Multiple sequence alignment - TraesCS1A01G348700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G348700 chr1A 100.000 4317 0 0 978 5294 534046916 534042600 0.000000e+00 7973
1 TraesCS1A01G348700 chr1A 100.000 685 0 0 1 685 534047893 534047209 0.000000e+00 1266
2 TraesCS1A01G348700 chr1A 85.126 995 71 42 4342 5294 534028545 534027586 0.000000e+00 946
3 TraesCS1A01G348700 chr1A 86.091 683 78 11 1048 1717 389836195 389836873 0.000000e+00 719
4 TraesCS1A01G348700 chr1A 79.787 564 78 22 4341 4869 534025991 534025429 1.390000e-100 377
5 TraesCS1A01G348700 chr1A 96.552 116 4 0 2391 2506 403636553 403636438 5.410000e-45 193
6 TraesCS1A01G348700 chr1A 95.122 123 3 3 2384 2506 493212936 493213055 1.950000e-44 191
7 TraesCS1A01G348700 chr1A 91.304 92 3 4 4025 4115 534026193 534026106 2.590000e-23 121
8 TraesCS1A01G348700 chr1D 93.408 2412 99 24 2501 4871 436985509 436983117 0.000000e+00 3518
9 TraesCS1A01G348700 chr1D 95.160 909 35 6 1495 2397 436986413 436985508 0.000000e+00 1426
10 TraesCS1A01G348700 chr1D 93.301 627 37 3 978 1603 436987055 436986433 0.000000e+00 920
11 TraesCS1A01G348700 chr1D 86.969 683 69 13 1048 1717 59199537 59198862 0.000000e+00 750
12 TraesCS1A01G348700 chr1D 88.146 329 15 10 313 632 436987430 436987117 2.330000e-98 370
13 TraesCS1A01G348700 chr1D 78.261 299 23 17 4879 5135 436983081 436982783 2.550000e-33 154
14 TraesCS1A01G348700 chr1D 80.319 188 25 9 4025 4207 436981810 436981630 1.200000e-26 132
15 TraesCS1A01G348700 chr1B 88.559 2657 174 58 2729 5294 592054382 592051765 0.000000e+00 3103
16 TraesCS1A01G348700 chr1B 91.249 2194 122 26 2729 4872 592168594 592166421 0.000000e+00 2924
17 TraesCS1A01G348700 chr1B 90.656 2194 134 31 2729 4872 592100092 592097920 0.000000e+00 2850
18 TraesCS1A01G348700 chr1B 90.652 2193 134 31 2729 4871 592129914 592127743 0.000000e+00 2848
19 TraesCS1A01G348700 chr1B 91.102 753 45 9 1495 2243 592169718 592168984 0.000000e+00 1000
20 TraesCS1A01G348700 chr1B 92.663 627 40 4 978 1603 592170359 592169738 0.000000e+00 898
21 TraesCS1A01G348700 chr1B 86.912 680 71 14 1051 1717 10917828 10917154 0.000000e+00 747
22 TraesCS1A01G348700 chr1B 82.513 772 105 20 4029 4794 592040411 592039664 0.000000e+00 651
23 TraesCS1A01G348700 chr1B 83.203 637 47 25 33 632 592171034 592170421 3.630000e-146 529
24 TraesCS1A01G348700 chr1B 80.462 476 45 29 4029 4499 592164669 592164237 2.380000e-83 320
25 TraesCS1A01G348700 chr1B 83.425 362 37 7 4341 4701 592048014 592047675 1.110000e-81 315
26 TraesCS1A01G348700 chr1B 88.596 114 12 1 3882 3995 592050535 592050423 2.570000e-28 137
27 TraesCS1A01G348700 chr1B 86.607 112 11 2 3887 3995 592164779 592164669 2.590000e-23 121
28 TraesCS1A01G348700 chr2D 91.124 1183 84 15 1211 2386 253820022 253818854 0.000000e+00 1583
29 TraesCS1A01G348700 chr2A 90.609 1182 95 10 1211 2386 78749431 78750602 0.000000e+00 1554
30 TraesCS1A01G348700 chr6B 90.440 1182 97 10 1211 2386 706049436 706048265 0.000000e+00 1543
31 TraesCS1A01G348700 chr5B 90.042 1185 91 14 1211 2386 261351100 261352266 0.000000e+00 1509
32 TraesCS1A01G348700 chr4B 88.081 1183 90 11 1211 2386 403439509 403440647 0.000000e+00 1356
33 TraesCS1A01G348700 chr4B 89.450 891 62 7 1502 2386 361073164 361072300 0.000000e+00 1096
34 TraesCS1A01G348700 chr3B 91.848 736 54 5 1654 2386 639278281 639277549 0.000000e+00 1022
35 TraesCS1A01G348700 chr7A 86.111 684 76 14 1048 1717 538291017 538291695 0.000000e+00 719
36 TraesCS1A01G348700 chr7A 98.246 114 2 0 2395 2508 513215693 513215580 3.230000e-47 200
37 TraesCS1A01G348700 chr7A 98.182 110 2 0 2396 2505 9642379 9642488 5.410000e-45 193
38 TraesCS1A01G348700 chr7A 95.082 122 5 1 2386 2506 398370377 398370498 1.950000e-44 191
39 TraesCS1A01G348700 chr6A 95.082 122 4 2 2381 2502 505440525 505440406 1.950000e-44 191
40 TraesCS1A01G348700 chr5D 95.082 122 5 1 2386 2506 193234616 193234737 1.950000e-44 191
41 TraesCS1A01G348700 chrUn 93.600 125 8 0 2385 2509 260324617 260324741 2.520000e-43 187
42 TraesCS1A01G348700 chr4A 96.364 110 4 0 2396 2505 181949516 181949407 1.170000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G348700 chr1A 534042600 534047893 5293 True 4619.500000 7973 100.000000 1 5294 2 chr1A.!!$R3 5293
1 TraesCS1A01G348700 chr1A 389836195 389836873 678 False 719.000000 719 86.091000 1048 1717 1 chr1A.!!$F1 669
2 TraesCS1A01G348700 chr1A 534025429 534028545 3116 True 481.333333 946 85.405667 4025 5294 3 chr1A.!!$R2 1269
3 TraesCS1A01G348700 chr1D 436981630 436987430 5800 True 1086.666667 3518 88.099167 313 5135 6 chr1D.!!$R2 4822
4 TraesCS1A01G348700 chr1D 59198862 59199537 675 True 750.000000 750 86.969000 1048 1717 1 chr1D.!!$R1 669
5 TraesCS1A01G348700 chr1B 592097920 592100092 2172 True 2850.000000 2850 90.656000 2729 4872 1 chr1B.!!$R3 2143
6 TraesCS1A01G348700 chr1B 592127743 592129914 2171 True 2848.000000 2848 90.652000 2729 4871 1 chr1B.!!$R4 2142
7 TraesCS1A01G348700 chr1B 592047675 592054382 6707 True 1185.000000 3103 86.860000 2729 5294 3 chr1B.!!$R5 2565
8 TraesCS1A01G348700 chr1B 592164237 592171034 6797 True 965.333333 2924 87.547667 33 4872 6 chr1B.!!$R6 4839
9 TraesCS1A01G348700 chr1B 10917154 10917828 674 True 747.000000 747 86.912000 1051 1717 1 chr1B.!!$R1 666
10 TraesCS1A01G348700 chr1B 592039664 592040411 747 True 651.000000 651 82.513000 4029 4794 1 chr1B.!!$R2 765
11 TraesCS1A01G348700 chr2D 253818854 253820022 1168 True 1583.000000 1583 91.124000 1211 2386 1 chr2D.!!$R1 1175
12 TraesCS1A01G348700 chr2A 78749431 78750602 1171 False 1554.000000 1554 90.609000 1211 2386 1 chr2A.!!$F1 1175
13 TraesCS1A01G348700 chr6B 706048265 706049436 1171 True 1543.000000 1543 90.440000 1211 2386 1 chr6B.!!$R1 1175
14 TraesCS1A01G348700 chr5B 261351100 261352266 1166 False 1509.000000 1509 90.042000 1211 2386 1 chr5B.!!$F1 1175
15 TraesCS1A01G348700 chr4B 403439509 403440647 1138 False 1356.000000 1356 88.081000 1211 2386 1 chr4B.!!$F1 1175
16 TraesCS1A01G348700 chr4B 361072300 361073164 864 True 1096.000000 1096 89.450000 1502 2386 1 chr4B.!!$R1 884
17 TraesCS1A01G348700 chr3B 639277549 639278281 732 True 1022.000000 1022 91.848000 1654 2386 1 chr3B.!!$R1 732
18 TraesCS1A01G348700 chr7A 538291017 538291695 678 False 719.000000 719 86.111000 1048 1717 1 chr7A.!!$F3 669


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.252881 TCTCCTCATGGCTTGGGAGT 60.253 55.000 24.12 0.00 40.72 3.85 F
1338 1390 0.375106 GCGGCTCACAGCTTATTGTC 59.625 55.000 0.00 0.00 41.99 3.18 F
2412 2797 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30 F
2505 2890 0.893447 CCGAACGGAGGGAGTAGTTT 59.107 55.000 7.53 0.00 37.50 2.66 F
3661 4076 1.004394 TCTCGCTCCAGGTCTTCACTA 59.996 52.381 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1466 0.544357 TCACCAAGGGTCGACATCCT 60.544 55.000 18.91 12.76 31.02 3.24 R
2484 2869 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R
3633 4038 0.820226 CCTGGAGCGAGACTGATGAA 59.180 55.000 0.00 0.00 0.00 2.57 R
3741 4168 1.760613 GGGTTCATACCGATCACAGGA 59.239 52.381 0.00 0.00 46.04 3.86 R
4922 5375 0.382636 GAGAACCACGCACGAAAACG 60.383 55.000 0.00 0.00 0.00 3.60 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.780706 TGAACTTCTTCAAACTTATCGGTC 57.219 37.500 0.00 0.00 33.20 4.79
25 26 6.285224 TGAACTTCTTCAAACTTATCGGTCA 58.715 36.000 0.00 0.00 33.20 4.02
26 27 6.764085 TGAACTTCTTCAAACTTATCGGTCAA 59.236 34.615 0.00 0.00 33.20 3.18
27 28 6.541111 ACTTCTTCAAACTTATCGGTCAAC 57.459 37.500 0.00 0.00 0.00 3.18
28 29 6.053005 ACTTCTTCAAACTTATCGGTCAACA 58.947 36.000 0.00 0.00 0.00 3.33
29 30 5.917541 TCTTCAAACTTATCGGTCAACAC 57.082 39.130 0.00 0.00 0.00 3.32
30 31 5.361427 TCTTCAAACTTATCGGTCAACACA 58.639 37.500 0.00 0.00 0.00 3.72
31 32 5.995282 TCTTCAAACTTATCGGTCAACACAT 59.005 36.000 0.00 0.00 0.00 3.21
55 56 0.252881 TCTCCTCATGGCTTGGGAGT 60.253 55.000 24.12 0.00 40.72 3.85
56 57 1.008327 TCTCCTCATGGCTTGGGAGTA 59.992 52.381 24.12 15.08 40.72 2.59
74 75 4.760530 AGTAGCCACTCATGCTCATTAA 57.239 40.909 0.00 0.00 40.23 1.40
78 79 4.789807 AGCCACTCATGCTCATTAAATCT 58.210 39.130 0.00 0.00 32.41 2.40
113 115 2.182825 CGTTCGGACGTGATAAAGAGG 58.817 52.381 8.45 0.00 44.08 3.69
122 124 5.395324 GGACGTGATAAAGAGGATGAAAGGA 60.395 44.000 0.00 0.00 0.00 3.36
151 153 3.038788 TGCACAGCTAGAAAATCGTCA 57.961 42.857 0.00 0.00 0.00 4.35
153 155 3.186409 TGCACAGCTAGAAAATCGTCAAC 59.814 43.478 0.00 0.00 0.00 3.18
156 158 2.678336 CAGCTAGAAAATCGTCAACCCC 59.322 50.000 0.00 0.00 0.00 4.95
157 159 2.304761 AGCTAGAAAATCGTCAACCCCA 59.695 45.455 0.00 0.00 0.00 4.96
163 165 1.848886 AATCGTCAACCCCACCTCCC 61.849 60.000 0.00 0.00 0.00 4.30
164 166 3.246112 CGTCAACCCCACCTCCCA 61.246 66.667 0.00 0.00 0.00 4.37
166 168 3.246112 TCAACCCCACCTCCCACG 61.246 66.667 0.00 0.00 0.00 4.94
170 172 4.278513 CCCCACCTCCCACGCAAA 62.279 66.667 0.00 0.00 0.00 3.68
179 181 3.054361 ACCTCCCACGCAAATATTCTTCT 60.054 43.478 0.00 0.00 0.00 2.85
180 182 3.947834 CCTCCCACGCAAATATTCTTCTT 59.052 43.478 0.00 0.00 0.00 2.52
227 229 5.763444 ACAAATTAGTGAACATCGTCGAG 57.237 39.130 0.00 0.00 0.00 4.04
250 252 2.328099 CCTTGCTTGCACTCGTCCC 61.328 63.158 0.00 0.00 0.00 4.46
272 274 5.658190 CCCCTCCAAATATGTCAACATTTCT 59.342 40.000 0.20 0.00 37.76 2.52
306 308 6.909550 ATTGTAGTAAGAACATTTTGGGCA 57.090 33.333 0.00 0.00 0.00 5.36
307 309 6.716934 TTGTAGTAAGAACATTTTGGGCAA 57.283 33.333 0.00 0.00 0.00 4.52
311 313 7.708752 TGTAGTAAGAACATTTTGGGCAAAAAG 59.291 33.333 5.92 1.20 42.71 2.27
316 318 7.459795 AGAACATTTTGGGCAAAAAGAAAAA 57.540 28.000 5.92 0.00 42.71 1.94
326 328 6.540551 TGGGCAAAAAGAAAAAGGAATTGTAC 59.459 34.615 0.00 0.00 0.00 2.90
341 343 7.182060 AGGAATTGTACCAAGGACAAATGTAT 58.818 34.615 0.00 0.00 40.07 2.29
390 418 4.523083 CCCCCGAAGATAAGAACAAATCA 58.477 43.478 0.00 0.00 0.00 2.57
414 450 9.154632 TCAATAAGAAGGTTCTATACTATGCCA 57.845 33.333 0.00 0.00 36.28 4.92
417 453 7.439108 AAGAAGGTTCTATACTATGCCACTT 57.561 36.000 0.00 0.00 36.28 3.16
418 454 7.439108 AGAAGGTTCTATACTATGCCACTTT 57.561 36.000 0.00 0.00 35.34 2.66
419 455 7.862675 AGAAGGTTCTATACTATGCCACTTTT 58.137 34.615 0.00 0.00 35.34 2.27
420 456 8.329502 AGAAGGTTCTATACTATGCCACTTTTT 58.670 33.333 0.00 0.00 35.34 1.94
454 490 0.842030 AACTGCCACCTCATCTCCCA 60.842 55.000 0.00 0.00 0.00 4.37
598 635 5.050702 AGACGCGAAAAAGAAGAAGAAGAAG 60.051 40.000 15.93 0.00 0.00 2.85
599 636 4.809426 ACGCGAAAAAGAAGAAGAAGAAGA 59.191 37.500 15.93 0.00 0.00 2.87
600 637 5.293569 ACGCGAAAAAGAAGAAGAAGAAGAA 59.706 36.000 15.93 0.00 0.00 2.52
601 638 6.183360 ACGCGAAAAAGAAGAAGAAGAAGAAA 60.183 34.615 15.93 0.00 0.00 2.52
602 639 6.355666 CGCGAAAAAGAAGAAGAAGAAGAAAG 59.644 38.462 0.00 0.00 0.00 2.62
603 640 7.410485 GCGAAAAAGAAGAAGAAGAAGAAAGA 58.590 34.615 0.00 0.00 0.00 2.52
632 669 2.284151 GTCTCCTCTCCCCTCCCC 59.716 72.222 0.00 0.00 0.00 4.81
633 670 2.133201 TCTCCTCTCCCCTCCCCT 59.867 66.667 0.00 0.00 0.00 4.79
634 671 2.015726 TCTCCTCTCCCCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
635 672 3.036959 TCCTCTCCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
636 673 4.179599 CCTCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
637 674 4.179599 CTCTCCCCTCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
638 675 4.761304 TCTCCCCTCCCCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
639 676 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
643 680 4.179599 CCTCCCCTCCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
644 681 4.548513 CTCCCCTCCCCTCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
649 686 4.787280 CTCCCCTCCCTCGTGCCT 62.787 72.222 0.00 0.00 0.00 4.75
650 687 4.332543 TCCCCTCCCTCGTGCCTT 62.333 66.667 0.00 0.00 0.00 4.35
651 688 4.101448 CCCCTCCCTCGTGCCTTG 62.101 72.222 0.00 0.00 0.00 3.61
652 689 4.101448 CCCTCCCTCGTGCCTTGG 62.101 72.222 0.00 0.00 0.00 3.61
653 690 4.785453 CCTCCCTCGTGCCTTGGC 62.785 72.222 4.43 4.43 0.00 4.52
654 691 4.785453 CTCCCTCGTGCCTTGGCC 62.785 72.222 9.35 0.00 0.00 5.36
1289 1339 1.304381 TGGCCTGGCTGTTGGAATC 60.304 57.895 19.68 0.00 0.00 2.52
1316 1368 2.028385 ACGGTCTGTGTTGGTATTCCTC 60.028 50.000 0.00 0.00 34.23 3.71
1321 1373 1.338674 TGTGTTGGTATTCCTCTGGCG 60.339 52.381 0.00 0.00 34.23 5.69
1338 1390 0.375106 GCGGCTCACAGCTTATTGTC 59.625 55.000 0.00 0.00 41.99 3.18
1339 1391 0.647410 CGGCTCACAGCTTATTGTCG 59.353 55.000 0.00 0.00 41.99 4.35
1340 1392 1.726853 GGCTCACAGCTTATTGTCGT 58.273 50.000 0.00 0.00 41.99 4.34
1360 1412 1.198867 TCGGATTTGTTGATTGTGCGG 59.801 47.619 0.00 0.00 0.00 5.69
1414 1466 2.670229 CGCTGCAAGTTCGTAGGACTAA 60.670 50.000 0.00 0.00 35.30 2.24
1450 1502 2.163412 GGTGAGTGTTTGTTGTGCTGAA 59.837 45.455 0.00 0.00 0.00 3.02
1465 1517 5.118990 TGTGCTGAAGCTAACTATTGGATC 58.881 41.667 3.61 0.00 42.66 3.36
1829 2150 4.527816 ACAATGTATGCCCTTCATGTTTGT 59.472 37.500 0.00 0.00 36.63 2.83
1954 2278 4.381292 GCCTCAAAGAAATTCATGACTGGG 60.381 45.833 0.00 0.00 0.00 4.45
1978 2303 9.091220 GGGTGGTAAGTCATTCTACTAAGATAT 57.909 37.037 0.00 0.00 0.00 1.63
2051 2377 3.248266 GCCAGCATTCAATTTCAGTGAC 58.752 45.455 0.00 0.00 0.00 3.67
2054 2380 5.634896 CCAGCATTCAATTTCAGTGACTAC 58.365 41.667 0.00 0.00 0.00 2.73
2060 2386 6.721571 TTCAATTTCAGTGACTACCGATTC 57.278 37.500 0.00 0.00 0.00 2.52
2061 2387 5.789521 TCAATTTCAGTGACTACCGATTCA 58.210 37.500 0.00 0.00 0.00 2.57
2141 2467 4.440802 GGACAGTGTCTCAGTGTGATATCC 60.441 50.000 22.18 5.97 46.41 2.59
2263 2643 4.671831 TCAACAAATAGAATGGGAGGCAA 58.328 39.130 0.00 0.00 0.00 4.52
2331 2713 3.945285 CGTAAGCCACAATTAACAGGGAT 59.055 43.478 0.00 0.00 0.00 3.85
2397 2782 4.599047 ATGCTCCTCTGCTGTTATCTAC 57.401 45.455 0.00 0.00 0.00 2.59
2398 2783 3.636679 TGCTCCTCTGCTGTTATCTACT 58.363 45.455 0.00 0.00 0.00 2.57
2399 2784 3.634448 TGCTCCTCTGCTGTTATCTACTC 59.366 47.826 0.00 0.00 0.00 2.59
2400 2785 3.005367 GCTCCTCTGCTGTTATCTACTCC 59.995 52.174 0.00 0.00 0.00 3.85
2401 2786 3.567397 TCCTCTGCTGTTATCTACTCCC 58.433 50.000 0.00 0.00 0.00 4.30
2402 2787 3.205507 TCCTCTGCTGTTATCTACTCCCT 59.794 47.826 0.00 0.00 0.00 4.20
2403 2788 3.572255 CCTCTGCTGTTATCTACTCCCTC 59.428 52.174 0.00 0.00 0.00 4.30
2404 2789 3.567397 TCTGCTGTTATCTACTCCCTCC 58.433 50.000 0.00 0.00 0.00 4.30
2405 2790 2.294791 CTGCTGTTATCTACTCCCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
2406 2791 2.308690 GCTGTTATCTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
2407 2792 2.694109 GCTGTTATCTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
2408 2793 3.243468 GCTGTTATCTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
2409 2794 2.947652 TGTTATCTACTCCCTCCGTTCG 59.052 50.000 0.00 0.00 0.00 3.95
2410 2795 2.267174 TATCTACTCCCTCCGTTCGG 57.733 55.000 4.74 4.74 0.00 4.30
2411 2796 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
2412 2797 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
2413 2798 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
2414 2799 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2415 2800 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2416 2801 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2417 2802 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2418 2803 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2419 2804 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2420 2805 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2421 2806 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2422 2807 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2423 2808 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2424 2809 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2425 2810 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2426 2811 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2427 2812 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2428 2813 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2429 2814 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2430 2815 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2431 2816 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2432 2817 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2433 2818 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2434 2819 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2435 2820 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2436 2821 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2437 2822 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2438 2823 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2439 2824 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2440 2825 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2441 2826 6.101650 TGTCGCAGAAATGGATGTATCTAT 57.898 37.500 0.00 0.00 39.69 1.98
2442 2827 7.227049 TGTCGCAGAAATGGATGTATCTATA 57.773 36.000 0.00 0.00 39.69 1.31
2443 2828 7.840931 TGTCGCAGAAATGGATGTATCTATAT 58.159 34.615 0.00 0.00 39.69 0.86
2444 2829 7.761249 TGTCGCAGAAATGGATGTATCTATATG 59.239 37.037 0.00 0.00 39.69 1.78
2445 2830 7.761704 GTCGCAGAAATGGATGTATCTATATGT 59.238 37.037 0.00 0.00 39.69 2.29
2446 2831 8.966868 TCGCAGAAATGGATGTATCTATATGTA 58.033 33.333 0.00 0.00 0.00 2.29
2447 2832 9.755804 CGCAGAAATGGATGTATCTATATGTAT 57.244 33.333 0.00 0.00 0.00 2.29
2474 2859 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
2475 2860 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
2476 2861 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
2477 2862 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
2478 2863 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
2479 2864 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
2480 2865 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
2481 2866 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
2482 2867 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
2483 2868 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
2484 2869 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
2485 2870 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
2486 2871 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
2487 2872 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
2488 2873 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
2489 2874 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
2490 2875 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
2491 2876 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2492 2877 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2493 2878 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2494 2879 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2495 2880 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2496 2881 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2497 2882 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2498 2883 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2499 2884 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2500 2885 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2501 2886 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2505 2890 0.893447 CCGAACGGAGGGAGTAGTTT 59.107 55.000 7.53 0.00 37.50 2.66
2524 2909 3.500448 TTGGTTGTCCAGCAAGACATA 57.500 42.857 9.35 0.00 45.80 2.29
2605 2990 8.507524 AGAAATACTGGCTGAACCTAATAAAC 57.492 34.615 0.00 0.00 40.22 2.01
2634 3019 3.624861 CGAAGTTGCATCCTTATTCTGCT 59.375 43.478 0.00 0.00 36.84 4.24
2637 3022 4.122776 AGTTGCATCCTTATTCTGCTACG 58.877 43.478 0.00 0.00 43.32 3.51
2691 3076 2.909006 TGTCCTGCTTCTGGAGATTCTT 59.091 45.455 0.00 0.00 32.29 2.52
2694 3079 3.584406 TCCTGCTTCTGGAGATTCTTCAA 59.416 43.478 0.00 0.00 33.10 2.69
2776 3161 5.560760 CGCACACACTGATACTGTTTTGATT 60.561 40.000 0.00 0.00 0.00 2.57
2938 3323 9.997482 TGTAAATTATTCCGCTTCTTTTGATAC 57.003 29.630 0.00 0.00 0.00 2.24
2962 3355 6.015940 ACTGAATTTCTTGGATGGTTTGTCTC 60.016 38.462 0.00 0.00 0.00 3.36
2964 3357 6.550854 TGAATTTCTTGGATGGTTTGTCTCTT 59.449 34.615 0.00 0.00 0.00 2.85
2968 3361 4.943705 TCTTGGATGGTTTGTCTCTTATGC 59.056 41.667 0.00 0.00 0.00 3.14
3008 3401 1.734465 GACTGGCTTCATCCTGTTTCG 59.266 52.381 0.00 0.00 38.23 3.46
3084 3481 6.154534 TGGTGTTGTCTATTATACAGTCTGCT 59.845 38.462 0.00 0.00 0.00 4.24
3085 3482 7.042335 GGTGTTGTCTATTATACAGTCTGCTT 58.958 38.462 0.00 0.00 0.00 3.91
3086 3483 7.549488 GGTGTTGTCTATTATACAGTCTGCTTT 59.451 37.037 0.00 0.00 0.00 3.51
3087 3484 9.582431 GTGTTGTCTATTATACAGTCTGCTTTA 57.418 33.333 0.00 0.00 0.00 1.85
3216 3620 6.089249 AGAAACTTGACATGAAATTGGGTC 57.911 37.500 0.00 0.00 0.00 4.46
3321 3726 1.455822 TTGAATCCCCAGGTCTTGGT 58.544 50.000 0.00 0.00 46.25 3.67
3414 3819 3.376636 TGGCATTGGTGAATGGATCATT 58.623 40.909 0.00 0.00 40.97 2.57
3453 3858 3.005554 GCGCCATATCTACAATGCATCT 58.994 45.455 0.00 0.00 0.00 2.90
3468 3873 4.637483 TGCATCTAAGCAAATTAGTGCC 57.363 40.909 14.09 4.14 46.14 5.01
3500 3905 5.123186 CGCCAGGTAAATTCACAGTTATCAA 59.877 40.000 0.00 0.00 0.00 2.57
3529 3934 2.498807 TCTGCAGAGTAGCTTATGCG 57.501 50.000 13.74 0.00 45.42 4.73
3534 3939 3.123804 GCAGAGTAGCTTATGCGCTAAA 58.876 45.455 9.73 1.38 43.51 1.85
3535 3940 3.743396 GCAGAGTAGCTTATGCGCTAAAT 59.257 43.478 9.73 0.00 43.51 1.40
3600 4005 2.408050 GCAGTCATCATACGACATCCC 58.592 52.381 0.00 0.00 35.77 3.85
3633 4038 7.038799 GGGGAATATGCATTTGGATTCATTACT 60.039 37.037 17.51 0.00 31.25 2.24
3661 4076 1.004394 TCTCGCTCCAGGTCTTCACTA 59.996 52.381 0.00 0.00 0.00 2.74
3668 4083 5.241949 CGCTCCAGGTCTTCACTATTATACT 59.758 44.000 0.00 0.00 0.00 2.12
3689 4116 5.128919 ACTGAGTTCCCAATGATGATTAGC 58.871 41.667 0.00 0.00 0.00 3.09
3695 4122 6.543831 AGTTCCCAATGATGATTAGCTTACAC 59.456 38.462 0.00 0.00 0.00 2.90
3696 4123 5.376625 TCCCAATGATGATTAGCTTACACC 58.623 41.667 0.00 0.00 0.00 4.16
3740 4167 8.956533 TTTATGCTCAGTATGCAGTTATGTTA 57.043 30.769 0.00 0.00 44.04 2.41
3741 4168 9.559732 TTTATGCTCAGTATGCAGTTATGTTAT 57.440 29.630 0.00 0.00 44.04 1.89
3743 4170 5.991606 TGCTCAGTATGCAGTTATGTTATCC 59.008 40.000 0.00 0.00 35.31 2.59
3747 4174 6.986231 TCAGTATGCAGTTATGTTATCCTGTG 59.014 38.462 0.00 0.00 34.76 3.66
3751 4178 5.049828 TGCAGTTATGTTATCCTGTGATCG 58.950 41.667 0.00 0.00 32.18 3.69
3752 4179 4.449068 GCAGTTATGTTATCCTGTGATCGG 59.551 45.833 0.00 0.00 32.18 4.18
3753 4180 5.601662 CAGTTATGTTATCCTGTGATCGGT 58.398 41.667 0.00 0.00 32.18 4.69
3764 4200 3.370527 CCTGTGATCGGTATGAACCCTTT 60.371 47.826 0.00 0.00 43.54 3.11
3807 4243 9.665719 AATTCAGTTTTACCACAAAATTTGACT 57.334 25.926 13.19 0.59 0.00 3.41
3910 4346 9.512435 CATTCTATTGTTTGCTCTGATTTAAGG 57.488 33.333 0.00 0.00 0.00 2.69
4115 4552 4.721132 ACTCCTAAACTCTATCCTCTCGG 58.279 47.826 0.00 0.00 0.00 4.63
4117 4554 4.462133 TCCTAAACTCTATCCTCTCGGTG 58.538 47.826 0.00 0.00 0.00 4.94
4334 4777 4.970611 CCTGTTCGTCGATATCAAGTGTAG 59.029 45.833 3.12 0.00 0.00 2.74
4350 4793 5.189659 AGTGTAGAACTCTCAACACAGAC 57.810 43.478 12.89 0.00 43.65 3.51
4502 4950 4.202151 ACAATTGGCTTGGACTTTGTCTTC 60.202 41.667 10.83 0.00 39.30 2.87
4619 5068 3.056179 TCGGCATCAACAATGTCTGACTA 60.056 43.478 9.51 0.00 37.87 2.59
4772 5221 4.836125 TTGAAAGATCTGCTGGAACAAC 57.164 40.909 0.00 0.00 38.70 3.32
4794 5243 8.239314 ACAACAGTGATATGATAAACTTTGCAG 58.761 33.333 0.00 0.00 0.00 4.41
4827 5278 8.031277 GGAAAAATTAGCTGATGTGATCAACTT 58.969 33.333 0.00 0.00 39.11 2.66
4844 5297 3.222173 ACTTTGCACAATACTGGTGGA 57.778 42.857 0.00 0.00 36.76 4.02
4863 5316 3.055094 TGGAGACCAACCTAAGCATTCTC 60.055 47.826 0.00 0.00 0.00 2.87
4864 5317 3.055094 GGAGACCAACCTAAGCATTCTCA 60.055 47.826 0.00 0.00 31.48 3.27
4865 5318 4.384647 GGAGACCAACCTAAGCATTCTCAT 60.385 45.833 0.00 0.00 31.48 2.90
4866 5319 4.775236 AGACCAACCTAAGCATTCTCATC 58.225 43.478 0.00 0.00 0.00 2.92
4867 5320 4.472833 AGACCAACCTAAGCATTCTCATCT 59.527 41.667 0.00 0.00 0.00 2.90
4868 5321 4.775236 ACCAACCTAAGCATTCTCATCTC 58.225 43.478 0.00 0.00 0.00 2.75
4869 5322 4.133078 CCAACCTAAGCATTCTCATCTCC 58.867 47.826 0.00 0.00 0.00 3.71
4870 5323 4.384537 CCAACCTAAGCATTCTCATCTCCA 60.385 45.833 0.00 0.00 0.00 3.86
4871 5324 4.414337 ACCTAAGCATTCTCATCTCCAC 57.586 45.455 0.00 0.00 0.00 4.02
4872 5325 3.135530 ACCTAAGCATTCTCATCTCCACC 59.864 47.826 0.00 0.00 0.00 4.61
4873 5326 3.135348 CCTAAGCATTCTCATCTCCACCA 59.865 47.826 0.00 0.00 0.00 4.17
4874 5327 3.278668 AAGCATTCTCATCTCCACCAG 57.721 47.619 0.00 0.00 0.00 4.00
4875 5328 1.134159 AGCATTCTCATCTCCACCAGC 60.134 52.381 0.00 0.00 0.00 4.85
4876 5329 1.964552 CATTCTCATCTCCACCAGCC 58.035 55.000 0.00 0.00 0.00 4.85
4877 5330 1.489649 CATTCTCATCTCCACCAGCCT 59.510 52.381 0.00 0.00 0.00 4.58
4878 5331 2.550277 TTCTCATCTCCACCAGCCTA 57.450 50.000 0.00 0.00 0.00 3.93
4879 5332 2.550277 TCTCATCTCCACCAGCCTAA 57.450 50.000 0.00 0.00 0.00 2.69
4880 5333 2.392662 TCTCATCTCCACCAGCCTAAG 58.607 52.381 0.00 0.00 0.00 2.18
4881 5334 0.833287 TCATCTCCACCAGCCTAAGC 59.167 55.000 0.00 0.00 40.32 3.09
4882 5335 0.543277 CATCTCCACCAGCCTAAGCA 59.457 55.000 0.00 0.00 43.56 3.91
4883 5336 1.142465 CATCTCCACCAGCCTAAGCAT 59.858 52.381 0.00 0.00 43.56 3.79
4884 5337 1.289160 TCTCCACCAGCCTAAGCATT 58.711 50.000 0.00 0.00 43.56 3.56
4885 5338 1.210478 TCTCCACCAGCCTAAGCATTC 59.790 52.381 0.00 0.00 43.56 2.67
4886 5339 1.211457 CTCCACCAGCCTAAGCATTCT 59.789 52.381 0.00 0.00 43.56 2.40
4933 5440 3.986128 ACATTTCTATCGTTTTCGTGCG 58.014 40.909 0.00 0.00 44.46 5.34
4940 5447 0.806884 TCGTTTTCGTGCGTGGTTCT 60.807 50.000 0.00 0.00 44.46 3.01
4941 5448 0.382636 CGTTTTCGTGCGTGGTTCTC 60.383 55.000 0.00 0.00 38.65 2.87
4981 5497 0.108424 GACCTGCTCCTGCTACACAG 60.108 60.000 0.00 0.00 46.77 3.66
5004 5547 2.240667 AGCATGGTAAGATCTTGGCACT 59.759 45.455 18.47 5.15 0.00 4.40
5015 5558 2.516906 TCTTGGCACTGCATTCATCAA 58.483 42.857 2.82 0.00 0.00 2.57
5022 5566 3.181503 GCACTGCATTCATCAATCGTTCT 60.182 43.478 0.00 0.00 0.00 3.01
5059 5605 1.308069 GGTTGGCGTGTGCATGATCT 61.308 55.000 0.00 0.00 45.35 2.75
5066 5612 1.466866 CGTGTGCATGATCTTGGCTTG 60.467 52.381 10.35 0.00 0.00 4.01
5069 5615 2.089980 GTGCATGATCTTGGCTTGACT 58.910 47.619 10.35 0.00 0.00 3.41
5078 5624 3.728845 TCTTGGCTTGACTACTGTTCAC 58.271 45.455 0.00 0.00 0.00 3.18
5079 5625 2.148916 TGGCTTGACTACTGTTCACG 57.851 50.000 0.00 0.00 0.00 4.35
5080 5626 0.790814 GGCTTGACTACTGTTCACGC 59.209 55.000 3.20 3.20 0.00 5.34
5106 5655 2.357517 CTTGCCGCCAGAGACGTT 60.358 61.111 0.00 0.00 0.00 3.99
5116 5665 1.541233 CCAGAGACGTTGCTCAAACCT 60.541 52.381 6.99 0.00 37.37 3.50
5121 5670 2.250939 CGTTGCTCAAACCTGCGGA 61.251 57.895 0.00 0.00 35.13 5.54
5160 5957 0.323999 TGCCTGGTCGCTAGGAACTA 60.324 55.000 12.23 0.00 41.75 2.24
5176 5973 3.270877 GAACTAGTTCCGCCATTGATGT 58.729 45.455 22.74 0.00 33.64 3.06
5181 5978 1.031571 TTCCGCCATTGATGTCAGCC 61.032 55.000 0.00 0.00 0.00 4.85
5196 5993 2.352960 GTCAGCCCTCAAATCTTTAGCG 59.647 50.000 0.00 0.00 0.00 4.26
5207 6004 8.879759 CCTCAAATCTTTAGCGTATGTAAAGAA 58.120 33.333 16.64 6.48 45.25 2.52
5236 6033 4.477780 GCTATCCTGATGAACTAGTACGC 58.522 47.826 0.00 0.00 0.00 4.42
5239 6036 3.534554 TCCTGATGAACTAGTACGCGTA 58.465 45.455 16.41 16.41 0.00 4.42
5240 6037 3.558829 TCCTGATGAACTAGTACGCGTAG 59.441 47.826 21.25 12.98 0.00 3.51
5241 6038 3.558829 CCTGATGAACTAGTACGCGTAGA 59.441 47.826 21.25 9.97 0.00 2.59
5242 6039 4.318903 CCTGATGAACTAGTACGCGTAGAG 60.319 50.000 21.25 21.09 0.00 2.43
5243 6040 4.186926 TGATGAACTAGTACGCGTAGAGT 58.813 43.478 21.25 21.75 46.42 3.24
5244 6041 5.351458 TGATGAACTAGTACGCGTAGAGTA 58.649 41.667 25.84 16.15 39.99 2.59
5245 6042 5.987953 TGATGAACTAGTACGCGTAGAGTAT 59.012 40.000 25.84 19.11 45.81 2.12
5246 6043 7.147976 TGATGAACTAGTACGCGTAGAGTATA 58.852 38.462 25.84 19.66 45.81 1.47
5248 6045 9.295214 GATGAACTAGTACGCGTAGAGTATATA 57.705 37.037 25.84 16.12 45.81 0.86
5249 6046 8.454293 TGAACTAGTACGCGTAGAGTATATAC 57.546 38.462 25.84 13.14 45.81 1.47
5251 6048 8.682128 AACTAGTACGCGTAGAGTATATACTC 57.318 38.462 28.41 28.41 45.81 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.285224 TGACCGATAAGTTTGAAGAAGTTCA 58.715 36.000 5.50 0.00 41.13 3.18
2 3 6.780706 TGACCGATAAGTTTGAAGAAGTTC 57.219 37.500 0.00 0.00 0.00 3.01
3 4 6.540914 TGTTGACCGATAAGTTTGAAGAAGTT 59.459 34.615 0.00 0.00 0.00 2.66
5 6 6.018262 TGTGTTGACCGATAAGTTTGAAGAAG 60.018 38.462 0.00 0.00 0.00 2.85
6 7 5.818336 TGTGTTGACCGATAAGTTTGAAGAA 59.182 36.000 0.00 0.00 0.00 2.52
7 8 5.361427 TGTGTTGACCGATAAGTTTGAAGA 58.639 37.500 0.00 0.00 0.00 2.87
8 9 5.666969 TGTGTTGACCGATAAGTTTGAAG 57.333 39.130 0.00 0.00 0.00 3.02
9 10 5.760743 TCATGTGTTGACCGATAAGTTTGAA 59.239 36.000 0.00 0.00 0.00 2.69
10 11 5.301555 TCATGTGTTGACCGATAAGTTTGA 58.698 37.500 0.00 0.00 0.00 2.69
11 12 5.408299 TCTCATGTGTTGACCGATAAGTTTG 59.592 40.000 0.00 0.00 0.00 2.93
12 13 5.547465 TCTCATGTGTTGACCGATAAGTTT 58.453 37.500 0.00 0.00 0.00 2.66
13 14 5.147330 TCTCATGTGTTGACCGATAAGTT 57.853 39.130 0.00 0.00 0.00 2.66
14 15 4.801330 TCTCATGTGTTGACCGATAAGT 57.199 40.909 0.00 0.00 0.00 2.24
15 16 5.595885 AGATCTCATGTGTTGACCGATAAG 58.404 41.667 0.00 0.00 0.00 1.73
16 17 5.451937 GGAGATCTCATGTGTTGACCGATAA 60.452 44.000 23.85 0.00 0.00 1.75
17 18 4.038042 GGAGATCTCATGTGTTGACCGATA 59.962 45.833 23.85 0.00 0.00 2.92
18 19 3.181471 GGAGATCTCATGTGTTGACCGAT 60.181 47.826 23.85 0.00 0.00 4.18
19 20 2.166459 GGAGATCTCATGTGTTGACCGA 59.834 50.000 23.85 0.00 0.00 4.69
20 21 2.167281 AGGAGATCTCATGTGTTGACCG 59.833 50.000 23.85 0.00 0.00 4.79
21 22 3.196469 TGAGGAGATCTCATGTGTTGACC 59.804 47.826 23.85 3.42 46.71 4.02
22 23 4.462508 TGAGGAGATCTCATGTGTTGAC 57.537 45.455 23.85 4.19 46.71 3.18
55 56 5.933617 AGATTTAATGAGCATGAGTGGCTA 58.066 37.500 0.00 0.00 42.78 3.93
56 57 4.789807 AGATTTAATGAGCATGAGTGGCT 58.210 39.130 0.00 0.00 46.07 4.75
59 60 9.491675 AGATCTAAGATTTAATGAGCATGAGTG 57.508 33.333 0.00 0.00 0.00 3.51
102 104 4.811557 CGGTCCTTTCATCCTCTTTATCAC 59.188 45.833 0.00 0.00 0.00 3.06
113 115 2.487762 TGCAATTCACGGTCCTTTCATC 59.512 45.455 0.00 0.00 0.00 2.92
137 139 2.418976 GTGGGGTTGACGATTTTCTAGC 59.581 50.000 0.00 0.00 0.00 3.42
147 149 3.246112 TGGGAGGTGGGGTTGACG 61.246 66.667 0.00 0.00 0.00 4.35
153 155 2.204865 TATTTGCGTGGGAGGTGGGG 62.205 60.000 0.00 0.00 0.00 4.96
156 158 2.643551 AGAATATTTGCGTGGGAGGTG 58.356 47.619 0.00 0.00 0.00 4.00
157 159 3.054361 AGAAGAATATTTGCGTGGGAGGT 60.054 43.478 0.00 0.00 0.00 3.85
163 165 8.292448 AGCCATAATAAGAAGAATATTTGCGTG 58.708 33.333 0.00 0.00 0.00 5.34
164 166 8.396272 AGCCATAATAAGAAGAATATTTGCGT 57.604 30.769 0.00 0.00 0.00 5.24
206 208 6.389622 TTCTCGACGATGTTCACTAATTTG 57.610 37.500 0.00 0.00 0.00 2.32
220 222 0.037326 AAGCAAGGCATTCTCGACGA 60.037 50.000 0.00 0.00 0.00 4.20
227 229 0.455633 CGAGTGCAAGCAAGGCATTC 60.456 55.000 0.00 8.89 44.11 2.67
250 252 7.395190 TGAGAAATGTTGACATATTTGGAGG 57.605 36.000 0.00 0.00 35.10 4.30
289 291 7.546778 TTCTTTTTGCCCAAAATGTTCTTAC 57.453 32.000 14.87 0.00 39.69 2.34
390 418 9.160412 AGTGGCATAGTATAGAACCTTCTTATT 57.840 33.333 0.00 0.00 38.70 1.40
418 454 4.526650 GGCAGTTTGGATTCTCCCTAAAAA 59.473 41.667 0.00 0.00 35.03 1.94
419 455 4.086457 GGCAGTTTGGATTCTCCCTAAAA 58.914 43.478 0.00 0.00 35.03 1.52
420 456 3.075283 TGGCAGTTTGGATTCTCCCTAAA 59.925 43.478 0.00 0.00 35.03 1.85
421 457 2.647299 TGGCAGTTTGGATTCTCCCTAA 59.353 45.455 0.00 0.00 35.03 2.69
422 458 2.026262 GTGGCAGTTTGGATTCTCCCTA 60.026 50.000 0.00 0.00 35.03 3.53
610 647 0.973496 GAGGGGAGAGGAGACGCTTT 60.973 60.000 0.00 0.00 42.18 3.51
611 648 1.380650 GAGGGGAGAGGAGACGCTT 60.381 63.158 0.00 0.00 42.18 4.68
632 669 4.787280 AGGCACGAGGGAGGGGAG 62.787 72.222 0.00 0.00 0.00 4.30
633 670 4.332543 AAGGCACGAGGGAGGGGA 62.333 66.667 0.00 0.00 0.00 4.81
634 671 4.101448 CAAGGCACGAGGGAGGGG 62.101 72.222 0.00 0.00 0.00 4.79
635 672 4.101448 CCAAGGCACGAGGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
636 673 4.785453 GCCAAGGCACGAGGGAGG 62.785 72.222 6.14 0.00 41.49 4.30
637 674 4.785453 GGCCAAGGCACGAGGGAG 62.785 72.222 13.87 0.00 44.11 4.30
644 681 4.662961 GCAAACGGGCCAAGGCAC 62.663 66.667 13.87 8.60 44.11 5.01
1206 1256 1.005394 GAACGAGGCGTGAAGGGAA 60.005 57.895 0.00 0.00 39.99 3.97
1272 1322 1.304381 TGATTCCAACAGCCAGGCC 60.304 57.895 8.22 0.00 0.00 5.19
1316 1368 0.745845 AATAAGCTGTGAGCCGCCAG 60.746 55.000 0.00 0.00 43.77 4.85
1321 1373 1.661112 GACGACAATAAGCTGTGAGCC 59.339 52.381 0.00 0.00 43.77 4.70
1338 1390 2.241722 GCACAATCAACAAATCCGACG 58.758 47.619 0.00 0.00 0.00 5.12
1339 1391 2.241722 CGCACAATCAACAAATCCGAC 58.758 47.619 0.00 0.00 0.00 4.79
1340 1392 1.198867 CCGCACAATCAACAAATCCGA 59.801 47.619 0.00 0.00 0.00 4.55
1360 1412 6.541111 AACAGTCATTTCGAACCTACTTTC 57.459 37.500 0.00 0.00 0.00 2.62
1414 1466 0.544357 TCACCAAGGGTCGACATCCT 60.544 55.000 18.91 12.76 31.02 3.24
1450 1502 3.961408 ACCACTCGATCCAATAGTTAGCT 59.039 43.478 0.00 0.00 0.00 3.32
1465 1517 3.073678 TCATCACCAATTTGACCACTCG 58.926 45.455 0.00 0.00 0.00 4.18
1607 1925 2.734755 TGCCTTCTGTATGGGGATTG 57.265 50.000 0.00 0.00 0.00 2.67
1829 2150 6.003950 ACCTCAGAAATACAAGCAAAGCTAA 58.996 36.000 0.00 0.00 38.25 3.09
1978 2303 6.723298 ACATGACTTTTGTTTTGTGGGATA 57.277 33.333 0.00 0.00 0.00 2.59
1990 2316 5.768317 ACCATCCGTTTAACATGACTTTTG 58.232 37.500 0.00 0.00 0.00 2.44
1991 2317 6.938030 TCTACCATCCGTTTAACATGACTTTT 59.062 34.615 0.00 0.00 0.00 2.27
2051 2377 8.378172 TGCCTAAATTATTTCTGAATCGGTAG 57.622 34.615 0.00 0.00 0.00 3.18
2054 2380 7.496529 TCTGCCTAAATTATTTCTGAATCGG 57.503 36.000 0.00 0.00 0.00 4.18
2141 2467 3.772025 AGATAAGACCCAGAACCAGAGTG 59.228 47.826 0.00 0.00 0.00 3.51
2248 2628 2.175715 GGGTTCTTGCCTCCCATTCTAT 59.824 50.000 0.00 0.00 40.79 1.98
2263 2643 2.334006 ACACATCTCCTCTGGGTTCT 57.666 50.000 0.00 0.00 0.00 3.01
2397 2782 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2398 2783 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2399 2784 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2400 2785 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2401 2786 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2402 2787 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2403 2788 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2404 2789 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2405 2790 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
2406 2791 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
2407 2792 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2408 2793 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2409 2794 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2410 2795 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2411 2796 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2412 2797 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2413 2798 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2414 2799 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2415 2800 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2416 2801 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2417 2802 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2418 2803 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2419 2804 7.761704 ACATATAGATACATCCATTTCTGCGAC 59.238 37.037 0.00 0.00 0.00 5.19
2420 2805 7.840931 ACATATAGATACATCCATTTCTGCGA 58.159 34.615 0.00 0.00 0.00 5.10
2421 2806 9.755804 ATACATATAGATACATCCATTTCTGCG 57.244 33.333 0.00 0.00 0.00 5.18
2448 2833 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
2449 2834 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
2450 2835 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
2451 2836 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
2452 2837 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
2453 2838 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
2454 2839 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
2455 2840 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
2456 2841 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
2457 2842 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
2458 2843 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
2459 2844 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
2460 2845 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
2461 2846 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
2462 2847 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
2463 2848 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
2464 2849 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
2465 2850 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
2466 2851 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
2467 2852 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
2468 2853 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
2469 2854 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
2470 2855 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2471 2856 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2472 2857 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2473 2858 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2474 2859 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2475 2860 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2476 2861 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2477 2862 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2478 2863 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2479 2864 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2480 2865 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2481 2866 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2482 2867 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2483 2868 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2484 2869 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2485 2870 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2486 2871 0.893447 AAACTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
2487 2872 1.403780 CCAAACTACTCCCTCCGTTCG 60.404 57.143 0.00 0.00 0.00 3.95
2488 2873 1.622312 ACCAAACTACTCCCTCCGTTC 59.378 52.381 0.00 0.00 0.00 3.95
2489 2874 1.725803 ACCAAACTACTCCCTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
2490 2875 1.346722 CAACCAAACTACTCCCTCCGT 59.653 52.381 0.00 0.00 0.00 4.69
2491 2876 1.346722 ACAACCAAACTACTCCCTCCG 59.653 52.381 0.00 0.00 0.00 4.63
2492 2877 2.290134 GGACAACCAAACTACTCCCTCC 60.290 54.545 0.00 0.00 35.97 4.30
2493 2878 2.370849 TGGACAACCAAACTACTCCCTC 59.629 50.000 0.00 0.00 43.91 4.30
2494 2879 2.372172 CTGGACAACCAAACTACTCCCT 59.628 50.000 0.00 0.00 46.32 4.20
2495 2880 2.779506 CTGGACAACCAAACTACTCCC 58.220 52.381 0.00 0.00 46.32 4.30
2496 2881 2.152016 GCTGGACAACCAAACTACTCC 58.848 52.381 0.00 0.00 46.32 3.85
2497 2882 2.846193 TGCTGGACAACCAAACTACTC 58.154 47.619 0.00 0.00 46.32 2.59
2498 2883 3.118038 TCTTGCTGGACAACCAAACTACT 60.118 43.478 0.00 0.00 46.32 2.57
2499 2884 3.003378 GTCTTGCTGGACAACCAAACTAC 59.997 47.826 5.09 0.00 46.32 2.73
2500 2885 3.211045 GTCTTGCTGGACAACCAAACTA 58.789 45.455 5.09 0.00 46.32 2.24
2501 2886 2.024414 GTCTTGCTGGACAACCAAACT 58.976 47.619 5.09 0.00 46.32 2.66
2524 2909 6.332630 CAGACTTCACAAAAAGGAACAACAT 58.667 36.000 0.00 0.00 0.00 2.71
2605 2990 3.185246 AGGATGCAACTTCGAGTATGG 57.815 47.619 0.00 0.00 0.00 2.74
2634 3019 3.517602 GTGTGCATATTCACTGGTCGTA 58.482 45.455 7.03 0.00 37.81 3.43
2637 3022 2.710377 TGGTGTGCATATTCACTGGTC 58.290 47.619 7.03 0.00 37.81 4.02
2691 3076 9.739276 ATAATTTCAGACAGGTATTGAGTTTGA 57.261 29.630 0.00 0.00 0.00 2.69
2694 3079 9.520515 AACATAATTTCAGACAGGTATTGAGTT 57.479 29.630 0.00 0.00 0.00 3.01
2938 3323 6.208204 AGAGACAAACCATCCAAGAAATTCAG 59.792 38.462 0.00 0.00 0.00 3.02
2968 3361 7.965107 GCCAGTCATTTATTGAAGAAACTACAG 59.035 37.037 0.00 0.00 35.70 2.74
3008 3401 2.876581 ACAGGATCAAACCCCAAAGTC 58.123 47.619 0.00 0.00 0.00 3.01
3084 3481 8.524487 AGGTTCCGCATACAAATTACAAATAAA 58.476 29.630 0.00 0.00 0.00 1.40
3085 3482 8.057536 AGGTTCCGCATACAAATTACAAATAA 57.942 30.769 0.00 0.00 0.00 1.40
3086 3483 7.633193 AGGTTCCGCATACAAATTACAAATA 57.367 32.000 0.00 0.00 0.00 1.40
3087 3484 6.524101 AGGTTCCGCATACAAATTACAAAT 57.476 33.333 0.00 0.00 0.00 2.32
3088 3485 5.968528 AGGTTCCGCATACAAATTACAAA 57.031 34.783 0.00 0.00 0.00 2.83
3089 3486 7.450124 TTTAGGTTCCGCATACAAATTACAA 57.550 32.000 0.00 0.00 0.00 2.41
3090 3487 7.450124 TTTTAGGTTCCGCATACAAATTACA 57.550 32.000 0.00 0.00 0.00 2.41
3091 3488 8.024865 AGTTTTTAGGTTCCGCATACAAATTAC 58.975 33.333 0.00 0.00 0.00 1.89
3158 3556 9.102757 GCAGACATTTAAGAATCTAATGACTCA 57.897 33.333 11.49 0.00 33.97 3.41
3160 3558 9.453572 TTGCAGACATTTAAGAATCTAATGACT 57.546 29.630 11.49 8.30 35.65 3.41
3179 3577 5.911838 GTCAAGTTTCTCAGATTTTGCAGAC 59.088 40.000 0.00 0.00 0.00 3.51
3414 3819 1.875262 CACAAGTGGCATGCGCTTA 59.125 52.632 20.69 2.71 38.60 3.09
3453 3858 5.347635 CGATATAGCGGCACTAATTTGCTTA 59.652 40.000 1.57 0.00 42.56 3.09
3468 3873 4.091509 GTGAATTTACCTGGCGATATAGCG 59.908 45.833 5.91 5.91 38.18 4.26
3500 3905 6.669125 AGCTACTCTGCAGATTGAATATCT 57.331 37.500 18.63 4.00 34.99 1.98
3600 4005 4.321899 CCAAATGCATATTCCCCAATACGG 60.322 45.833 0.00 0.00 0.00 4.02
3633 4038 0.820226 CCTGGAGCGAGACTGATGAA 59.180 55.000 0.00 0.00 0.00 2.57
3668 4083 5.378230 AGCTAATCATCATTGGGAACTCA 57.622 39.130 0.00 0.00 0.00 3.41
3716 4143 9.208022 GATAACATAACTGCATACTGAGCATAA 57.792 33.333 0.00 0.00 41.82 1.90
3740 4167 2.368875 GGGTTCATACCGATCACAGGAT 59.631 50.000 0.00 0.00 46.04 3.24
3741 4168 1.760613 GGGTTCATACCGATCACAGGA 59.239 52.381 0.00 0.00 46.04 3.86
3743 4170 3.543680 AAGGGTTCATACCGATCACAG 57.456 47.619 0.00 0.00 46.04 3.66
3764 4200 5.539574 ACTGAATTTCAACATTCCACCATGA 59.460 36.000 0.01 0.00 32.86 3.07
3771 4207 7.708752 TGTGGTAAAACTGAATTTCAACATTCC 59.291 33.333 0.01 1.08 32.86 3.01
3890 4326 8.624776 GCTATACCTTAAATCAGAGCAAACAAT 58.375 33.333 0.00 0.00 0.00 2.71
3893 4329 7.793927 AGCTATACCTTAAATCAGAGCAAAC 57.206 36.000 0.00 0.00 0.00 2.93
3910 4346 7.493971 ACACATTCAGATGAGTCAAAGCTATAC 59.506 37.037 0.00 0.00 32.59 1.47
4115 4552 4.390297 GGAGCAGATTAACAGACAAGACAC 59.610 45.833 0.00 0.00 0.00 3.67
4117 4554 4.569943 TGGAGCAGATTAACAGACAAGAC 58.430 43.478 0.00 0.00 0.00 3.01
4334 4777 2.866762 GTGTGGTCTGTGTTGAGAGTTC 59.133 50.000 0.00 0.00 0.00 3.01
4502 4950 2.111043 ATCTGGGGCGGCATTACG 59.889 61.111 12.47 0.00 0.00 3.18
4619 5068 6.378848 TGTTTTCTTTTACAGTAAGGCACCTT 59.621 34.615 7.20 7.20 39.83 3.50
4772 5221 8.121086 CAGACTGCAAAGTTTATCATATCACTG 58.879 37.037 0.00 0.00 0.00 3.66
4794 5243 5.105997 ACATCAGCTAATTTTTCCAGCAGAC 60.106 40.000 0.30 0.00 37.78 3.51
4827 5278 2.552155 GGTCTCCACCAGTATTGTGCAA 60.552 50.000 0.00 0.00 43.17 4.08
4844 5297 4.472833 AGATGAGAATGCTTAGGTTGGTCT 59.527 41.667 0.00 0.00 0.00 3.85
4853 5306 3.432749 GCTGGTGGAGATGAGAATGCTTA 60.433 47.826 0.00 0.00 0.00 3.09
4863 5316 0.543277 TGCTTAGGCTGGTGGAGATG 59.457 55.000 0.00 0.00 39.59 2.90
4864 5317 1.516110 ATGCTTAGGCTGGTGGAGAT 58.484 50.000 0.00 0.00 39.59 2.75
4865 5318 1.210478 GAATGCTTAGGCTGGTGGAGA 59.790 52.381 0.00 0.00 39.59 3.71
4866 5319 1.211457 AGAATGCTTAGGCTGGTGGAG 59.789 52.381 0.00 0.00 39.59 3.86
4867 5320 1.210478 GAGAATGCTTAGGCTGGTGGA 59.790 52.381 0.00 0.00 39.59 4.02
4868 5321 1.065199 TGAGAATGCTTAGGCTGGTGG 60.065 52.381 0.00 0.00 39.59 4.61
4869 5322 2.408271 TGAGAATGCTTAGGCTGGTG 57.592 50.000 0.00 0.00 39.59 4.17
4870 5323 3.659183 AATGAGAATGCTTAGGCTGGT 57.341 42.857 0.00 0.00 39.59 4.00
4871 5324 4.205587 AGAAATGAGAATGCTTAGGCTGG 58.794 43.478 0.00 0.00 39.59 4.85
4872 5325 4.275443 GGAGAAATGAGAATGCTTAGGCTG 59.725 45.833 0.00 0.00 39.59 4.85
4873 5326 4.080129 TGGAGAAATGAGAATGCTTAGGCT 60.080 41.667 0.00 0.00 39.59 4.58
4874 5327 4.036144 GTGGAGAAATGAGAATGCTTAGGC 59.964 45.833 0.00 0.00 39.26 3.93
4875 5328 4.272018 CGTGGAGAAATGAGAATGCTTAGG 59.728 45.833 0.00 0.00 0.00 2.69
4876 5329 4.272018 CCGTGGAGAAATGAGAATGCTTAG 59.728 45.833 0.00 0.00 0.00 2.18
4877 5330 4.081142 TCCGTGGAGAAATGAGAATGCTTA 60.081 41.667 0.00 0.00 0.00 3.09
4878 5331 3.012518 CCGTGGAGAAATGAGAATGCTT 58.987 45.455 0.00 0.00 0.00 3.91
4879 5332 2.237143 TCCGTGGAGAAATGAGAATGCT 59.763 45.455 0.00 0.00 0.00 3.79
4880 5333 2.632377 TCCGTGGAGAAATGAGAATGC 58.368 47.619 0.00 0.00 0.00 3.56
4881 5334 6.925610 TTTATCCGTGGAGAAATGAGAATG 57.074 37.500 4.65 0.00 31.47 2.67
4882 5335 8.408601 CAAATTTATCCGTGGAGAAATGAGAAT 58.591 33.333 19.14 3.87 42.80 2.40
4883 5336 7.609918 TCAAATTTATCCGTGGAGAAATGAGAA 59.390 33.333 19.14 6.08 42.80 2.87
4884 5337 7.065803 GTCAAATTTATCCGTGGAGAAATGAGA 59.934 37.037 19.14 16.51 42.80 3.27
4885 5338 7.066284 AGTCAAATTTATCCGTGGAGAAATGAG 59.934 37.037 19.14 14.92 42.80 2.90
4886 5339 6.884295 AGTCAAATTTATCCGTGGAGAAATGA 59.116 34.615 19.14 13.17 42.80 2.57
4922 5375 0.382636 GAGAACCACGCACGAAAACG 60.383 55.000 0.00 0.00 0.00 3.60
4933 5440 3.191791 GTCTAGACCAGTCAGAGAACCAC 59.808 52.174 12.13 0.00 0.00 4.16
4940 5447 5.648526 GTCAATGTAGTCTAGACCAGTCAGA 59.351 44.000 19.38 8.64 0.00 3.27
4941 5448 5.163602 GGTCAATGTAGTCTAGACCAGTCAG 60.164 48.000 19.38 6.45 46.15 3.51
4981 5497 1.336125 GCCAAGATCTTACCATGCTGC 59.664 52.381 7.86 0.00 0.00 5.25
4992 5508 2.502142 TGAATGCAGTGCCAAGATCT 57.498 45.000 13.72 0.00 0.00 2.75
5004 5547 4.023792 GCCATAGAACGATTGATGAATGCA 60.024 41.667 0.00 0.00 0.00 3.96
5015 5558 4.192317 GGTTCTGAAAGCCATAGAACGAT 58.808 43.478 0.00 0.00 46.95 3.73
5022 5566 3.737559 ACCATGGTTCTGAAAGCCATA 57.262 42.857 13.00 0.00 40.68 2.74
5048 5594 1.814394 GTCAAGCCAAGATCATGCACA 59.186 47.619 0.00 0.00 0.00 4.57
5059 5605 2.479837 CGTGAACAGTAGTCAAGCCAA 58.520 47.619 0.00 0.00 0.00 4.52
5066 5612 2.263077 CATCCTGCGTGAACAGTAGTC 58.737 52.381 0.00 0.00 35.83 2.59
5069 5615 1.939381 GCACATCCTGCGTGAACAGTA 60.939 52.381 0.00 0.00 35.72 2.74
5136 5685 4.082523 TAGCGACCAGGCACCTGC 62.083 66.667 11.39 0.00 42.35 4.85
5140 5689 1.448013 GTTCCTAGCGACCAGGCAC 60.448 63.158 0.00 0.00 32.82 5.01
5143 5692 1.765230 ACTAGTTCCTAGCGACCAGG 58.235 55.000 0.00 0.00 37.57 4.45
5160 5957 1.742761 CTGACATCAATGGCGGAACT 58.257 50.000 0.00 0.00 45.26 3.01
5162 5959 1.031571 GGCTGACATCAATGGCGGAA 61.032 55.000 8.90 0.00 45.26 4.30
5170 5967 3.726557 AGATTTGAGGGCTGACATCAA 57.273 42.857 6.48 6.48 46.99 2.57
5176 5973 2.027192 ACGCTAAAGATTTGAGGGCTGA 60.027 45.455 0.00 0.00 0.00 4.26
5181 5978 8.420374 TCTTTACATACGCTAAAGATTTGAGG 57.580 34.615 1.99 0.00 35.98 3.86
5196 5993 7.439655 CAGGATAGCCTTGTCTTCTTTACATAC 59.560 40.741 0.00 0.00 43.90 2.39
5207 6004 4.036518 AGTTCATCAGGATAGCCTTGTCT 58.963 43.478 0.00 0.00 43.90 3.41
5236 6033 8.093307 TCTGGTACAAGGAGTATATACTCTACG 58.907 40.741 32.00 23.97 45.18 3.51
5239 6036 9.884814 ATTTCTGGTACAAGGAGTATATACTCT 57.115 33.333 32.00 20.00 45.18 3.24
5245 6042 8.582437 CGGAATATTTCTGGTACAAGGAGTATA 58.418 37.037 0.00 0.00 38.70 1.47
5246 6043 7.442656 CGGAATATTTCTGGTACAAGGAGTAT 58.557 38.462 0.00 0.00 38.70 2.12
5248 6045 5.671493 CGGAATATTTCTGGTACAAGGAGT 58.329 41.667 0.00 0.00 38.70 3.85
5261 6058 7.227910 TGAAACAATAGCTACCCGGAATATTTC 59.772 37.037 0.73 1.41 0.00 2.17



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.