Multiple sequence alignment - TraesCS1A01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G348000 chr1A 100.000 2712 0 0 1 2712 533470081 533467370 0.000000e+00 5009.0
1 TraesCS1A01G348000 chr1D 86.298 2350 164 76 1 2280 436218186 436215925 0.000000e+00 2410.0
2 TraesCS1A01G348000 chr1D 95.417 240 10 1 2473 2712 436215747 436215509 5.480000e-102 381.0
3 TraesCS1A01G348000 chr1B 86.614 1524 95 57 578 2042 591235448 591233975 0.000000e+00 1583.0
4 TraesCS1A01G348000 chr1B 83.897 503 50 15 104 602 591235949 591235474 4.120000e-123 451.0
5 TraesCS1A01G348000 chr5B 80.617 227 37 5 1 222 95856566 95856790 4.640000e-38 169.0
6 TraesCS1A01G348000 chr7B 92.857 42 3 0 220 261 503093092 503093133 8.110000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G348000 chr1A 533467370 533470081 2711 True 5009.0 5009 100.0000 1 2712 1 chr1A.!!$R1 2711
1 TraesCS1A01G348000 chr1D 436215509 436218186 2677 True 1395.5 2410 90.8575 1 2712 2 chr1D.!!$R1 2711
2 TraesCS1A01G348000 chr1B 591233975 591235949 1974 True 1017.0 1583 85.2555 104 2042 2 chr1B.!!$R1 1938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
460 465 0.033366 GCGCAGTTGGGGATTTTGTT 59.967 50.0 0.3 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2113 0.249447 TTGCTGGATCCATACTCGCG 60.249 55.0 16.63 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.281070 ACACAGGAGCTGCAACCG 60.281 61.111 8.35 4.62 34.37 4.44
75 76 2.341257 CGCACACTACAGAAGCTTCAT 58.659 47.619 27.57 17.40 0.00 2.57
83 84 5.064452 CACTACAGAAGCTTCATCCATGTTC 59.936 44.000 27.57 0.00 0.00 3.18
88 89 0.810648 GCTTCATCCATGTTCGCCAA 59.189 50.000 0.00 0.00 0.00 4.52
89 90 1.202222 GCTTCATCCATGTTCGCCAAG 60.202 52.381 0.00 0.00 0.00 3.61
90 91 0.810648 TTCATCCATGTTCGCCAAGC 59.189 50.000 0.00 0.00 0.00 4.01
92 93 2.114670 ATCCATGTTCGCCAAGCCG 61.115 57.895 0.00 0.00 0.00 5.52
93 94 2.535485 ATCCATGTTCGCCAAGCCGA 62.535 55.000 0.00 0.00 35.09 5.54
126 128 1.866601 CATCATCGGCGAATGCTACAA 59.133 47.619 15.93 0.00 42.25 2.41
127 129 2.017138 TCATCGGCGAATGCTACAAA 57.983 45.000 15.93 0.00 42.25 2.83
144 146 2.116366 CAAACGTACACTGCAAAAGCC 58.884 47.619 0.00 0.00 0.00 4.35
160 162 3.487202 CCACATCCACGTTCGCCG 61.487 66.667 0.00 0.00 44.03 6.46
187 189 2.478746 CCGTTTCGGCGATGGTTG 59.521 61.111 11.76 0.00 41.17 3.77
188 190 2.322081 CCGTTTCGGCGATGGTTGT 61.322 57.895 11.76 0.00 41.17 3.32
197 201 2.869801 CGGCGATGGTTGTAATGTATGT 59.130 45.455 0.00 0.00 0.00 2.29
203 207 3.004171 TGGTTGTAATGTATGTCGGTGC 58.996 45.455 0.00 0.00 0.00 5.01
272 276 2.047655 CAACCGACGCCCTTGCTA 60.048 61.111 0.00 0.00 34.43 3.49
282 286 1.003839 CCCTTGCTACAACCAGCGA 60.004 57.895 0.00 0.00 44.88 4.93
377 382 3.327404 GGGGACTTCGGCCTTCCA 61.327 66.667 0.00 0.00 0.00 3.53
406 411 3.231889 ATGGCTGGCGGCGATCTAG 62.232 63.158 12.98 1.62 42.94 2.43
440 445 2.515071 GGGGAGGCGAGAGATGCAT 61.515 63.158 0.00 0.00 0.00 3.96
444 449 4.010414 GGCGAGAGATGCATGCGC 62.010 66.667 14.09 18.74 46.20 6.09
458 463 0.247185 ATGCGCAGTTGGGGATTTTG 59.753 50.000 18.32 0.00 35.65 2.44
459 464 1.112315 TGCGCAGTTGGGGATTTTGT 61.112 50.000 5.66 0.00 0.00 2.83
460 465 0.033366 GCGCAGTTGGGGATTTTGTT 59.967 50.000 0.30 0.00 0.00 2.83
461 466 1.540146 GCGCAGTTGGGGATTTTGTTT 60.540 47.619 0.30 0.00 0.00 2.83
462 467 2.832563 CGCAGTTGGGGATTTTGTTTT 58.167 42.857 0.00 0.00 0.00 2.43
463 468 2.799978 CGCAGTTGGGGATTTTGTTTTC 59.200 45.455 0.00 0.00 0.00 2.29
464 469 3.138304 GCAGTTGGGGATTTTGTTTTCC 58.862 45.455 0.00 0.00 0.00 3.13
470 475 2.766313 GGGATTTTGTTTTCCCTGTGC 58.234 47.619 0.63 0.00 46.91 4.57
471 476 2.403259 GGATTTTGTTTTCCCTGTGCG 58.597 47.619 0.00 0.00 0.00 5.34
472 477 2.223947 GGATTTTGTTTTCCCTGTGCGT 60.224 45.455 0.00 0.00 0.00 5.24
473 478 3.453424 GATTTTGTTTTCCCTGTGCGTT 58.547 40.909 0.00 0.00 0.00 4.84
474 479 2.285827 TTTGTTTTCCCTGTGCGTTG 57.714 45.000 0.00 0.00 0.00 4.10
481 486 2.338620 CCTGTGCGTTGACCGAGA 59.661 61.111 0.00 0.00 39.56 4.04
496 502 2.043852 AGAGGGTCGGCGTGAGAT 60.044 61.111 6.85 0.00 0.00 2.75
503 509 1.488527 GTCGGCGTGAGATATGGTTC 58.511 55.000 6.85 0.00 0.00 3.62
514 520 2.311542 AGATATGGTTCAGTTTGGGCCA 59.688 45.455 0.00 0.00 0.00 5.36
520 526 0.400213 TTCAGTTTGGGCCAGTCGAT 59.600 50.000 6.23 0.00 0.00 3.59
581 594 3.189287 CCTCGGACTTTCAATGGTTTCAG 59.811 47.826 0.00 0.00 0.00 3.02
587 600 3.181476 ACTTTCAATGGTTTCAGTGGTGC 60.181 43.478 0.00 0.00 39.23 5.01
621 689 9.695526 TTTTATTGAGAAGATTCAATGGTGTTG 57.304 29.630 10.58 0.00 45.00 3.33
684 785 3.058160 CTGGCGTTTGGGCTCTGG 61.058 66.667 0.00 0.00 42.84 3.86
685 786 4.659172 TGGCGTTTGGGCTCTGGG 62.659 66.667 0.00 0.00 42.84 4.45
690 791 1.676967 GTTTGGGCTCTGGGCTCTG 60.677 63.158 0.00 0.00 43.07 3.35
691 792 1.847506 TTTGGGCTCTGGGCTCTGA 60.848 57.895 0.00 0.00 43.07 3.27
692 793 1.426251 TTTGGGCTCTGGGCTCTGAA 61.426 55.000 0.00 0.00 43.07 3.02
693 794 1.210204 TTGGGCTCTGGGCTCTGAAT 61.210 55.000 0.00 0.00 43.07 2.57
694 795 1.153005 GGGCTCTGGGCTCTGAATG 60.153 63.158 0.00 0.00 38.65 2.67
695 796 1.823041 GGCTCTGGGCTCTGAATGC 60.823 63.158 0.00 0.00 41.46 3.56
703 804 2.671070 CTCTGAATGCCCGTGGGT 59.329 61.111 6.82 0.00 37.65 4.51
767 874 1.136984 CGTCGACTCTTTCTCGGGG 59.863 63.158 14.70 0.00 0.00 5.73
918 1038 1.616327 CTCACCCATCCTCCCCACA 60.616 63.158 0.00 0.00 0.00 4.17
921 1041 2.238701 ACCCATCCTCCCCACAACC 61.239 63.158 0.00 0.00 0.00 3.77
924 1044 3.015145 ATCCTCCCCACAACCCCG 61.015 66.667 0.00 0.00 0.00 5.73
956 1094 4.851214 GCTCCCCTCTCCTCGCCT 62.851 72.222 0.00 0.00 0.00 5.52
980 1118 2.910479 CCCGTCGATCCATCCCGA 60.910 66.667 0.00 0.00 0.00 5.14
981 1119 2.645567 CCGTCGATCCATCCCGAG 59.354 66.667 0.00 0.00 35.31 4.63
982 1120 2.049985 CGTCGATCCATCCCGAGC 60.050 66.667 0.00 0.00 35.31 5.03
983 1121 2.556459 CGTCGATCCATCCCGAGCT 61.556 63.158 0.00 0.00 35.31 4.09
984 1122 1.287503 GTCGATCCATCCCGAGCTC 59.712 63.158 2.73 2.73 35.31 4.09
985 1123 2.256764 CGATCCATCCCGAGCTCG 59.743 66.667 29.06 29.06 39.44 5.03
986 1124 2.556459 CGATCCATCCCGAGCTCGT 61.556 63.158 32.41 14.06 37.74 4.18
987 1125 1.287503 GATCCATCCCGAGCTCGTC 59.712 63.158 32.41 18.61 37.74 4.20
988 1126 2.148558 GATCCATCCCGAGCTCGTCC 62.149 65.000 32.41 9.84 37.74 4.79
989 1127 3.917760 CCATCCCGAGCTCGTCCC 61.918 72.222 32.41 0.00 37.74 4.46
1080 1218 4.736896 GCCAGGGACCACGTCGTC 62.737 72.222 4.56 4.56 32.65 4.20
1200 1338 4.679412 GGTAACAAACCGCTCCGA 57.321 55.556 0.00 0.00 38.88 4.55
1201 1339 2.156542 GGTAACAAACCGCTCCGAC 58.843 57.895 0.00 0.00 38.88 4.79
1202 1340 0.320160 GGTAACAAACCGCTCCGACT 60.320 55.000 0.00 0.00 38.88 4.18
1203 1341 1.505425 GTAACAAACCGCTCCGACTT 58.495 50.000 0.00 0.00 0.00 3.01
1205 1343 1.219522 AACAAACCGCTCCGACTTCG 61.220 55.000 0.00 0.00 39.44 3.79
1206 1344 1.663702 CAAACCGCTCCGACTTCGT 60.664 57.895 0.00 0.00 37.74 3.85
1209 1347 0.531311 AACCGCTCCGACTTCGTTTT 60.531 50.000 0.00 0.00 37.74 2.43
1210 1348 0.942884 ACCGCTCCGACTTCGTTTTC 60.943 55.000 0.00 0.00 37.74 2.29
1211 1349 0.942410 CCGCTCCGACTTCGTTTTCA 60.942 55.000 0.00 0.00 37.74 2.69
1212 1350 1.068474 CGCTCCGACTTCGTTTTCAT 58.932 50.000 0.00 0.00 37.74 2.57
1216 1354 3.245519 GCTCCGACTTCGTTTTCATATCC 59.754 47.826 0.00 0.00 37.74 2.59
1218 1356 5.080969 TCCGACTTCGTTTTCATATCCTT 57.919 39.130 0.00 0.00 37.74 3.36
1220 1358 5.579511 TCCGACTTCGTTTTCATATCCTTTC 59.420 40.000 0.00 0.00 37.74 2.62
1221 1359 5.350365 CCGACTTCGTTTTCATATCCTTTCA 59.650 40.000 0.00 0.00 37.74 2.69
1222 1360 6.455646 CCGACTTCGTTTTCATATCCTTTCAG 60.456 42.308 0.00 0.00 37.74 3.02
1223 1361 6.090898 CGACTTCGTTTTCATATCCTTTCAGT 59.909 38.462 0.00 0.00 34.11 3.41
1224 1362 7.360101 CGACTTCGTTTTCATATCCTTTCAGTT 60.360 37.037 0.00 0.00 34.11 3.16
1226 1364 8.076178 ACTTCGTTTTCATATCCTTTCAGTTTG 58.924 33.333 0.00 0.00 0.00 2.93
1227 1365 7.504924 TCGTTTTCATATCCTTTCAGTTTGT 57.495 32.000 0.00 0.00 0.00 2.83
1228 1366 7.359595 TCGTTTTCATATCCTTTCAGTTTGTG 58.640 34.615 0.00 0.00 0.00 3.33
1230 1368 7.113404 CGTTTTCATATCCTTTCAGTTTGTGTG 59.887 37.037 0.00 0.00 0.00 3.82
1231 1369 7.581213 TTTCATATCCTTTCAGTTTGTGTGT 57.419 32.000 0.00 0.00 0.00 3.72
1232 1370 8.684386 TTTCATATCCTTTCAGTTTGTGTGTA 57.316 30.769 0.00 0.00 0.00 2.90
1233 1371 8.684386 TTCATATCCTTTCAGTTTGTGTGTAA 57.316 30.769 0.00 0.00 0.00 2.41
1234 1372 8.862325 TCATATCCTTTCAGTTTGTGTGTAAT 57.138 30.769 0.00 0.00 0.00 1.89
1235 1373 9.295825 TCATATCCTTTCAGTTTGTGTGTAATT 57.704 29.630 0.00 0.00 0.00 1.40
1239 1377 7.802738 TCCTTTCAGTTTGTGTGTAATTATCG 58.197 34.615 0.00 0.00 0.00 2.92
1240 1378 6.523201 CCTTTCAGTTTGTGTGTAATTATCGC 59.477 38.462 0.00 0.00 0.00 4.58
1241 1379 5.539582 TCAGTTTGTGTGTAATTATCGCC 57.460 39.130 0.00 0.00 0.00 5.54
1242 1380 5.242434 TCAGTTTGTGTGTAATTATCGCCT 58.758 37.500 0.00 0.00 0.00 5.52
1255 1393 0.523966 ATCGCCTTCCTCGATCGATC 59.476 55.000 19.78 15.68 42.28 3.69
1258 1396 0.671251 GCCTTCCTCGATCGATCTGT 59.329 55.000 19.78 0.00 0.00 3.41
1260 1398 2.860582 GCCTTCCTCGATCGATCTGTTC 60.861 54.545 19.78 3.65 0.00 3.18
1266 1404 3.005261 CCTCGATCGATCTGTTCCTTGAT 59.995 47.826 19.78 0.00 0.00 2.57
1269 1407 5.043903 TCGATCGATCTGTTCCTTGATTTC 58.956 41.667 22.43 0.00 0.00 2.17
1270 1408 5.046529 CGATCGATCTGTTCCTTGATTTCT 58.953 41.667 22.43 0.00 0.00 2.52
1272 1410 6.697455 CGATCGATCTGTTCCTTGATTTCTTA 59.303 38.462 22.43 0.00 0.00 2.10
1273 1411 7.306283 CGATCGATCTGTTCCTTGATTTCTTAC 60.306 40.741 22.43 0.00 0.00 2.34
1274 1412 5.805486 TCGATCTGTTCCTTGATTTCTTACG 59.195 40.000 0.00 0.00 0.00 3.18
1275 1413 5.500931 CGATCTGTTCCTTGATTTCTTACGC 60.501 44.000 0.00 0.00 0.00 4.42
1287 1438 6.842163 TGATTTCTTACGCTTTCTTTGGATC 58.158 36.000 0.00 0.00 0.00 3.36
1288 1439 5.622770 TTTCTTACGCTTTCTTTGGATCC 57.377 39.130 4.20 4.20 0.00 3.36
1291 1442 0.676782 ACGCTTTCTTTGGATCCCCG 60.677 55.000 9.90 0.00 34.29 5.73
1720 1871 2.495084 GTTGGGTTCTGAGTTCCTGTC 58.505 52.381 0.00 0.00 0.00 3.51
1722 1873 0.680061 GGGTTCTGAGTTCCTGTCGT 59.320 55.000 0.00 0.00 0.00 4.34
1725 1876 1.527311 GTTCTGAGTTCCTGTCGTTGC 59.473 52.381 0.00 0.00 0.00 4.17
1730 1881 2.288825 TGAGTTCCTGTCGTTGCTTAGG 60.289 50.000 0.00 0.00 0.00 2.69
1731 1882 1.968493 AGTTCCTGTCGTTGCTTAGGA 59.032 47.619 0.00 0.00 37.55 2.94
1732 1883 2.567615 AGTTCCTGTCGTTGCTTAGGAT 59.432 45.455 0.00 0.00 38.98 3.24
1733 1884 2.930682 GTTCCTGTCGTTGCTTAGGATC 59.069 50.000 0.00 0.00 38.98 3.36
1764 1915 5.612688 AGGGAGGATTATTTGATTAGGCTCA 59.387 40.000 0.00 0.00 0.00 4.26
1787 1938 8.815565 TCAAGTTATTATGGGCATTGTTAAGA 57.184 30.769 0.00 0.00 0.00 2.10
1834 1985 7.171653 TCTGTCTGTAGAAGAAGAGAAGATGA 58.828 38.462 0.00 0.00 36.40 2.92
1848 2002 3.376546 AGAAGATGATTTCTTTCTGGCGC 59.623 43.478 0.00 0.00 44.88 6.53
1880 2034 8.890718 CATCGATCATAAATGGCAATATCTTCT 58.109 33.333 0.00 0.00 0.00 2.85
1961 2115 5.900339 TTCGTGATAAATAAGGTGATCGC 57.100 39.130 0.00 0.00 0.00 4.58
1962 2116 4.293729 CGTGATAAATAAGGTGATCGCG 57.706 45.455 0.00 0.00 43.34 5.87
1964 2118 5.502214 GTGATAAATAAGGTGATCGCGAG 57.498 43.478 16.66 0.00 0.00 5.03
1965 2119 4.982916 GTGATAAATAAGGTGATCGCGAGT 59.017 41.667 16.66 2.41 0.00 4.18
1966 2120 6.147581 GTGATAAATAAGGTGATCGCGAGTA 58.852 40.000 16.66 2.40 0.00 2.59
1967 2121 6.807230 GTGATAAATAAGGTGATCGCGAGTAT 59.193 38.462 16.66 0.00 0.00 2.12
2030 2202 9.154847 CAAGTCTGTAACTGATCAATTGATACA 57.845 33.333 20.75 18.17 38.58 2.29
2073 2245 1.078848 GCTACCACAGAGCACCAGG 60.079 63.158 0.00 0.00 39.84 4.45
2074 2246 1.544825 GCTACCACAGAGCACCAGGA 61.545 60.000 0.00 0.00 39.84 3.86
2082 2254 3.247648 AGCACCAGGAGCAGCAGT 61.248 61.111 11.90 0.00 0.00 4.40
2103 2275 3.839432 GGAGAAGAGGGTCGCCGG 61.839 72.222 0.00 0.00 0.00 6.13
2114 2286 1.594836 GTCGCCGGTGTGGTACAAA 60.595 57.895 16.01 0.00 44.16 2.83
2115 2287 0.952010 GTCGCCGGTGTGGTACAAAT 60.952 55.000 16.01 0.00 44.16 2.32
2129 2301 5.180680 GTGGTACAAATTTGAGTACTCCACC 59.819 44.000 24.64 15.52 44.16 4.61
2130 2302 5.163184 TGGTACAAATTTGAGTACTCCACCA 60.163 40.000 24.64 17.40 40.26 4.17
2131 2303 5.944007 GGTACAAATTTGAGTACTCCACCAT 59.056 40.000 24.64 4.15 40.26 3.55
2132 2304 6.433093 GGTACAAATTTGAGTACTCCACCATT 59.567 38.462 24.64 9.66 40.26 3.16
2133 2305 6.575162 ACAAATTTGAGTACTCCACCATTC 57.425 37.500 24.64 0.00 0.00 2.67
2134 2306 5.476945 ACAAATTTGAGTACTCCACCATTCC 59.523 40.000 24.64 0.00 0.00 3.01
2135 2307 4.927267 ATTTGAGTACTCCACCATTCCA 57.073 40.909 20.11 0.00 0.00 3.53
2203 2384 4.098044 TCCCAAACGTAATTGCAGAAACAA 59.902 37.500 0.00 0.00 0.00 2.83
2209 2390 4.023536 ACGTAATTGCAGAAACAACCGAAT 60.024 37.500 0.00 0.00 31.03 3.34
2211 2392 5.401079 CGTAATTGCAGAAACAACCGAATTT 59.599 36.000 0.00 0.00 31.03 1.82
2226 2431 7.118390 ACAACCGAATTTAATCAGAGTTCAGAG 59.882 37.037 0.00 0.00 0.00 3.35
2227 2432 6.936279 ACCGAATTTAATCAGAGTTCAGAGA 58.064 36.000 0.00 0.00 0.00 3.10
2229 2434 8.696374 ACCGAATTTAATCAGAGTTCAGAGATA 58.304 33.333 0.00 0.00 0.00 1.98
2236 2441 7.838079 AATCAGAGTTCAGAGATATACTGCT 57.162 36.000 4.97 0.00 35.61 4.24
2237 2442 6.875948 TCAGAGTTCAGAGATATACTGCTC 57.124 41.667 4.97 6.68 35.61 4.26
2238 2443 5.767665 TCAGAGTTCAGAGATATACTGCTCC 59.232 44.000 4.97 0.00 35.61 4.70
2239 2444 5.534278 CAGAGTTCAGAGATATACTGCTCCA 59.466 44.000 4.97 0.00 35.61 3.86
2240 2445 6.040278 CAGAGTTCAGAGATATACTGCTCCAA 59.960 42.308 4.97 0.00 35.61 3.53
2241 2446 6.782000 AGAGTTCAGAGATATACTGCTCCAAT 59.218 38.462 4.97 0.00 35.61 3.16
2242 2447 7.289782 AGAGTTCAGAGATATACTGCTCCAATT 59.710 37.037 4.97 0.00 35.61 2.32
2243 2448 7.800092 AGTTCAGAGATATACTGCTCCAATTT 58.200 34.615 4.97 0.00 35.61 1.82
2244 2449 7.930865 AGTTCAGAGATATACTGCTCCAATTTC 59.069 37.037 4.97 0.00 35.61 2.17
2245 2450 7.365497 TCAGAGATATACTGCTCCAATTTCA 57.635 36.000 4.97 0.00 35.61 2.69
2246 2451 7.795047 TCAGAGATATACTGCTCCAATTTCAA 58.205 34.615 4.97 0.00 35.61 2.69
2247 2452 7.930325 TCAGAGATATACTGCTCCAATTTCAAG 59.070 37.037 4.97 0.00 35.61 3.02
2248 2453 7.930325 CAGAGATATACTGCTCCAATTTCAAGA 59.070 37.037 0.00 0.00 0.00 3.02
2249 2454 8.489489 AGAGATATACTGCTCCAATTTCAAGAA 58.511 33.333 0.00 0.00 0.00 2.52
2250 2455 8.443953 AGATATACTGCTCCAATTTCAAGAAC 57.556 34.615 0.00 0.00 0.00 3.01
2251 2456 8.270744 AGATATACTGCTCCAATTTCAAGAACT 58.729 33.333 0.00 0.00 0.00 3.01
2252 2457 8.814038 ATATACTGCTCCAATTTCAAGAACTT 57.186 30.769 0.00 0.00 0.00 2.66
2253 2458 5.859205 ACTGCTCCAATTTCAAGAACTTT 57.141 34.783 0.00 0.00 0.00 2.66
2254 2459 6.225981 ACTGCTCCAATTTCAAGAACTTTT 57.774 33.333 0.00 0.00 0.00 2.27
2255 2460 7.346751 ACTGCTCCAATTTCAAGAACTTTTA 57.653 32.000 0.00 0.00 0.00 1.52
2256 2461 7.203218 ACTGCTCCAATTTCAAGAACTTTTAC 58.797 34.615 0.00 0.00 0.00 2.01
2257 2462 6.512297 TGCTCCAATTTCAAGAACTTTTACC 58.488 36.000 0.00 0.00 0.00 2.85
2258 2463 6.097554 TGCTCCAATTTCAAGAACTTTTACCA 59.902 34.615 0.00 0.00 0.00 3.25
2281 2486 9.791820 ACCACACACTTTTTGTACTTTTAATAC 57.208 29.630 0.00 0.00 35.67 1.89
2282 2487 9.790389 CCACACACTTTTTGTACTTTTAATACA 57.210 29.630 0.00 0.00 35.67 2.29
2301 2506 6.952773 ATACAAAAGTTGTTCTGGTTAGCA 57.047 33.333 0.00 0.00 42.22 3.49
2302 2507 5.852282 ACAAAAGTTGTTCTGGTTAGCAT 57.148 34.783 0.00 0.00 42.22 3.79
2303 2508 6.220726 ACAAAAGTTGTTCTGGTTAGCATT 57.779 33.333 0.00 0.00 42.22 3.56
2304 2509 6.639563 ACAAAAGTTGTTCTGGTTAGCATTT 58.360 32.000 0.00 0.00 42.22 2.32
2305 2510 6.756542 ACAAAAGTTGTTCTGGTTAGCATTTC 59.243 34.615 0.00 0.00 42.22 2.17
2306 2511 5.453567 AAGTTGTTCTGGTTAGCATTTCC 57.546 39.130 0.00 0.00 0.00 3.13
2307 2512 3.826729 AGTTGTTCTGGTTAGCATTTCCC 59.173 43.478 0.00 0.00 0.00 3.97
2309 2514 4.919774 TGTTCTGGTTAGCATTTCCCTA 57.080 40.909 0.00 0.00 0.00 3.53
2310 2515 4.585879 TGTTCTGGTTAGCATTTCCCTAC 58.414 43.478 0.00 0.00 0.00 3.18
2311 2516 3.926058 TCTGGTTAGCATTTCCCTACC 57.074 47.619 0.00 0.00 0.00 3.18
2312 2517 3.186283 TCTGGTTAGCATTTCCCTACCA 58.814 45.455 0.00 0.00 0.00 3.25
2313 2518 3.199946 TCTGGTTAGCATTTCCCTACCAG 59.800 47.826 11.79 11.79 43.35 4.00
2314 2519 2.241176 TGGTTAGCATTTCCCTACCAGG 59.759 50.000 0.00 0.00 34.30 4.45
2315 2520 2.508300 GGTTAGCATTTCCCTACCAGGA 59.492 50.000 0.00 0.00 37.67 3.86
2316 2521 3.053917 GGTTAGCATTTCCCTACCAGGAA 60.054 47.826 0.00 0.00 44.30 3.36
2326 2531 4.736473 TCCCTACCAGGAAAAGAAAAAGG 58.264 43.478 0.00 0.00 37.67 3.11
2328 2533 5.103430 TCCCTACCAGGAAAAGAAAAAGGAA 60.103 40.000 0.00 0.00 37.67 3.36
2329 2534 5.600898 CCCTACCAGGAAAAGAAAAAGGAAA 59.399 40.000 0.00 0.00 37.67 3.13
2330 2535 6.239317 CCCTACCAGGAAAAGAAAAAGGAAAG 60.239 42.308 0.00 0.00 37.67 2.62
2331 2536 5.614324 ACCAGGAAAAGAAAAAGGAAAGG 57.386 39.130 0.00 0.00 0.00 3.11
2332 2537 5.030147 ACCAGGAAAAGAAAAAGGAAAGGT 58.970 37.500 0.00 0.00 0.00 3.50
2333 2538 6.199376 ACCAGGAAAAGAAAAAGGAAAGGTA 58.801 36.000 0.00 0.00 0.00 3.08
2334 2539 6.323996 ACCAGGAAAAGAAAAAGGAAAGGTAG 59.676 38.462 0.00 0.00 0.00 3.18
2335 2540 6.216569 CAGGAAAAGAAAAAGGAAAGGTAGC 58.783 40.000 0.00 0.00 0.00 3.58
2336 2541 6.040955 CAGGAAAAGAAAAAGGAAAGGTAGCT 59.959 38.462 0.00 0.00 0.00 3.32
2337 2542 6.611642 AGGAAAAGAAAAAGGAAAGGTAGCTT 59.388 34.615 0.12 0.12 0.00 3.74
2338 2543 7.125811 AGGAAAAGAAAAAGGAAAGGTAGCTTT 59.874 33.333 19.41 19.41 0.00 3.51
2339 2544 7.769044 GGAAAAGAAAAAGGAAAGGTAGCTTTT 59.231 33.333 20.20 4.16 36.21 2.27
2340 2545 8.492673 AAAAGAAAAAGGAAAGGTAGCTTTTG 57.507 30.769 20.20 0.00 33.38 2.44
2342 2547 4.955811 AAAAGGAAAGGTAGCTTTTGGG 57.044 40.909 20.20 0.00 0.00 4.12
2344 2549 2.876581 AGGAAAGGTAGCTTTTGGGTG 58.123 47.619 20.20 0.00 0.00 4.61
2345 2550 1.893137 GGAAAGGTAGCTTTTGGGTGG 59.107 52.381 20.20 0.00 0.00 4.61
2346 2551 2.490168 GGAAAGGTAGCTTTTGGGTGGA 60.490 50.000 20.20 0.00 0.00 4.02
2347 2552 2.287977 AAGGTAGCTTTTGGGTGGAC 57.712 50.000 0.12 0.00 0.00 4.02
2348 2553 1.446016 AGGTAGCTTTTGGGTGGACT 58.554 50.000 0.00 0.00 0.00 3.85
2349 2554 1.780919 AGGTAGCTTTTGGGTGGACTT 59.219 47.619 0.00 0.00 0.00 3.01
2350 2555 2.177016 AGGTAGCTTTTGGGTGGACTTT 59.823 45.455 0.00 0.00 0.00 2.66
2351 2556 2.963101 GGTAGCTTTTGGGTGGACTTTT 59.037 45.455 0.00 0.00 0.00 2.27
2352 2557 4.141111 AGGTAGCTTTTGGGTGGACTTTTA 60.141 41.667 0.00 0.00 0.00 1.52
2353 2558 4.585581 GGTAGCTTTTGGGTGGACTTTTAA 59.414 41.667 0.00 0.00 0.00 1.52
2354 2559 5.245301 GGTAGCTTTTGGGTGGACTTTTAAT 59.755 40.000 0.00 0.00 0.00 1.40
2356 2561 5.610398 AGCTTTTGGGTGGACTTTTAATTG 58.390 37.500 0.00 0.00 0.00 2.32
2357 2562 5.130311 AGCTTTTGGGTGGACTTTTAATTGT 59.870 36.000 0.00 0.00 0.00 2.71
2359 2564 6.685368 GCTTTTGGGTGGACTTTTAATTGTCT 60.685 38.462 7.85 0.00 34.01 3.41
2360 2565 5.782893 TTGGGTGGACTTTTAATTGTCTG 57.217 39.130 7.85 0.00 34.01 3.51
2361 2566 5.055265 TGGGTGGACTTTTAATTGTCTGA 57.945 39.130 7.85 0.00 34.01 3.27
2362 2567 5.640147 TGGGTGGACTTTTAATTGTCTGAT 58.360 37.500 7.85 0.00 34.01 2.90
2363 2568 5.476599 TGGGTGGACTTTTAATTGTCTGATG 59.523 40.000 7.85 0.00 34.01 3.07
2364 2569 5.710099 GGGTGGACTTTTAATTGTCTGATGA 59.290 40.000 7.85 0.00 34.01 2.92
2365 2570 6.378280 GGGTGGACTTTTAATTGTCTGATGAT 59.622 38.462 7.85 0.00 34.01 2.45
2366 2571 7.253422 GGTGGACTTTTAATTGTCTGATGATG 58.747 38.462 7.85 0.00 34.01 3.07
2367 2572 6.749118 GTGGACTTTTAATTGTCTGATGATGC 59.251 38.462 7.85 0.00 34.01 3.91
2368 2573 6.433716 TGGACTTTTAATTGTCTGATGATGCA 59.566 34.615 0.00 0.00 34.01 3.96
2369 2574 6.971184 GGACTTTTAATTGTCTGATGATGCAG 59.029 38.462 0.00 0.00 37.24 4.41
2370 2575 7.362401 GGACTTTTAATTGTCTGATGATGCAGT 60.362 37.037 0.00 0.00 37.20 4.40
2372 2577 9.013229 ACTTTTAATTGTCTGATGATGCAGTTA 57.987 29.630 0.00 0.00 37.20 2.24
2378 2583 8.913487 ATTGTCTGATGATGCAGTTATATTCA 57.087 30.769 0.00 0.00 37.20 2.57
2379 2584 7.719778 TGTCTGATGATGCAGTTATATTCAC 57.280 36.000 0.00 0.00 37.20 3.18
2381 2586 7.225341 TGTCTGATGATGCAGTTATATTCACAC 59.775 37.037 0.00 0.00 37.20 3.82
2382 2587 7.440556 GTCTGATGATGCAGTTATATTCACACT 59.559 37.037 0.00 0.00 37.20 3.55
2383 2588 7.440255 TCTGATGATGCAGTTATATTCACACTG 59.560 37.037 0.00 0.00 40.86 3.66
2386 2591 6.877236 TGATGCAGTTATATTCACACTGAGA 58.123 36.000 5.82 0.00 40.43 3.27
2387 2592 6.982724 TGATGCAGTTATATTCACACTGAGAG 59.017 38.462 5.82 0.00 40.43 3.20
2389 2594 7.404671 TGCAGTTATATTCACACTGAGAGTA 57.595 36.000 5.82 0.00 40.43 2.59
2391 2596 7.093945 TGCAGTTATATTCACACTGAGAGTACA 60.094 37.037 5.82 0.00 40.43 2.90
2392 2597 7.923344 GCAGTTATATTCACACTGAGAGTACAT 59.077 37.037 5.82 0.00 40.43 2.29
2404 2609 9.973450 ACACTGAGAGTACATATATCATGTTTC 57.027 33.333 0.00 0.00 33.76 2.78
2405 2610 9.416794 CACTGAGAGTACATATATCATGTTTCC 57.583 37.037 0.00 0.00 33.76 3.13
2406 2611 9.373450 ACTGAGAGTACATATATCATGTTTCCT 57.627 33.333 0.00 0.00 33.76 3.36
2409 2614 9.646427 GAGAGTACATATATCATGTTTCCTTCC 57.354 37.037 0.00 0.00 33.76 3.46
2410 2615 9.386122 AGAGTACATATATCATGTTTCCTTCCT 57.614 33.333 0.00 0.00 33.76 3.36
2413 2618 9.220767 GTACATATATCATGTTTCCTTCCTTCC 57.779 37.037 0.00 0.00 33.76 3.46
2415 2620 5.630415 ATATCATGTTTCCTTCCTTCCGA 57.370 39.130 0.00 0.00 0.00 4.55
2416 2621 4.510167 ATCATGTTTCCTTCCTTCCGAT 57.490 40.909 0.00 0.00 0.00 4.18
2417 2622 4.301072 TCATGTTTCCTTCCTTCCGATT 57.699 40.909 0.00 0.00 0.00 3.34
2418 2623 4.009675 TCATGTTTCCTTCCTTCCGATTG 58.990 43.478 0.00 0.00 0.00 2.67
2419 2624 3.502123 TGTTTCCTTCCTTCCGATTGT 57.498 42.857 0.00 0.00 0.00 2.71
2420 2625 4.627284 TGTTTCCTTCCTTCCGATTGTA 57.373 40.909 0.00 0.00 0.00 2.41
2421 2626 4.575885 TGTTTCCTTCCTTCCGATTGTAG 58.424 43.478 0.00 0.00 0.00 2.74
2427 2632 1.486310 TCCTTCCGATTGTAGCAGCAT 59.514 47.619 0.00 0.00 0.00 3.79
2429 2634 2.554142 CTTCCGATTGTAGCAGCATCA 58.446 47.619 0.00 0.00 0.00 3.07
2430 2635 2.916702 TCCGATTGTAGCAGCATCAT 57.083 45.000 0.00 0.00 0.00 2.45
2431 2636 2.486918 TCCGATTGTAGCAGCATCATG 58.513 47.619 0.00 0.00 0.00 3.07
2432 2637 1.069432 CCGATTGTAGCAGCATCATGC 60.069 52.381 0.00 0.00 46.88 4.06
2461 2666 6.080648 AGGGACTTTTCGGTTTCAATTTAC 57.919 37.500 0.00 0.00 27.25 2.01
2462 2667 4.913345 GGGACTTTTCGGTTTCAATTTACG 59.087 41.667 0.00 0.00 0.00 3.18
2463 2668 5.277925 GGGACTTTTCGGTTTCAATTTACGA 60.278 40.000 0.00 0.00 0.00 3.43
2464 2669 5.849604 GGACTTTTCGGTTTCAATTTACGAG 59.150 40.000 0.00 0.00 34.85 4.18
2465 2670 5.209977 ACTTTTCGGTTTCAATTTACGAGC 58.790 37.500 0.00 0.00 34.85 5.03
2466 2671 4.815040 TTTCGGTTTCAATTTACGAGCA 57.185 36.364 0.00 0.00 34.85 4.26
2467 2672 3.799137 TCGGTTTCAATTTACGAGCAC 57.201 42.857 0.00 0.00 0.00 4.40
2468 2673 2.481185 TCGGTTTCAATTTACGAGCACC 59.519 45.455 0.00 0.00 0.00 5.01
2469 2674 2.413634 CGGTTTCAATTTACGAGCACCC 60.414 50.000 0.00 0.00 0.00 4.61
2470 2675 2.094906 GGTTTCAATTTACGAGCACCCC 60.095 50.000 0.00 0.00 0.00 4.95
2471 2676 1.444836 TTCAATTTACGAGCACCCCG 58.555 50.000 0.00 0.00 0.00 5.73
2472 2677 0.322322 TCAATTTACGAGCACCCCGT 59.678 50.000 0.00 0.00 43.26 5.28
2473 2678 1.549620 TCAATTTACGAGCACCCCGTA 59.450 47.619 0.00 0.00 40.95 4.02
2474 2679 2.028294 TCAATTTACGAGCACCCCGTAA 60.028 45.455 0.00 0.00 46.58 3.18
2476 2681 2.657297 TTACGAGCACCCCGTAAGT 58.343 52.632 0.00 0.00 44.40 2.24
2477 2682 1.832883 TTACGAGCACCCCGTAAGTA 58.167 50.000 0.00 0.00 44.40 2.24
2488 2693 5.737349 GCACCCCGTAAGTAATACCTAACTC 60.737 48.000 0.00 0.00 0.00 3.01
2492 2697 6.460676 CCCCGTAAGTAATACCTAACTCACAG 60.461 46.154 0.00 0.00 0.00 3.66
2574 2779 5.651387 GCTTTTGCTTTTCCTATCCTCTT 57.349 39.130 0.00 0.00 43.35 2.85
2585 2790 6.576662 TTCCTATCCTCTTGCTTATCTACG 57.423 41.667 0.00 0.00 0.00 3.51
2685 2890 9.421806 TCTAAAATGTTTTGCATTGATTGGTAG 57.578 29.630 1.16 0.00 46.29 3.18
2701 2906 1.813178 GGTAGCAAGCAAAACCTCCTC 59.187 52.381 0.00 0.00 0.00 3.71
2706 2911 2.223711 GCAAGCAAAACCTCCTCGAAAA 60.224 45.455 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.729882 GGTTATAGCATTCGCGACGATT 59.270 45.455 9.15 0.00 45.49 3.34
75 76 2.739849 TTCGGCTTGGCGAACATGGA 62.740 55.000 24.21 5.25 0.00 3.41
83 84 4.404654 GCTGGTTTCGGCTTGGCG 62.405 66.667 10.34 10.34 41.88 5.69
92 93 4.179579 GATGGCGCCGCTGGTTTC 62.180 66.667 23.90 5.88 0.00 2.78
144 146 3.487202 CCGGCGAACGTGGATGTG 61.487 66.667 9.30 0.00 42.24 3.21
160 162 2.556287 CGAAACGGTTGCAGCTCC 59.444 61.111 0.00 0.00 0.00 4.70
184 186 3.485216 GCAGCACCGACATACATTACAAC 60.485 47.826 0.00 0.00 0.00 3.32
186 188 2.276201 GCAGCACCGACATACATTACA 58.724 47.619 0.00 0.00 0.00 2.41
187 189 2.276201 TGCAGCACCGACATACATTAC 58.724 47.619 0.00 0.00 0.00 1.89
188 190 2.675844 GTTGCAGCACCGACATACATTA 59.324 45.455 0.00 0.00 0.00 1.90
203 207 3.470567 GCGTCGAGTCGGTTGCAG 61.471 66.667 13.54 0.00 0.00 4.41
246 250 3.000080 GCGTCGGTTGCAACTCTCG 62.000 63.158 27.64 25.60 0.00 4.04
272 276 2.661866 GTGCTCGTCGCTGGTTGT 60.662 61.111 0.00 0.00 40.11 3.32
315 319 4.988598 CGCCACCGGTTGCAGTCT 62.989 66.667 28.11 0.00 0.00 3.24
402 407 1.733041 GCTGCAACGCACGACTAGA 60.733 57.895 0.00 0.00 33.79 2.43
406 411 4.374702 CCTGCTGCAACGCACGAC 62.375 66.667 3.02 0.00 35.74 4.34
440 445 1.112315 ACAAAATCCCCAACTGCGCA 61.112 50.000 10.98 10.98 0.00 6.09
458 463 0.030235 GGTCAACGCACAGGGAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
459 464 1.440938 CGGTCAACGCACAGGGAAAA 61.441 55.000 0.00 0.00 34.82 2.29
460 465 1.890041 CGGTCAACGCACAGGGAAA 60.890 57.895 0.00 0.00 34.82 3.13
461 466 2.280524 CGGTCAACGCACAGGGAA 60.281 61.111 0.00 0.00 34.82 3.97
462 467 3.220999 CTCGGTCAACGCACAGGGA 62.221 63.158 0.00 0.00 43.86 4.20
463 468 2.738521 CTCGGTCAACGCACAGGG 60.739 66.667 0.00 0.00 43.86 4.45
464 469 1.734477 CTCTCGGTCAACGCACAGG 60.734 63.158 0.00 0.00 43.86 4.00
465 470 1.734477 CCTCTCGGTCAACGCACAG 60.734 63.158 0.00 0.00 43.86 3.66
466 471 2.338620 CCTCTCGGTCAACGCACA 59.661 61.111 0.00 0.00 43.86 4.57
467 472 2.432628 CCCTCTCGGTCAACGCAC 60.433 66.667 0.00 0.00 43.86 5.34
468 473 2.915659 ACCCTCTCGGTCAACGCA 60.916 61.111 0.00 0.00 43.58 5.24
481 486 1.464376 CCATATCTCACGCCGACCCT 61.464 60.000 0.00 0.00 0.00 4.34
488 493 3.063997 CCAAACTGAACCATATCTCACGC 59.936 47.826 0.00 0.00 0.00 5.34
489 494 3.623060 CCCAAACTGAACCATATCTCACG 59.377 47.826 0.00 0.00 0.00 4.35
491 496 3.620488 GCCCAAACTGAACCATATCTCA 58.380 45.455 0.00 0.00 0.00 3.27
496 502 1.427368 ACTGGCCCAAACTGAACCATA 59.573 47.619 0.00 0.00 0.00 2.74
503 509 1.361668 CGATCGACTGGCCCAAACTG 61.362 60.000 10.26 0.00 0.00 3.16
514 520 1.227764 TACTAGCCGCCGATCGACT 60.228 57.895 18.66 10.63 41.67 4.18
520 526 3.524606 GCCACTACTAGCCGCCGA 61.525 66.667 0.00 0.00 0.00 5.54
526 532 4.783764 AACAAAAATGGCCACTACTAGC 57.216 40.909 8.16 0.00 0.00 3.42
602 615 4.771590 TGCAACACCATTGAATCTTCTC 57.228 40.909 0.00 0.00 0.00 2.87
605 618 3.833650 TCCATGCAACACCATTGAATCTT 59.166 39.130 0.00 0.00 0.00 2.40
606 619 3.433343 TCCATGCAACACCATTGAATCT 58.567 40.909 0.00 0.00 0.00 2.40
607 620 3.872511 TCCATGCAACACCATTGAATC 57.127 42.857 0.00 0.00 0.00 2.52
621 689 1.890979 CCGAGTGAGCCATCCATGC 60.891 63.158 0.00 0.00 0.00 4.06
658 759 0.318107 CCAAACGCCAGCAAGAACAG 60.318 55.000 0.00 0.00 0.00 3.16
665 766 4.269523 AGAGCCCAAACGCCAGCA 62.270 61.111 0.00 0.00 0.00 4.41
685 786 2.825836 CCCACGGGCATTCAGAGC 60.826 66.667 0.00 0.00 0.00 4.09
686 787 1.450312 GACCCACGGGCATTCAGAG 60.450 63.158 0.69 0.00 39.32 3.35
687 788 2.668632 GACCCACGGGCATTCAGA 59.331 61.111 0.69 0.00 39.32 3.27
690 791 4.041762 TGGGACCCACGGGCATTC 62.042 66.667 9.95 0.00 39.32 2.67
691 792 4.360405 GTGGGACCCACGGGCATT 62.360 66.667 27.79 0.00 44.95 3.56
901 1021 1.151699 TTGTGGGGAGGATGGGTGA 60.152 57.895 0.00 0.00 0.00 4.02
925 1045 4.767255 GAGCTGGGAGGTGCCGTG 62.767 72.222 0.00 0.00 37.63 4.94
932 1052 2.445654 GAGAGGGGAGCTGGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
934 1054 2.955246 AGGAGAGGGGAGCTGGGA 60.955 66.667 0.00 0.00 0.00 4.37
935 1055 2.445654 GAGGAGAGGGGAGCTGGG 60.446 72.222 0.00 0.00 0.00 4.45
941 1078 4.144727 GGAGGCGAGGAGAGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
956 1094 0.686441 ATGGATCGACGGGTTGAGGA 60.686 55.000 0.00 0.00 0.00 3.71
1011 1149 4.567385 GAGCAGAGGAGGAGCGCG 62.567 72.222 0.00 0.00 0.00 6.86
1173 1311 2.563702 GGTTTGTTACCGAGGTTGTCA 58.436 47.619 0.00 0.00 37.12 3.58
1194 1332 3.245519 GGATATGAAAACGAAGTCGGAGC 59.754 47.826 5.60 0.00 45.00 4.70
1196 1334 4.730949 AGGATATGAAAACGAAGTCGGA 57.269 40.909 5.60 0.00 45.00 4.55
1200 1338 7.745620 AACTGAAAGGATATGAAAACGAAGT 57.254 32.000 0.00 0.00 41.59 3.01
1201 1339 8.076178 ACAAACTGAAAGGATATGAAAACGAAG 58.924 33.333 0.00 0.00 39.30 3.79
1202 1340 7.860373 CACAAACTGAAAGGATATGAAAACGAA 59.140 33.333 0.00 0.00 39.30 3.85
1203 1341 7.012894 ACACAAACTGAAAGGATATGAAAACGA 59.987 33.333 0.00 0.00 39.30 3.85
1205 1343 7.920682 ACACACAAACTGAAAGGATATGAAAAC 59.079 33.333 0.00 0.00 39.30 2.43
1206 1344 8.006298 ACACACAAACTGAAAGGATATGAAAA 57.994 30.769 0.00 0.00 39.30 2.29
1209 1347 8.862325 ATTACACACAAACTGAAAGGATATGA 57.138 30.769 0.00 0.00 39.30 2.15
1216 1354 6.523201 GGCGATAATTACACACAAACTGAAAG 59.477 38.462 0.00 0.00 42.29 2.62
1218 1356 5.703592 AGGCGATAATTACACACAAACTGAA 59.296 36.000 0.00 0.00 0.00 3.02
1220 1358 5.545658 AGGCGATAATTACACACAAACTG 57.454 39.130 0.00 0.00 0.00 3.16
1221 1359 5.123344 GGAAGGCGATAATTACACACAAACT 59.877 40.000 0.00 0.00 0.00 2.66
1222 1360 5.123344 AGGAAGGCGATAATTACACACAAAC 59.877 40.000 0.00 0.00 0.00 2.93
1223 1361 5.250200 AGGAAGGCGATAATTACACACAAA 58.750 37.500 0.00 0.00 0.00 2.83
1224 1362 4.839121 AGGAAGGCGATAATTACACACAA 58.161 39.130 0.00 0.00 0.00 3.33
1226 1364 3.489785 CGAGGAAGGCGATAATTACACAC 59.510 47.826 0.00 0.00 0.00 3.82
1227 1365 3.382227 TCGAGGAAGGCGATAATTACACA 59.618 43.478 0.00 0.00 32.09 3.72
1228 1366 3.973657 TCGAGGAAGGCGATAATTACAC 58.026 45.455 0.00 0.00 32.09 2.90
1237 1375 0.535328 AGATCGATCGAGGAAGGCGA 60.535 55.000 23.84 0.00 42.48 5.54
1238 1376 0.386605 CAGATCGATCGAGGAAGGCG 60.387 60.000 23.84 3.75 0.00 5.52
1239 1377 0.671251 ACAGATCGATCGAGGAAGGC 59.329 55.000 23.84 8.14 0.00 4.35
1240 1378 2.287909 GGAACAGATCGATCGAGGAAGG 60.288 54.545 23.84 12.73 0.00 3.46
1241 1379 2.621055 AGGAACAGATCGATCGAGGAAG 59.379 50.000 23.84 14.72 0.00 3.46
1242 1380 2.656002 AGGAACAGATCGATCGAGGAA 58.344 47.619 23.84 0.00 0.00 3.36
1255 1393 5.613358 AAGCGTAAGAAATCAAGGAACAG 57.387 39.130 0.00 0.00 43.02 3.16
1258 1396 6.877611 AAGAAAGCGTAAGAAATCAAGGAA 57.122 33.333 0.00 0.00 43.02 3.36
1260 1398 5.858581 CCAAAGAAAGCGTAAGAAATCAAGG 59.141 40.000 0.00 0.00 43.02 3.61
1266 1404 4.457949 GGGATCCAAAGAAAGCGTAAGAAA 59.542 41.667 15.23 0.00 43.02 2.52
1269 1407 2.683362 GGGGATCCAAAGAAAGCGTAAG 59.317 50.000 15.23 0.00 43.44 2.34
1270 1408 2.718563 GGGGATCCAAAGAAAGCGTAA 58.281 47.619 15.23 0.00 0.00 3.18
1272 1410 0.676782 CGGGGATCCAAAGAAAGCGT 60.677 55.000 15.23 0.00 0.00 5.07
1273 1411 1.993369 GCGGGGATCCAAAGAAAGCG 61.993 60.000 15.23 0.00 0.00 4.68
1274 1412 1.809869 GCGGGGATCCAAAGAAAGC 59.190 57.895 15.23 3.95 0.00 3.51
1275 1413 1.993369 GCGCGGGGATCCAAAGAAAG 61.993 60.000 15.23 0.00 0.00 2.62
1298 1449 0.529773 TCGAACTTGAACACTGCGCT 60.530 50.000 9.73 0.00 0.00 5.92
1299 1450 0.383124 GTCGAACTTGAACACTGCGC 60.383 55.000 0.00 0.00 0.00 6.09
1448 1599 2.202878 GGCGCCGCTGATGAAGTA 60.203 61.111 12.58 0.00 0.00 2.24
1558 1709 2.766229 GAGGAGGAGGGGGAGTGC 60.766 72.222 0.00 0.00 0.00 4.40
1720 1871 4.230657 CCTAAGATCGATCCTAAGCAACG 58.769 47.826 21.66 0.78 0.00 4.10
1722 1873 4.480115 TCCCTAAGATCGATCCTAAGCAA 58.520 43.478 21.66 5.11 0.00 3.91
1725 1876 4.924625 TCCTCCCTAAGATCGATCCTAAG 58.075 47.826 21.66 15.34 0.00 2.18
1730 1881 7.841956 TCAAATAATCCTCCCTAAGATCGATC 58.158 38.462 17.91 17.91 0.00 3.69
1731 1882 7.798710 TCAAATAATCCTCCCTAAGATCGAT 57.201 36.000 0.00 0.00 0.00 3.59
1732 1883 7.798710 ATCAAATAATCCTCCCTAAGATCGA 57.201 36.000 0.00 0.00 0.00 3.59
1733 1884 9.593134 CTAATCAAATAATCCTCCCTAAGATCG 57.407 37.037 0.00 0.00 0.00 3.69
1787 1938 4.833478 AGAAGCACATCTGTCCACTAAT 57.167 40.909 0.00 0.00 0.00 1.73
1792 1943 3.049708 CAGAAGAAGCACATCTGTCCA 57.950 47.619 7.62 0.00 38.86 4.02
1834 1985 4.255833 TGATTTTGCGCCAGAAAGAAAT 57.744 36.364 4.18 0.07 0.00 2.17
1848 2002 7.933728 TTGCCATTTATGATCGATGATTTTG 57.066 32.000 0.54 0.00 0.00 2.44
1889 2043 9.420551 GAAATCTTGAAATCTCAAAGATTGCTT 57.579 29.630 9.85 0.00 43.67 3.91
1890 2044 8.804204 AGAAATCTTGAAATCTCAAAGATTGCT 58.196 29.630 10.70 10.70 43.67 3.91
1959 2113 0.249447 TTGCTGGATCCATACTCGCG 60.249 55.000 16.63 0.00 0.00 5.87
1960 2114 1.202580 ACTTGCTGGATCCATACTCGC 60.203 52.381 16.63 15.32 0.00 5.03
1961 2115 2.898729 ACTTGCTGGATCCATACTCG 57.101 50.000 16.63 4.00 0.00 4.18
1962 2116 6.016777 CCAAATAACTTGCTGGATCCATACTC 60.017 42.308 16.63 5.74 33.27 2.59
1963 2117 5.829924 CCAAATAACTTGCTGGATCCATACT 59.170 40.000 16.63 0.00 33.27 2.12
1964 2118 5.507985 GCCAAATAACTTGCTGGATCCATAC 60.508 44.000 16.63 11.45 33.27 2.39
1965 2119 4.584325 GCCAAATAACTTGCTGGATCCATA 59.416 41.667 16.63 3.69 33.27 2.74
1966 2120 3.385755 GCCAAATAACTTGCTGGATCCAT 59.614 43.478 16.63 1.02 33.27 3.41
1967 2121 2.760092 GCCAAATAACTTGCTGGATCCA 59.240 45.455 15.27 15.27 33.27 3.41
2030 2202 1.126079 CGTGTCTGCGTCGTTTACTT 58.874 50.000 0.00 0.00 0.00 2.24
2070 2242 0.462225 CTCCATCACTGCTGCTCCTG 60.462 60.000 0.00 0.00 0.00 3.86
2073 2245 1.206610 TCTTCTCCATCACTGCTGCTC 59.793 52.381 0.00 0.00 0.00 4.26
2074 2246 1.207570 CTCTTCTCCATCACTGCTGCT 59.792 52.381 0.00 0.00 0.00 4.24
2082 2254 1.330655 GGCGACCCTCTTCTCCATCA 61.331 60.000 0.00 0.00 0.00 3.07
2103 2275 5.761234 TGGAGTACTCAAATTTGTACCACAC 59.239 40.000 23.91 9.85 39.66 3.82
2110 2282 5.476945 GGAATGGTGGAGTACTCAAATTTGT 59.523 40.000 23.91 2.40 0.00 2.83
2114 2286 4.927267 TGGAATGGTGGAGTACTCAAAT 57.073 40.909 23.91 8.77 0.00 2.32
2115 2287 4.324254 GGATGGAATGGTGGAGTACTCAAA 60.324 45.833 23.91 9.19 0.00 2.69
2129 2301 3.899052 AATTGCCAACTGGATGGAATG 57.101 42.857 0.00 0.00 43.54 2.67
2130 2302 4.914177 AAAATTGCCAACTGGATGGAAT 57.086 36.364 0.00 1.49 43.54 3.01
2131 2303 5.483231 TGATAAAATTGCCAACTGGATGGAA 59.517 36.000 0.00 0.00 43.54 3.53
2132 2304 5.022122 TGATAAAATTGCCAACTGGATGGA 58.978 37.500 0.00 0.00 43.54 3.41
2133 2305 5.111293 GTGATAAAATTGCCAACTGGATGG 58.889 41.667 0.00 0.00 43.70 3.51
2134 2306 5.111293 GGTGATAAAATTGCCAACTGGATG 58.889 41.667 0.00 0.00 37.39 3.51
2135 2307 4.162131 GGGTGATAAAATTGCCAACTGGAT 59.838 41.667 0.00 0.00 37.39 3.41
2203 2384 6.936279 TCTCTGAACTCTGATTAAATTCGGT 58.064 36.000 0.00 0.00 0.00 4.69
2209 2390 9.973450 GCAGTATATCTCTGAACTCTGATTAAA 57.027 33.333 10.72 0.00 35.20 1.52
2211 2392 8.932434 AGCAGTATATCTCTGAACTCTGATTA 57.068 34.615 10.72 0.00 35.20 1.75
2226 2431 8.443953 AGTTCTTGAAATTGGAGCAGTATATC 57.556 34.615 0.00 0.00 0.00 1.63
2227 2432 8.814038 AAGTTCTTGAAATTGGAGCAGTATAT 57.186 30.769 0.00 0.00 0.00 0.86
2229 2434 7.530426 AAAGTTCTTGAAATTGGAGCAGTAT 57.470 32.000 0.00 0.00 0.00 2.12
2231 2436 5.859205 AAAGTTCTTGAAATTGGAGCAGT 57.141 34.783 0.00 0.00 0.00 4.40
2232 2437 6.642540 GGTAAAAGTTCTTGAAATTGGAGCAG 59.357 38.462 0.00 0.00 0.00 4.24
2233 2438 6.097554 TGGTAAAAGTTCTTGAAATTGGAGCA 59.902 34.615 0.00 2.41 0.00 4.26
2234 2439 6.420903 GTGGTAAAAGTTCTTGAAATTGGAGC 59.579 38.462 0.00 0.17 0.00 4.70
2236 2441 7.093727 TGTGTGGTAAAAGTTCTTGAAATTGGA 60.094 33.333 0.00 0.00 0.00 3.53
2237 2442 7.010091 GTGTGTGGTAAAAGTTCTTGAAATTGG 59.990 37.037 0.00 0.00 0.00 3.16
2238 2443 7.759433 AGTGTGTGGTAAAAGTTCTTGAAATTG 59.241 33.333 0.00 0.00 0.00 2.32
2239 2444 7.836842 AGTGTGTGGTAAAAGTTCTTGAAATT 58.163 30.769 0.00 0.00 0.00 1.82
2240 2445 7.404671 AGTGTGTGGTAAAAGTTCTTGAAAT 57.595 32.000 0.00 0.00 0.00 2.17
2241 2446 6.827586 AGTGTGTGGTAAAAGTTCTTGAAA 57.172 33.333 0.00 0.00 0.00 2.69
2242 2447 6.827586 AAGTGTGTGGTAAAAGTTCTTGAA 57.172 33.333 0.00 0.00 0.00 2.69
2243 2448 6.827586 AAAGTGTGTGGTAAAAGTTCTTGA 57.172 33.333 0.00 0.00 0.00 3.02
2244 2449 7.383843 ACAAAAAGTGTGTGGTAAAAGTTCTTG 59.616 33.333 0.00 0.00 39.72 3.02
2245 2450 7.438564 ACAAAAAGTGTGTGGTAAAAGTTCTT 58.561 30.769 0.00 0.00 39.72 2.52
2246 2451 6.988522 ACAAAAAGTGTGTGGTAAAAGTTCT 58.011 32.000 0.00 0.00 39.72 3.01
2247 2452 8.024865 AGTACAAAAAGTGTGTGGTAAAAGTTC 58.975 33.333 0.00 0.00 41.89 3.01
2248 2453 7.888424 AGTACAAAAAGTGTGTGGTAAAAGTT 58.112 30.769 0.00 0.00 41.89 2.66
2249 2454 7.457024 AGTACAAAAAGTGTGTGGTAAAAGT 57.543 32.000 0.00 0.00 41.89 2.66
2250 2455 8.751302 AAAGTACAAAAAGTGTGTGGTAAAAG 57.249 30.769 0.00 0.00 41.89 2.27
2255 2460 9.791820 GTATTAAAAGTACAAAAAGTGTGTGGT 57.208 29.630 0.00 0.00 41.89 4.16
2256 2461 9.790389 TGTATTAAAAGTACAAAAAGTGTGTGG 57.210 29.630 0.00 0.00 41.89 4.17
2281 2486 6.200854 GGAAATGCTAACCAGAACAACTTTTG 59.799 38.462 0.00 0.00 0.00 2.44
2282 2487 6.280643 GGAAATGCTAACCAGAACAACTTTT 58.719 36.000 0.00 0.00 0.00 2.27
2285 2490 3.826729 GGGAAATGCTAACCAGAACAACT 59.173 43.478 0.00 0.00 0.00 3.16
2286 2491 3.826729 AGGGAAATGCTAACCAGAACAAC 59.173 43.478 0.00 0.00 0.00 3.32
2287 2492 4.112634 AGGGAAATGCTAACCAGAACAA 57.887 40.909 0.00 0.00 0.00 2.83
2288 2493 3.806949 AGGGAAATGCTAACCAGAACA 57.193 42.857 0.00 0.00 0.00 3.18
2289 2494 3.945921 GGTAGGGAAATGCTAACCAGAAC 59.054 47.826 0.00 0.00 0.00 3.01
2290 2495 3.589735 TGGTAGGGAAATGCTAACCAGAA 59.410 43.478 0.00 0.00 0.00 3.02
2292 2497 3.545703 CTGGTAGGGAAATGCTAACCAG 58.454 50.000 5.03 5.03 37.71 4.00
2294 2499 2.508300 TCCTGGTAGGGAAATGCTAACC 59.492 50.000 0.00 0.00 35.59 2.85
2303 2508 5.103430 TCCTTTTTCTTTTCCTGGTAGGGAA 60.103 40.000 0.00 0.00 42.86 3.97
2304 2509 4.417518 TCCTTTTTCTTTTCCTGGTAGGGA 59.582 41.667 0.00 0.00 35.59 4.20
2305 2510 4.736473 TCCTTTTTCTTTTCCTGGTAGGG 58.264 43.478 0.00 0.00 35.59 3.53
2306 2511 6.239317 CCTTTCCTTTTTCTTTTCCTGGTAGG 60.239 42.308 0.00 0.00 36.46 3.18
2307 2512 6.323996 ACCTTTCCTTTTTCTTTTCCTGGTAG 59.676 38.462 0.00 0.00 0.00 3.18
2309 2514 5.030147 ACCTTTCCTTTTTCTTTTCCTGGT 58.970 37.500 0.00 0.00 0.00 4.00
2310 2515 5.614324 ACCTTTCCTTTTTCTTTTCCTGG 57.386 39.130 0.00 0.00 0.00 4.45
2311 2516 6.040955 AGCTACCTTTCCTTTTTCTTTTCCTG 59.959 38.462 0.00 0.00 0.00 3.86
2312 2517 6.136857 AGCTACCTTTCCTTTTTCTTTTCCT 58.863 36.000 0.00 0.00 0.00 3.36
2313 2518 6.406692 AGCTACCTTTCCTTTTTCTTTTCC 57.593 37.500 0.00 0.00 0.00 3.13
2314 2519 8.604035 CAAAAGCTACCTTTCCTTTTTCTTTTC 58.396 33.333 0.00 0.00 40.30 2.29
2315 2520 7.552687 CCAAAAGCTACCTTTCCTTTTTCTTTT 59.447 33.333 0.00 0.00 40.30 2.27
2316 2521 7.047891 CCAAAAGCTACCTTTCCTTTTTCTTT 58.952 34.615 0.00 0.00 40.30 2.52
2318 2523 5.070446 CCCAAAAGCTACCTTTCCTTTTTCT 59.930 40.000 0.00 0.00 40.30 2.52
2319 2524 5.163343 ACCCAAAAGCTACCTTTCCTTTTTC 60.163 40.000 0.00 0.00 40.30 2.29
2320 2525 4.719773 ACCCAAAAGCTACCTTTCCTTTTT 59.280 37.500 0.00 0.00 40.30 1.94
2322 2527 3.641436 CACCCAAAAGCTACCTTTCCTTT 59.359 43.478 0.00 0.00 40.30 3.11
2323 2528 3.230976 CACCCAAAAGCTACCTTTCCTT 58.769 45.455 0.00 0.00 40.30 3.36
2324 2529 2.490902 CCACCCAAAAGCTACCTTTCCT 60.491 50.000 0.00 0.00 40.30 3.36
2325 2530 1.893137 CCACCCAAAAGCTACCTTTCC 59.107 52.381 0.00 0.00 40.30 3.13
2326 2531 2.557056 GTCCACCCAAAAGCTACCTTTC 59.443 50.000 0.00 0.00 40.30 2.62
2328 2533 1.780919 AGTCCACCCAAAAGCTACCTT 59.219 47.619 0.00 0.00 0.00 3.50
2329 2534 1.446016 AGTCCACCCAAAAGCTACCT 58.554 50.000 0.00 0.00 0.00 3.08
2330 2535 2.287977 AAGTCCACCCAAAAGCTACC 57.712 50.000 0.00 0.00 0.00 3.18
2331 2536 5.777850 TTAAAAGTCCACCCAAAAGCTAC 57.222 39.130 0.00 0.00 0.00 3.58
2332 2537 6.325286 ACAATTAAAAGTCCACCCAAAAGCTA 59.675 34.615 0.00 0.00 0.00 3.32
2333 2538 5.130311 ACAATTAAAAGTCCACCCAAAAGCT 59.870 36.000 0.00 0.00 0.00 3.74
2334 2539 5.364778 ACAATTAAAAGTCCACCCAAAAGC 58.635 37.500 0.00 0.00 0.00 3.51
2335 2540 6.701400 CAGACAATTAAAAGTCCACCCAAAAG 59.299 38.462 6.95 0.00 35.38 2.27
2336 2541 6.381420 TCAGACAATTAAAAGTCCACCCAAAA 59.619 34.615 6.95 0.00 35.38 2.44
2337 2542 5.894393 TCAGACAATTAAAAGTCCACCCAAA 59.106 36.000 6.95 0.00 35.38 3.28
2338 2543 5.450453 TCAGACAATTAAAAGTCCACCCAA 58.550 37.500 6.95 0.00 35.38 4.12
2339 2544 5.055265 TCAGACAATTAAAAGTCCACCCA 57.945 39.130 6.95 0.00 35.38 4.51
2340 2545 5.710099 TCATCAGACAATTAAAAGTCCACCC 59.290 40.000 6.95 0.00 35.38 4.61
2342 2547 6.749118 GCATCATCAGACAATTAAAAGTCCAC 59.251 38.462 6.95 0.00 35.38 4.02
2344 2549 6.855836 TGCATCATCAGACAATTAAAAGTCC 58.144 36.000 6.95 0.00 35.38 3.85
2345 2550 7.533426 ACTGCATCATCAGACAATTAAAAGTC 58.467 34.615 0.00 3.22 37.51 3.01
2346 2551 7.458409 ACTGCATCATCAGACAATTAAAAGT 57.542 32.000 0.00 0.00 37.51 2.66
2352 2557 9.346005 TGAATATAACTGCATCATCAGACAATT 57.654 29.630 0.00 0.00 37.51 2.32
2353 2558 8.781196 GTGAATATAACTGCATCATCAGACAAT 58.219 33.333 0.00 0.00 37.51 2.71
2354 2559 7.769970 TGTGAATATAACTGCATCATCAGACAA 59.230 33.333 0.00 0.00 37.51 3.18
2356 2561 7.440556 AGTGTGAATATAACTGCATCATCAGAC 59.559 37.037 0.00 0.00 37.51 3.51
2357 2562 7.440255 CAGTGTGAATATAACTGCATCATCAGA 59.560 37.037 0.00 0.00 35.34 3.27
2359 2564 7.274447 TCAGTGTGAATATAACTGCATCATCA 58.726 34.615 0.00 0.00 40.89 3.07
2360 2565 7.654923 TCTCAGTGTGAATATAACTGCATCATC 59.345 37.037 0.00 0.00 40.89 2.92
2361 2566 7.503549 TCTCAGTGTGAATATAACTGCATCAT 58.496 34.615 0.00 0.00 40.89 2.45
2362 2567 6.877236 TCTCAGTGTGAATATAACTGCATCA 58.123 36.000 0.00 0.00 40.89 3.07
2363 2568 6.983307 ACTCTCAGTGTGAATATAACTGCATC 59.017 38.462 0.00 0.00 40.89 3.91
2364 2569 6.882656 ACTCTCAGTGTGAATATAACTGCAT 58.117 36.000 0.00 0.00 40.89 3.96
2365 2570 6.286240 ACTCTCAGTGTGAATATAACTGCA 57.714 37.500 0.00 0.00 40.89 4.41
2366 2571 7.258441 TGTACTCTCAGTGTGAATATAACTGC 58.742 38.462 0.00 0.00 40.89 4.40
2378 2583 9.973450 GAAACATGATATATGTACTCTCAGTGT 57.027 33.333 0.00 0.00 0.00 3.55
2379 2584 9.416794 GGAAACATGATATATGTACTCTCAGTG 57.583 37.037 0.00 0.00 0.00 3.66
2383 2588 9.646427 GGAAGGAAACATGATATATGTACTCTC 57.354 37.037 0.00 0.00 0.00 3.20
2387 2592 9.220767 GGAAGGAAGGAAACATGATATATGTAC 57.779 37.037 0.00 0.00 0.00 2.90
2389 2594 6.936900 CGGAAGGAAGGAAACATGATATATGT 59.063 38.462 0.00 0.00 0.00 2.29
2391 2596 7.316393 TCGGAAGGAAGGAAACATGATATAT 57.684 36.000 0.00 0.00 0.00 0.86
2392 2597 6.740944 TCGGAAGGAAGGAAACATGATATA 57.259 37.500 0.00 0.00 0.00 0.86
2393 2598 5.630415 TCGGAAGGAAGGAAACATGATAT 57.370 39.130 0.00 0.00 0.00 1.63
2394 2599 5.630415 ATCGGAAGGAAGGAAACATGATA 57.370 39.130 0.00 0.00 0.00 2.15
2395 2600 4.510167 ATCGGAAGGAAGGAAACATGAT 57.490 40.909 0.00 0.00 0.00 2.45
2396 2601 4.009675 CAATCGGAAGGAAGGAAACATGA 58.990 43.478 0.00 0.00 0.00 3.07
2397 2602 3.758554 ACAATCGGAAGGAAGGAAACATG 59.241 43.478 0.00 0.00 0.00 3.21
2398 2603 4.034285 ACAATCGGAAGGAAGGAAACAT 57.966 40.909 0.00 0.00 0.00 2.71
2399 2604 3.502123 ACAATCGGAAGGAAGGAAACA 57.498 42.857 0.00 0.00 0.00 2.83
2400 2605 3.374367 GCTACAATCGGAAGGAAGGAAAC 59.626 47.826 0.00 0.00 0.00 2.78
2404 2609 2.555199 CTGCTACAATCGGAAGGAAGG 58.445 52.381 0.00 0.00 0.00 3.46
2405 2610 1.936547 GCTGCTACAATCGGAAGGAAG 59.063 52.381 0.00 0.00 0.00 3.46
2406 2611 1.277842 TGCTGCTACAATCGGAAGGAA 59.722 47.619 0.00 0.00 0.00 3.36
2407 2612 0.901827 TGCTGCTACAATCGGAAGGA 59.098 50.000 0.00 0.00 0.00 3.36
2408 2613 1.869767 GATGCTGCTACAATCGGAAGG 59.130 52.381 0.00 0.00 0.00 3.46
2409 2614 2.554142 TGATGCTGCTACAATCGGAAG 58.446 47.619 0.00 0.00 0.00 3.46
2410 2615 2.689553 TGATGCTGCTACAATCGGAA 57.310 45.000 0.00 0.00 0.00 4.30
2411 2616 2.486918 CATGATGCTGCTACAATCGGA 58.513 47.619 0.00 0.00 0.00 4.55
2412 2617 1.069432 GCATGATGCTGCTACAATCGG 60.069 52.381 10.72 0.00 40.96 4.18
2413 2618 2.311450 GCATGATGCTGCTACAATCG 57.689 50.000 10.72 0.00 40.96 3.34
2421 2626 8.732967 AAAGTCCCTTTTTAGCATGATGCTGC 62.733 42.308 28.78 0.00 41.58 5.25
2427 2632 4.217550 CCGAAAAGTCCCTTTTTAGCATGA 59.782 41.667 0.00 0.00 42.72 3.07
2429 2634 4.149598 ACCGAAAAGTCCCTTTTTAGCAT 58.850 39.130 3.69 0.00 42.72 3.79
2430 2635 3.558033 ACCGAAAAGTCCCTTTTTAGCA 58.442 40.909 3.69 0.00 42.72 3.49
2431 2636 4.579454 AACCGAAAAGTCCCTTTTTAGC 57.421 40.909 3.69 0.00 42.72 3.09
2432 2637 6.139048 TGAAACCGAAAAGTCCCTTTTTAG 57.861 37.500 3.69 2.03 42.72 1.85
2433 2638 6.527057 TTGAAACCGAAAAGTCCCTTTTTA 57.473 33.333 3.69 0.00 42.72 1.52
2436 2641 5.607939 AATTGAAACCGAAAAGTCCCTTT 57.392 34.783 0.00 0.00 34.94 3.11
2437 2642 5.607939 AAATTGAAACCGAAAAGTCCCTT 57.392 34.783 0.00 0.00 0.00 3.95
2438 2643 5.278120 CGTAAATTGAAACCGAAAAGTCCCT 60.278 40.000 0.00 0.00 0.00 4.20
2441 2646 5.338822 GCTCGTAAATTGAAACCGAAAAGTC 59.661 40.000 0.00 0.00 0.00 3.01
2442 2647 5.209977 GCTCGTAAATTGAAACCGAAAAGT 58.790 37.500 0.00 0.00 0.00 2.66
2444 2649 4.971220 GTGCTCGTAAATTGAAACCGAAAA 59.029 37.500 0.00 0.00 0.00 2.29
2447 2652 2.481185 GGTGCTCGTAAATTGAAACCGA 59.519 45.455 0.00 0.00 0.00 4.69
2448 2653 2.413634 GGGTGCTCGTAAATTGAAACCG 60.414 50.000 0.00 0.00 0.00 4.44
2450 2655 2.413634 CGGGGTGCTCGTAAATTGAAAC 60.414 50.000 0.00 0.00 0.00 2.78
2451 2656 1.807742 CGGGGTGCTCGTAAATTGAAA 59.192 47.619 0.00 0.00 0.00 2.69
2452 2657 1.270947 ACGGGGTGCTCGTAAATTGAA 60.271 47.619 0.00 0.00 39.22 2.69
2453 2658 0.322322 ACGGGGTGCTCGTAAATTGA 59.678 50.000 0.00 0.00 39.22 2.57
2454 2659 2.012937 TACGGGGTGCTCGTAAATTG 57.987 50.000 0.00 0.00 39.68 2.32
2455 2660 2.766345 TTACGGGGTGCTCGTAAATT 57.234 45.000 6.61 0.00 45.94 1.82
2458 2663 1.832883 TACTTACGGGGTGCTCGTAA 58.167 50.000 0.00 0.00 46.48 3.18
2459 2664 1.832883 TTACTTACGGGGTGCTCGTA 58.167 50.000 0.00 0.00 41.38 3.43
2460 2665 1.188863 ATTACTTACGGGGTGCTCGT 58.811 50.000 0.00 0.00 43.64 4.18
2461 2666 2.544486 GGTATTACTTACGGGGTGCTCG 60.544 54.545 0.00 0.00 0.00 5.03
2462 2667 2.697229 AGGTATTACTTACGGGGTGCTC 59.303 50.000 0.00 0.00 0.00 4.26
2463 2668 2.755686 AGGTATTACTTACGGGGTGCT 58.244 47.619 0.00 0.00 0.00 4.40
2464 2669 4.100035 AGTTAGGTATTACTTACGGGGTGC 59.900 45.833 0.00 0.00 0.00 5.01
2465 2670 5.360714 TGAGTTAGGTATTACTTACGGGGTG 59.639 44.000 0.00 0.00 0.00 4.61
2466 2671 5.360999 GTGAGTTAGGTATTACTTACGGGGT 59.639 44.000 0.00 0.00 0.00 4.95
2467 2672 5.360714 TGTGAGTTAGGTATTACTTACGGGG 59.639 44.000 0.00 0.00 34.62 5.73
2468 2673 6.096001 ACTGTGAGTTAGGTATTACTTACGGG 59.904 42.308 0.00 0.00 39.96 5.28
2469 2674 6.971184 CACTGTGAGTTAGGTATTACTTACGG 59.029 42.308 0.32 0.00 40.87 4.02
2470 2675 7.755591 TCACTGTGAGTTAGGTATTACTTACG 58.244 38.462 6.36 0.00 34.62 3.18
2471 2676 9.570488 CTTCACTGTGAGTTAGGTATTACTTAC 57.430 37.037 10.77 0.00 33.07 2.34
2472 2677 8.248945 GCTTCACTGTGAGTTAGGTATTACTTA 58.751 37.037 10.77 0.00 0.00 2.24
2473 2678 7.038941 AGCTTCACTGTGAGTTAGGTATTACTT 60.039 37.037 10.77 0.00 0.00 2.24
2474 2679 6.437793 AGCTTCACTGTGAGTTAGGTATTACT 59.562 38.462 10.77 0.00 0.00 2.24
2475 2680 6.531948 CAGCTTCACTGTGAGTTAGGTATTAC 59.468 42.308 10.77 0.00 41.86 1.89
2476 2681 6.631016 CAGCTTCACTGTGAGTTAGGTATTA 58.369 40.000 10.77 0.00 41.86 0.98
2477 2682 5.482908 CAGCTTCACTGTGAGTTAGGTATT 58.517 41.667 10.77 0.00 41.86 1.89
2520 2725 0.603439 CCCTTGTTTGGGTGCAATGC 60.603 55.000 0.00 0.00 42.25 3.56
2521 2726 3.610637 CCCTTGTTTGGGTGCAATG 57.389 52.632 0.00 0.00 42.25 2.82
2574 2779 4.994852 ACAAACTTTCTGCGTAGATAAGCA 59.005 37.500 18.16 0.68 41.55 3.91
2585 2790 4.032703 TCTCTGCAAACAAACTTTCTGC 57.967 40.909 0.00 0.00 0.00 4.26
2685 2890 0.951558 TTCGAGGAGGTTTTGCTTGC 59.048 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.