCS1A01G348700 | chr1D | 88.146 | 329 | 15 | 10 | 313 | 632 | 436987430 | 436987117 | 2.330000e-98 | 370 |
13 | TraesCS1A01G348700 | chr1D | 78.261 | 299 | 23 | 17 | 4879 | 5135 | 436983081 | 436982783 | 2.550000e-33 | 154 |
14 | TraesCS1A01G348700 | chr1D | 80.319 | 188 | 25 | 9 | 4025 | 4207 | 436981810 | 436981630 | 1.200000e-26 | 132 |
15 | TraesCS1A01G348700 | chr1B | 88.559 | 2657 | 174 | 58 | 2729 | 5294 | 592054382 | 592051765 | 0.000000e+00 | 3103 |
16 | TraesCS1A01G348700 | chr1B | 91.249 | 2194 | 122 | 26 | 2729 | 4872 | 592168594 | 592166421 | 0.000000e+00 | 2924 |
17 | TraesCS1A01G348700 | chr1B | 90.656 | 2194 | 134 | 31 | 2729 | 4872 | 592100092 | 592097920 | 0.000000e+00 | 2850 |
18 | TraesCS1A01G348700 | chr1B | 90.652 | 2193 | 134 | 31 | 2729 | 4871 | 592129914 | 592127743 | 0.000000e+00 | 2848 |
19 | TraesCS1A01G348700 | chr1B | 91.102 | 753 | 45 | 9 | 1495 | 2243 | 592169718 | 592168984 | 0.000000e+00 | 1000 |
20 | TraesCS1A01G348700 | chr1B | 92.663 | 627 | 40 | 4 | 978 | 1603 | 592170359 | 592169738 | 0.000000e+00 | 898 |
21 | TraesCS1A01G348700 | chr1B | 86.912 | 680 | 71 | 14 | 1051 | 1717 | 10917828 | 10917154 | 0.000000e+00 | 747 |
22 | TraesCS1A01G348700 | chr1B | 82.513 | 772 | 105 | 20 | 4029 | 4794 | 592040411 | 592039664 | 0.000000e+00 | 651 |
23 | TraesCS1A01G348700 | chr1B | 83.203 | 637 | 47 | 25 | 33 | 632 | 592171034 | 592170421 | 3.630000e-146 | 529 |
24 | TraesCS1A01G348700 | chr1B | 80.462 | 476 | 45 | 29 | 4029 | 4499 | 592164669 | 592164237 | 2.380000e-83 | 320 |
25 | TraesCS1A01G348700 | chr1B | 83.425 | 362 | 37 | 7 | 4341 | 4701 | 592048014 | 592047675 | 1.110000e-81 | 315 |
26 | TraesCS1A01G348700 | chr1B | 88.596 | 114 | 12 | 1 | 3882 | 3995 | 592050535 | 592050423 | 2.570000e-28 | 137 |
27 | TraesCS1A01G348700 | chr1B | 86.607 | 112 | 11 | 2 | 3887 | 3995 | 592164779 | 592164669 | 2.590000e-23 | 121 |
28 | TraesCS1A01G348700 | chr2D | 91.124 | 1183 | 84 | 15 | 1211 | 2386 | 253820022 | 253818854 | 0.000000e+00 | 1583 |
29 | TraesCS1A01G348700 | chr2A | 90.609 | 1182 | 95 | 10 | 1211 | 2386 | 78749431 | 78750602 | 0.000000e+00 | 1554 |
30 | TraesCS1A01G348700 | chr6B | 90.440 | 1182 | 97 | 10 | 1211 | 2386 | 706049436 | 706048265 | 0.000000e+00 | 1543 |
31 | TraesCS1A01G348700 | chr5B | 90.042 | 1185 | 91 | 14 | 1211 | 2386 | 261351100 | 261352266 | 0.000000e+00 | 1509 |
32 | TraesCS1A01G348700 | chr4B | 88.081 | 1183 | 90 | 11 | 1211 | 2386 | 403439509 | 403440647 | 0.000000e+00 | 1356 |
33 | TraesCS1A01G348700 | chr4B | 89.450 | 891 | 62 | 7 | 1502 | 2386 | 361073164 | 361072300 | 0.000000e+00 | 1096 |
34 | TraesCS1A01G348700 | chr3B | 91.848 | 736 | 54 | 5 | 1654 | 2386 | 639278281 | 639277549 | 0.000000e+00 | 1022 |
35 | TraesCS1A01G348700 | chr7A | 86.111 | 684 | 76 | 14 | 1048 | 1717 | 538291017 | 538291695 | 0.000000e+00 | 719 |
36 | TraesCS1A01G348700 | chr7A | 98.246 | 114 | 2 | 0 | 2395 | 2508 | 513215693 | 513215580 | 3.230000e-47 | 200 |
37 | TraesCS1A01G348700 | chr7A | 98.182 | 110 | 2 | 0 | 2396 | 2505 | 9642379 | 9642488 | 5.410000e-45 | 193 |
38 | TraesCS1A01G348700 | chr7A | 95.082 | 122 | 5 | 1 | 2386 | 2506 | 398370377 | 398370498 | 1.950000e-44 | 191 |
39 | TraesCS1A01G348700 | chr6A | 95.082 | 122 | 4 | 2 | 2381 | 2502 | 505440525 | 505440406 | 1.950000e-44 | 191 |
40 | TraesCS1A01G348700 | chr5D | 95.082 | 122 | 5 | 1 | 2386 | 2506 | 193234616 | 193234737 | 1.950000e-44 | 191 |
41 | TraesCS1A01G348700 | chrUn | 93.600 | 125 | 8 | 0 | 2385 | 2509 | 260324617 | 260324741 | 2.520000e-43 | 187 |
42 | TraesCS1A01G348700 | chr4A | 96.364 | 110 | 4 | 0 | 2396 | 2505 | 181949516 | 181949407 | 1.170000e-41 | 182 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G348700 | chr1A | 534042600 | 534047893 | 5293 | True | 4619.500000 | 7973 | 100.000000 | 1 | 5294 | 2 | chr1A.!!$R3 | 5293 |
1 | TraesCS1A01G348700 | chr1A | 389836195 | 389836873 | 678 | False | 719.000000 | 719 | 86.091000 | 1048 | 1717 | 1 | chr1A.!!$F1 | 669 |
2 | TraesCS1A01G348700 | chr1A | 534025429 | 534028545 | 3116 | True | 481.333333 | 946 | 85.405667 | 4025 | 5294 | 3 | chr1A.!!$R2 | 1269 |
3 | TraesCS1A01G348700 | chr1D | 436981630 | 436987430 | 5800 | True | 1086.666667 | 3518 | 88.099167 | 313 | 5135 | 6 | chr1D.!!$R2 | 4822 |
4 | TraesCS1A01G348700 | chr1D | 59198862 | 59199537 | 675 | True | 750.000000 | 750 | 86.969000 | 1048 | 1717 | 1 | chr1D.!!$R1 | 669 |
5 | TraesCS1A01G348700 | chr1B | 592097920 | 592100092 | 2172 | True | 2850.000000 | 2850 | 90.656000 | 2729 | 4872 | 1 | chr1B.!!$R3 | 2143 |
6 | TraesCS1A01G348700 | chr1B | 592127743 | 592129914 | 2171 | True | 2848.000000 | 2848 | 90.652000 | 2729 | 4871 | 1 | chr1B.!!$R4 | 2142 |
7 | TraesCS1A01G348700 | chr1B | 592047675 | 592054382 | 6707 | True | 1185.000000 | 3103 | 86.860000 | 2729 | 5294 | 3 | chr1B.!!$R5 | 2565 |
8 | TraesCS1A01G348700 | chr1B | 592164237 | 592171034 | 6797 | True | 965.333333 | 2924 | 87.547667 | 33 | 4872 | 6 | chr1B.!!$R6 | 4839 |
9 | TraesCS1A01G348700 | chr1B | 10917154 | 10917828 | 674 | True | 747.000000 | 747 | 86.912000 | 1051 | 1717 | 1 | chr1B.!!$R1 | 666 |
10 | TraesCS1A01G348700 | chr1B | 592039664 | 592040411 | 747 | True | 651.000000 | 651 | 82.513000 | 4029 | 4794 | 1 | chr1B.!!$R2 | 765 |
11 | TraesCS1A01G348700 | chr2D | 253818854 | 253820022 | 1168 | True | 1583.000000 | 1583 | 91.124000 | 1211 | 2386 | 1 | chr2D.!!$R1 | 1175 |
12 | TraesCS1A01G348700 | chr2A | 78749431 | 78750602 | 1171 | False | 1554.000000 | 1554 | 90.609000 | 1211 | 2386 | 1 | chr2A.!!$F1 | 1175 |
13 | TraesCS1A01G348700 | chr6B | 706048265 | 706049436 | 1171 | True | 1543.000000 | 1543 | 90.440000 | 1211 | 2386 | 1 | chr6B.!!$R1 | 1175 |
14 | TraesCS1A01G348700 | chr5B | 261351100 | 261352266 | 1166 | False | 1509.000000 | 1509 | 90.042000 | 1211 | 2386 | 1 | chr5B.!!$F1 | 1175 |
15 | TraesCS1A01G348700 | chr4B | 403439509 | 403440647 | 1138 | False | 1356.000000 | 1356 | 88.081000 | 1211 | 2386 | 1 | chr4B.!!$F1 | 1175 |
16 | TraesCS1A01G348700 | chr4B | 361072300 | 361073164 | 864 | True | 1096.000000 | 1096 | 89.450000 | 1502 | 2386 | 1 | chr4B.!!$R1 | 884 |
17 | TraesCS1A01G348700 | chr3B | 639277549 | 639278281 | 732 | True | 1022.000000 | 1022 | 91.848000 | 1654 | 2386 | 1 | chr3B.!!$R1 | 732 |
18 | TraesCS1A01G348700 | chr7A | 538291017 | 538291695 | 678 | False | 719.000000 | 719 | 86.111000 | 1048 | 1717 | 1 | chr7A.!!$F3 | 669 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
55 | 56 | 0.252881 | TCTCCTCATGGCTTGGGAGT | 60.253 | 55.000 | 24.12 | 0.00 | 40.72 | 3.85 | F |
1338 | 1390 | 0.375106 | GCGGCTCACAGCTTATTGTC | 59.625 | 55.000 | 0.00 | 0.00 | 41.99 | 3.18 | F |
2412 | 2797 | 0.329261 | TCTACTCCCTCCGTTCGGAA | 59.671 | 55.000 | 14.79 | 0.04 | 33.41 | 4.30 | F |
2505 | 2890 | 0.893447 | CCGAACGGAGGGAGTAGTTT | 59.107 | 55.000 | 7.53 | 0.00 | 37.50 | 2.66 | F |
3661 | 4076 | 1.004394 | TCTCGCTCCAGGTCTTCACTA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1414 | 1466 | 0.544357 | TCACCAAGGGTCGACATCCT | 60.544 | 55.000 | 18.91 | 12.76 | 31.02 | 3.24 | R |
2484 | 2869 | 0.038744 | ACTACTCCCTCCGTTCGGAA | 59.961 | 55.000 | 14.79 | 0.04 | 33.41 | 4.30 | R |
3633 | 4038 | 0.820226 | CCTGGAGCGAGACTGATGAA | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 | R |
3741 | 4168 | 1.760613 | GGGTTCATACCGATCACAGGA | 59.239 | 52.381 | 0.00 | 0.00 | 46.04 | 3.86 | R |
4922 | 5375 | 0.382636 | GAGAACCACGCACGAAAACG | 60.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 6.780706 | TGAACTTCTTCAAACTTATCGGTC | 57.219 | 37.500 | 0.00 | 0.00 | 33.20 | 4.79 |
25 | 26 | 6.285224 | TGAACTTCTTCAAACTTATCGGTCA | 58.715 | 36.000 | 0.00 | 0.00 | 33.20 | 4.02 |
26 | 27 | 6.764085 | TGAACTTCTTCAAACTTATCGGTCAA | 59.236 | 34.615 | 0.00 | 0.00 | 33.20 | 3.18 |
27 | 28 | 6.541111 | ACTTCTTCAAACTTATCGGTCAAC | 57.459 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
28 | 29 | 6.053005 | ACTTCTTCAAACTTATCGGTCAACA | 58.947 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
29 | 30 | 5.917541 | TCTTCAAACTTATCGGTCAACAC | 57.082 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
30 | 31 | 5.361427 | TCTTCAAACTTATCGGTCAACACA | 58.639 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
31 | 32 | 5.995282 | TCTTCAAACTTATCGGTCAACACAT | 59.005 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
55 | 56 | 0.252881 | TCTCCTCATGGCTTGGGAGT | 60.253 | 55.000 | 24.12 | 0.00 | 40.72 | 3.85 |
56 | 57 | 1.008327 | TCTCCTCATGGCTTGGGAGTA | 59.992 | 52.381 | 24.12 | 15.08 | 40.72 | 2.59 |
74 | 75 | 4.760530 | AGTAGCCACTCATGCTCATTAA | 57.239 | 40.909 | 0.00 | 0.00 | 40.23 | 1.40 |
78 | 79 | 4.789807 | AGCCACTCATGCTCATTAAATCT | 58.210 | 39.130 | 0.00 | 0.00 | 32.41 | 2.40 |
113 | 115 | 2.182825 | CGTTCGGACGTGATAAAGAGG | 58.817 | 52.381 | 8.45 | 0.00 | 44.08 | 3.69 |
122 | 124 | 5.395324 | GGACGTGATAAAGAGGATGAAAGGA | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
151 | 153 | 3.038788 | TGCACAGCTAGAAAATCGTCA | 57.961 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
153 | 155 | 3.186409 | TGCACAGCTAGAAAATCGTCAAC | 59.814 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
156 | 158 | 2.678336 | CAGCTAGAAAATCGTCAACCCC | 59.322 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
157 | 159 | 2.304761 | AGCTAGAAAATCGTCAACCCCA | 59.695 | 45.455 | 0.00 | 0.00 | 0.00 | 4.96 |
163 | 165 | 1.848886 | AATCGTCAACCCCACCTCCC | 61.849 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
164 | 166 | 3.246112 | CGTCAACCCCACCTCCCA | 61.246 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
166 | 168 | 3.246112 | TCAACCCCACCTCCCACG | 61.246 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
170 | 172 | 4.278513 | CCCCACCTCCCACGCAAA | 62.279 | 66.667 | 0.00 | 0.00 | 0.00 | 3.68 |
179 | 181 | 3.054361 | ACCTCCCACGCAAATATTCTTCT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
180 | 182 | 3.947834 | CCTCCCACGCAAATATTCTTCTT | 59.052 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
227 | 229 | 5.763444 | ACAAATTAGTGAACATCGTCGAG | 57.237 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
250 | 252 | 2.328099 | CCTTGCTTGCACTCGTCCC | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
272 | 274 | 5.658190 | CCCCTCCAAATATGTCAACATTTCT | 59.342 | 40.000 | 0.20 | 0.00 | 37.76 | 2.52 |
306 | 308 | 6.909550 | ATTGTAGTAAGAACATTTTGGGCA | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
307 | 309 | 6.716934 | TTGTAGTAAGAACATTTTGGGCAA | 57.283 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
311 | 313 | 7.708752 | TGTAGTAAGAACATTTTGGGCAAAAAG | 59.291 | 33.333 | 5.92 | 1.20 | 42.71 | 2.27 |
316 | 318 | 7.459795 | AGAACATTTTGGGCAAAAAGAAAAA | 57.540 | 28.000 | 5.92 | 0.00 | 42.71 | 1.94 |
326 | 328 | 6.540551 | TGGGCAAAAAGAAAAAGGAATTGTAC | 59.459 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
341 | 343 | 7.182060 | AGGAATTGTACCAAGGACAAATGTAT | 58.818 | 34.615 | 0.00 | 0.00 | 40.07 | 2.29 |
390 | 418 | 4.523083 | CCCCCGAAGATAAGAACAAATCA | 58.477 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
414 | 450 | 9.154632 | TCAATAAGAAGGTTCTATACTATGCCA | 57.845 | 33.333 | 0.00 | 0.00 | 36.28 | 4.92 |
417 | 453 | 7.439108 | AAGAAGGTTCTATACTATGCCACTT | 57.561 | 36.000 | 0.00 | 0.00 | 36.28 | 3.16 |
418 | 454 | 7.439108 | AGAAGGTTCTATACTATGCCACTTT | 57.561 | 36.000 | 0.00 | 0.00 | 35.34 | 2.66 |
419 | 455 | 7.862675 | AGAAGGTTCTATACTATGCCACTTTT | 58.137 | 34.615 | 0.00 | 0.00 | 35.34 | 2.27 |
420 | 456 | 8.329502 | AGAAGGTTCTATACTATGCCACTTTTT | 58.670 | 33.333 | 0.00 | 0.00 | 35.34 | 1.94 |
454 | 490 | 0.842030 | AACTGCCACCTCATCTCCCA | 60.842 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
598 | 635 | 5.050702 | AGACGCGAAAAAGAAGAAGAAGAAG | 60.051 | 40.000 | 15.93 | 0.00 | 0.00 | 2.85 |
599 | 636 | 4.809426 | ACGCGAAAAAGAAGAAGAAGAAGA | 59.191 | 37.500 | 15.93 | 0.00 | 0.00 | 2.87 |
600 | 637 | 5.293569 | ACGCGAAAAAGAAGAAGAAGAAGAA | 59.706 | 36.000 | 15.93 | 0.00 | 0.00 | 2.52 |
601 | 638 | 6.183360 | ACGCGAAAAAGAAGAAGAAGAAGAAA | 60.183 | 34.615 | 15.93 | 0.00 | 0.00 | 2.52 |
602 | 639 | 6.355666 | CGCGAAAAAGAAGAAGAAGAAGAAAG | 59.644 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
603 | 640 | 7.410485 | GCGAAAAAGAAGAAGAAGAAGAAAGA | 58.590 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
632 | 669 | 2.284151 | GTCTCCTCTCCCCTCCCC | 59.716 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
633 | 670 | 2.133201 | TCTCCTCTCCCCTCCCCT | 59.867 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
634 | 671 | 2.015726 | TCTCCTCTCCCCTCCCCTC | 61.016 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
635 | 672 | 3.036959 | TCCTCTCCCCTCCCCTCC | 61.037 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
636 | 673 | 4.179599 | CCTCTCCCCTCCCCTCCC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
637 | 674 | 4.179599 | CTCTCCCCTCCCCTCCCC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.81 |
638 | 675 | 4.761304 | TCTCCCCTCCCCTCCCCT | 62.761 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
639 | 676 | 4.179599 | CTCCCCTCCCCTCCCCTC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
643 | 680 | 4.179599 | CCTCCCCTCCCCTCCCTC | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 4.30 |
644 | 681 | 4.548513 | CTCCCCTCCCCTCCCTCG | 62.549 | 77.778 | 0.00 | 0.00 | 0.00 | 4.63 |
649 | 686 | 4.787280 | CTCCCCTCCCTCGTGCCT | 62.787 | 72.222 | 0.00 | 0.00 | 0.00 | 4.75 |
650 | 687 | 4.332543 | TCCCCTCCCTCGTGCCTT | 62.333 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
651 | 688 | 4.101448 | CCCCTCCCTCGTGCCTTG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 3.61 |
652 | 689 | 4.101448 | CCCTCCCTCGTGCCTTGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 3.61 |
653 | 690 | 4.785453 | CCTCCCTCGTGCCTTGGC | 62.785 | 72.222 | 4.43 | 4.43 | 0.00 | 4.52 |
654 | 691 | 4.785453 | CTCCCTCGTGCCTTGGCC | 62.785 | 72.222 | 9.35 | 0.00 | 0.00 | 5.36 |
1289 | 1339 | 1.304381 | TGGCCTGGCTGTTGGAATC | 60.304 | 57.895 | 19.68 | 0.00 | 0.00 | 2.52 |
1316 | 1368 | 2.028385 | ACGGTCTGTGTTGGTATTCCTC | 60.028 | 50.000 | 0.00 | 0.00 | 34.23 | 3.71 |
1321 | 1373 | 1.338674 | TGTGTTGGTATTCCTCTGGCG | 60.339 | 52.381 | 0.00 | 0.00 | 34.23 | 5.69 |
1338 | 1390 | 0.375106 | GCGGCTCACAGCTTATTGTC | 59.625 | 55.000 | 0.00 | 0.00 | 41.99 | 3.18 |
1339 | 1391 | 0.647410 | CGGCTCACAGCTTATTGTCG | 59.353 | 55.000 | 0.00 | 0.00 | 41.99 | 4.35 |
1340 | 1392 | 1.726853 | GGCTCACAGCTTATTGTCGT | 58.273 | 50.000 | 0.00 | 0.00 | 41.99 | 4.34 |
1360 | 1412 | 1.198867 | TCGGATTTGTTGATTGTGCGG | 59.801 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
1414 | 1466 | 2.670229 | CGCTGCAAGTTCGTAGGACTAA | 60.670 | 50.000 | 0.00 | 0.00 | 35.30 | 2.24 |
1450 | 1502 | 2.163412 | GGTGAGTGTTTGTTGTGCTGAA | 59.837 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1465 | 1517 | 5.118990 | TGTGCTGAAGCTAACTATTGGATC | 58.881 | 41.667 | 3.61 | 0.00 | 42.66 | 3.36 |
1829 | 2150 | 4.527816 | ACAATGTATGCCCTTCATGTTTGT | 59.472 | 37.500 | 0.00 | 0.00 | 36.63 | 2.83 |
1954 | 2278 | 4.381292 | GCCTCAAAGAAATTCATGACTGGG | 60.381 | 45.833 | 0.00 | 0.00 | 0.00 | 4.45 |
1978 | 2303 | 9.091220 | GGGTGGTAAGTCATTCTACTAAGATAT | 57.909 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
2051 | 2377 | 3.248266 | GCCAGCATTCAATTTCAGTGAC | 58.752 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2054 | 2380 | 5.634896 | CCAGCATTCAATTTCAGTGACTAC | 58.365 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2060 | 2386 | 6.721571 | TTCAATTTCAGTGACTACCGATTC | 57.278 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
2061 | 2387 | 5.789521 | TCAATTTCAGTGACTACCGATTCA | 58.210 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2141 | 2467 | 4.440802 | GGACAGTGTCTCAGTGTGATATCC | 60.441 | 50.000 | 22.18 | 5.97 | 46.41 | 2.59 |
2263 | 2643 | 4.671831 | TCAACAAATAGAATGGGAGGCAA | 58.328 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
2331 | 2713 | 3.945285 | CGTAAGCCACAATTAACAGGGAT | 59.055 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2397 | 2782 | 4.599047 | ATGCTCCTCTGCTGTTATCTAC | 57.401 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2398 | 2783 | 3.636679 | TGCTCCTCTGCTGTTATCTACT | 58.363 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
2399 | 2784 | 3.634448 | TGCTCCTCTGCTGTTATCTACTC | 59.366 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2400 | 2785 | 3.005367 | GCTCCTCTGCTGTTATCTACTCC | 59.995 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
2401 | 2786 | 3.567397 | TCCTCTGCTGTTATCTACTCCC | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2402 | 2787 | 3.205507 | TCCTCTGCTGTTATCTACTCCCT | 59.794 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2403 | 2788 | 3.572255 | CCTCTGCTGTTATCTACTCCCTC | 59.428 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2404 | 2789 | 3.567397 | TCTGCTGTTATCTACTCCCTCC | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2405 | 2790 | 2.294791 | CTGCTGTTATCTACTCCCTCCG | 59.705 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
2406 | 2791 | 2.308690 | GCTGTTATCTACTCCCTCCGT | 58.691 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
2407 | 2792 | 2.694109 | GCTGTTATCTACTCCCTCCGTT | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2408 | 2793 | 3.243468 | GCTGTTATCTACTCCCTCCGTTC | 60.243 | 52.174 | 0.00 | 0.00 | 0.00 | 3.95 |
2409 | 2794 | 2.947652 | TGTTATCTACTCCCTCCGTTCG | 59.052 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2410 | 2795 | 2.267174 | TATCTACTCCCTCCGTTCGG | 57.733 | 55.000 | 4.74 | 4.74 | 0.00 | 4.30 |
2411 | 2796 | 0.549950 | ATCTACTCCCTCCGTTCGGA | 59.450 | 55.000 | 13.34 | 13.34 | 0.00 | 4.55 |
2412 | 2797 | 0.329261 | TCTACTCCCTCCGTTCGGAA | 59.671 | 55.000 | 14.79 | 0.04 | 33.41 | 4.30 |
2413 | 2798 | 1.064166 | TCTACTCCCTCCGTTCGGAAT | 60.064 | 52.381 | 14.79 | 2.09 | 33.41 | 3.01 |
2414 | 2799 | 1.755380 | CTACTCCCTCCGTTCGGAATT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.17 |
2415 | 2800 | 1.856629 | ACTCCCTCCGTTCGGAATTA | 58.143 | 50.000 | 14.79 | 2.82 | 33.41 | 1.40 |
2416 | 2801 | 1.479730 | ACTCCCTCCGTTCGGAATTAC | 59.520 | 52.381 | 14.79 | 0.00 | 33.41 | 1.89 |
2417 | 2802 | 1.755380 | CTCCCTCCGTTCGGAATTACT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.24 |
2418 | 2803 | 2.167900 | CTCCCTCCGTTCGGAATTACTT | 59.832 | 50.000 | 14.79 | 0.00 | 33.41 | 2.24 |
2419 | 2804 | 2.093869 | TCCCTCCGTTCGGAATTACTTG | 60.094 | 50.000 | 14.79 | 1.97 | 33.41 | 3.16 |
2420 | 2805 | 2.354403 | CCCTCCGTTCGGAATTACTTGT | 60.354 | 50.000 | 14.79 | 0.00 | 33.41 | 3.16 |
2421 | 2806 | 2.928116 | CCTCCGTTCGGAATTACTTGTC | 59.072 | 50.000 | 14.79 | 0.00 | 33.41 | 3.18 |
2422 | 2807 | 2.597305 | CTCCGTTCGGAATTACTTGTCG | 59.403 | 50.000 | 14.79 | 0.00 | 33.41 | 4.35 |
2423 | 2808 | 1.060122 | CCGTTCGGAATTACTTGTCGC | 59.940 | 52.381 | 5.19 | 0.00 | 0.00 | 5.19 |
2424 | 2809 | 1.722464 | CGTTCGGAATTACTTGTCGCA | 59.278 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
2425 | 2810 | 2.222508 | CGTTCGGAATTACTTGTCGCAG | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2426 | 2811 | 2.991190 | GTTCGGAATTACTTGTCGCAGA | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
2427 | 2812 | 3.306917 | TCGGAATTACTTGTCGCAGAA | 57.693 | 42.857 | 0.00 | 0.00 | 39.69 | 3.02 |
2428 | 2813 | 3.655486 | TCGGAATTACTTGTCGCAGAAA | 58.345 | 40.909 | 0.00 | 0.00 | 39.69 | 2.52 |
2429 | 2814 | 4.250464 | TCGGAATTACTTGTCGCAGAAAT | 58.750 | 39.130 | 0.00 | 0.00 | 39.69 | 2.17 |
2430 | 2815 | 4.092821 | TCGGAATTACTTGTCGCAGAAATG | 59.907 | 41.667 | 0.00 | 0.00 | 39.69 | 2.32 |
2431 | 2816 | 4.662145 | GGAATTACTTGTCGCAGAAATGG | 58.338 | 43.478 | 0.00 | 0.00 | 39.69 | 3.16 |
2432 | 2817 | 4.394920 | GGAATTACTTGTCGCAGAAATGGA | 59.605 | 41.667 | 0.00 | 0.00 | 39.69 | 3.41 |
2433 | 2818 | 5.066505 | GGAATTACTTGTCGCAGAAATGGAT | 59.933 | 40.000 | 0.00 | 0.00 | 39.69 | 3.41 |
2434 | 2819 | 4.944962 | TTACTTGTCGCAGAAATGGATG | 57.055 | 40.909 | 0.00 | 0.00 | 39.69 | 3.51 |
2435 | 2820 | 2.783135 | ACTTGTCGCAGAAATGGATGT | 58.217 | 42.857 | 0.00 | 0.00 | 39.69 | 3.06 |
2436 | 2821 | 3.937814 | ACTTGTCGCAGAAATGGATGTA | 58.062 | 40.909 | 0.00 | 0.00 | 39.69 | 2.29 |
2437 | 2822 | 4.517285 | ACTTGTCGCAGAAATGGATGTAT | 58.483 | 39.130 | 0.00 | 0.00 | 39.69 | 2.29 |
2438 | 2823 | 4.572389 | ACTTGTCGCAGAAATGGATGTATC | 59.428 | 41.667 | 0.00 | 0.00 | 39.69 | 2.24 |
2439 | 2824 | 4.406648 | TGTCGCAGAAATGGATGTATCT | 57.593 | 40.909 | 0.00 | 0.00 | 39.69 | 1.98 |
2440 | 2825 | 5.529581 | TGTCGCAGAAATGGATGTATCTA | 57.470 | 39.130 | 0.00 | 0.00 | 39.69 | 1.98 |
2441 | 2826 | 6.101650 | TGTCGCAGAAATGGATGTATCTAT | 57.898 | 37.500 | 0.00 | 0.00 | 39.69 | 1.98 |
2442 | 2827 | 7.227049 | TGTCGCAGAAATGGATGTATCTATA | 57.773 | 36.000 | 0.00 | 0.00 | 39.69 | 1.31 |
2443 | 2828 | 7.840931 | TGTCGCAGAAATGGATGTATCTATAT | 58.159 | 34.615 | 0.00 | 0.00 | 39.69 | 0.86 |
2444 | 2829 | 7.761249 | TGTCGCAGAAATGGATGTATCTATATG | 59.239 | 37.037 | 0.00 | 0.00 | 39.69 | 1.78 |
2445 | 2830 | 7.761704 | GTCGCAGAAATGGATGTATCTATATGT | 59.238 | 37.037 | 0.00 | 0.00 | 39.69 | 2.29 |
2446 | 2831 | 8.966868 | TCGCAGAAATGGATGTATCTATATGTA | 58.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2447 | 2832 | 9.755804 | CGCAGAAATGGATGTATCTATATGTAT | 57.244 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2474 | 2859 | 9.749340 | TTTAGTTCTAGATACATCCATATCCGA | 57.251 | 33.333 | 0.00 | 0.00 | 32.76 | 4.55 |
2475 | 2860 | 7.873719 | AGTTCTAGATACATCCATATCCGAG | 57.126 | 40.000 | 0.00 | 0.00 | 32.76 | 4.63 |
2476 | 2861 | 7.634718 | AGTTCTAGATACATCCATATCCGAGA | 58.365 | 38.462 | 0.00 | 0.00 | 32.76 | 4.04 |
2477 | 2862 | 7.554835 | AGTTCTAGATACATCCATATCCGAGAC | 59.445 | 40.741 | 0.00 | 0.00 | 32.76 | 3.36 |
2478 | 2863 | 6.958767 | TCTAGATACATCCATATCCGAGACA | 58.041 | 40.000 | 0.00 | 0.00 | 32.76 | 3.41 |
2479 | 2864 | 7.402862 | TCTAGATACATCCATATCCGAGACAA | 58.597 | 38.462 | 0.00 | 0.00 | 32.76 | 3.18 |
2480 | 2865 | 6.522625 | AGATACATCCATATCCGAGACAAG | 57.477 | 41.667 | 0.00 | 0.00 | 32.76 | 3.16 |
2481 | 2866 | 6.013379 | AGATACATCCATATCCGAGACAAGT | 58.987 | 40.000 | 0.00 | 0.00 | 32.76 | 3.16 |
2482 | 2867 | 7.175797 | AGATACATCCATATCCGAGACAAGTA | 58.824 | 38.462 | 0.00 | 0.00 | 32.76 | 2.24 |
2483 | 2868 | 7.670140 | AGATACATCCATATCCGAGACAAGTAA | 59.330 | 37.037 | 0.00 | 0.00 | 32.76 | 2.24 |
2484 | 2869 | 6.672266 | ACATCCATATCCGAGACAAGTAAT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2485 | 2870 | 7.067496 | ACATCCATATCCGAGACAAGTAATT | 57.933 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2486 | 2871 | 7.155328 | ACATCCATATCCGAGACAAGTAATTC | 58.845 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
2487 | 2872 | 6.097915 | TCCATATCCGAGACAAGTAATTCC | 57.902 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2488 | 2873 | 4.923871 | CCATATCCGAGACAAGTAATTCCG | 59.076 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2489 | 2874 | 5.278808 | CCATATCCGAGACAAGTAATTCCGA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2490 | 2875 | 4.730949 | ATCCGAGACAAGTAATTCCGAA | 57.269 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
2491 | 2876 | 3.841643 | TCCGAGACAAGTAATTCCGAAC | 58.158 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
2492 | 2877 | 2.597305 | CCGAGACAAGTAATTCCGAACG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2493 | 2878 | 2.597305 | CGAGACAAGTAATTCCGAACGG | 59.403 | 50.000 | 6.94 | 6.94 | 0.00 | 4.44 |
2494 | 2879 | 3.671433 | CGAGACAAGTAATTCCGAACGGA | 60.671 | 47.826 | 12.04 | 12.04 | 43.52 | 4.69 |
2495 | 2880 | 3.846360 | AGACAAGTAATTCCGAACGGAG | 58.154 | 45.455 | 15.34 | 5.60 | 46.06 | 4.63 |
2496 | 2881 | 2.928116 | GACAAGTAATTCCGAACGGAGG | 59.072 | 50.000 | 15.34 | 4.52 | 46.06 | 4.30 |
2497 | 2882 | 2.277084 | CAAGTAATTCCGAACGGAGGG | 58.723 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
2498 | 2883 | 1.856629 | AGTAATTCCGAACGGAGGGA | 58.143 | 50.000 | 15.34 | 2.49 | 46.06 | 4.20 |
2499 | 2884 | 1.755380 | AGTAATTCCGAACGGAGGGAG | 59.245 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
2500 | 2885 | 1.479730 | GTAATTCCGAACGGAGGGAGT | 59.520 | 52.381 | 15.34 | 4.12 | 46.06 | 3.85 |
2501 | 2886 | 1.856629 | AATTCCGAACGGAGGGAGTA | 58.143 | 50.000 | 15.34 | 1.05 | 46.06 | 2.59 |
2505 | 2890 | 0.893447 | CCGAACGGAGGGAGTAGTTT | 59.107 | 55.000 | 7.53 | 0.00 | 37.50 | 2.66 |
2524 | 2909 | 3.500448 | TTGGTTGTCCAGCAAGACATA | 57.500 | 42.857 | 9.35 | 0.00 | 45.80 | 2.29 |
2605 | 2990 | 8.507524 | AGAAATACTGGCTGAACCTAATAAAC | 57.492 | 34.615 | 0.00 | 0.00 | 40.22 | 2.01 |
2634 | 3019 | 3.624861 | CGAAGTTGCATCCTTATTCTGCT | 59.375 | 43.478 | 0.00 | 0.00 | 36.84 | 4.24 |
2637 | 3022 | 4.122776 | AGTTGCATCCTTATTCTGCTACG | 58.877 | 43.478 | 0.00 | 0.00 | 43.32 | 3.51 |
2691 | 3076 | 2.909006 | TGTCCTGCTTCTGGAGATTCTT | 59.091 | 45.455 | 0.00 | 0.00 | 32.29 | 2.52 |
2694 | 3079 | 3.584406 | TCCTGCTTCTGGAGATTCTTCAA | 59.416 | 43.478 | 0.00 | 0.00 | 33.10 | 2.69 |
2776 | 3161 | 5.560760 | CGCACACACTGATACTGTTTTGATT | 60.561 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2938 | 3323 | 9.997482 | TGTAAATTATTCCGCTTCTTTTGATAC | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2962 | 3355 | 6.015940 | ACTGAATTTCTTGGATGGTTTGTCTC | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
2964 | 3357 | 6.550854 | TGAATTTCTTGGATGGTTTGTCTCTT | 59.449 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
2968 | 3361 | 4.943705 | TCTTGGATGGTTTGTCTCTTATGC | 59.056 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
3008 | 3401 | 1.734465 | GACTGGCTTCATCCTGTTTCG | 59.266 | 52.381 | 0.00 | 0.00 | 38.23 | 3.46 |
3084 | 3481 | 6.154534 | TGGTGTTGTCTATTATACAGTCTGCT | 59.845 | 38.462 | 0.00 | 0.00 | 0.00 | 4.24 |
3085 | 3482 | 7.042335 | GGTGTTGTCTATTATACAGTCTGCTT | 58.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
3086 | 3483 | 7.549488 | GGTGTTGTCTATTATACAGTCTGCTTT | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3087 | 3484 | 9.582431 | GTGTTGTCTATTATACAGTCTGCTTTA | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
3216 | 3620 | 6.089249 | AGAAACTTGACATGAAATTGGGTC | 57.911 | 37.500 | 0.00 | 0.00 | 0.00 | 4.46 |
3321 | 3726 | 1.455822 | TTGAATCCCCAGGTCTTGGT | 58.544 | 50.000 | 0.00 | 0.00 | 46.25 | 3.67 |
3414 | 3819 | 3.376636 | TGGCATTGGTGAATGGATCATT | 58.623 | 40.909 | 0.00 | 0.00 | 40.97 | 2.57 |
3453 | 3858 | 3.005554 | GCGCCATATCTACAATGCATCT | 58.994 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3468 | 3873 | 4.637483 | TGCATCTAAGCAAATTAGTGCC | 57.363 | 40.909 | 14.09 | 4.14 | 46.14 | 5.01 |
3500 | 3905 | 5.123186 | CGCCAGGTAAATTCACAGTTATCAA | 59.877 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3529 | 3934 | 2.498807 | TCTGCAGAGTAGCTTATGCG | 57.501 | 50.000 | 13.74 | 0.00 | 45.42 | 4.73 |
3534 | 3939 | 3.123804 | GCAGAGTAGCTTATGCGCTAAA | 58.876 | 45.455 | 9.73 | 1.38 | 43.51 | 1.85 |
3535 | 3940 | 3.743396 | GCAGAGTAGCTTATGCGCTAAAT | 59.257 | 43.478 | 9.73 | 0.00 | 43.51 | 1.40 |
3600 | 4005 | 2.408050 | GCAGTCATCATACGACATCCC | 58.592 | 52.381 | 0.00 | 0.00 | 35.77 | 3.85 |
3633 | 4038 | 7.038799 | GGGGAATATGCATTTGGATTCATTACT | 60.039 | 37.037 | 17.51 | 0.00 | 31.25 | 2.24 |
3661 | 4076 | 1.004394 | TCTCGCTCCAGGTCTTCACTA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3668 | 4083 | 5.241949 | CGCTCCAGGTCTTCACTATTATACT | 59.758 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3689 | 4116 | 5.128919 | ACTGAGTTCCCAATGATGATTAGC | 58.871 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
3695 | 4122 | 6.543831 | AGTTCCCAATGATGATTAGCTTACAC | 59.456 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
3696 | 4123 | 5.376625 | TCCCAATGATGATTAGCTTACACC | 58.623 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3740 | 4167 | 8.956533 | TTTATGCTCAGTATGCAGTTATGTTA | 57.043 | 30.769 | 0.00 | 0.00 | 44.04 | 2.41 |
3741 | 4168 | 9.559732 | TTTATGCTCAGTATGCAGTTATGTTAT | 57.440 | 29.630 | 0.00 | 0.00 | 44.04 | 1.89 |
3743 | 4170 | 5.991606 | TGCTCAGTATGCAGTTATGTTATCC | 59.008 | 40.000 | 0.00 | 0.00 | 35.31 | 2.59 |
3747 | 4174 | 6.986231 | TCAGTATGCAGTTATGTTATCCTGTG | 59.014 | 38.462 | 0.00 | 0.00 | 34.76 | 3.66 |
3751 | 4178 | 5.049828 | TGCAGTTATGTTATCCTGTGATCG | 58.950 | 41.667 | 0.00 | 0.00 | 32.18 | 3.69 |
3752 | 4179 | 4.449068 | GCAGTTATGTTATCCTGTGATCGG | 59.551 | 45.833 | 0.00 | 0.00 | 32.18 | 4.18 |
3753 | 4180 | 5.601662 | CAGTTATGTTATCCTGTGATCGGT | 58.398 | 41.667 | 0.00 | 0.00 | 32.18 | 4.69 |
3764 | 4200 | 3.370527 | CCTGTGATCGGTATGAACCCTTT | 60.371 | 47.826 | 0.00 | 0.00 | 43.54 | 3.11 |
3807 | 4243 | 9.665719 | AATTCAGTTTTACCACAAAATTTGACT | 57.334 | 25.926 | 13.19 | 0.59 | 0.00 | 3.41 |
3910 | 4346 | 9.512435 | CATTCTATTGTTTGCTCTGATTTAAGG | 57.488 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4115 | 4552 | 4.721132 | ACTCCTAAACTCTATCCTCTCGG | 58.279 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
4117 | 4554 | 4.462133 | TCCTAAACTCTATCCTCTCGGTG | 58.538 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
4334 | 4777 | 4.970611 | CCTGTTCGTCGATATCAAGTGTAG | 59.029 | 45.833 | 3.12 | 0.00 | 0.00 | 2.74 |
4350 | 4793 | 5.189659 | AGTGTAGAACTCTCAACACAGAC | 57.810 | 43.478 | 12.89 | 0.00 | 43.65 | 3.51 |
4502 | 4950 | 4.202151 | ACAATTGGCTTGGACTTTGTCTTC | 60.202 | 41.667 | 10.83 | 0.00 | 39.30 | 2.87 |
4619 | 5068 | 3.056179 | TCGGCATCAACAATGTCTGACTA | 60.056 | 43.478 | 9.51 | 0.00 | 37.87 | 2.59 |
4772 | 5221 | 4.836125 | TTGAAAGATCTGCTGGAACAAC | 57.164 | 40.909 | 0.00 | 0.00 | 38.70 | 3.32 |
4794 | 5243 | 8.239314 | ACAACAGTGATATGATAAACTTTGCAG | 58.761 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
4827 | 5278 | 8.031277 | GGAAAAATTAGCTGATGTGATCAACTT | 58.969 | 33.333 | 0.00 | 0.00 | 39.11 | 2.66 |
4844 | 5297 | 3.222173 | ACTTTGCACAATACTGGTGGA | 57.778 | 42.857 | 0.00 | 0.00 | 36.76 | 4.02 |
4863 | 5316 | 3.055094 | TGGAGACCAACCTAAGCATTCTC | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
4864 | 5317 | 3.055094 | GGAGACCAACCTAAGCATTCTCA | 60.055 | 47.826 | 0.00 | 0.00 | 31.48 | 3.27 |
4865 | 5318 | 4.384647 | GGAGACCAACCTAAGCATTCTCAT | 60.385 | 45.833 | 0.00 | 0.00 | 31.48 | 2.90 |
4866 | 5319 | 4.775236 | AGACCAACCTAAGCATTCTCATC | 58.225 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
4867 | 5320 | 4.472833 | AGACCAACCTAAGCATTCTCATCT | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
4868 | 5321 | 4.775236 | ACCAACCTAAGCATTCTCATCTC | 58.225 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
4869 | 5322 | 4.133078 | CCAACCTAAGCATTCTCATCTCC | 58.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
4870 | 5323 | 4.384537 | CCAACCTAAGCATTCTCATCTCCA | 60.385 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
4871 | 5324 | 4.414337 | ACCTAAGCATTCTCATCTCCAC | 57.586 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4872 | 5325 | 3.135530 | ACCTAAGCATTCTCATCTCCACC | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
4873 | 5326 | 3.135348 | CCTAAGCATTCTCATCTCCACCA | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
4874 | 5327 | 3.278668 | AAGCATTCTCATCTCCACCAG | 57.721 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
4875 | 5328 | 1.134159 | AGCATTCTCATCTCCACCAGC | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
4876 | 5329 | 1.964552 | CATTCTCATCTCCACCAGCC | 58.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4877 | 5330 | 1.489649 | CATTCTCATCTCCACCAGCCT | 59.510 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
4878 | 5331 | 2.550277 | TTCTCATCTCCACCAGCCTA | 57.450 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
4879 | 5332 | 2.550277 | TCTCATCTCCACCAGCCTAA | 57.450 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4880 | 5333 | 2.392662 | TCTCATCTCCACCAGCCTAAG | 58.607 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
4881 | 5334 | 0.833287 | TCATCTCCACCAGCCTAAGC | 59.167 | 55.000 | 0.00 | 0.00 | 40.32 | 3.09 |
4882 | 5335 | 0.543277 | CATCTCCACCAGCCTAAGCA | 59.457 | 55.000 | 0.00 | 0.00 | 43.56 | 3.91 |
4883 | 5336 | 1.142465 | CATCTCCACCAGCCTAAGCAT | 59.858 | 52.381 | 0.00 | 0.00 | 43.56 | 3.79 |
4884 | 5337 | 1.289160 | TCTCCACCAGCCTAAGCATT | 58.711 | 50.000 | 0.00 | 0.00 | 43.56 | 3.56 |
4885 | 5338 | 1.210478 | TCTCCACCAGCCTAAGCATTC | 59.790 | 52.381 | 0.00 | 0.00 | 43.56 | 2.67 |
4886 | 5339 | 1.211457 | CTCCACCAGCCTAAGCATTCT | 59.789 | 52.381 | 0.00 | 0.00 | 43.56 | 2.40 |
4933 | 5440 | 3.986128 | ACATTTCTATCGTTTTCGTGCG | 58.014 | 40.909 | 0.00 | 0.00 | 44.46 | 5.34 |
4940 | 5447 | 0.806884 | TCGTTTTCGTGCGTGGTTCT | 60.807 | 50.000 | 0.00 | 0.00 | 44.46 | 3.01 |
4941 | 5448 | 0.382636 | CGTTTTCGTGCGTGGTTCTC | 60.383 | 55.000 | 0.00 | 0.00 | 38.65 | 2.87 |
4981 | 5497 | 0.108424 | GACCTGCTCCTGCTACACAG | 60.108 | 60.000 | 0.00 | 0.00 | 46.77 | 3.66 |
5004 | 5547 | 2.240667 | AGCATGGTAAGATCTTGGCACT | 59.759 | 45.455 | 18.47 | 5.15 | 0.00 | 4.40 |
5015 | 5558 | 2.516906 | TCTTGGCACTGCATTCATCAA | 58.483 | 42.857 | 2.82 | 0.00 | 0.00 | 2.57 |
5022 | 5566 | 3.181503 | GCACTGCATTCATCAATCGTTCT | 60.182 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5059 | 5605 | 1.308069 | GGTTGGCGTGTGCATGATCT | 61.308 | 55.000 | 0.00 | 0.00 | 45.35 | 2.75 |
5066 | 5612 | 1.466866 | CGTGTGCATGATCTTGGCTTG | 60.467 | 52.381 | 10.35 | 0.00 | 0.00 | 4.01 |
5069 | 5615 | 2.089980 | GTGCATGATCTTGGCTTGACT | 58.910 | 47.619 | 10.35 | 0.00 | 0.00 | 3.41 |
5078 | 5624 | 3.728845 | TCTTGGCTTGACTACTGTTCAC | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
5079 | 5625 | 2.148916 | TGGCTTGACTACTGTTCACG | 57.851 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5080 | 5626 | 0.790814 | GGCTTGACTACTGTTCACGC | 59.209 | 55.000 | 3.20 | 3.20 | 0.00 | 5.34 |
5106 | 5655 | 2.357517 | CTTGCCGCCAGAGACGTT | 60.358 | 61.111 | 0.00 | 0.00 | 0.00 | 3.99 |
5116 | 5665 | 1.541233 | CCAGAGACGTTGCTCAAACCT | 60.541 | 52.381 | 6.99 | 0.00 | 37.37 | 3.50 |
5121 | 5670 | 2.250939 | CGTTGCTCAAACCTGCGGA | 61.251 | 57.895 | 0.00 | 0.00 | 35.13 | 5.54 |
5160 | 5957 | 0.323999 | TGCCTGGTCGCTAGGAACTA | 60.324 | 55.000 | 12.23 | 0.00 | 41.75 | 2.24 |
5176 | 5973 | 3.270877 | GAACTAGTTCCGCCATTGATGT | 58.729 | 45.455 | 22.74 | 0.00 | 33.64 | 3.06 |
5181 | 5978 | 1.031571 | TTCCGCCATTGATGTCAGCC | 61.032 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5196 | 5993 | 2.352960 | GTCAGCCCTCAAATCTTTAGCG | 59.647 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5207 | 6004 | 8.879759 | CCTCAAATCTTTAGCGTATGTAAAGAA | 58.120 | 33.333 | 16.64 | 6.48 | 45.25 | 2.52 |
5236 | 6033 | 4.477780 | GCTATCCTGATGAACTAGTACGC | 58.522 | 47.826 | 0.00 | 0.00 | 0.00 | 4.42 |
5239 | 6036 | 3.534554 | TCCTGATGAACTAGTACGCGTA | 58.465 | 45.455 | 16.41 | 16.41 | 0.00 | 4.42 |
5240 | 6037 | 3.558829 | TCCTGATGAACTAGTACGCGTAG | 59.441 | 47.826 | 21.25 | 12.98 | 0.00 | 3.51 |
5241 | 6038 | 3.558829 | CCTGATGAACTAGTACGCGTAGA | 59.441 | 47.826 | 21.25 | 9.97 | 0.00 | 2.59 |
5242 | 6039 | 4.318903 | CCTGATGAACTAGTACGCGTAGAG | 60.319 | 50.000 | 21.25 | 21.09 | 0.00 | 2.43 |
5243 | 6040 | 4.186926 | TGATGAACTAGTACGCGTAGAGT | 58.813 | 43.478 | 21.25 | 21.75 | 46.42 | 3.24 |
5244 | 6041 | 5.351458 | TGATGAACTAGTACGCGTAGAGTA | 58.649 | 41.667 | 25.84 | 16.15 | 39.99 | 2.59 |
5245 | 6042 | 5.987953 | TGATGAACTAGTACGCGTAGAGTAT | 59.012 | 40.000 | 25.84 | 19.11 | 45.81 | 2.12 |
5246 | 6043 | 7.147976 | TGATGAACTAGTACGCGTAGAGTATA | 58.852 | 38.462 | 25.84 | 19.66 | 45.81 | 1.47 |
5248 | 6045 | 9.295214 | GATGAACTAGTACGCGTAGAGTATATA | 57.705 | 37.037 | 25.84 | 16.12 | 45.81 | 0.86 |
5249 | 6046 | 8.454293 | TGAACTAGTACGCGTAGAGTATATAC | 57.546 | 38.462 | 25.84 | 13.14 | 45.81 | 1.47 |
5251 | 6048 | 8.682128 | AACTAGTACGCGTAGAGTATATACTC | 57.318 | 38.462 | 28.41 | 28.41 | 45.81 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 6.285224 | TGACCGATAAGTTTGAAGAAGTTCA | 58.715 | 36.000 | 5.50 | 0.00 | 41.13 | 3.18 |
2 | 3 | 6.780706 | TGACCGATAAGTTTGAAGAAGTTC | 57.219 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
3 | 4 | 6.540914 | TGTTGACCGATAAGTTTGAAGAAGTT | 59.459 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
5 | 6 | 6.018262 | TGTGTTGACCGATAAGTTTGAAGAAG | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
6 | 7 | 5.818336 | TGTGTTGACCGATAAGTTTGAAGAA | 59.182 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
7 | 8 | 5.361427 | TGTGTTGACCGATAAGTTTGAAGA | 58.639 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
8 | 9 | 5.666969 | TGTGTTGACCGATAAGTTTGAAG | 57.333 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
9 | 10 | 5.760743 | TCATGTGTTGACCGATAAGTTTGAA | 59.239 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
10 | 11 | 5.301555 | TCATGTGTTGACCGATAAGTTTGA | 58.698 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
11 | 12 | 5.408299 | TCTCATGTGTTGACCGATAAGTTTG | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
12 | 13 | 5.547465 | TCTCATGTGTTGACCGATAAGTTT | 58.453 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
13 | 14 | 5.147330 | TCTCATGTGTTGACCGATAAGTT | 57.853 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
14 | 15 | 4.801330 | TCTCATGTGTTGACCGATAAGT | 57.199 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
15 | 16 | 5.595885 | AGATCTCATGTGTTGACCGATAAG | 58.404 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
16 | 17 | 5.451937 | GGAGATCTCATGTGTTGACCGATAA | 60.452 | 44.000 | 23.85 | 0.00 | 0.00 | 1.75 |
17 | 18 | 4.038042 | GGAGATCTCATGTGTTGACCGATA | 59.962 | 45.833 | 23.85 | 0.00 | 0.00 | 2.92 |
18 | 19 | 3.181471 | GGAGATCTCATGTGTTGACCGAT | 60.181 | 47.826 | 23.85 | 0.00 | 0.00 | 4.18 |
19 | 20 | 2.166459 | GGAGATCTCATGTGTTGACCGA | 59.834 | 50.000 | 23.85 | 0.00 | 0.00 | 4.69 |
20 | 21 | 2.167281 | AGGAGATCTCATGTGTTGACCG | 59.833 | 50.000 | 23.85 | 0.00 | 0.00 | 4.79 |
21 | 22 | 3.196469 | TGAGGAGATCTCATGTGTTGACC | 59.804 | 47.826 | 23.85 | 3.42 | 46.71 | 4.02 |
22 | 23 | 4.462508 | TGAGGAGATCTCATGTGTTGAC | 57.537 | 45.455 | 23.85 | 4.19 | 46.71 | 3.18 |
55 | 56 | 5.933617 | AGATTTAATGAGCATGAGTGGCTA | 58.066 | 37.500 | 0.00 | 0.00 | 42.78 | 3.93 |
56 | 57 | 4.789807 | AGATTTAATGAGCATGAGTGGCT | 58.210 | 39.130 | 0.00 | 0.00 | 46.07 | 4.75 |
59 | 60 | 9.491675 | AGATCTAAGATTTAATGAGCATGAGTG | 57.508 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
102 | 104 | 4.811557 | CGGTCCTTTCATCCTCTTTATCAC | 59.188 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
113 | 115 | 2.487762 | TGCAATTCACGGTCCTTTCATC | 59.512 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
137 | 139 | 2.418976 | GTGGGGTTGACGATTTTCTAGC | 59.581 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
147 | 149 | 3.246112 | TGGGAGGTGGGGTTGACG | 61.246 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
153 | 155 | 2.204865 | TATTTGCGTGGGAGGTGGGG | 62.205 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
156 | 158 | 2.643551 | AGAATATTTGCGTGGGAGGTG | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
157 | 159 | 3.054361 | AGAAGAATATTTGCGTGGGAGGT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
163 | 165 | 8.292448 | AGCCATAATAAGAAGAATATTTGCGTG | 58.708 | 33.333 | 0.00 | 0.00 | 0.00 | 5.34 |
164 | 166 | 8.396272 | AGCCATAATAAGAAGAATATTTGCGT | 57.604 | 30.769 | 0.00 | 0.00 | 0.00 | 5.24 |
206 | 208 | 6.389622 | TTCTCGACGATGTTCACTAATTTG | 57.610 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
220 | 222 | 0.037326 | AAGCAAGGCATTCTCGACGA | 60.037 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
227 | 229 | 0.455633 | CGAGTGCAAGCAAGGCATTC | 60.456 | 55.000 | 0.00 | 8.89 | 44.11 | 2.67 |
250 | 252 | 7.395190 | TGAGAAATGTTGACATATTTGGAGG | 57.605 | 36.000 | 0.00 | 0.00 | 35.10 | 4.30 |
289 | 291 | 7.546778 | TTCTTTTTGCCCAAAATGTTCTTAC | 57.453 | 32.000 | 14.87 | 0.00 | 39.69 | 2.34 |
390 | 418 | 9.160412 | AGTGGCATAGTATAGAACCTTCTTATT | 57.840 | 33.333 | 0.00 | 0.00 | 38.70 | 1.40 |
418 | 454 | 4.526650 | GGCAGTTTGGATTCTCCCTAAAAA | 59.473 | 41.667 | 0.00 | 0.00 | 35.03 | 1.94 |
419 | 455 | 4.086457 | GGCAGTTTGGATTCTCCCTAAAA | 58.914 | 43.478 | 0.00 | 0.00 | 35.03 | 1.52 |
420 | 456 | 3.075283 | TGGCAGTTTGGATTCTCCCTAAA | 59.925 | 43.478 | 0.00 | 0.00 | 35.03 | 1.85 |
421 | 457 | 2.647299 | TGGCAGTTTGGATTCTCCCTAA | 59.353 | 45.455 | 0.00 | 0.00 | 35.03 | 2.69 |
422 | 458 | 2.026262 | GTGGCAGTTTGGATTCTCCCTA | 60.026 | 50.000 | 0.00 | 0.00 | 35.03 | 3.53 |
610 | 647 | 0.973496 | GAGGGGAGAGGAGACGCTTT | 60.973 | 60.000 | 0.00 | 0.00 | 42.18 | 3.51 |
611 | 648 | 1.380650 | GAGGGGAGAGGAGACGCTT | 60.381 | 63.158 | 0.00 | 0.00 | 42.18 | 4.68 |
632 | 669 | 4.787280 | AGGCACGAGGGAGGGGAG | 62.787 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
633 | 670 | 4.332543 | AAGGCACGAGGGAGGGGA | 62.333 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
634 | 671 | 4.101448 | CAAGGCACGAGGGAGGGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
635 | 672 | 4.101448 | CCAAGGCACGAGGGAGGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
636 | 673 | 4.785453 | GCCAAGGCACGAGGGAGG | 62.785 | 72.222 | 6.14 | 0.00 | 41.49 | 4.30 |
637 | 674 | 4.785453 | GGCCAAGGCACGAGGGAG | 62.785 | 72.222 | 13.87 | 0.00 | 44.11 | 4.30 |
644 | 681 | 4.662961 | GCAAACGGGCCAAGGCAC | 62.663 | 66.667 | 13.87 | 8.60 | 44.11 | 5.01 |
1206 | 1256 | 1.005394 | GAACGAGGCGTGAAGGGAA | 60.005 | 57.895 | 0.00 | 0.00 | 39.99 | 3.97 |
1272 | 1322 | 1.304381 | TGATTCCAACAGCCAGGCC | 60.304 | 57.895 | 8.22 | 0.00 | 0.00 | 5.19 |
1316 | 1368 | 0.745845 | AATAAGCTGTGAGCCGCCAG | 60.746 | 55.000 | 0.00 | 0.00 | 43.77 | 4.85 |
1321 | 1373 | 1.661112 | GACGACAATAAGCTGTGAGCC | 59.339 | 52.381 | 0.00 | 0.00 | 43.77 | 4.70 |
1338 | 1390 | 2.241722 | GCACAATCAACAAATCCGACG | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 5.12 |
1339 | 1391 | 2.241722 | CGCACAATCAACAAATCCGAC | 58.758 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
1340 | 1392 | 1.198867 | CCGCACAATCAACAAATCCGA | 59.801 | 47.619 | 0.00 | 0.00 | 0.00 | 4.55 |
1360 | 1412 | 6.541111 | AACAGTCATTTCGAACCTACTTTC | 57.459 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
1414 | 1466 | 0.544357 | TCACCAAGGGTCGACATCCT | 60.544 | 55.000 | 18.91 | 12.76 | 31.02 | 3.24 |
1450 | 1502 | 3.961408 | ACCACTCGATCCAATAGTTAGCT | 59.039 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1465 | 1517 | 3.073678 | TCATCACCAATTTGACCACTCG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
1607 | 1925 | 2.734755 | TGCCTTCTGTATGGGGATTG | 57.265 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1829 | 2150 | 6.003950 | ACCTCAGAAATACAAGCAAAGCTAA | 58.996 | 36.000 | 0.00 | 0.00 | 38.25 | 3.09 |
1978 | 2303 | 6.723298 | ACATGACTTTTGTTTTGTGGGATA | 57.277 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1990 | 2316 | 5.768317 | ACCATCCGTTTAACATGACTTTTG | 58.232 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
1991 | 2317 | 6.938030 | TCTACCATCCGTTTAACATGACTTTT | 59.062 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
2051 | 2377 | 8.378172 | TGCCTAAATTATTTCTGAATCGGTAG | 57.622 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2054 | 2380 | 7.496529 | TCTGCCTAAATTATTTCTGAATCGG | 57.503 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2141 | 2467 | 3.772025 | AGATAAGACCCAGAACCAGAGTG | 59.228 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
2248 | 2628 | 2.175715 | GGGTTCTTGCCTCCCATTCTAT | 59.824 | 50.000 | 0.00 | 0.00 | 40.79 | 1.98 |
2263 | 2643 | 2.334006 | ACACATCTCCTCTGGGTTCT | 57.666 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2397 | 2782 | 1.755380 | AGTAATTCCGAACGGAGGGAG | 59.245 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
2398 | 2783 | 1.856629 | AGTAATTCCGAACGGAGGGA | 58.143 | 50.000 | 15.34 | 2.49 | 46.06 | 4.20 |
2399 | 2784 | 2.277084 | CAAGTAATTCCGAACGGAGGG | 58.723 | 52.381 | 15.34 | 0.00 | 46.06 | 4.30 |
2400 | 2785 | 2.928116 | GACAAGTAATTCCGAACGGAGG | 59.072 | 50.000 | 15.34 | 4.52 | 46.06 | 4.30 |
2401 | 2786 | 2.597305 | CGACAAGTAATTCCGAACGGAG | 59.403 | 50.000 | 15.34 | 5.60 | 46.06 | 4.63 |
2402 | 2787 | 2.598589 | CGACAAGTAATTCCGAACGGA | 58.401 | 47.619 | 12.04 | 12.04 | 43.52 | 4.69 |
2403 | 2788 | 1.060122 | GCGACAAGTAATTCCGAACGG | 59.940 | 52.381 | 6.94 | 6.94 | 0.00 | 4.44 |
2404 | 2789 | 1.722464 | TGCGACAAGTAATTCCGAACG | 59.278 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
2405 | 2790 | 2.991190 | TCTGCGACAAGTAATTCCGAAC | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
2406 | 2791 | 3.306917 | TCTGCGACAAGTAATTCCGAA | 57.693 | 42.857 | 0.00 | 0.00 | 0.00 | 4.30 |
2407 | 2792 | 3.306917 | TTCTGCGACAAGTAATTCCGA | 57.693 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
2408 | 2793 | 4.334443 | CATTTCTGCGACAAGTAATTCCG | 58.666 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2409 | 2794 | 4.394920 | TCCATTTCTGCGACAAGTAATTCC | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2410 | 2795 | 5.545658 | TCCATTTCTGCGACAAGTAATTC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2411 | 2796 | 5.415701 | ACATCCATTTCTGCGACAAGTAATT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2412 | 2797 | 4.943705 | ACATCCATTTCTGCGACAAGTAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2413 | 2798 | 4.323417 | ACATCCATTTCTGCGACAAGTAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2414 | 2799 | 3.937814 | ACATCCATTTCTGCGACAAGTA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2415 | 2800 | 2.783135 | ACATCCATTTCTGCGACAAGT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2416 | 2801 | 4.813161 | AGATACATCCATTTCTGCGACAAG | 59.187 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2417 | 2802 | 4.769688 | AGATACATCCATTTCTGCGACAA | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2418 | 2803 | 4.406648 | AGATACATCCATTTCTGCGACA | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
2419 | 2804 | 7.761704 | ACATATAGATACATCCATTTCTGCGAC | 59.238 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
2420 | 2805 | 7.840931 | ACATATAGATACATCCATTTCTGCGA | 58.159 | 34.615 | 0.00 | 0.00 | 0.00 | 5.10 |
2421 | 2806 | 9.755804 | ATACATATAGATACATCCATTTCTGCG | 57.244 | 33.333 | 0.00 | 0.00 | 0.00 | 5.18 |
2448 | 2833 | 9.749340 | TCGGATATGGATGTATCTAGAACTAAA | 57.251 | 33.333 | 0.00 | 0.00 | 32.78 | 1.85 |
2449 | 2834 | 9.397280 | CTCGGATATGGATGTATCTAGAACTAA | 57.603 | 37.037 | 0.00 | 0.00 | 32.78 | 2.24 |
2450 | 2835 | 8.769359 | TCTCGGATATGGATGTATCTAGAACTA | 58.231 | 37.037 | 0.00 | 0.00 | 32.78 | 2.24 |
2451 | 2836 | 7.554835 | GTCTCGGATATGGATGTATCTAGAACT | 59.445 | 40.741 | 0.00 | 0.00 | 31.35 | 3.01 |
2452 | 2837 | 7.337184 | TGTCTCGGATATGGATGTATCTAGAAC | 59.663 | 40.741 | 0.00 | 0.00 | 31.35 | 3.01 |
2453 | 2838 | 7.402862 | TGTCTCGGATATGGATGTATCTAGAA | 58.597 | 38.462 | 0.00 | 0.00 | 31.35 | 2.10 |
2454 | 2839 | 6.958767 | TGTCTCGGATATGGATGTATCTAGA | 58.041 | 40.000 | 0.00 | 0.00 | 32.78 | 2.43 |
2455 | 2840 | 7.338196 | ACTTGTCTCGGATATGGATGTATCTAG | 59.662 | 40.741 | 0.00 | 0.00 | 32.78 | 2.43 |
2456 | 2841 | 7.175797 | ACTTGTCTCGGATATGGATGTATCTA | 58.824 | 38.462 | 0.00 | 0.00 | 32.78 | 1.98 |
2457 | 2842 | 6.013379 | ACTTGTCTCGGATATGGATGTATCT | 58.987 | 40.000 | 0.00 | 0.00 | 32.78 | 1.98 |
2458 | 2843 | 6.274157 | ACTTGTCTCGGATATGGATGTATC | 57.726 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2459 | 2844 | 7.776618 | TTACTTGTCTCGGATATGGATGTAT | 57.223 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2460 | 2845 | 7.776618 | ATTACTTGTCTCGGATATGGATGTA | 57.223 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2461 | 2846 | 6.672266 | ATTACTTGTCTCGGATATGGATGT | 57.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2462 | 2847 | 6.591834 | GGAATTACTTGTCTCGGATATGGATG | 59.408 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
2463 | 2848 | 6.572509 | CGGAATTACTTGTCTCGGATATGGAT | 60.573 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
2464 | 2849 | 5.278808 | CGGAATTACTTGTCTCGGATATGGA | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2465 | 2850 | 4.923871 | CGGAATTACTTGTCTCGGATATGG | 59.076 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
2466 | 2851 | 5.769367 | TCGGAATTACTTGTCTCGGATATG | 58.231 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
2467 | 2852 | 6.214399 | GTTCGGAATTACTTGTCTCGGATAT | 58.786 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
2468 | 2853 | 5.585390 | GTTCGGAATTACTTGTCTCGGATA | 58.415 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2469 | 2854 | 4.430908 | GTTCGGAATTACTTGTCTCGGAT | 58.569 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
2470 | 2855 | 3.671433 | CGTTCGGAATTACTTGTCTCGGA | 60.671 | 47.826 | 0.00 | 0.00 | 0.00 | 4.55 |
2471 | 2856 | 2.597305 | CGTTCGGAATTACTTGTCTCGG | 59.403 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2472 | 2857 | 2.597305 | CCGTTCGGAATTACTTGTCTCG | 59.403 | 50.000 | 5.19 | 0.00 | 0.00 | 4.04 |
2473 | 2858 | 3.841643 | TCCGTTCGGAATTACTTGTCTC | 58.158 | 45.455 | 11.66 | 0.00 | 0.00 | 3.36 |
2474 | 2859 | 3.368116 | CCTCCGTTCGGAATTACTTGTCT | 60.368 | 47.826 | 14.79 | 0.00 | 33.41 | 3.41 |
2475 | 2860 | 2.928116 | CCTCCGTTCGGAATTACTTGTC | 59.072 | 50.000 | 14.79 | 0.00 | 33.41 | 3.18 |
2476 | 2861 | 2.354403 | CCCTCCGTTCGGAATTACTTGT | 60.354 | 50.000 | 14.79 | 0.00 | 33.41 | 3.16 |
2477 | 2862 | 2.093869 | TCCCTCCGTTCGGAATTACTTG | 60.094 | 50.000 | 14.79 | 1.97 | 33.41 | 3.16 |
2478 | 2863 | 2.167900 | CTCCCTCCGTTCGGAATTACTT | 59.832 | 50.000 | 14.79 | 0.00 | 33.41 | 2.24 |
2479 | 2864 | 1.755380 | CTCCCTCCGTTCGGAATTACT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.24 |
2480 | 2865 | 1.479730 | ACTCCCTCCGTTCGGAATTAC | 59.520 | 52.381 | 14.79 | 0.00 | 33.41 | 1.89 |
2481 | 2866 | 1.856629 | ACTCCCTCCGTTCGGAATTA | 58.143 | 50.000 | 14.79 | 2.82 | 33.41 | 1.40 |
2482 | 2867 | 1.755380 | CTACTCCCTCCGTTCGGAATT | 59.245 | 52.381 | 14.79 | 0.00 | 33.41 | 2.17 |
2483 | 2868 | 1.341778 | ACTACTCCCTCCGTTCGGAAT | 60.342 | 52.381 | 14.79 | 2.09 | 33.41 | 3.01 |
2484 | 2869 | 0.038744 | ACTACTCCCTCCGTTCGGAA | 59.961 | 55.000 | 14.79 | 0.04 | 33.41 | 4.30 |
2485 | 2870 | 0.038744 | AACTACTCCCTCCGTTCGGA | 59.961 | 55.000 | 13.34 | 13.34 | 0.00 | 4.55 |
2486 | 2871 | 0.893447 | AAACTACTCCCTCCGTTCGG | 59.107 | 55.000 | 4.74 | 4.74 | 0.00 | 4.30 |
2487 | 2872 | 1.403780 | CCAAACTACTCCCTCCGTTCG | 60.404 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
2488 | 2873 | 1.622312 | ACCAAACTACTCCCTCCGTTC | 59.378 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
2489 | 2874 | 1.725803 | ACCAAACTACTCCCTCCGTT | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2490 | 2875 | 1.346722 | CAACCAAACTACTCCCTCCGT | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
2491 | 2876 | 1.346722 | ACAACCAAACTACTCCCTCCG | 59.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
2492 | 2877 | 2.290134 | GGACAACCAAACTACTCCCTCC | 60.290 | 54.545 | 0.00 | 0.00 | 35.97 | 4.30 |
2493 | 2878 | 2.370849 | TGGACAACCAAACTACTCCCTC | 59.629 | 50.000 | 0.00 | 0.00 | 43.91 | 4.30 |
2494 | 2879 | 2.372172 | CTGGACAACCAAACTACTCCCT | 59.628 | 50.000 | 0.00 | 0.00 | 46.32 | 4.20 |
2495 | 2880 | 2.779506 | CTGGACAACCAAACTACTCCC | 58.220 | 52.381 | 0.00 | 0.00 | 46.32 | 4.30 |
2496 | 2881 | 2.152016 | GCTGGACAACCAAACTACTCC | 58.848 | 52.381 | 0.00 | 0.00 | 46.32 | 3.85 |
2497 | 2882 | 2.846193 | TGCTGGACAACCAAACTACTC | 58.154 | 47.619 | 0.00 | 0.00 | 46.32 | 2.59 |
2498 | 2883 | 3.118038 | TCTTGCTGGACAACCAAACTACT | 60.118 | 43.478 | 0.00 | 0.00 | 46.32 | 2.57 |
2499 | 2884 | 3.003378 | GTCTTGCTGGACAACCAAACTAC | 59.997 | 47.826 | 5.09 | 0.00 | 46.32 | 2.73 |
2500 | 2885 | 3.211045 | GTCTTGCTGGACAACCAAACTA | 58.789 | 45.455 | 5.09 | 0.00 | 46.32 | 2.24 |
2501 | 2886 | 2.024414 | GTCTTGCTGGACAACCAAACT | 58.976 | 47.619 | 5.09 | 0.00 | 46.32 | 2.66 |
2524 | 2909 | 6.332630 | CAGACTTCACAAAAAGGAACAACAT | 58.667 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2605 | 2990 | 3.185246 | AGGATGCAACTTCGAGTATGG | 57.815 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2634 | 3019 | 3.517602 | GTGTGCATATTCACTGGTCGTA | 58.482 | 45.455 | 7.03 | 0.00 | 37.81 | 3.43 |
2637 | 3022 | 2.710377 | TGGTGTGCATATTCACTGGTC | 58.290 | 47.619 | 7.03 | 0.00 | 37.81 | 4.02 |
2691 | 3076 | 9.739276 | ATAATTTCAGACAGGTATTGAGTTTGA | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2694 | 3079 | 9.520515 | AACATAATTTCAGACAGGTATTGAGTT | 57.479 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2938 | 3323 | 6.208204 | AGAGACAAACCATCCAAGAAATTCAG | 59.792 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2968 | 3361 | 7.965107 | GCCAGTCATTTATTGAAGAAACTACAG | 59.035 | 37.037 | 0.00 | 0.00 | 35.70 | 2.74 |
3008 | 3401 | 2.876581 | ACAGGATCAAACCCCAAAGTC | 58.123 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
3084 | 3481 | 8.524487 | AGGTTCCGCATACAAATTACAAATAAA | 58.476 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3085 | 3482 | 8.057536 | AGGTTCCGCATACAAATTACAAATAA | 57.942 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3086 | 3483 | 7.633193 | AGGTTCCGCATACAAATTACAAATA | 57.367 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3087 | 3484 | 6.524101 | AGGTTCCGCATACAAATTACAAAT | 57.476 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3088 | 3485 | 5.968528 | AGGTTCCGCATACAAATTACAAA | 57.031 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
3089 | 3486 | 7.450124 | TTTAGGTTCCGCATACAAATTACAA | 57.550 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3090 | 3487 | 7.450124 | TTTTAGGTTCCGCATACAAATTACA | 57.550 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3091 | 3488 | 8.024865 | AGTTTTTAGGTTCCGCATACAAATTAC | 58.975 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
3158 | 3556 | 9.102757 | GCAGACATTTAAGAATCTAATGACTCA | 57.897 | 33.333 | 11.49 | 0.00 | 33.97 | 3.41 |
3160 | 3558 | 9.453572 | TTGCAGACATTTAAGAATCTAATGACT | 57.546 | 29.630 | 11.49 | 8.30 | 35.65 | 3.41 |
3179 | 3577 | 5.911838 | GTCAAGTTTCTCAGATTTTGCAGAC | 59.088 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3414 | 3819 | 1.875262 | CACAAGTGGCATGCGCTTA | 59.125 | 52.632 | 20.69 | 2.71 | 38.60 | 3.09 |
3453 | 3858 | 5.347635 | CGATATAGCGGCACTAATTTGCTTA | 59.652 | 40.000 | 1.57 | 0.00 | 42.56 | 3.09 |
3468 | 3873 | 4.091509 | GTGAATTTACCTGGCGATATAGCG | 59.908 | 45.833 | 5.91 | 5.91 | 38.18 | 4.26 |
3500 | 3905 | 6.669125 | AGCTACTCTGCAGATTGAATATCT | 57.331 | 37.500 | 18.63 | 4.00 | 34.99 | 1.98 |
3600 | 4005 | 4.321899 | CCAAATGCATATTCCCCAATACGG | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
3633 | 4038 | 0.820226 | CCTGGAGCGAGACTGATGAA | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3668 | 4083 | 5.378230 | AGCTAATCATCATTGGGAACTCA | 57.622 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3716 | 4143 | 9.208022 | GATAACATAACTGCATACTGAGCATAA | 57.792 | 33.333 | 0.00 | 0.00 | 41.82 | 1.90 |
3740 | 4167 | 2.368875 | GGGTTCATACCGATCACAGGAT | 59.631 | 50.000 | 0.00 | 0.00 | 46.04 | 3.24 |
3741 | 4168 | 1.760613 | GGGTTCATACCGATCACAGGA | 59.239 | 52.381 | 0.00 | 0.00 | 46.04 | 3.86 |
3743 | 4170 | 3.543680 | AAGGGTTCATACCGATCACAG | 57.456 | 47.619 | 0.00 | 0.00 | 46.04 | 3.66 |
3764 | 4200 | 5.539574 | ACTGAATTTCAACATTCCACCATGA | 59.460 | 36.000 | 0.01 | 0.00 | 32.86 | 3.07 |
3771 | 4207 | 7.708752 | TGTGGTAAAACTGAATTTCAACATTCC | 59.291 | 33.333 | 0.01 | 1.08 | 32.86 | 3.01 |
3890 | 4326 | 8.624776 | GCTATACCTTAAATCAGAGCAAACAAT | 58.375 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
3893 | 4329 | 7.793927 | AGCTATACCTTAAATCAGAGCAAAC | 57.206 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
3910 | 4346 | 7.493971 | ACACATTCAGATGAGTCAAAGCTATAC | 59.506 | 37.037 | 0.00 | 0.00 | 32.59 | 1.47 |
4115 | 4552 | 4.390297 | GGAGCAGATTAACAGACAAGACAC | 59.610 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
4117 | 4554 | 4.569943 | TGGAGCAGATTAACAGACAAGAC | 58.430 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
4334 | 4777 | 2.866762 | GTGTGGTCTGTGTTGAGAGTTC | 59.133 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4502 | 4950 | 2.111043 | ATCTGGGGCGGCATTACG | 59.889 | 61.111 | 12.47 | 0.00 | 0.00 | 3.18 |
4619 | 5068 | 6.378848 | TGTTTTCTTTTACAGTAAGGCACCTT | 59.621 | 34.615 | 7.20 | 7.20 | 39.83 | 3.50 |
4772 | 5221 | 8.121086 | CAGACTGCAAAGTTTATCATATCACTG | 58.879 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
4794 | 5243 | 5.105997 | ACATCAGCTAATTTTTCCAGCAGAC | 60.106 | 40.000 | 0.30 | 0.00 | 37.78 | 3.51 |
4827 | 5278 | 2.552155 | GGTCTCCACCAGTATTGTGCAA | 60.552 | 50.000 | 0.00 | 0.00 | 43.17 | 4.08 |
4844 | 5297 | 4.472833 | AGATGAGAATGCTTAGGTTGGTCT | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4853 | 5306 | 3.432749 | GCTGGTGGAGATGAGAATGCTTA | 60.433 | 47.826 | 0.00 | 0.00 | 0.00 | 3.09 |
4863 | 5316 | 0.543277 | TGCTTAGGCTGGTGGAGATG | 59.457 | 55.000 | 0.00 | 0.00 | 39.59 | 2.90 |
4864 | 5317 | 1.516110 | ATGCTTAGGCTGGTGGAGAT | 58.484 | 50.000 | 0.00 | 0.00 | 39.59 | 2.75 |
4865 | 5318 | 1.210478 | GAATGCTTAGGCTGGTGGAGA | 59.790 | 52.381 | 0.00 | 0.00 | 39.59 | 3.71 |
4866 | 5319 | 1.211457 | AGAATGCTTAGGCTGGTGGAG | 59.789 | 52.381 | 0.00 | 0.00 | 39.59 | 3.86 |
4867 | 5320 | 1.210478 | GAGAATGCTTAGGCTGGTGGA | 59.790 | 52.381 | 0.00 | 0.00 | 39.59 | 4.02 |
4868 | 5321 | 1.065199 | TGAGAATGCTTAGGCTGGTGG | 60.065 | 52.381 | 0.00 | 0.00 | 39.59 | 4.61 |
4869 | 5322 | 2.408271 | TGAGAATGCTTAGGCTGGTG | 57.592 | 50.000 | 0.00 | 0.00 | 39.59 | 4.17 |
4870 | 5323 | 3.659183 | AATGAGAATGCTTAGGCTGGT | 57.341 | 42.857 | 0.00 | 0.00 | 39.59 | 4.00 |
4871 | 5324 | 4.205587 | AGAAATGAGAATGCTTAGGCTGG | 58.794 | 43.478 | 0.00 | 0.00 | 39.59 | 4.85 |
4872 | 5325 | 4.275443 | GGAGAAATGAGAATGCTTAGGCTG | 59.725 | 45.833 | 0.00 | 0.00 | 39.59 | 4.85 |
4873 | 5326 | 4.080129 | TGGAGAAATGAGAATGCTTAGGCT | 60.080 | 41.667 | 0.00 | 0.00 | 39.59 | 4.58 |
4874 | 5327 | 4.036144 | GTGGAGAAATGAGAATGCTTAGGC | 59.964 | 45.833 | 0.00 | 0.00 | 39.26 | 3.93 |
4875 | 5328 | 4.272018 | CGTGGAGAAATGAGAATGCTTAGG | 59.728 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
4876 | 5329 | 4.272018 | CCGTGGAGAAATGAGAATGCTTAG | 59.728 | 45.833 | 0.00 | 0.00 | 0.00 | 2.18 |
4877 | 5330 | 4.081142 | TCCGTGGAGAAATGAGAATGCTTA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
4878 | 5331 | 3.012518 | CCGTGGAGAAATGAGAATGCTT | 58.987 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
4879 | 5332 | 2.237143 | TCCGTGGAGAAATGAGAATGCT | 59.763 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
4880 | 5333 | 2.632377 | TCCGTGGAGAAATGAGAATGC | 58.368 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
4881 | 5334 | 6.925610 | TTTATCCGTGGAGAAATGAGAATG | 57.074 | 37.500 | 4.65 | 0.00 | 31.47 | 2.67 |
4882 | 5335 | 8.408601 | CAAATTTATCCGTGGAGAAATGAGAAT | 58.591 | 33.333 | 19.14 | 3.87 | 42.80 | 2.40 |
4883 | 5336 | 7.609918 | TCAAATTTATCCGTGGAGAAATGAGAA | 59.390 | 33.333 | 19.14 | 6.08 | 42.80 | 2.87 |
4884 | 5337 | 7.065803 | GTCAAATTTATCCGTGGAGAAATGAGA | 59.934 | 37.037 | 19.14 | 16.51 | 42.80 | 3.27 |
4885 | 5338 | 7.066284 | AGTCAAATTTATCCGTGGAGAAATGAG | 59.934 | 37.037 | 19.14 | 14.92 | 42.80 | 2.90 |
4886 | 5339 | 6.884295 | AGTCAAATTTATCCGTGGAGAAATGA | 59.116 | 34.615 | 19.14 | 13.17 | 42.80 | 2.57 |
4922 | 5375 | 0.382636 | GAGAACCACGCACGAAAACG | 60.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.60 |
4933 | 5440 | 3.191791 | GTCTAGACCAGTCAGAGAACCAC | 59.808 | 52.174 | 12.13 | 0.00 | 0.00 | 4.16 |
4940 | 5447 | 5.648526 | GTCAATGTAGTCTAGACCAGTCAGA | 59.351 | 44.000 | 19.38 | 8.64 | 0.00 | 3.27 |
4941 | 5448 | 5.163602 | GGTCAATGTAGTCTAGACCAGTCAG | 60.164 | 48.000 | 19.38 | 6.45 | 46.15 | 3.51 |
4981 | 5497 | 1.336125 | GCCAAGATCTTACCATGCTGC | 59.664 | 52.381 | 7.86 | 0.00 | 0.00 | 5.25 |
4992 | 5508 | 2.502142 | TGAATGCAGTGCCAAGATCT | 57.498 | 45.000 | 13.72 | 0.00 | 0.00 | 2.75 |
5004 | 5547 | 4.023792 | GCCATAGAACGATTGATGAATGCA | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.96 |
5015 | 5558 | 4.192317 | GGTTCTGAAAGCCATAGAACGAT | 58.808 | 43.478 | 0.00 | 0.00 | 46.95 | 3.73 |
5022 | 5566 | 3.737559 | ACCATGGTTCTGAAAGCCATA | 57.262 | 42.857 | 13.00 | 0.00 | 40.68 | 2.74 |
5048 | 5594 | 1.814394 | GTCAAGCCAAGATCATGCACA | 59.186 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
5059 | 5605 | 2.479837 | CGTGAACAGTAGTCAAGCCAA | 58.520 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
5066 | 5612 | 2.263077 | CATCCTGCGTGAACAGTAGTC | 58.737 | 52.381 | 0.00 | 0.00 | 35.83 | 2.59 |
5069 | 5615 | 1.939381 | GCACATCCTGCGTGAACAGTA | 60.939 | 52.381 | 0.00 | 0.00 | 35.72 | 2.74 |
5136 | 5685 | 4.082523 | TAGCGACCAGGCACCTGC | 62.083 | 66.667 | 11.39 | 0.00 | 42.35 | 4.85 |
5140 | 5689 | 1.448013 | GTTCCTAGCGACCAGGCAC | 60.448 | 63.158 | 0.00 | 0.00 | 32.82 | 5.01 |
5143 | 5692 | 1.765230 | ACTAGTTCCTAGCGACCAGG | 58.235 | 55.000 | 0.00 | 0.00 | 37.57 | 4.45 |
5160 | 5957 | 1.742761 | CTGACATCAATGGCGGAACT | 58.257 | 50.000 | 0.00 | 0.00 | 45.26 | 3.01 |
5162 | 5959 | 1.031571 | GGCTGACATCAATGGCGGAA | 61.032 | 55.000 | 8.90 | 0.00 | 45.26 | 4.30 |
5170 | 5967 | 3.726557 | AGATTTGAGGGCTGACATCAA | 57.273 | 42.857 | 6.48 | 6.48 | 46.99 | 2.57 |
5176 | 5973 | 2.027192 | ACGCTAAAGATTTGAGGGCTGA | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
5181 | 5978 | 8.420374 | TCTTTACATACGCTAAAGATTTGAGG | 57.580 | 34.615 | 1.99 | 0.00 | 35.98 | 3.86 |
5196 | 5993 | 7.439655 | CAGGATAGCCTTGTCTTCTTTACATAC | 59.560 | 40.741 | 0.00 | 0.00 | 43.90 | 2.39 |
5207 | 6004 | 4.036518 | AGTTCATCAGGATAGCCTTGTCT | 58.963 | 43.478 | 0.00 | 0.00 | 43.90 | 3.41 |
5236 | 6033 | 8.093307 | TCTGGTACAAGGAGTATATACTCTACG | 58.907 | 40.741 | 32.00 | 23.97 | 45.18 | 3.51 |
5239 | 6036 | 9.884814 | ATTTCTGGTACAAGGAGTATATACTCT | 57.115 | 33.333 | 32.00 | 20.00 | 45.18 | 3.24 |
5245 | 6042 | 8.582437 | CGGAATATTTCTGGTACAAGGAGTATA | 58.418 | 37.037 | 0.00 | 0.00 | 38.70 | 1.47 |
5246 | 6043 | 7.442656 | CGGAATATTTCTGGTACAAGGAGTAT | 58.557 | 38.462 | 0.00 | 0.00 | 38.70 | 2.12 |
5248 | 6045 | 5.671493 | CGGAATATTTCTGGTACAAGGAGT | 58.329 | 41.667 | 0.00 | 0.00 | 38.70 | 3.85 |
5261 | 6058 | 7.227910 | TGAAACAATAGCTACCCGGAATATTTC | 59.772 | 37.037 | 0.73 | 1.41 | 0.00 | 2.17 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.