Multiple sequence alignment - TraesCS1A01G348600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G348600 chr1A 100.000 3615 0 0 1 3615 533743489 533739875 0.000000e+00 6676.0
1 TraesCS1A01G348600 chr1A 88.580 648 66 7 2971 3615 473040529 473039887 0.000000e+00 780.0
2 TraesCS1A01G348600 chr1A 85.484 124 16 2 1118 1241 565293987 565294108 1.050000e-25 128.0
3 TraesCS1A01G348600 chr1D 89.769 1212 54 35 220 1391 436714003 436712822 0.000000e+00 1487.0
4 TraesCS1A01G348600 chr1D 87.500 680 34 23 2316 2980 436710766 436710123 0.000000e+00 737.0
5 TraesCS1A01G348600 chr1D 83.704 540 67 9 1573 2098 436712634 436712102 1.170000e-134 490.0
6 TraesCS1A01G348600 chr1D 90.426 188 13 4 4 190 436714189 436714006 3.610000e-60 243.0
7 TraesCS1A01G348600 chr1B 90.192 1040 47 27 220 1233 591513423 591512413 0.000000e+00 1304.0
8 TraesCS1A01G348600 chr1B 92.432 621 40 3 2322 2938 591457888 591457271 0.000000e+00 880.0
9 TraesCS1A01G348600 chr1B 87.973 582 31 22 2413 2980 591510649 591510093 0.000000e+00 651.0
10 TraesCS1A01G348600 chr1B 84.211 133 16 5 1104 1234 669710465 669710336 1.360000e-24 124.0
11 TraesCS1A01G348600 chr7D 91.981 636 46 5 2982 3615 558928751 558928119 0.000000e+00 887.0
12 TraesCS1A01G348600 chr5D 89.567 623 61 4 2982 3602 335861807 335861187 0.000000e+00 787.0
13 TraesCS1A01G348600 chr4A 88.854 637 63 7 2982 3615 236002130 236002761 0.000000e+00 776.0
14 TraesCS1A01G348600 chr4A 100.000 204 0 0 2099 2302 489439169 489439372 9.470000e-101 377.0
15 TraesCS1A01G348600 chr7A 88.558 638 64 8 2982 3615 476299011 476298379 0.000000e+00 765.0
16 TraesCS1A01G348600 chr7A 88.383 637 64 7 2982 3615 211805015 211805644 0.000000e+00 758.0
17 TraesCS1A01G348600 chr7A 88.069 637 69 6 2982 3615 33358105 33357473 0.000000e+00 749.0
18 TraesCS1A01G348600 chr7A 98.049 205 4 0 2099 2303 237507567 237507363 1.230000e-94 357.0
19 TraesCS1A01G348600 chr7A 98.039 204 4 0 2099 2302 668996948 668996745 4.440000e-94 355.0
20 TraesCS1A01G348600 chr5A 88.540 637 65 7 2982 3615 567888609 567887978 0.000000e+00 765.0
21 TraesCS1A01G348600 chr2A 88.069 637 67 7 2982 3615 71662305 71662935 0.000000e+00 747.0
22 TraesCS1A01G348600 chr2A 97.630 211 5 0 2099 2309 419652151 419651941 2.650000e-96 363.0
23 TraesCS1A01G348600 chr2A 88.991 109 12 0 1124 1232 4161433 4161541 6.300000e-28 135.0
24 TraesCS1A01G348600 chr2A 92.063 63 5 0 2432 2494 4164871 4164933 4.970000e-14 89.8
25 TraesCS1A01G348600 chr4B 99.020 204 2 0 2099 2302 38320092 38320295 2.050000e-97 366.0
26 TraesCS1A01G348600 chr4B 98.529 204 3 0 2099 2302 612329294 612329091 9.540000e-96 361.0
27 TraesCS1A01G348600 chr3B 99.020 204 2 0 2099 2302 72946486 72946283 2.050000e-97 366.0
28 TraesCS1A01G348600 chr3B 90.751 173 16 0 2436 2608 505042103 505041931 7.810000e-57 231.0
29 TraesCS1A01G348600 chr2B 98.049 205 4 0 2099 2303 573128659 573128863 1.230000e-94 357.0
30 TraesCS1A01G348600 chr2B 88.991 109 12 0 1124 1232 5689089 5688981 6.300000e-28 135.0
31 TraesCS1A01G348600 chr6B 98.039 204 4 0 2099 2302 713457439 713457236 4.440000e-94 355.0
32 TraesCS1A01G348600 chr3A 90.710 183 17 0 2436 2618 509533848 509533666 1.000000e-60 244.0
33 TraesCS1A01G348600 chr3A 86.726 113 15 0 1126 1238 455803772 455803660 3.790000e-25 126.0
34 TraesCS1A01G348600 chr3D 89.617 183 19 0 2436 2618 388438040 388437858 2.170000e-57 233.0
35 TraesCS1A01G348600 chr3D 86.726 113 15 0 1126 1238 337974589 337974477 3.790000e-25 126.0
36 TraesCS1A01G348600 chr2D 86.400 125 14 2 1115 1237 5669195 5669318 2.260000e-27 134.0
37 TraesCS1A01G348600 chr2D 93.651 63 4 0 2432 2494 5673845 5673907 1.070000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G348600 chr1A 533739875 533743489 3614 True 6676.00 6676 100.00000 1 3615 1 chr1A.!!$R2 3614
1 TraesCS1A01G348600 chr1A 473039887 473040529 642 True 780.00 780 88.58000 2971 3615 1 chr1A.!!$R1 644
2 TraesCS1A01G348600 chr1D 436710123 436714189 4066 True 739.25 1487 87.84975 4 2980 4 chr1D.!!$R1 2976
3 TraesCS1A01G348600 chr1B 591510093 591513423 3330 True 977.50 1304 89.08250 220 2980 2 chr1B.!!$R3 2760
4 TraesCS1A01G348600 chr1B 591457271 591457888 617 True 880.00 880 92.43200 2322 2938 1 chr1B.!!$R1 616
5 TraesCS1A01G348600 chr7D 558928119 558928751 632 True 887.00 887 91.98100 2982 3615 1 chr7D.!!$R1 633
6 TraesCS1A01G348600 chr5D 335861187 335861807 620 True 787.00 787 89.56700 2982 3602 1 chr5D.!!$R1 620
7 TraesCS1A01G348600 chr4A 236002130 236002761 631 False 776.00 776 88.85400 2982 3615 1 chr4A.!!$F1 633
8 TraesCS1A01G348600 chr7A 476298379 476299011 632 True 765.00 765 88.55800 2982 3615 1 chr7A.!!$R3 633
9 TraesCS1A01G348600 chr7A 211805015 211805644 629 False 758.00 758 88.38300 2982 3615 1 chr7A.!!$F1 633
10 TraesCS1A01G348600 chr7A 33357473 33358105 632 True 749.00 749 88.06900 2982 3615 1 chr7A.!!$R1 633
11 TraesCS1A01G348600 chr5A 567887978 567888609 631 True 765.00 765 88.54000 2982 3615 1 chr5A.!!$R1 633
12 TraesCS1A01G348600 chr2A 71662305 71662935 630 False 747.00 747 88.06900 2982 3615 1 chr2A.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 122 0.523072 CATTTCGTTGGGTCAGCCTG 59.477 55.0 0.00 0.00 34.45 4.85 F
1309 1368 0.385974 GTTGCAGGTTCGCATGTGAC 60.386 55.0 8.86 4.47 42.62 3.67 F
2113 2325 0.251564 TTGTGGGACCCGATTGCATT 60.252 50.0 5.91 0.00 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1477 0.108615 CAAAACACAACACCCCGCAA 60.109 50.000 0.00 0.00 0.0 4.85 R
2166 3192 0.028770 TGTGAAAACCGCTCGCTTTG 59.971 50.000 0.00 0.00 0.0 2.77 R
3104 4486 1.134487 CAGCAAATACACCCACGCG 59.866 57.895 3.53 3.53 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.068954 CGCTTTTCCCTGAGCAAAGAC 60.069 52.381 0.00 0.00 38.81 3.01
33 34 2.167487 AGCAAAGACTAGAGTAGCCAGC 59.833 50.000 0.00 0.00 0.00 4.85
52 53 5.051708 GCCAGCGAAAAACAAAAGAAACTAG 60.052 40.000 0.00 0.00 0.00 2.57
78 79 2.142292 AAAGCTTGATGGGCCGACCT 62.142 55.000 0.00 0.00 41.11 3.85
93 94 2.032528 CCTCCCAAAGACAGCGCA 59.967 61.111 11.47 0.00 0.00 6.09
96 97 1.475751 CCTCCCAAAGACAGCGCATAT 60.476 52.381 11.47 0.00 0.00 1.78
97 98 1.869767 CTCCCAAAGACAGCGCATATC 59.130 52.381 11.47 3.44 0.00 1.63
98 99 1.209261 TCCCAAAGACAGCGCATATCA 59.791 47.619 11.47 0.00 0.00 2.15
99 100 1.331756 CCCAAAGACAGCGCATATCAC 59.668 52.381 11.47 0.00 0.00 3.06
100 101 2.009051 CCAAAGACAGCGCATATCACA 58.991 47.619 11.47 0.00 0.00 3.58
101 102 2.223112 CCAAAGACAGCGCATATCACAC 60.223 50.000 11.47 0.00 0.00 3.82
120 122 0.523072 CATTTCGTTGGGTCAGCCTG 59.477 55.000 0.00 0.00 34.45 4.85
127 129 4.864334 GGGTCAGCCTGGCGATGG 62.864 72.222 13.96 4.71 34.45 3.51
132 134 1.221840 CAGCCTGGCGATGGTAGTT 59.778 57.895 13.96 0.00 0.00 2.24
190 192 1.559682 AGTGTTTGTGTGACAGGGTCT 59.440 47.619 0.00 0.00 33.15 3.85
191 193 2.026262 AGTGTTTGTGTGACAGGGTCTT 60.026 45.455 0.00 0.00 33.15 3.01
192 194 2.752903 GTGTTTGTGTGACAGGGTCTTT 59.247 45.455 0.00 0.00 33.15 2.52
193 195 3.192633 GTGTTTGTGTGACAGGGTCTTTT 59.807 43.478 0.00 0.00 33.15 2.27
194 196 3.442273 TGTTTGTGTGACAGGGTCTTTTC 59.558 43.478 0.00 0.00 33.15 2.29
195 197 3.644966 TTGTGTGACAGGGTCTTTTCT 57.355 42.857 0.00 0.00 33.15 2.52
196 198 3.194005 TGTGTGACAGGGTCTTTTCTC 57.806 47.619 0.00 0.00 33.15 2.87
197 199 2.503765 TGTGTGACAGGGTCTTTTCTCA 59.496 45.455 0.00 0.00 33.15 3.27
198 200 3.054728 TGTGTGACAGGGTCTTTTCTCAA 60.055 43.478 0.00 0.00 33.15 3.02
199 201 3.945285 GTGTGACAGGGTCTTTTCTCAAA 59.055 43.478 0.00 0.00 33.15 2.69
200 202 4.398044 GTGTGACAGGGTCTTTTCTCAAAA 59.602 41.667 0.00 0.00 33.15 2.44
201 203 5.013547 TGTGACAGGGTCTTTTCTCAAAAA 58.986 37.500 0.00 0.00 33.15 1.94
240 242 1.136336 GTCAGACCGACGACATTTTGC 60.136 52.381 0.00 0.00 34.19 3.68
316 319 2.579684 GATCTGGAGGGGACACGCAC 62.580 65.000 0.00 0.00 0.00 5.34
469 494 0.926293 CCCCCTCACTCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
470 495 1.133792 CCCCCTCACTCTCTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
471 496 1.846439 CCCCTCACTCTCTCTCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
472 497 2.158755 CCCCTCACTCTCTCTCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
473 498 2.774234 CCCTCACTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
474 499 3.181461 CCCTCACTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
475 500 3.708631 CCTCACTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
476 501 4.202202 CCTCACTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
477 502 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
478 503 4.646945 TCACTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
479 504 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
480 505 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
481 506 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
696 729 2.586357 GGAGCAACCGATCGAGGC 60.586 66.667 18.66 16.36 33.69 4.70
697 730 2.496817 GAGCAACCGATCGAGGCT 59.503 61.111 22.12 22.12 37.56 4.58
698 731 1.880340 GAGCAACCGATCGAGGCTG 60.880 63.158 25.37 14.36 34.44 4.85
699 732 2.892425 GCAACCGATCGAGGCTGG 60.892 66.667 18.66 0.27 33.69 4.85
701 734 4.162690 AACCGATCGAGGCTGGGC 62.163 66.667 18.66 0.00 33.69 5.36
704 737 4.637489 CGATCGAGGCTGGGCGAG 62.637 72.222 10.26 0.00 40.14 5.03
722 756 2.228914 GCGGCGTCACTTCCGTATC 61.229 63.158 9.37 0.00 46.79 2.24
723 757 1.937846 CGGCGTCACTTCCGTATCG 60.938 63.158 0.00 0.00 40.72 2.92
741 775 1.361668 CGGTGATGGAGAACTTGCGG 61.362 60.000 0.00 0.00 0.00 5.69
753 787 3.358076 CTTGCGGGAGGGAGACGAC 62.358 68.421 0.00 0.00 0.00 4.34
802 836 3.119245 GCTGTTCCGTCACTTCCAGTATA 60.119 47.826 0.00 0.00 0.00 1.47
836 882 3.210528 GATGGAGCAGCAGCAGCC 61.211 66.667 6.10 4.92 45.49 4.85
921 967 3.314331 CTGGTGGACTGGGCGTCT 61.314 66.667 0.00 0.00 42.44 4.18
977 1026 3.426568 GACTTCGCAGCAGGTGGC 61.427 66.667 0.86 0.00 45.30 5.01
1011 1060 2.801631 GGAGGAGATGGTGAGCGGG 61.802 68.421 0.00 0.00 0.00 6.13
1013 1062 4.554036 GGAGATGGTGAGCGGGGC 62.554 72.222 0.00 0.00 0.00 5.80
1309 1368 0.385974 GTTGCAGGTTCGCATGTGAC 60.386 55.000 8.86 4.47 42.62 3.67
1331 1398 5.229423 ACGTGCATGCATAAACTTGAAATT 58.771 33.333 25.64 0.00 0.00 1.82
1334 1401 7.545265 ACGTGCATGCATAAACTTGAAATTAAT 59.455 29.630 25.64 0.00 0.00 1.40
1335 1402 8.051909 CGTGCATGCATAAACTTGAAATTAATC 58.948 33.333 25.64 2.84 0.00 1.75
1337 1404 9.433153 TGCATGCATAAACTTGAAATTAATCAA 57.567 25.926 18.46 0.00 37.70 2.57
1362 1432 0.455410 TTGTGTGTGCTCTTTGTGCC 59.545 50.000 0.00 0.00 0.00 5.01
1363 1433 1.009675 GTGTGTGCTCTTTGTGCCG 60.010 57.895 0.00 0.00 0.00 5.69
1378 1453 1.732259 GTGCCGACAGTAGACCATTTG 59.268 52.381 0.00 0.00 0.00 2.32
1379 1454 1.346395 TGCCGACAGTAGACCATTTGT 59.654 47.619 0.00 0.00 0.00 2.83
1380 1455 1.732259 GCCGACAGTAGACCATTTGTG 59.268 52.381 0.00 0.00 0.00 3.33
1383 1458 3.390135 CGACAGTAGACCATTTGTGTGT 58.610 45.455 0.00 0.00 0.00 3.72
1384 1459 3.807622 CGACAGTAGACCATTTGTGTGTT 59.192 43.478 0.00 0.00 0.00 3.32
1385 1460 4.272504 CGACAGTAGACCATTTGTGTGTTT 59.727 41.667 0.00 0.00 0.00 2.83
1386 1461 5.499139 ACAGTAGACCATTTGTGTGTTTG 57.501 39.130 0.00 0.00 0.00 2.93
1387 1462 4.947388 ACAGTAGACCATTTGTGTGTTTGT 59.053 37.500 0.00 0.00 0.00 2.83
1388 1463 5.163663 ACAGTAGACCATTTGTGTGTTTGTG 60.164 40.000 0.00 0.00 0.00 3.33
1389 1464 4.947388 AGTAGACCATTTGTGTGTTTGTGT 59.053 37.500 0.00 0.00 0.00 3.72
1390 1465 6.037720 CAGTAGACCATTTGTGTGTTTGTGTA 59.962 38.462 0.00 0.00 0.00 2.90
1391 1466 5.243426 AGACCATTTGTGTGTTTGTGTAC 57.757 39.130 0.00 0.00 0.00 2.90
1392 1467 4.097286 AGACCATTTGTGTGTTTGTGTACC 59.903 41.667 0.00 0.00 0.00 3.34
1393 1468 3.131400 ACCATTTGTGTGTTTGTGTACCC 59.869 43.478 0.00 0.00 0.00 3.69
1394 1469 3.131223 CCATTTGTGTGTTTGTGTACCCA 59.869 43.478 0.00 0.00 0.00 4.51
1395 1470 4.202202 CCATTTGTGTGTTTGTGTACCCAT 60.202 41.667 0.00 0.00 0.00 4.00
1396 1471 5.355596 CATTTGTGTGTTTGTGTACCCATT 58.644 37.500 0.00 0.00 0.00 3.16
1397 1472 5.407407 TTTGTGTGTTTGTGTACCCATTT 57.593 34.783 0.00 0.00 0.00 2.32
1398 1473 5.407407 TTGTGTGTTTGTGTACCCATTTT 57.593 34.783 0.00 0.00 0.00 1.82
1399 1474 5.407407 TGTGTGTTTGTGTACCCATTTTT 57.593 34.783 0.00 0.00 0.00 1.94
1427 1502 3.018149 GGGGTGTTGTGTTTTGTGTAGA 58.982 45.455 0.00 0.00 0.00 2.59
1431 1508 6.015772 GGGGTGTTGTGTTTTGTGTAGATTAT 60.016 38.462 0.00 0.00 0.00 1.28
1454 1531 6.001449 TCTAGGTGCATAAGCTTAATTGGT 57.999 37.500 10.85 0.00 42.74 3.67
1484 1564 1.404035 CGTTAATTTGCACCCTAGCCC 59.596 52.381 0.00 0.00 0.00 5.19
1485 1565 1.754803 GTTAATTTGCACCCTAGCCCC 59.245 52.381 0.00 0.00 0.00 5.80
1486 1566 1.304891 TAATTTGCACCCTAGCCCCT 58.695 50.000 0.00 0.00 0.00 4.79
1487 1567 1.304891 AATTTGCACCCTAGCCCCTA 58.695 50.000 0.00 0.00 0.00 3.53
1488 1568 0.846693 ATTTGCACCCTAGCCCCTAG 59.153 55.000 0.00 0.00 34.16 3.02
1490 1570 0.549169 TTGCACCCTAGCCCCTAGTT 60.549 55.000 0.00 0.00 32.62 2.24
1506 1586 8.630998 AGCCCCTAGTTATATACTAACTGGTAT 58.369 37.037 13.45 0.00 38.84 2.73
1520 1678 4.553330 ACTGGTATTTGATGACGAAGGT 57.447 40.909 0.00 0.00 0.00 3.50
1532 1690 1.080093 CGAAGGTCAGCCGTAGCAA 60.080 57.895 0.00 0.00 43.56 3.91
1538 1699 2.432456 CAGCCGTAGCAAGCGACA 60.432 61.111 6.15 0.00 43.56 4.35
1550 1711 1.875963 AGCGACAAAATGCTTCCGG 59.124 52.632 0.00 0.00 38.57 5.14
1564 1725 4.145807 TGCTTCCGGGAGTTGAAAATAAA 58.854 39.130 12.53 0.00 0.00 1.40
1565 1726 4.217550 TGCTTCCGGGAGTTGAAAATAAAG 59.782 41.667 12.53 0.00 0.00 1.85
1568 1729 6.678164 GCTTCCGGGAGTTGAAAATAAAGATC 60.678 42.308 12.53 0.00 0.00 2.75
1600 1774 6.841229 TCTTATTGTAGGTGATCTCTCCACAT 59.159 38.462 0.00 0.00 36.31 3.21
1601 1775 4.743057 TTGTAGGTGATCTCTCCACATG 57.257 45.455 0.00 0.00 36.31 3.21
1607 1781 3.066342 GGTGATCTCTCCACATGCAATTG 59.934 47.826 0.00 0.00 36.31 2.32
1639 1813 8.773645 TGCATATCGGTTATCAACTATTGAAAG 58.226 33.333 0.00 0.00 43.95 2.62
1644 1818 7.092079 TCGGTTATCAACTATTGAAAGTTCGA 58.908 34.615 0.00 0.66 43.95 3.71
1689 1870 8.289939 AGCAAGTAATCAATTCTCACATGAAT 57.710 30.769 0.00 0.00 38.19 2.57
1744 1927 7.831193 ACTTCTTTAGATGTGCCAATTAGACAT 59.169 33.333 0.00 0.00 32.16 3.06
1779 1982 4.496175 GCATTGTTTGTTCTTTGGCTTTGG 60.496 41.667 0.00 0.00 0.00 3.28
1795 1998 1.911454 TTGGTCCCCATCATGATCCT 58.089 50.000 4.86 0.00 31.53 3.24
1801 2004 3.196685 GTCCCCATCATGATCCTACTAGC 59.803 52.174 4.86 0.00 0.00 3.42
1811 2014 4.981812 TGATCCTACTAGCGACCTTATCA 58.018 43.478 0.00 0.00 0.00 2.15
1813 2016 6.010850 TGATCCTACTAGCGACCTTATCAAT 58.989 40.000 0.00 0.00 0.00 2.57
1814 2017 5.707242 TCCTACTAGCGACCTTATCAATG 57.293 43.478 0.00 0.00 0.00 2.82
1815 2018 4.022242 TCCTACTAGCGACCTTATCAATGC 60.022 45.833 0.00 0.00 0.00 3.56
1825 2031 4.613437 ACCTTATCAATGCCATTGGTTCT 58.387 39.130 16.96 3.37 40.61 3.01
1830 2036 3.025978 TCAATGCCATTGGTTCTGATCC 58.974 45.455 16.96 0.00 40.61 3.36
1834 2040 2.291735 TGCCATTGGTTCTGATCCACAT 60.292 45.455 6.96 2.71 34.45 3.21
1856 2067 7.013274 CACATTTGGAAAGAAAGTAGGAGAACA 59.987 37.037 0.00 0.00 0.00 3.18
1857 2068 7.229506 ACATTTGGAAAGAAAGTAGGAGAACAG 59.770 37.037 0.00 0.00 0.00 3.16
1866 2077 3.422796 AGTAGGAGAACAGTGTCACGAT 58.577 45.455 0.00 0.00 0.00 3.73
1868 2079 4.636648 AGTAGGAGAACAGTGTCACGATAG 59.363 45.833 0.00 0.00 46.19 2.08
1885 2097 1.196104 TAGTGTGGGAAAGACGGGGG 61.196 60.000 0.00 0.00 0.00 5.40
1886 2098 3.961414 TGTGGGAAAGACGGGGGC 61.961 66.667 0.00 0.00 0.00 5.80
1888 2100 3.179339 TGGGAAAGACGGGGGCAA 61.179 61.111 0.00 0.00 0.00 4.52
1889 2101 2.359011 GGGAAAGACGGGGGCAAT 59.641 61.111 0.00 0.00 0.00 3.56
1905 2117 3.066760 GGGCAATAAAAGACCCAATCGAG 59.933 47.826 0.00 0.00 42.33 4.04
1914 2126 0.983378 ACCCAATCGAGGAGGGAAGG 60.983 60.000 22.25 3.60 45.80 3.46
1920 2132 4.353777 CAATCGAGGAGGGAAGGGATATA 58.646 47.826 0.00 0.00 0.00 0.86
1922 2134 3.775910 TCGAGGAGGGAAGGGATATAAC 58.224 50.000 0.00 0.00 0.00 1.89
1930 2142 4.106341 AGGGAAGGGATATAACAACATGGG 59.894 45.833 0.00 0.00 0.00 4.00
1946 2158 3.740115 CATGGGCTATGTGGTAAGGTAC 58.260 50.000 2.19 0.00 31.92 3.34
1980 2192 9.189156 CTCAATATATCTAAGAAGAGGAGAGGG 57.811 40.741 0.00 0.00 34.49 4.30
2058 2270 3.399330 ACTTAAGGTGTCATGTGAACGG 58.601 45.455 7.53 0.00 0.00 4.44
2061 2273 2.169832 AGGTGTCATGTGAACGGAAG 57.830 50.000 0.00 0.00 0.00 3.46
2081 2293 1.347378 GTTTGGGTGTGATGGCCAAAT 59.653 47.619 10.96 0.00 33.86 2.32
2089 2301 1.895131 GTGATGGCCAAATGGTGAAGT 59.105 47.619 10.96 0.00 37.57 3.01
2092 2304 2.906691 TGGCCAAATGGTGAAGTTTG 57.093 45.000 0.61 0.00 37.57 2.93
2095 2307 3.054802 TGGCCAAATGGTGAAGTTTGTTT 60.055 39.130 0.61 0.00 37.57 2.83
2096 2308 3.312146 GGCCAAATGGTGAAGTTTGTTTG 59.688 43.478 0.00 0.00 37.57 2.93
2098 2310 4.201802 GCCAAATGGTGAAGTTTGTTTGTG 60.202 41.667 0.71 0.00 37.57 3.33
2099 2311 4.332268 CCAAATGGTGAAGTTTGTTTGTGG 59.668 41.667 0.00 0.00 34.37 4.17
2100 2312 3.817709 ATGGTGAAGTTTGTTTGTGGG 57.182 42.857 0.00 0.00 0.00 4.61
2101 2313 2.808919 TGGTGAAGTTTGTTTGTGGGA 58.191 42.857 0.00 0.00 0.00 4.37
2102 2314 2.494073 TGGTGAAGTTTGTTTGTGGGAC 59.506 45.455 0.00 0.00 0.00 4.46
2103 2315 2.159156 GGTGAAGTTTGTTTGTGGGACC 60.159 50.000 0.00 0.00 0.00 4.46
2104 2316 2.104170 TGAAGTTTGTTTGTGGGACCC 58.896 47.619 2.45 2.45 0.00 4.46
2105 2317 1.066454 GAAGTTTGTTTGTGGGACCCG 59.934 52.381 5.91 0.00 0.00 5.28
2106 2318 0.256464 AGTTTGTTTGTGGGACCCGA 59.744 50.000 5.91 0.00 0.00 5.14
2107 2319 1.133606 AGTTTGTTTGTGGGACCCGAT 60.134 47.619 5.91 0.00 0.00 4.18
2108 2320 1.684450 GTTTGTTTGTGGGACCCGATT 59.316 47.619 5.91 0.00 0.00 3.34
2110 2322 1.175983 TGTTTGTGGGACCCGATTGC 61.176 55.000 5.91 0.00 0.00 3.56
2111 2323 1.151679 TTTGTGGGACCCGATTGCA 59.848 52.632 5.91 0.00 0.00 4.08
2113 2325 0.251564 TTGTGGGACCCGATTGCATT 60.252 50.000 5.91 0.00 0.00 3.56
2114 2326 0.251564 TGTGGGACCCGATTGCATTT 60.252 50.000 5.91 0.00 0.00 2.32
2115 2327 0.894835 GTGGGACCCGATTGCATTTT 59.105 50.000 5.91 0.00 0.00 1.82
2116 2328 1.275010 GTGGGACCCGATTGCATTTTT 59.725 47.619 5.91 0.00 0.00 1.94
2118 2330 2.757868 TGGGACCCGATTGCATTTTTAG 59.242 45.455 5.91 0.00 0.00 1.85
2119 2331 2.481276 GGGACCCGATTGCATTTTTAGC 60.481 50.000 0.00 0.00 0.00 3.09
2122 3148 1.535860 CCCGATTGCATTTTTAGCCCG 60.536 52.381 0.00 0.00 0.00 6.13
2123 3149 1.134175 CCGATTGCATTTTTAGCCCGT 59.866 47.619 0.00 0.00 0.00 5.28
2125 3151 3.249917 CGATTGCATTTTTAGCCCGTTT 58.750 40.909 0.00 0.00 0.00 3.60
2128 3154 5.051774 CGATTGCATTTTTAGCCCGTTTATG 60.052 40.000 0.00 0.00 0.00 1.90
2129 3155 4.792521 TGCATTTTTAGCCCGTTTATGT 57.207 36.364 0.00 0.00 0.00 2.29
2132 3158 4.326009 GCATTTTTAGCCCGTTTATGTGTG 59.674 41.667 0.00 0.00 0.00 3.82
2136 3162 1.303806 GCCCGTTTATGTGTGGGGT 60.304 57.895 0.00 0.00 42.19 4.95
2141 3167 0.606096 GTTTATGTGTGGGGTTGGGC 59.394 55.000 0.00 0.00 0.00 5.36
2144 3170 1.431195 TATGTGTGGGGTTGGGCAGT 61.431 55.000 0.00 0.00 0.00 4.40
2145 3171 2.597510 GTGTGGGGTTGGGCAGTC 60.598 66.667 0.00 0.00 0.00 3.51
2146 3172 3.099841 TGTGGGGTTGGGCAGTCA 61.100 61.111 0.00 0.00 0.00 3.41
2151 3177 0.681243 GGGGTTGGGCAGTCAGATTC 60.681 60.000 0.00 0.00 0.00 2.52
2152 3178 1.026718 GGGTTGGGCAGTCAGATTCG 61.027 60.000 0.00 0.00 0.00 3.34
2153 3179 1.648467 GGTTGGGCAGTCAGATTCGC 61.648 60.000 0.00 0.00 0.00 4.70
2156 3182 1.741770 GGGCAGTCAGATTCGCGTT 60.742 57.895 5.77 0.00 0.00 4.84
2157 3183 1.298859 GGGCAGTCAGATTCGCGTTT 61.299 55.000 5.77 0.00 0.00 3.60
2158 3184 1.355971 GGCAGTCAGATTCGCGTTTA 58.644 50.000 5.77 0.00 0.00 2.01
2159 3185 1.730064 GGCAGTCAGATTCGCGTTTAA 59.270 47.619 5.77 0.00 0.00 1.52
2162 3188 2.093783 CAGTCAGATTCGCGTTTAACCC 59.906 50.000 5.77 0.00 0.00 4.11
2165 3191 1.396996 CAGATTCGCGTTTAACCCAGG 59.603 52.381 5.77 0.00 0.00 4.45
2166 3192 0.098200 GATTCGCGTTTAACCCAGGC 59.902 55.000 5.77 0.00 0.00 4.85
2168 3194 0.818445 TTCGCGTTTAACCCAGGCAA 60.818 50.000 5.77 0.00 0.00 4.52
2169 3195 0.818445 TCGCGTTTAACCCAGGCAAA 60.818 50.000 5.77 0.00 0.00 3.68
2170 3196 0.386731 CGCGTTTAACCCAGGCAAAG 60.387 55.000 0.00 0.00 0.00 2.77
2171 3197 0.666274 GCGTTTAACCCAGGCAAAGC 60.666 55.000 0.00 0.00 0.00 3.51
2172 3198 0.386731 CGTTTAACCCAGGCAAAGCG 60.387 55.000 0.00 0.00 0.00 4.68
2173 3199 0.955905 GTTTAACCCAGGCAAAGCGA 59.044 50.000 0.00 0.00 0.00 4.93
2175 3201 1.241315 TTAACCCAGGCAAAGCGAGC 61.241 55.000 0.00 0.00 0.00 5.03
2179 3205 3.357079 CAGGCAAAGCGAGCGGTT 61.357 61.111 1.02 1.02 37.44 4.44
2180 3206 2.594592 AGGCAAAGCGAGCGGTTT 60.595 55.556 13.49 13.49 45.19 3.27
2181 3207 2.193536 AGGCAAAGCGAGCGGTTTT 61.194 52.632 16.19 1.39 42.89 2.43
2182 3208 1.729484 GGCAAAGCGAGCGGTTTTC 60.729 57.895 16.19 12.08 42.89 2.29
2183 3209 1.008995 GCAAAGCGAGCGGTTTTCA 60.009 52.632 16.19 0.00 42.89 2.69
2185 3211 0.028770 CAAAGCGAGCGGTTTTCACA 59.971 50.000 16.19 0.00 42.89 3.58
2188 3214 0.814010 AGCGAGCGGTTTTCACACTT 60.814 50.000 0.00 0.00 0.00 3.16
2189 3215 0.657368 GCGAGCGGTTTTCACACTTG 60.657 55.000 0.00 0.00 0.00 3.16
2190 3216 0.041312 CGAGCGGTTTTCACACTTGG 60.041 55.000 0.00 0.00 0.00 3.61
2192 3218 2.215196 GAGCGGTTTTCACACTTGGTA 58.785 47.619 0.00 0.00 0.00 3.25
2193 3219 2.218603 AGCGGTTTTCACACTTGGTAG 58.781 47.619 0.00 0.00 0.00 3.18
2195 3221 2.356695 GCGGTTTTCACACTTGGTAGTT 59.643 45.455 0.00 0.00 30.26 2.24
2198 3224 5.404096 CGGTTTTCACACTTGGTAGTTTTT 58.596 37.500 0.00 0.00 30.26 1.94
2235 3261 4.906065 AAAAAGTGGTAGTTTTCGGGAC 57.094 40.909 0.00 0.00 30.05 4.46
2236 3262 3.564053 AAAGTGGTAGTTTTCGGGACA 57.436 42.857 0.00 0.00 0.00 4.02
2237 3263 3.564053 AAGTGGTAGTTTTCGGGACAA 57.436 42.857 0.00 0.00 0.00 3.18
2238 3264 3.564053 AGTGGTAGTTTTCGGGACAAA 57.436 42.857 0.00 0.00 0.00 2.83
2239 3265 3.888583 AGTGGTAGTTTTCGGGACAAAA 58.111 40.909 0.00 0.00 0.00 2.44
2241 3267 4.517832 AGTGGTAGTTTTCGGGACAAAATC 59.482 41.667 0.00 0.00 0.00 2.17
2242 3268 3.499157 TGGTAGTTTTCGGGACAAAATCG 59.501 43.478 0.00 0.00 0.00 3.34
2243 3269 3.499537 GGTAGTTTTCGGGACAAAATCGT 59.500 43.478 0.00 0.00 0.00 3.73
2244 3270 4.690280 GGTAGTTTTCGGGACAAAATCGTA 59.310 41.667 0.00 0.00 0.00 3.43
2245 3271 5.179182 GGTAGTTTTCGGGACAAAATCGTAA 59.821 40.000 0.00 0.00 0.00 3.18
2247 3273 5.754778 AGTTTTCGGGACAAAATCGTAAAG 58.245 37.500 0.00 0.00 0.00 1.85
2249 3275 4.735662 TTCGGGACAAAATCGTAAAGTG 57.264 40.909 0.00 0.00 0.00 3.16
2250 3276 3.068560 TCGGGACAAAATCGTAAAGTGG 58.931 45.455 0.00 0.00 0.00 4.00
2257 3514 7.420002 GGACAAAATCGTAAAGTGGTAGTTTT 58.580 34.615 0.00 0.00 0.00 2.43
2258 3515 7.588854 GGACAAAATCGTAAAGTGGTAGTTTTC 59.411 37.037 0.00 0.00 0.00 2.29
2260 3517 8.126700 ACAAAATCGTAAAGTGGTAGTTTTCTG 58.873 33.333 0.00 0.00 0.00 3.02
2266 3523 3.814005 AGTGGTAGTTTTCTGTCACGT 57.186 42.857 0.00 0.00 38.33 4.49
2270 3527 3.872771 TGGTAGTTTTCTGTCACGTTTCC 59.127 43.478 0.00 0.00 0.00 3.13
2271 3528 3.060070 GGTAGTTTTCTGTCACGTTTCCG 60.060 47.826 0.00 0.00 40.83 4.30
2272 3529 1.329599 AGTTTTCTGTCACGTTTCCGC 59.670 47.619 0.00 0.00 37.70 5.54
2273 3530 0.302288 TTTTCTGTCACGTTTCCGCG 59.698 50.000 0.00 0.00 37.70 6.46
2275 3532 0.528033 TTCTGTCACGTTTCCGCGAA 60.528 50.000 8.23 0.00 37.70 4.70
2277 3534 0.511221 CTGTCACGTTTCCGCGAATT 59.489 50.000 8.23 0.00 37.70 2.17
2278 3535 0.233590 TGTCACGTTTCCGCGAATTG 59.766 50.000 8.23 0.00 37.70 2.32
2279 3536 0.233848 GTCACGTTTCCGCGAATTGT 59.766 50.000 8.23 0.00 37.70 2.71
2280 3537 0.233590 TCACGTTTCCGCGAATTGTG 59.766 50.000 8.23 9.89 37.70 3.33
2288 3545 2.981400 CCGCGAATTGTGGTAGTTTT 57.019 45.000 8.23 0.00 43.63 2.43
2289 3546 3.276882 CCGCGAATTGTGGTAGTTTTT 57.723 42.857 8.23 0.00 43.63 1.94
2290 3547 2.977169 CCGCGAATTGTGGTAGTTTTTG 59.023 45.455 8.23 0.00 43.63 2.44
2291 3548 2.977169 CGCGAATTGTGGTAGTTTTTGG 59.023 45.455 0.00 0.00 0.00 3.28
2293 3550 4.364860 GCGAATTGTGGTAGTTTTTGGTT 58.635 39.130 0.00 0.00 0.00 3.67
2294 3551 5.521544 GCGAATTGTGGTAGTTTTTGGTTA 58.478 37.500 0.00 0.00 0.00 2.85
2295 3552 5.978322 GCGAATTGTGGTAGTTTTTGGTTAA 59.022 36.000 0.00 0.00 0.00 2.01
2297 3554 7.170151 GCGAATTGTGGTAGTTTTTGGTTAAAT 59.830 33.333 0.00 0.00 0.00 1.40
2298 3555 9.680315 CGAATTGTGGTAGTTTTTGGTTAAATA 57.320 29.630 0.00 0.00 0.00 1.40
2303 3560 9.411189 TGTGGTAGTTTTTGGTTAAATACTCTT 57.589 29.630 0.00 0.00 38.47 2.85
2605 3973 0.322975 GGCAGCTTCAGTTCCTCTCA 59.677 55.000 0.00 0.00 0.00 3.27
2647 4015 1.430632 GCATGTGGAGGAATGCGTG 59.569 57.895 0.00 0.00 39.78 5.34
2687 4056 0.987294 ACAGCCCAGCATACTCAGTT 59.013 50.000 0.00 0.00 0.00 3.16
2722 4092 3.325135 GGATAACATGTCCTACCTCCCAG 59.675 52.174 0.00 0.00 32.85 4.45
2739 4109 5.657302 CCTCCCAGTTACTCACTATACAACT 59.343 44.000 0.00 0.00 32.76 3.16
2741 4111 6.250711 TCCCAGTTACTCACTATACAACTGA 58.749 40.000 12.93 0.00 45.67 3.41
2746 4121 8.132362 CAGTTACTCACTATACAACTGATCTCC 58.868 40.741 6.89 0.00 45.67 3.71
2753 4128 4.970860 ATACAACTGATCTCCCTCCATG 57.029 45.455 0.00 0.00 0.00 3.66
2830 4205 8.744568 TGTGATTCCATGCTAAAATACATGTA 57.255 30.769 8.27 8.27 41.69 2.29
2831 4206 9.353431 TGTGATTCCATGCTAAAATACATGTAT 57.647 29.630 12.75 12.75 41.69 2.29
2832 4207 9.616634 GTGATTCCATGCTAAAATACATGTATG 57.383 33.333 18.94 7.73 41.69 2.39
2949 4326 9.436957 TGTGGTTAAAGAAGATATGAGAGAAAC 57.563 33.333 0.00 0.00 0.00 2.78
2965 4347 6.542370 TGAGAGAAACAAGGAAAAACACCTAG 59.458 38.462 0.00 0.00 36.67 3.02
2967 4349 6.318900 AGAGAAACAAGGAAAAACACCTAGTG 59.681 38.462 0.00 0.00 36.67 2.74
3019 4401 1.011968 TCTTACAACTTGCGCGCGAT 61.012 50.000 37.18 12.70 0.00 4.58
3093 4475 2.733945 GGGTGTGCAAATGCGGTT 59.266 55.556 0.35 0.00 45.83 4.44
3337 4723 1.003118 AGGCGAACTCTTGTAATGGCA 59.997 47.619 0.00 0.00 0.00 4.92
3374 4760 2.068519 CACAACTGATCGTGCTTGCTA 58.931 47.619 0.00 0.00 0.00 3.49
3389 4775 6.620678 GTGCTTGCTATTTCATTTGGACTAA 58.379 36.000 0.00 0.00 0.00 2.24
3403 4789 9.923143 TCATTTGGACTAATAAGGTATATCACG 57.077 33.333 0.00 0.00 0.00 4.35
3493 4879 7.857734 TCAGATTCAAACAATATTTCCGCTA 57.142 32.000 0.00 0.00 0.00 4.26
3534 4920 4.530710 ACGTACATTCCTTCTGCACTAA 57.469 40.909 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068954 GTCTTTGCTCAGGGAAAAGCG 60.069 52.381 0.00 0.00 39.76 4.68
1 2 2.234143 AGTCTTTGCTCAGGGAAAAGC 58.766 47.619 0.00 0.00 39.76 3.51
2 3 4.899502 TCTAGTCTTTGCTCAGGGAAAAG 58.100 43.478 0.00 0.00 40.96 2.27
7 8 3.181480 GCTACTCTAGTCTTTGCTCAGGG 60.181 52.174 0.00 0.00 0.00 4.45
20 21 3.585862 TGTTTTTCGCTGGCTACTCTAG 58.414 45.455 0.00 0.00 0.00 2.43
33 34 5.685954 GCTCCCTAGTTTCTTTTGTTTTTCG 59.314 40.000 0.00 0.00 0.00 3.46
78 79 1.209261 TGATATGCGCTGTCTTTGGGA 59.791 47.619 9.73 0.00 0.00 4.37
93 94 4.584874 TGACCCAACGAAATGTGTGATAT 58.415 39.130 0.00 0.00 0.00 1.63
96 97 2.217750 CTGACCCAACGAAATGTGTGA 58.782 47.619 0.00 0.00 0.00 3.58
97 98 1.334960 GCTGACCCAACGAAATGTGTG 60.335 52.381 0.00 0.00 0.00 3.82
98 99 0.951558 GCTGACCCAACGAAATGTGT 59.048 50.000 0.00 0.00 0.00 3.72
99 100 0.240945 GGCTGACCCAACGAAATGTG 59.759 55.000 0.00 0.00 0.00 3.21
100 101 0.110486 AGGCTGACCCAACGAAATGT 59.890 50.000 0.00 0.00 36.11 2.71
101 102 0.523072 CAGGCTGACCCAACGAAATG 59.477 55.000 9.42 0.00 36.11 2.32
120 122 1.130561 GCAGTTCAAACTACCATCGCC 59.869 52.381 0.00 0.00 37.08 5.54
127 129 3.251004 CAGGACCTTGCAGTTCAAACTAC 59.749 47.826 0.00 0.00 37.08 2.73
132 134 0.823356 GCCAGGACCTTGCAGTTCAA 60.823 55.000 12.62 0.00 0.00 2.69
148 150 1.335132 GGACTATGGAACTCGGGCCA 61.335 60.000 4.39 0.00 38.78 5.36
155 157 6.173339 CACAAACACTATGGACTATGGAACT 58.827 40.000 0.00 0.00 0.00 3.01
202 204 4.764823 TCTGACCTGTCACACAAACTTTTT 59.235 37.500 0.00 0.00 35.46 1.94
203 205 4.156008 GTCTGACCTGTCACACAAACTTTT 59.844 41.667 0.00 0.00 35.46 2.27
204 206 3.689649 GTCTGACCTGTCACACAAACTTT 59.310 43.478 0.00 0.00 35.46 2.66
205 207 3.270877 GTCTGACCTGTCACACAAACTT 58.729 45.455 0.00 0.00 35.46 2.66
206 208 2.420129 GGTCTGACCTGTCACACAAACT 60.420 50.000 19.53 0.00 34.73 2.66
207 209 1.940613 GGTCTGACCTGTCACACAAAC 59.059 52.381 19.53 0.00 34.73 2.93
208 210 1.472552 CGGTCTGACCTGTCACACAAA 60.473 52.381 23.49 0.00 35.66 2.83
209 211 0.104120 CGGTCTGACCTGTCACACAA 59.896 55.000 23.49 0.00 35.66 3.33
210 212 0.753848 TCGGTCTGACCTGTCACACA 60.754 55.000 23.49 0.00 35.66 3.72
211 213 0.318784 GTCGGTCTGACCTGTCACAC 60.319 60.000 23.49 8.38 42.04 3.82
212 214 1.792118 CGTCGGTCTGACCTGTCACA 61.792 60.000 23.49 0.43 45.23 3.58
213 215 1.081376 CGTCGGTCTGACCTGTCAC 60.081 63.158 23.49 13.39 45.23 3.67
214 216 1.228033 TCGTCGGTCTGACCTGTCA 60.228 57.895 23.49 0.00 45.23 3.58
215 217 1.209640 GTCGTCGGTCTGACCTGTC 59.790 63.158 23.49 13.56 45.23 3.51
216 218 0.894184 ATGTCGTCGGTCTGACCTGT 60.894 55.000 23.49 0.31 45.23 4.00
217 219 0.243907 AATGTCGTCGGTCTGACCTG 59.756 55.000 23.49 16.69 45.23 4.00
218 220 0.966920 AAATGTCGTCGGTCTGACCT 59.033 50.000 23.49 0.90 45.23 3.85
240 242 2.096417 CGCGTACCTCAAAAAGTCAAGG 60.096 50.000 0.00 0.00 34.94 3.61
316 319 2.150218 CACGTACGTACTGCCTGCG 61.150 63.158 22.34 10.64 0.00 5.18
321 324 0.526954 CATCCCCACGTACGTACTGC 60.527 60.000 22.34 0.00 0.00 4.40
469 494 1.484653 CACGGGAGAGAGAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
470 495 1.475034 CCACGGGAGAGAGAGAGAGAG 60.475 61.905 0.00 0.00 0.00 3.20
471 496 0.544223 CCACGGGAGAGAGAGAGAGA 59.456 60.000 0.00 0.00 0.00 3.10
472 497 0.544223 TCCACGGGAGAGAGAGAGAG 59.456 60.000 0.00 0.00 0.00 3.20
473 498 1.142060 GATCCACGGGAGAGAGAGAGA 59.858 57.143 0.00 0.00 34.05 3.10
474 499 1.604604 GATCCACGGGAGAGAGAGAG 58.395 60.000 0.00 0.00 34.05 3.20
475 500 0.179043 CGATCCACGGGAGAGAGAGA 60.179 60.000 0.00 0.00 34.05 3.10
476 501 1.791103 GCGATCCACGGGAGAGAGAG 61.791 65.000 0.00 0.00 42.83 3.20
477 502 1.824329 GCGATCCACGGGAGAGAGA 60.824 63.158 0.00 0.00 42.83 3.10
478 503 2.725008 GCGATCCACGGGAGAGAG 59.275 66.667 0.00 0.00 42.83 3.20
519 548 4.389576 GGCAAACCGAGCGTGCTG 62.390 66.667 0.00 0.00 38.36 4.41
588 621 0.324943 ATAGACGGTTGGTTGCAGCT 59.675 50.000 0.00 0.00 0.00 4.24
589 622 2.018542 TATAGACGGTTGGTTGCAGC 57.981 50.000 0.00 0.00 0.00 5.25
590 623 4.056050 GGTATATAGACGGTTGGTTGCAG 58.944 47.826 0.00 0.00 0.00 4.41
591 624 3.451540 TGGTATATAGACGGTTGGTTGCA 59.548 43.478 0.00 0.00 0.00 4.08
722 756 1.361668 CCGCAAGTTCTCCATCACCG 61.362 60.000 0.00 0.00 0.00 4.94
723 757 1.026718 CCCGCAAGTTCTCCATCACC 61.027 60.000 0.00 0.00 0.00 4.02
741 775 2.037527 AGGTGGTCGTCTCCCTCC 59.962 66.667 0.00 0.00 36.15 4.30
802 836 4.827087 CAGCGGCGGAGACTGCAT 62.827 66.667 9.78 0.00 37.51 3.96
864 910 4.167720 TGGCCACCCAGATGATCA 57.832 55.556 0.00 0.00 35.79 2.92
960 1006 3.426568 GCCACCTGCTGCGAAGTC 61.427 66.667 0.00 0.00 36.87 3.01
989 1038 1.828768 CTCACCATCTCCTCCCTGC 59.171 63.158 0.00 0.00 0.00 4.85
991 1040 1.760086 CGCTCACCATCTCCTCCCT 60.760 63.158 0.00 0.00 0.00 4.20
1044 1093 2.283966 ACGCCACTACTGCTCCCT 60.284 61.111 0.00 0.00 0.00 4.20
1309 1368 5.766702 AATTTCAAGTTTATGCATGCACG 57.233 34.783 25.37 5.76 0.00 5.34
1331 1398 5.299028 AGAGCACACACAACATGTTTGATTA 59.701 36.000 20.41 0.00 37.73 1.75
1334 1401 3.016031 AGAGCACACACAACATGTTTGA 58.984 40.909 20.41 0.00 40.83 2.69
1335 1402 3.425577 AGAGCACACACAACATGTTTG 57.574 42.857 8.77 12.83 40.64 2.93
1337 1404 3.193267 ACAAAGAGCACACACAACATGTT 59.807 39.130 4.92 4.92 40.64 2.71
1362 1432 3.390135 ACACACAAATGGTCTACTGTCG 58.610 45.455 0.00 0.00 0.00 4.35
1363 1433 5.065988 ACAAACACACAAATGGTCTACTGTC 59.934 40.000 0.00 0.00 0.00 3.51
1399 1474 0.608640 AACACAACACCCCGCAAAAA 59.391 45.000 0.00 0.00 0.00 1.94
1400 1475 0.608640 AAACACAACACCCCGCAAAA 59.391 45.000 0.00 0.00 0.00 2.44
1401 1476 0.608640 AAAACACAACACCCCGCAAA 59.391 45.000 0.00 0.00 0.00 3.68
1402 1477 0.108615 CAAAACACAACACCCCGCAA 60.109 50.000 0.00 0.00 0.00 4.85
1403 1478 1.251527 ACAAAACACAACACCCCGCA 61.252 50.000 0.00 0.00 0.00 5.69
1404 1479 0.804156 CACAAAACACAACACCCCGC 60.804 55.000 0.00 0.00 0.00 6.13
1405 1480 0.528470 ACACAAAACACAACACCCCG 59.472 50.000 0.00 0.00 0.00 5.73
1406 1481 3.018149 TCTACACAAAACACAACACCCC 58.982 45.455 0.00 0.00 0.00 4.95
1407 1482 4.911514 ATCTACACAAAACACAACACCC 57.088 40.909 0.00 0.00 0.00 4.61
1408 1483 7.871853 AGATAATCTACACAAAACACAACACC 58.128 34.615 0.00 0.00 0.00 4.16
1410 1485 9.214957 CCTAGATAATCTACACAAAACACAACA 57.785 33.333 0.00 0.00 0.00 3.33
1411 1486 9.216117 ACCTAGATAATCTACACAAAACACAAC 57.784 33.333 0.00 0.00 0.00 3.32
1412 1487 9.214957 CACCTAGATAATCTACACAAAACACAA 57.785 33.333 0.00 0.00 0.00 3.33
1427 1502 9.236006 CCAATTAAGCTTATGCACCTAGATAAT 57.764 33.333 7.08 0.00 42.74 1.28
1431 1508 6.001449 ACCAATTAAGCTTATGCACCTAGA 57.999 37.500 7.08 0.00 42.74 2.43
1454 1531 5.163602 GGGTGCAAATTAACGATGATGGTAA 60.164 40.000 0.00 0.00 0.00 2.85
1514 1672 1.078759 CTTGCTACGGCTGACCTTCG 61.079 60.000 0.00 0.00 39.59 3.79
1520 1678 2.126071 GTCGCTTGCTACGGCTGA 60.126 61.111 0.00 0.00 39.59 4.26
1522 1680 0.882927 TTTTGTCGCTTGCTACGGCT 60.883 50.000 0.44 0.00 39.59 5.52
1532 1690 1.586154 CCCGGAAGCATTTTGTCGCT 61.586 55.000 0.73 0.00 41.20 4.93
1538 1699 2.286365 TCAACTCCCGGAAGCATTTT 57.714 45.000 0.73 0.00 0.00 1.82
1549 1710 6.944234 ATCCGATCTTTATTTTCAACTCCC 57.056 37.500 0.00 0.00 0.00 4.30
1564 1725 8.651589 TCACCTACAATAAGAATATCCGATCT 57.348 34.615 0.00 0.00 0.00 2.75
1565 1726 9.522804 GATCACCTACAATAAGAATATCCGATC 57.477 37.037 0.00 0.00 0.00 3.69
1568 1729 8.744652 AGAGATCACCTACAATAAGAATATCCG 58.255 37.037 0.00 0.00 0.00 4.18
1577 1751 6.686378 GCATGTGGAGAGATCACCTACAATAA 60.686 42.308 2.09 0.00 34.46 1.40
1578 1752 5.221521 GCATGTGGAGAGATCACCTACAATA 60.222 44.000 2.09 0.00 34.46 1.90
1584 1758 1.576577 TGCATGTGGAGAGATCACCT 58.423 50.000 0.00 0.00 34.46 4.00
1607 1781 5.122869 AGTTGATAACCGATATGCATGCATC 59.877 40.000 35.35 22.45 37.82 3.91
1618 1792 7.762615 TCGAACTTTCAATAGTTGATAACCGAT 59.237 33.333 0.00 0.00 38.43 4.18
1620 1794 7.285783 TCGAACTTTCAATAGTTGATAACCG 57.714 36.000 0.00 0.00 38.43 4.44
1665 1839 9.661187 CTATTCATGTGAGAATTGATTACTTGC 57.339 33.333 0.00 0.00 38.97 4.01
1671 1852 9.842775 TCTTAGCTATTCATGTGAGAATTGATT 57.157 29.630 0.00 0.00 38.97 2.57
1689 1870 5.593502 GCTGGACTTACTAGGTTCTTAGCTA 59.406 44.000 0.00 0.00 33.36 3.32
1721 1902 8.579850 AAATGTCTAATTGGCACATCTAAAGA 57.420 30.769 7.13 0.00 39.30 2.52
1779 1982 3.196685 GCTAGTAGGATCATGATGGGGAC 59.803 52.174 14.30 5.78 0.00 4.46
1795 1998 3.639561 TGGCATTGATAAGGTCGCTAGTA 59.360 43.478 0.00 0.00 0.00 1.82
1801 2004 2.951642 ACCAATGGCATTGATAAGGTCG 59.048 45.455 35.39 20.61 42.83 4.79
1811 2014 2.762327 GTGGATCAGAACCAATGGCATT 59.238 45.455 6.96 6.96 39.22 3.56
1813 2016 1.075212 TGTGGATCAGAACCAATGGCA 59.925 47.619 0.00 0.00 39.22 4.92
1814 2017 1.838112 TGTGGATCAGAACCAATGGC 58.162 50.000 0.00 0.00 39.22 4.40
1815 2018 4.751060 CAAATGTGGATCAGAACCAATGG 58.249 43.478 0.00 0.00 39.22 3.16
1830 2036 7.013274 TGTTCTCCTACTTTCTTTCCAAATGTG 59.987 37.037 0.00 0.00 0.00 3.21
1834 2040 6.542370 CACTGTTCTCCTACTTTCTTTCCAAA 59.458 38.462 0.00 0.00 0.00 3.28
1839 2045 6.049790 GTGACACTGTTCTCCTACTTTCTTT 58.950 40.000 0.00 0.00 0.00 2.52
1843 2049 3.635373 TCGTGACACTGTTCTCCTACTTT 59.365 43.478 3.68 0.00 0.00 2.66
1856 2067 1.919240 TCCCACACTATCGTGACACT 58.081 50.000 4.10 0.00 43.97 3.55
1857 2068 2.736144 TTCCCACACTATCGTGACAC 57.264 50.000 4.10 0.00 43.97 3.67
1866 2077 1.196104 CCCCCGTCTTTCCCACACTA 61.196 60.000 0.00 0.00 0.00 2.74
1868 2079 2.033602 CCCCCGTCTTTCCCACAC 59.966 66.667 0.00 0.00 0.00 3.82
1876 2088 2.443416 GTCTTTTATTGCCCCCGTCTT 58.557 47.619 0.00 0.00 0.00 3.01
1879 2091 0.323999 GGGTCTTTTATTGCCCCCGT 60.324 55.000 0.00 0.00 35.18 5.28
1880 2092 0.323908 TGGGTCTTTTATTGCCCCCG 60.324 55.000 0.00 0.00 40.36 5.73
1885 2097 3.945285 TCCTCGATTGGGTCTTTTATTGC 59.055 43.478 0.00 0.00 0.00 3.56
1886 2098 4.576463 CCTCCTCGATTGGGTCTTTTATTG 59.424 45.833 0.00 0.00 0.00 1.90
1888 2100 3.136626 CCCTCCTCGATTGGGTCTTTTAT 59.863 47.826 8.78 0.00 36.32 1.40
1889 2101 2.504175 CCCTCCTCGATTGGGTCTTTTA 59.496 50.000 8.78 0.00 36.32 1.52
1905 2117 5.316987 CATGTTGTTATATCCCTTCCCTCC 58.683 45.833 0.00 0.00 0.00 4.30
1914 2126 5.415701 CCACATAGCCCATGTTGTTATATCC 59.584 44.000 0.00 0.00 46.01 2.59
1920 2132 2.603075 ACCACATAGCCCATGTTGTT 57.397 45.000 0.00 0.00 46.01 2.83
1922 2134 2.951642 CCTTACCACATAGCCCATGTTG 59.048 50.000 0.00 0.00 46.01 3.33
1964 2176 5.898120 TCCATATCCCTCTCCTCTTCTTAG 58.102 45.833 0.00 0.00 0.00 2.18
1965 2177 5.753541 GCTCCATATCCCTCTCCTCTTCTTA 60.754 48.000 0.00 0.00 0.00 2.10
1975 2187 5.805208 TGTCTATAGCTCCATATCCCTCT 57.195 43.478 0.00 0.00 0.00 3.69
1976 2188 9.989296 ATATATGTCTATAGCTCCATATCCCTC 57.011 37.037 16.26 0.00 33.69 4.30
2058 2270 0.603065 GGCCATCACACCCAAACTTC 59.397 55.000 0.00 0.00 0.00 3.01
2061 2273 0.755686 TTTGGCCATCACACCCAAAC 59.244 50.000 6.09 0.00 42.07 2.93
2081 2293 2.494073 GTCCCACAAACAAACTTCACCA 59.506 45.455 0.00 0.00 0.00 4.17
2089 2301 1.683917 CAATCGGGTCCCACAAACAAA 59.316 47.619 9.12 0.00 0.00 2.83
2092 2304 1.175983 TGCAATCGGGTCCCACAAAC 61.176 55.000 9.12 0.00 0.00 2.93
2095 2307 0.251564 AAATGCAATCGGGTCCCACA 60.252 50.000 9.12 0.00 0.00 4.17
2096 2308 0.894835 AAAATGCAATCGGGTCCCAC 59.105 50.000 9.12 0.00 0.00 4.61
2098 2310 2.481276 GCTAAAAATGCAATCGGGTCCC 60.481 50.000 0.00 0.00 0.00 4.46
2099 2311 2.481276 GGCTAAAAATGCAATCGGGTCC 60.481 50.000 0.00 0.00 0.00 4.46
2100 2312 2.481276 GGGCTAAAAATGCAATCGGGTC 60.481 50.000 0.00 0.00 0.00 4.46
2101 2313 1.480545 GGGCTAAAAATGCAATCGGGT 59.519 47.619 0.00 0.00 0.00 5.28
2102 2314 1.535860 CGGGCTAAAAATGCAATCGGG 60.536 52.381 0.00 0.00 0.00 5.14
2103 2315 1.134175 ACGGGCTAAAAATGCAATCGG 59.866 47.619 0.00 0.00 0.00 4.18
2104 2316 2.559998 ACGGGCTAAAAATGCAATCG 57.440 45.000 0.00 0.00 0.00 3.34
2105 2317 5.810074 ACATAAACGGGCTAAAAATGCAATC 59.190 36.000 0.00 0.00 0.00 2.67
2106 2318 5.580297 CACATAAACGGGCTAAAAATGCAAT 59.420 36.000 0.00 0.00 0.00 3.56
2107 2319 4.926238 CACATAAACGGGCTAAAAATGCAA 59.074 37.500 0.00 0.00 0.00 4.08
2108 2320 4.021894 ACACATAAACGGGCTAAAAATGCA 60.022 37.500 0.00 0.00 0.00 3.96
2110 2322 4.862018 CCACACATAAACGGGCTAAAAATG 59.138 41.667 0.00 0.00 0.00 2.32
2111 2323 4.081917 CCCACACATAAACGGGCTAAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
2113 2325 2.820787 CCCACACATAAACGGGCTAAAA 59.179 45.455 0.00 0.00 0.00 1.52
2114 2326 2.438411 CCCACACATAAACGGGCTAAA 58.562 47.619 0.00 0.00 0.00 1.85
2115 2327 1.340211 CCCCACACATAAACGGGCTAA 60.340 52.381 0.00 0.00 37.36 3.09
2116 2328 0.253610 CCCCACACATAAACGGGCTA 59.746 55.000 0.00 0.00 37.36 3.93
2118 2330 0.896479 AACCCCACACATAAACGGGC 60.896 55.000 0.00 0.00 37.25 6.13
2119 2331 0.885196 CAACCCCACACATAAACGGG 59.115 55.000 0.00 0.00 39.85 5.28
2122 3148 0.606096 GCCCAACCCCACACATAAAC 59.394 55.000 0.00 0.00 0.00 2.01
2123 3149 0.188587 TGCCCAACCCCACACATAAA 59.811 50.000 0.00 0.00 0.00 1.40
2125 3151 1.382240 CTGCCCAACCCCACACATA 59.618 57.895 0.00 0.00 0.00 2.29
2128 3154 2.597510 GACTGCCCAACCCCACAC 60.598 66.667 0.00 0.00 0.00 3.82
2129 3155 3.099841 TGACTGCCCAACCCCACA 61.100 61.111 0.00 0.00 0.00 4.17
2132 3158 0.681243 GAATCTGACTGCCCAACCCC 60.681 60.000 0.00 0.00 0.00 4.95
2136 3162 1.741401 CGCGAATCTGACTGCCCAA 60.741 57.895 0.00 0.00 0.00 4.12
2141 3167 2.093783 GGGTTAAACGCGAATCTGACTG 59.906 50.000 15.93 0.00 0.00 3.51
2144 3170 2.343101 CTGGGTTAAACGCGAATCTGA 58.657 47.619 15.93 0.00 33.25 3.27
2145 3171 1.396996 CCTGGGTTAAACGCGAATCTG 59.603 52.381 15.93 0.00 33.25 2.90
2146 3172 1.734163 CCTGGGTTAAACGCGAATCT 58.266 50.000 15.93 0.00 33.25 2.40
2151 3177 0.386731 CTTTGCCTGGGTTAAACGCG 60.387 55.000 3.53 3.53 33.25 6.01
2152 3178 0.666274 GCTTTGCCTGGGTTAAACGC 60.666 55.000 0.00 0.00 0.00 4.84
2153 3179 0.386731 CGCTTTGCCTGGGTTAAACG 60.387 55.000 0.00 0.00 0.00 3.60
2156 3182 1.241315 GCTCGCTTTGCCTGGGTTAA 61.241 55.000 0.00 0.00 0.00 2.01
2157 3183 1.674322 GCTCGCTTTGCCTGGGTTA 60.674 57.895 0.00 0.00 0.00 2.85
2158 3184 2.985847 GCTCGCTTTGCCTGGGTT 60.986 61.111 0.00 0.00 0.00 4.11
2162 3188 2.406452 AAAACCGCTCGCTTTGCCTG 62.406 55.000 0.00 0.00 0.00 4.85
2165 3191 1.008995 TGAAAACCGCTCGCTTTGC 60.009 52.632 0.00 0.00 0.00 3.68
2166 3192 0.028770 TGTGAAAACCGCTCGCTTTG 59.971 50.000 0.00 0.00 0.00 2.77
2168 3194 0.814010 AGTGTGAAAACCGCTCGCTT 60.814 50.000 0.00 0.00 0.00 4.68
2169 3195 0.814010 AAGTGTGAAAACCGCTCGCT 60.814 50.000 0.00 0.00 0.00 4.93
2170 3196 0.657368 CAAGTGTGAAAACCGCTCGC 60.657 55.000 0.00 0.00 0.00 5.03
2171 3197 0.041312 CCAAGTGTGAAAACCGCTCG 60.041 55.000 0.00 0.00 0.00 5.03
2172 3198 1.021968 ACCAAGTGTGAAAACCGCTC 58.978 50.000 0.00 0.00 0.00 5.03
2173 3199 2.218603 CTACCAAGTGTGAAAACCGCT 58.781 47.619 0.00 0.00 0.00 5.52
2175 3201 4.625972 AAACTACCAAGTGTGAAAACCG 57.374 40.909 0.00 0.00 35.62 4.44
2214 3240 4.271661 TGTCCCGAAAACTACCACTTTTT 58.728 39.130 0.00 0.00 0.00 1.94
2215 3241 3.888583 TGTCCCGAAAACTACCACTTTT 58.111 40.909 0.00 0.00 0.00 2.27
2216 3242 3.564053 TGTCCCGAAAACTACCACTTT 57.436 42.857 0.00 0.00 0.00 2.66
2217 3243 3.564053 TTGTCCCGAAAACTACCACTT 57.436 42.857 0.00 0.00 0.00 3.16
2218 3244 3.564053 TTTGTCCCGAAAACTACCACT 57.436 42.857 0.00 0.00 0.00 4.00
2220 3246 3.499157 CGATTTTGTCCCGAAAACTACCA 59.501 43.478 0.00 0.00 0.00 3.25
2221 3247 3.499537 ACGATTTTGTCCCGAAAACTACC 59.500 43.478 0.00 0.00 0.00 3.18
2224 3250 5.297527 ACTTTACGATTTTGTCCCGAAAACT 59.702 36.000 0.00 0.00 0.00 2.66
2226 3252 5.505985 CCACTTTACGATTTTGTCCCGAAAA 60.506 40.000 0.00 0.00 0.00 2.29
2228 3254 3.499157 CCACTTTACGATTTTGTCCCGAA 59.501 43.478 0.00 0.00 0.00 4.30
2229 3255 3.068560 CCACTTTACGATTTTGTCCCGA 58.931 45.455 0.00 0.00 0.00 5.14
2230 3256 2.809696 ACCACTTTACGATTTTGTCCCG 59.190 45.455 0.00 0.00 0.00 5.14
2231 3257 4.999311 ACTACCACTTTACGATTTTGTCCC 59.001 41.667 0.00 0.00 0.00 4.46
2232 3258 6.549912 AACTACCACTTTACGATTTTGTCC 57.450 37.500 0.00 0.00 0.00 4.02
2233 3259 8.340443 AGAAAACTACCACTTTACGATTTTGTC 58.660 33.333 0.00 0.00 0.00 3.18
2234 3260 8.126700 CAGAAAACTACCACTTTACGATTTTGT 58.873 33.333 0.00 0.00 0.00 2.83
2235 3261 8.126700 ACAGAAAACTACCACTTTACGATTTTG 58.873 33.333 0.00 0.00 0.00 2.44
2236 3262 8.217131 ACAGAAAACTACCACTTTACGATTTT 57.783 30.769 0.00 0.00 0.00 1.82
2237 3263 7.496591 TGACAGAAAACTACCACTTTACGATTT 59.503 33.333 0.00 0.00 0.00 2.17
2238 3264 6.987992 TGACAGAAAACTACCACTTTACGATT 59.012 34.615 0.00 0.00 0.00 3.34
2239 3265 6.423001 GTGACAGAAAACTACCACTTTACGAT 59.577 38.462 0.00 0.00 0.00 3.73
2241 3267 5.332055 CGTGACAGAAAACTACCACTTTACG 60.332 44.000 0.00 0.00 0.00 3.18
2242 3268 5.521372 ACGTGACAGAAAACTACCACTTTAC 59.479 40.000 0.00 0.00 0.00 2.01
2243 3269 5.663456 ACGTGACAGAAAACTACCACTTTA 58.337 37.500 0.00 0.00 0.00 1.85
2244 3270 4.510571 ACGTGACAGAAAACTACCACTTT 58.489 39.130 0.00 0.00 0.00 2.66
2245 3271 4.133013 ACGTGACAGAAAACTACCACTT 57.867 40.909 0.00 0.00 0.00 3.16
2247 3273 4.260497 GGAAACGTGACAGAAAACTACCAC 60.260 45.833 0.00 0.00 0.00 4.16
2249 3275 4.463515 GGAAACGTGACAGAAAACTACC 57.536 45.455 0.00 0.00 0.00 3.18
2266 3523 2.172851 ACTACCACAATTCGCGGAAA 57.827 45.000 6.13 0.00 0.00 3.13
2270 3527 2.977169 CCAAAAACTACCACAATTCGCG 59.023 45.455 0.00 0.00 0.00 5.87
2271 3528 3.972403 ACCAAAAACTACCACAATTCGC 58.028 40.909 0.00 0.00 0.00 4.70
2272 3529 7.988904 TTTAACCAAAAACTACCACAATTCG 57.011 32.000 0.00 0.00 0.00 3.34
2277 3534 8.983702 AGAGTATTTAACCAAAAACTACCACA 57.016 30.769 0.00 0.00 0.00 4.17
2605 3973 2.038557 ACGGTTGATTGGTTAGAGCTGT 59.961 45.455 0.00 0.00 0.00 4.40
2647 4015 0.247458 GGTCACGTACGTACTCTCGC 60.247 60.000 22.34 9.29 0.00 5.03
2687 4056 3.110293 TGTTATCCCTTCTCTTCCCGA 57.890 47.619 0.00 0.00 0.00 5.14
2722 4092 7.285858 AGGGAGATCAGTTGTATAGTGAGTAAC 59.714 40.741 0.00 0.00 39.51 2.50
2739 4109 4.040047 ACAACATACATGGAGGGAGATCA 58.960 43.478 0.00 0.00 0.00 2.92
2741 4111 5.608437 ACATACAACATACATGGAGGGAGAT 59.392 40.000 0.00 0.00 0.00 2.75
2746 4121 8.421784 AGTAAGTACATACAACATACATGGAGG 58.578 37.037 10.63 0.00 0.00 4.30
2830 4205 9.760926 AGGGCGACTATATATGTATCATATCAT 57.239 33.333 5.66 0.00 0.00 2.45
2831 4206 9.588096 AAGGGCGACTATATATGTATCATATCA 57.412 33.333 5.66 0.00 0.00 2.15
2832 4207 9.847706 CAAGGGCGACTATATATGTATCATATC 57.152 37.037 5.66 0.00 0.00 1.63
2853 4228 7.868415 TCAATTTAAACGACCAAATTACAAGGG 59.132 33.333 0.00 0.00 33.66 3.95
2941 4318 5.836821 AGGTGTTTTTCCTTGTTTCTCTC 57.163 39.130 0.00 0.00 30.18 3.20
2942 4319 6.318900 CACTAGGTGTTTTTCCTTGTTTCTCT 59.681 38.462 0.00 0.00 38.53 3.10
3019 4401 1.550327 TTTGTGCACCAAACTGACCA 58.450 45.000 15.69 0.00 38.12 4.02
3093 4475 2.816083 CCACGCGCGGGAAATGTA 60.816 61.111 37.25 0.00 0.00 2.29
3104 4486 1.134487 CAGCAAATACACCCACGCG 59.866 57.895 3.53 3.53 0.00 6.01
3105 4487 1.154035 GCAGCAAATACACCCACGC 60.154 57.895 0.00 0.00 0.00 5.34
3151 4534 1.611673 GCACTAGCCACTGACAATGGT 60.612 52.381 4.61 0.00 39.63 3.55
3215 4598 4.974368 TTGTTGGAGTGGTTTTGTACAG 57.026 40.909 0.00 0.00 0.00 2.74
3326 4712 3.596214 AGGTCGTTAGTGCCATTACAAG 58.404 45.455 0.00 0.00 0.00 3.16
3337 4723 2.318908 TGTGGTGGTTAGGTCGTTAGT 58.681 47.619 0.00 0.00 0.00 2.24
3403 4789 8.547967 TCAGAATGTGTACTTTTATCCAAGAC 57.452 34.615 0.00 0.00 37.40 3.01
3483 4869 7.367159 TCTTTCGAACAAATTAGCGGAAATA 57.633 32.000 0.00 0.00 0.00 1.40
3493 4879 9.719279 TGTACGTAATTTTCTTTCGAACAAATT 57.281 25.926 18.68 18.68 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.