Multiple sequence alignment - TraesCS1A01G347900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G347900 chr1A 100.000 5967 0 0 1 5967 533462225 533468191 0.000000e+00 11020
1 TraesCS1A01G347900 chr1A 91.860 86 6 1 4083 4168 533466223 533466307 1.050000e-22 119
2 TraesCS1A01G347900 chr1A 91.860 86 6 1 3999 4083 533466307 533466392 1.050000e-22 119
3 TraesCS1A01G347900 chr1B 92.416 2268 121 28 2790 5032 591231148 591233389 0.000000e+00 3188
4 TraesCS1A01G347900 chr1B 94.052 807 23 9 1732 2531 591230361 591231149 0.000000e+00 1201
5 TraesCS1A01G347900 chr1B 87.069 1044 89 23 722 1732 591229140 591230170 0.000000e+00 1138
6 TraesCS1A01G347900 chr1B 82.483 725 44 27 1 678 591228454 591229142 5.220000e-155 558
7 TraesCS1A01G347900 chr1B 85.897 156 11 6 5816 5966 591233975 591234124 8.010000e-34 156
8 TraesCS1A01G347900 chr1B 88.506 87 8 2 3999 4083 591232437 591232523 2.940000e-18 104
9 TraesCS1A01G347900 chr1D 91.639 1806 105 16 725 2505 436211365 436213149 0.000000e+00 2457
10 TraesCS1A01G347900 chr1D 92.776 1675 73 20 3733 5385 436214099 436215747 0.000000e+00 2379
11 TraesCS1A01G347900 chr1D 91.487 881 46 11 2879 3735 436213143 436214018 0.000000e+00 1184
12 TraesCS1A01G347900 chr1D 84.939 571 46 25 1 560 436210823 436211364 5.260000e-150 542
13 TraesCS1A01G347900 chr1D 87.010 408 31 15 5578 5965 436215925 436216330 1.970000e-119 440
14 TraesCS1A01G347900 chr3B 89.164 646 62 5 1778 2422 565434445 565433807 0.000000e+00 798
15 TraesCS1A01G347900 chr3B 88.650 652 65 6 1772 2422 565564132 565563489 0.000000e+00 785
16 TraesCS1A01G347900 chr3B 85.714 567 58 10 655 1199 565435593 565435028 1.440000e-160 577
17 TraesCS1A01G347900 chr3B 85.846 544 56 13 4530 5059 565429169 565428633 5.220000e-155 558
18 TraesCS1A01G347900 chr3B 78.646 960 118 56 175 1081 565565898 565564973 1.880000e-154 556
19 TraesCS1A01G347900 chr3B 85.294 544 59 13 4530 5059 565561733 565561197 5.260000e-150 542
20 TraesCS1A01G347900 chr3B 81.788 593 65 24 1193 1766 565564801 565564233 1.960000e-124 457
21 TraesCS1A01G347900 chr3B 93.893 262 13 3 2532 2791 144814594 144814334 5.610000e-105 392
22 TraesCS1A01G347900 chr3B 81.420 479 64 15 3082 3536 565562653 565562176 9.450000e-98 368
23 TraesCS1A01G347900 chr3B 84.667 300 32 9 2799 3093 565433659 565433369 2.720000e-73 287
24 TraesCS1A01G347900 chr3B 87.109 256 24 4 1412 1665 565434924 565434676 1.270000e-71 281
25 TraesCS1A01G347900 chr3B 83.667 300 35 9 2799 3093 565563341 565563051 2.740000e-68 270
26 TraesCS1A01G347900 chr3B 86.290 248 33 1 3289 3536 565430197 565429951 9.860000e-68 268
27 TraesCS1A01G347900 chr3B 92.667 150 11 0 1052 1201 565564975 565564826 3.620000e-52 217
28 TraesCS1A01G347900 chr3B 85.965 171 23 1 3752 3922 565429357 565429188 1.320000e-41 182
29 TraesCS1A01G347900 chr3B 87.500 88 11 0 3082 3169 565432976 565432889 1.060000e-17 102
30 TraesCS1A01G347900 chr3A 87.309 654 71 9 1772 2422 571398608 571397964 0.000000e+00 737
31 TraesCS1A01G347900 chr3A 80.573 978 115 46 271 1201 571400252 571399303 0.000000e+00 684
32 TraesCS1A01G347900 chr3A 88.309 479 44 10 4587 5059 571395808 571395336 1.120000e-156 564
33 TraesCS1A01G347900 chr3A 83.193 595 57 23 1191 1766 571399279 571398709 6.900000e-139 505
34 TraesCS1A01G347900 chr3A 83.156 469 61 9 3082 3534 571397396 571396930 4.300000e-111 412
35 TraesCS1A01G347900 chr3D 86.799 553 62 8 655 1201 433193828 433193281 1.840000e-169 606
36 TraesCS1A01G347900 chr3D 86.765 544 51 13 4530 5059 433189860 433189324 2.400000e-163 586
37 TraesCS1A01G347900 chr3D 82.155 594 64 22 1191 1766 433193258 433192689 7.000000e-129 472
38 TraesCS1A01G347900 chr3D 82.729 469 63 10 3082 3534 433191461 433190995 9.310000e-108 401
39 TraesCS1A01G347900 chr3D 86.226 363 40 6 2062 2422 433192337 433191983 9.380000e-103 385
40 TraesCS1A01G347900 chr3D 90.909 253 20 3 1772 2023 433192587 433192337 2.660000e-88 337
41 TraesCS1A01G347900 chr3D 81.847 314 30 19 175 476 433194486 433194188 7.730000e-59 239
42 TraesCS1A01G347900 chr3D 85.279 197 22 3 3731 3922 433190073 433189879 4.720000e-46 196
43 TraesCS1A01G347900 chr2D 95.076 264 12 1 2532 2795 491802869 491802607 1.200000e-111 414
44 TraesCS1A01G347900 chr4D 95.686 255 11 0 2532 2786 252187066 252186812 1.550000e-110 411
45 TraesCS1A01G347900 chr2A 94.697 264 13 1 2532 2795 636904687 636904425 5.570000e-110 409
46 TraesCS1A01G347900 chr7A 94.275 262 14 1 2530 2791 595822713 595822973 3.350000e-107 399
47 TraesCS1A01G347900 chr5A 94.574 258 14 0 2528 2785 477975282 477975539 3.350000e-107 399
48 TraesCS1A01G347900 chr4A 93.916 263 16 0 2521 2783 560903859 560904121 1.200000e-106 398
49 TraesCS1A01G347900 chr6A 93.015 272 17 2 2525 2795 599623313 599623043 4.330000e-106 396
50 TraesCS1A01G347900 chr2B 93.916 263 15 1 2532 2793 576085416 576085154 4.330000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G347900 chr1A 533462225 533468191 5966 False 3752.666667 11020 94.573333 1 5967 3 chr1A.!!$F1 5966
1 TraesCS1A01G347900 chr1B 591228454 591234124 5670 False 1057.500000 3188 88.403833 1 5966 6 chr1B.!!$F1 5965
2 TraesCS1A01G347900 chr1D 436210823 436216330 5507 False 1400.400000 2457 89.570200 1 5965 5 chr1D.!!$F1 5964
3 TraesCS1A01G347900 chr3B 565561197 565565898 4701 True 456.428571 785 84.590286 175 5059 7 chr3B.!!$R3 4884
4 TraesCS1A01G347900 chr3B 565428633 565435593 6960 True 381.625000 798 86.531875 655 5059 8 chr3B.!!$R2 4404
5 TraesCS1A01G347900 chr3A 571395336 571400252 4916 True 580.400000 737 84.508000 271 5059 5 chr3A.!!$R1 4788
6 TraesCS1A01G347900 chr3D 433189324 433194486 5162 True 402.750000 606 85.338625 175 5059 8 chr3D.!!$R1 4884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 534 0.253327 CTTGTCCTGCTCCCCTTACC 59.747 60.0 0.00 0.0 0.00 2.85 F
1071 1373 0.175760 TGCTCGTGTTATCCTCTGCC 59.824 55.0 0.00 0.0 0.00 4.85 F
1072 1400 0.530870 GCTCGTGTTATCCTCTGCCC 60.531 60.0 0.00 0.0 0.00 5.36 F
1422 1810 0.687920 TCCCTACGTGCCATGTTTCA 59.312 50.0 0.00 0.0 0.00 2.69 F
2710 3473 0.035725 CATTGGAGCAGCCTGAGTCA 60.036 55.0 0.00 0.0 37.63 3.41 F
2713 3476 0.035725 TGGAGCAGCCTGAGTCATTG 60.036 55.0 0.00 0.0 37.63 2.82 F
2733 3496 0.101219 GATTGACCTGATTTGGCGGC 59.899 55.0 0.00 0.0 0.00 6.53 F
2742 3505 0.179103 GATTTGGCGGCCAGGATTTG 60.179 55.0 22.59 0.0 33.81 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1712 0.312416 ACGATGCGTCTATCTCAGGC 59.688 55.000 4.05 0.00 33.69 4.85 R
2691 3454 0.035725 TGACTCAGGCTGCTCCAATG 60.036 55.000 10.34 0.00 37.29 2.82 R
2694 3457 0.035725 CAATGACTCAGGCTGCTCCA 60.036 55.000 10.34 7.29 37.29 3.86 R
2714 3477 0.101219 GCCGCCAAATCAGGTCAATC 59.899 55.000 0.00 0.00 0.00 2.67 R
4584 9258 0.692756 TCTTGTCACCCACCCTGTCA 60.693 55.000 0.00 0.00 0.00 3.58 R
4816 9490 3.066203 ACACTTAACACGGCAGAAAAAGG 59.934 43.478 0.00 0.00 0.00 3.11 R
4832 9506 5.755409 TCCCTAGCAGATTCAAACACTTA 57.245 39.130 0.00 0.00 0.00 2.24 R
5007 9690 2.903798 TCAATCAGTGCGCATACATCA 58.096 42.857 15.91 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 128 1.175983 TTTTGGGCCGAATTCGCAGT 61.176 50.000 22.36 0.00 38.18 4.40
139 158 0.896940 CAGTGCCAGCCTCCACATTT 60.897 55.000 0.00 0.00 34.48 2.32
298 326 1.826054 CTCTCATCTCTCCGCCCGT 60.826 63.158 0.00 0.00 0.00 5.28
345 373 2.457743 TTACGCGTTGCCCCATCTGT 62.458 55.000 20.78 0.00 0.00 3.41
346 374 2.457743 TACGCGTTGCCCCATCTGTT 62.458 55.000 20.78 0.00 0.00 3.16
352 380 2.190578 GCCCCATCTGTTCCTCGG 59.809 66.667 0.00 0.00 0.00 4.63
381 409 2.109799 CCATCTCGGATGCGGCTT 59.890 61.111 6.82 0.00 36.56 4.35
383 411 1.522355 CATCTCGGATGCGGCTTGT 60.522 57.895 6.82 0.00 0.00 3.16
481 520 2.825836 CCATGGGAGCCGCTTGTC 60.826 66.667 2.85 0.00 0.00 3.18
482 521 2.825836 CATGGGAGCCGCTTGTCC 60.826 66.667 0.00 0.00 0.00 4.02
484 523 3.335356 ATGGGAGCCGCTTGTCCTG 62.335 63.158 0.00 0.00 32.90 3.86
486 525 4.400961 GGAGCCGCTTGTCCTGCT 62.401 66.667 0.00 0.00 36.62 4.24
488 527 4.400961 AGCCGCTTGTCCTGCTCC 62.401 66.667 0.00 0.00 0.00 4.70
490 529 4.785453 CCGCTTGTCCTGCTCCCC 62.785 72.222 0.00 0.00 0.00 4.81
491 530 3.710722 CGCTTGTCCTGCTCCCCT 61.711 66.667 0.00 0.00 0.00 4.79
492 531 2.759795 GCTTGTCCTGCTCCCCTT 59.240 61.111 0.00 0.00 0.00 3.95
493 532 1.899437 CGCTTGTCCTGCTCCCCTTA 61.899 60.000 0.00 0.00 0.00 2.69
494 533 0.393132 GCTTGTCCTGCTCCCCTTAC 60.393 60.000 0.00 0.00 0.00 2.34
495 534 0.253327 CTTGTCCTGCTCCCCTTACC 59.747 60.000 0.00 0.00 0.00 2.85
496 535 1.205460 TTGTCCTGCTCCCCTTACCC 61.205 60.000 0.00 0.00 0.00 3.69
497 536 2.365105 TCCTGCTCCCCTTACCCG 60.365 66.667 0.00 0.00 0.00 5.28
498 537 3.480133 CCTGCTCCCCTTACCCGG 61.480 72.222 0.00 0.00 0.00 5.73
499 538 2.687566 CTGCTCCCCTTACCCGGT 60.688 66.667 0.00 0.00 0.00 5.28
500 539 2.204029 TGCTCCCCTTACCCGGTT 60.204 61.111 0.00 0.00 0.00 4.44
544 583 1.635663 GCGGCTGCGATTGTACAAGT 61.636 55.000 14.65 2.50 0.00 3.16
590 646 4.083164 TGCTGCTGTTGTGTTCTTGATATG 60.083 41.667 0.00 0.00 0.00 1.78
593 649 6.348458 GCTGCTGTTGTGTTCTTGATATGTAA 60.348 38.462 0.00 0.00 0.00 2.41
597 653 7.066284 GCTGTTGTGTTCTTGATATGTAATCCT 59.934 37.037 0.00 0.00 0.00 3.24
600 656 8.946085 GTTGTGTTCTTGATATGTAATCCTTCA 58.054 33.333 0.00 0.00 0.00 3.02
601 657 8.492673 TGTGTTCTTGATATGTAATCCTTCAC 57.507 34.615 0.00 0.00 0.00 3.18
604 826 8.946085 TGTTCTTGATATGTAATCCTTCACAAC 58.054 33.333 0.00 0.00 0.00 3.32
623 845 8.729805 TCACAACTATATTCACATGTTGCATA 57.270 30.769 0.00 0.00 40.88 3.14
624 846 8.611757 TCACAACTATATTCACATGTTGCATAC 58.388 33.333 0.00 0.00 40.88 2.39
625 847 8.615211 CACAACTATATTCACATGTTGCATACT 58.385 33.333 0.00 0.00 40.88 2.12
626 848 9.177608 ACAACTATATTCACATGTTGCATACTT 57.822 29.630 0.00 0.00 40.88 2.24
627 849 9.442033 CAACTATATTCACATGTTGCATACTTG 57.558 33.333 0.00 10.96 37.78 3.16
695 953 9.820725 CATCCTATTAAAAATGAGCAATTCCAA 57.179 29.630 0.00 0.00 0.00 3.53
717 975 6.424812 CCAATCTGGACAAGAAAAATCCAAAC 59.575 38.462 0.00 0.00 41.95 2.93
720 978 6.337356 TCTGGACAAGAAAAATCCAAACAAC 58.663 36.000 0.00 0.00 41.95 3.32
737 995 7.068593 TCCAAACAACATTCAGAATTGAGTCTT 59.931 33.333 3.88 0.00 34.15 3.01
794 1060 7.537596 TCCAAACAACATAATTCAGGTTCAT 57.462 32.000 0.00 0.00 0.00 2.57
809 1083 8.706492 TTCAGGTTCATTTTCAATATCAATGC 57.294 30.769 0.00 0.00 0.00 3.56
811 1085 6.480981 CAGGTTCATTTTCAATATCAATGCCC 59.519 38.462 0.00 0.00 0.00 5.36
822 1096 0.395586 TCAATGCCCGGGAGATTTGG 60.396 55.000 29.31 10.39 0.00 3.28
853 1127 1.696063 ATTCAATTCCATGGCCCTCG 58.304 50.000 6.96 0.00 0.00 4.63
864 1153 1.269958 TGGCCCTCGATATCATCCAG 58.730 55.000 0.00 0.00 0.00 3.86
869 1158 1.474478 CCTCGATATCATCCAGACGGG 59.526 57.143 3.12 0.00 38.37 5.28
872 1161 0.976641 GATATCATCCAGACGGGGCA 59.023 55.000 0.00 0.00 37.22 5.36
883 1172 3.181454 CCAGACGGGGCATTAGAGTATTT 60.181 47.826 0.00 0.00 0.00 1.40
884 1173 4.039973 CCAGACGGGGCATTAGAGTATTTA 59.960 45.833 0.00 0.00 0.00 1.40
885 1174 4.989168 CAGACGGGGCATTAGAGTATTTAC 59.011 45.833 0.00 0.00 0.00 2.01
894 1193 8.724310 GGGCATTAGAGTATTTACCCCATATAT 58.276 37.037 0.00 0.00 0.00 0.86
925 1224 2.910688 TGGTGAGTGAGTTGGACTTC 57.089 50.000 0.00 0.00 0.00 3.01
930 1229 2.630098 TGAGTGAGTTGGACTTCCTCTG 59.370 50.000 0.00 0.00 36.82 3.35
932 1231 2.630580 AGTGAGTTGGACTTCCTCTGAC 59.369 50.000 0.00 0.59 36.82 3.51
961 1260 1.002201 TGCAAATTGTTCATGCAGGGG 59.998 47.619 0.00 0.00 44.52 4.79
979 1278 1.807142 GGGTTGAGAGTAAGCAACAGC 59.193 52.381 0.00 0.00 44.59 4.40
1071 1373 0.175760 TGCTCGTGTTATCCTCTGCC 59.824 55.000 0.00 0.00 0.00 4.85
1072 1400 0.530870 GCTCGTGTTATCCTCTGCCC 60.531 60.000 0.00 0.00 0.00 5.36
1081 1409 4.415179 TGTTATCCTCTGCCCCATTTATGA 59.585 41.667 0.00 0.00 0.00 2.15
1111 1439 8.484641 ACAAATGACATGAATACTCTACTGTG 57.515 34.615 0.00 0.00 0.00 3.66
1113 1441 8.598924 CAAATGACATGAATACTCTACTGTGAC 58.401 37.037 0.00 0.00 0.00 3.67
1201 1529 5.393135 CCGAGAGAAACAGTGTAAGCATCTA 60.393 44.000 0.00 0.00 0.00 1.98
1221 1583 5.139001 TCTATCCAATGGCATTTGTGCATA 58.861 37.500 10.65 1.07 36.33 3.14
1237 1622 7.389803 TTGTGCATATATGTTTAACTGCTGT 57.610 32.000 14.14 0.00 0.00 4.40
1296 1681 8.898761 TCTGTTTGTTCTTGAGCAAATTACTTA 58.101 29.630 13.91 0.00 37.02 2.24
1298 1683 9.462174 TGTTTGTTCTTGAGCAAATTACTTATG 57.538 29.630 13.91 0.00 37.02 1.90
1347 1732 1.535896 GCCTGAGATAGACGCATCGTA 59.464 52.381 0.00 0.00 41.37 3.43
1392 1780 4.766375 CAAAACCGATATGGACTAGGTGT 58.234 43.478 0.00 0.00 42.00 4.16
1408 1796 8.105197 GGACTAGGTGTTTTCTTTATTTCCCTA 58.895 37.037 0.00 0.00 0.00 3.53
1422 1810 0.687920 TCCCTACGTGCCATGTTTCA 59.312 50.000 0.00 0.00 0.00 2.69
1487 1876 4.524328 ACCTTTTCTTGCTACCATGGAAAG 59.476 41.667 21.47 16.13 39.59 2.62
1684 2104 9.034544 GTTTCTTTGTATTCTGTTTTGCATCTT 57.965 29.630 0.00 0.00 0.00 2.40
1767 2474 8.994170 TCGTTCTCATTTCAACATATTTACACA 58.006 29.630 0.00 0.00 0.00 3.72
2060 2767 9.330063 CTTTGATGAGCCTTAGACATGTTATAA 57.670 33.333 0.00 2.07 0.00 0.98
2099 2806 2.958355 GGGCAATTGTGTAGGCATACAT 59.042 45.455 15.10 0.00 43.62 2.29
2103 2817 4.096231 GCAATTGTGTAGGCATACATCACA 59.904 41.667 15.10 5.36 43.62 3.58
2429 3190 4.873827 TGTTCAAACTGGTGTTCTACTGTC 59.126 41.667 0.00 0.00 34.96 3.51
2433 3194 5.364446 TCAAACTGGTGTTCTACTGTCCTAA 59.636 40.000 0.00 0.00 34.96 2.69
2434 3195 6.042781 TCAAACTGGTGTTCTACTGTCCTAAT 59.957 38.462 0.00 0.00 34.96 1.73
2435 3196 6.435292 AACTGGTGTTCTACTGTCCTAATT 57.565 37.500 0.00 0.00 0.00 1.40
2436 3197 6.435292 ACTGGTGTTCTACTGTCCTAATTT 57.565 37.500 0.00 0.00 0.00 1.82
2437 3198 6.465084 ACTGGTGTTCTACTGTCCTAATTTC 58.535 40.000 0.00 0.00 0.00 2.17
2438 3199 5.475719 TGGTGTTCTACTGTCCTAATTTCG 58.524 41.667 0.00 0.00 0.00 3.46
2439 3200 4.868734 GGTGTTCTACTGTCCTAATTTCGG 59.131 45.833 0.00 0.00 0.00 4.30
2440 3201 4.329256 GTGTTCTACTGTCCTAATTTCGGC 59.671 45.833 0.00 0.00 0.00 5.54
2455 3218 4.427096 TTTCGGCATTTCGCATTTTAGA 57.573 36.364 0.00 0.00 45.17 2.10
2551 3314 7.943413 TTTAACTAGTAAATGTGTACGTGCA 57.057 32.000 0.82 0.82 0.00 4.57
2552 3315 7.943413 TTAACTAGTAAATGTGTACGTGCAA 57.057 32.000 8.25 0.00 0.00 4.08
2553 3316 8.537049 TTAACTAGTAAATGTGTACGTGCAAT 57.463 30.769 8.25 1.77 0.00 3.56
2554 3317 6.403333 ACTAGTAAATGTGTACGTGCAATG 57.597 37.500 8.25 0.00 0.00 2.82
2555 3318 4.078363 AGTAAATGTGTACGTGCAATGC 57.922 40.909 8.25 0.00 0.00 3.56
2556 3319 3.500299 AGTAAATGTGTACGTGCAATGCA 59.500 39.130 8.25 2.72 35.60 3.96
2569 3332 4.550577 TGCAATGCACGTTGATATTAGG 57.449 40.909 2.72 0.00 31.71 2.69
2570 3333 3.944650 TGCAATGCACGTTGATATTAGGT 59.055 39.130 2.72 0.00 31.71 3.08
2571 3334 5.119694 TGCAATGCACGTTGATATTAGGTA 58.880 37.500 2.72 0.00 31.71 3.08
2572 3335 5.586643 TGCAATGCACGTTGATATTAGGTAA 59.413 36.000 2.72 0.00 31.71 2.85
2573 3336 6.262049 TGCAATGCACGTTGATATTAGGTAAT 59.738 34.615 2.72 0.00 31.71 1.89
2574 3337 7.442666 TGCAATGCACGTTGATATTAGGTAATA 59.557 33.333 2.72 0.00 31.71 0.98
2575 3338 8.450964 GCAATGCACGTTGATATTAGGTAATAT 58.549 33.333 0.00 2.47 40.53 1.28
2638 3401 9.793252 GCCTATTAATTATGTGATTAGCATTGG 57.207 33.333 0.00 0.00 0.00 3.16
2639 3402 9.793252 CCTATTAATTATGTGATTAGCATTGGC 57.207 33.333 0.00 0.00 41.61 4.52
2650 3413 9.478768 TGTGATTAGCATTGGCATTAATATTTG 57.521 29.630 0.00 0.00 44.61 2.32
2651 3414 8.928733 GTGATTAGCATTGGCATTAATATTTGG 58.071 33.333 0.00 0.00 44.61 3.28
2652 3415 7.603404 TGATTAGCATTGGCATTAATATTTGGC 59.397 33.333 6.72 6.72 44.61 4.52
2653 3416 5.293319 AGCATTGGCATTAATATTTGGCA 57.707 34.783 11.26 11.26 45.41 4.92
2654 3417 5.871834 AGCATTGGCATTAATATTTGGCAT 58.128 33.333 14.92 5.46 46.18 4.40
2655 3418 5.703592 AGCATTGGCATTAATATTTGGCATG 59.296 36.000 14.92 14.76 46.18 4.06
2656 3419 5.701750 GCATTGGCATTAATATTTGGCATGA 59.298 36.000 14.92 4.45 46.18 3.07
2657 3420 6.373216 GCATTGGCATTAATATTTGGCATGAT 59.627 34.615 14.92 6.25 46.18 2.45
2658 3421 7.549842 GCATTGGCATTAATATTTGGCATGATA 59.450 33.333 14.92 3.56 46.18 2.15
2659 3422 9.607988 CATTGGCATTAATATTTGGCATGATAT 57.392 29.630 14.92 5.39 46.18 1.63
2669 3432 5.911378 TTTGGCATGATATTAACTGCACA 57.089 34.783 0.00 0.00 36.34 4.57
2670 3433 4.898829 TGGCATGATATTAACTGCACAC 57.101 40.909 0.00 0.00 36.34 3.82
2671 3434 4.525996 TGGCATGATATTAACTGCACACT 58.474 39.130 0.00 0.00 36.34 3.55
2672 3435 5.679601 TGGCATGATATTAACTGCACACTA 58.320 37.500 0.00 0.00 36.34 2.74
2673 3436 6.118852 TGGCATGATATTAACTGCACACTAA 58.881 36.000 0.00 0.00 36.34 2.24
2674 3437 6.601217 TGGCATGATATTAACTGCACACTAAA 59.399 34.615 0.00 0.00 36.34 1.85
2675 3438 6.912591 GGCATGATATTAACTGCACACTAAAC 59.087 38.462 0.00 0.00 36.34 2.01
2676 3439 6.628856 GCATGATATTAACTGCACACTAAACG 59.371 38.462 0.00 0.00 34.77 3.60
2677 3440 7.676338 GCATGATATTAACTGCACACTAAACGT 60.676 37.037 0.00 0.00 34.77 3.99
2686 3449 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
2687 3450 0.859232 CACTAAACGTGTTGAGCGCT 59.141 50.000 11.27 11.27 38.84 5.92
2688 3451 1.136611 CACTAAACGTGTTGAGCGCTC 60.137 52.381 30.42 30.42 38.84 5.03
2689 3452 1.136690 CTAAACGTGTTGAGCGCTCA 58.863 50.000 35.30 35.30 37.91 4.26
2690 3453 0.856641 TAAACGTGTTGAGCGCTCAC 59.143 50.000 38.36 29.97 39.66 3.51
2691 3454 1.772063 AAACGTGTTGAGCGCTCACC 61.772 55.000 38.36 32.16 39.66 4.02
2692 3455 2.661537 CGTGTTGAGCGCTCACCA 60.662 61.111 38.36 34.47 39.66 4.17
2693 3456 2.029288 CGTGTTGAGCGCTCACCAT 61.029 57.895 35.40 1.89 39.66 3.55
2694 3457 1.568612 CGTGTTGAGCGCTCACCATT 61.569 55.000 35.40 1.02 39.66 3.16
2695 3458 0.110056 GTGTTGAGCGCTCACCATTG 60.110 55.000 35.40 0.00 39.66 2.82
2696 3459 1.236616 TGTTGAGCGCTCACCATTGG 61.237 55.000 38.36 0.00 39.66 3.16
2697 3460 0.955428 GTTGAGCGCTCACCATTGGA 60.955 55.000 38.36 20.24 39.66 3.53
2698 3461 0.674581 TTGAGCGCTCACCATTGGAG 60.675 55.000 38.36 0.83 39.66 3.86
2703 3466 3.915575 CTCACCATTGGAGCAGCC 58.084 61.111 10.37 0.00 37.10 4.85
2704 3467 1.302285 CTCACCATTGGAGCAGCCT 59.698 57.895 10.37 0.00 37.63 4.58
2705 3468 1.001764 TCACCATTGGAGCAGCCTG 60.002 57.895 10.37 0.00 37.63 4.85
2706 3469 1.001764 CACCATTGGAGCAGCCTGA 60.002 57.895 10.37 0.00 37.63 3.86
2707 3470 1.030488 CACCATTGGAGCAGCCTGAG 61.030 60.000 10.37 0.00 37.63 3.35
2708 3471 1.302285 CCATTGGAGCAGCCTGAGT 59.698 57.895 0.00 0.00 37.63 3.41
2709 3472 0.747283 CCATTGGAGCAGCCTGAGTC 60.747 60.000 0.00 0.00 37.63 3.36
2710 3473 0.035725 CATTGGAGCAGCCTGAGTCA 60.036 55.000 0.00 0.00 37.63 3.41
2711 3474 0.917533 ATTGGAGCAGCCTGAGTCAT 59.082 50.000 0.00 0.00 37.63 3.06
2712 3475 0.694771 TTGGAGCAGCCTGAGTCATT 59.305 50.000 0.00 0.00 37.63 2.57
2713 3476 0.035725 TGGAGCAGCCTGAGTCATTG 60.036 55.000 0.00 0.00 37.63 2.82
2714 3477 0.747283 GGAGCAGCCTGAGTCATTGG 60.747 60.000 0.00 0.00 0.00 3.16
2715 3478 0.251354 GAGCAGCCTGAGTCATTGGA 59.749 55.000 0.00 0.00 0.00 3.53
2716 3479 0.917533 AGCAGCCTGAGTCATTGGAT 59.082 50.000 0.00 0.00 0.00 3.41
2717 3480 1.284198 AGCAGCCTGAGTCATTGGATT 59.716 47.619 0.00 0.00 0.00 3.01
2718 3481 1.404391 GCAGCCTGAGTCATTGGATTG 59.596 52.381 0.00 1.85 0.00 2.67
2719 3482 2.942752 GCAGCCTGAGTCATTGGATTGA 60.943 50.000 0.00 0.00 0.00 2.57
2720 3483 2.681848 CAGCCTGAGTCATTGGATTGAC 59.318 50.000 2.62 0.00 45.15 3.18
2721 3484 2.019984 GCCTGAGTCATTGGATTGACC 58.980 52.381 2.62 0.00 45.80 4.02
2722 3485 2.356535 GCCTGAGTCATTGGATTGACCT 60.357 50.000 2.62 0.00 45.80 3.85
2723 3486 3.276857 CCTGAGTCATTGGATTGACCTG 58.723 50.000 0.00 0.00 45.80 4.00
2724 3487 3.054875 CCTGAGTCATTGGATTGACCTGA 60.055 47.826 0.00 0.00 45.80 3.86
2725 3488 4.384978 CCTGAGTCATTGGATTGACCTGAT 60.385 45.833 0.00 0.00 45.80 2.90
2726 3489 5.183530 TGAGTCATTGGATTGACCTGATT 57.816 39.130 1.19 0.00 45.80 2.57
2727 3490 5.573219 TGAGTCATTGGATTGACCTGATTT 58.427 37.500 1.19 0.00 45.80 2.17
2728 3491 5.416639 TGAGTCATTGGATTGACCTGATTTG 59.583 40.000 1.19 0.00 45.80 2.32
2729 3492 4.708421 AGTCATTGGATTGACCTGATTTGG 59.292 41.667 1.19 0.00 45.80 3.28
2730 3493 3.448301 TCATTGGATTGACCTGATTTGGC 59.552 43.478 0.00 0.00 39.86 4.52
2731 3494 1.462616 TGGATTGACCTGATTTGGCG 58.537 50.000 0.00 0.00 39.86 5.69
2732 3495 0.740737 GGATTGACCTGATTTGGCGG 59.259 55.000 0.00 0.00 35.41 6.13
2733 3496 0.101219 GATTGACCTGATTTGGCGGC 59.899 55.000 0.00 0.00 0.00 6.53
2734 3497 1.322538 ATTGACCTGATTTGGCGGCC 61.323 55.000 13.32 13.32 0.00 6.13
2735 3498 2.361104 GACCTGATTTGGCGGCCA 60.361 61.111 19.77 19.77 0.00 5.36
2736 3499 2.361610 ACCTGATTTGGCGGCCAG 60.362 61.111 22.59 11.89 33.81 4.85
2737 3500 3.142838 CCTGATTTGGCGGCCAGG 61.143 66.667 22.59 15.57 40.01 4.45
2738 3501 2.045045 CTGATTTGGCGGCCAGGA 60.045 61.111 22.59 15.24 33.81 3.86
2739 3502 1.454479 CTGATTTGGCGGCCAGGAT 60.454 57.895 22.59 19.24 33.81 3.24
2740 3503 1.000233 TGATTTGGCGGCCAGGATT 60.000 52.632 22.59 8.24 33.81 3.01
2741 3504 0.614415 TGATTTGGCGGCCAGGATTT 60.614 50.000 22.59 6.39 33.81 2.17
2742 3505 0.179103 GATTTGGCGGCCAGGATTTG 60.179 55.000 22.59 0.00 33.81 2.32
2743 3506 0.904394 ATTTGGCGGCCAGGATTTGT 60.904 50.000 22.59 1.71 33.81 2.83
2744 3507 1.118356 TTTGGCGGCCAGGATTTGTT 61.118 50.000 22.59 0.00 33.81 2.83
2745 3508 1.814772 TTGGCGGCCAGGATTTGTTG 61.815 55.000 22.59 0.00 33.81 3.33
2746 3509 2.573340 GCGGCCAGGATTTGTTGG 59.427 61.111 2.24 0.00 0.00 3.77
2747 3510 1.976474 GCGGCCAGGATTTGTTGGA 60.976 57.895 2.24 0.00 0.00 3.53
2748 3511 1.322538 GCGGCCAGGATTTGTTGGAT 61.323 55.000 2.24 0.00 0.00 3.41
2749 3512 0.740737 CGGCCAGGATTTGTTGGATC 59.259 55.000 2.24 0.00 0.00 3.36
2750 3513 1.683011 CGGCCAGGATTTGTTGGATCT 60.683 52.381 2.24 0.00 0.00 2.75
2751 3514 1.753073 GGCCAGGATTTGTTGGATCTG 59.247 52.381 0.00 0.00 0.00 2.90
2752 3515 1.135721 GCCAGGATTTGTTGGATCTGC 59.864 52.381 0.00 0.00 0.00 4.26
2753 3516 1.753073 CCAGGATTTGTTGGATCTGCC 59.247 52.381 0.00 0.00 37.10 4.85
2754 3517 1.753073 CAGGATTTGTTGGATCTGCCC 59.247 52.381 0.00 0.00 34.97 5.36
2755 3518 1.114627 GGATTTGTTGGATCTGCCCC 58.885 55.000 0.00 0.00 34.97 5.80
2756 3519 1.342374 GGATTTGTTGGATCTGCCCCT 60.342 52.381 0.00 0.00 34.97 4.79
2757 3520 2.460669 GATTTGTTGGATCTGCCCCTT 58.539 47.619 0.00 0.00 34.97 3.95
2758 3521 2.397044 TTTGTTGGATCTGCCCCTTT 57.603 45.000 0.00 0.00 34.97 3.11
2759 3522 1.631405 TTGTTGGATCTGCCCCTTTG 58.369 50.000 0.00 0.00 34.97 2.77
2760 3523 0.251742 TGTTGGATCTGCCCCTTTGG 60.252 55.000 0.00 0.00 34.97 3.28
2844 3607 4.759516 TGAACCGCACCTTCTTAAAATC 57.240 40.909 0.00 0.00 0.00 2.17
2846 3609 3.149005 ACCGCACCTTCTTAAAATCCA 57.851 42.857 0.00 0.00 0.00 3.41
2956 3728 2.102925 CCATTGTTGCCAAGACCAAACT 59.897 45.455 0.00 0.00 33.17 2.66
2957 3729 3.320541 CCATTGTTGCCAAGACCAAACTA 59.679 43.478 0.00 0.00 33.17 2.24
2958 3730 4.549458 CATTGTTGCCAAGACCAAACTAG 58.451 43.478 0.00 0.00 33.17 2.57
3035 3807 3.428725 GGTCAATTTGTGCTTGTGACACA 60.429 43.478 3.56 3.56 45.90 3.72
3191 6971 0.255033 AGAGCTGGCTGCAATCATCA 59.745 50.000 18.84 0.00 45.94 3.07
3248 7037 6.147164 GGTCTTTTGCCTTTAATTTTAGTGCC 59.853 38.462 0.00 0.00 0.00 5.01
3254 7043 5.184287 TGCCTTTAATTTTAGTGCCCACTAC 59.816 40.000 7.61 0.00 43.02 2.73
3256 7045 6.127451 GCCTTTAATTTTAGTGCCCACTACAT 60.127 38.462 7.61 1.50 43.02 2.29
3293 7104 3.244735 TGTTTATCAGCCACCTGTAGCAA 60.245 43.478 0.00 0.00 40.09 3.91
3296 7107 3.931907 ATCAGCCACCTGTAGCAAATA 57.068 42.857 0.00 0.00 40.09 1.40
3308 7119 5.309323 TGTAGCAAATATTGTGAGCAACC 57.691 39.130 0.00 0.00 37.44 3.77
3336 7147 5.542635 TGAACTTGTAGAGGTACCACTTGAT 59.457 40.000 17.49 0.00 0.00 2.57
3383 7194 6.830838 AGTGATCCTAATTGGGATTTGAGTTC 59.169 38.462 22.86 10.89 45.18 3.01
3400 7211 5.439721 TGAGTTCCTTATGATGGTTCATGG 58.560 41.667 0.00 0.00 42.60 3.66
3413 7224 3.323403 TGGTTCATGGGATTTGGTTGAAC 59.677 43.478 5.72 5.72 43.31 3.18
3561 7455 0.694196 GGCCCAACCTGGTTACTGTA 59.306 55.000 12.53 0.00 35.17 2.74
3564 7458 2.290705 GCCCAACCTGGTTACTGTACAT 60.291 50.000 12.53 0.00 35.17 2.29
3652 7560 6.526526 TGTTATGTGTTGCCTTTGTAGTCTA 58.473 36.000 0.00 0.00 0.00 2.59
3729 8300 7.147655 ACCATATATATGACTCCCTCCATTTCG 60.148 40.741 21.97 4.16 35.75 3.46
3743 8397 6.765989 CCCTCCATTTCGAATACATTTCACTA 59.234 38.462 0.00 0.00 0.00 2.74
3980 8642 3.290948 TGGATTATTCCCCACCTTTCG 57.709 47.619 1.24 0.00 41.83 3.46
4053 8715 3.937778 ACTAGGAGTAGGACTGGAGAC 57.062 52.381 0.00 0.00 0.00 3.36
4062 8724 2.625639 AGGACTGGAGACCATTTCTGT 58.374 47.619 0.00 0.00 33.22 3.41
4138 8801 4.239428 ACTAGGAGTAGGACTGGAGAAC 57.761 50.000 0.00 0.00 0.00 3.01
4139 8802 3.592427 ACTAGGAGTAGGACTGGAGAACA 59.408 47.826 0.00 0.00 0.00 3.18
4178 8842 4.687901 TCAGATTTCAGAACAGACCACA 57.312 40.909 0.00 0.00 0.00 4.17
4181 8845 4.394300 CAGATTTCAGAACAGACCACATCC 59.606 45.833 0.00 0.00 0.00 3.51
4187 8851 2.303022 AGAACAGACCACATCCGACATT 59.697 45.455 0.00 0.00 0.00 2.71
4200 8864 4.232188 TCCGACATTGACTAGGAGTAGT 57.768 45.455 0.00 0.00 42.59 2.73
4229 8893 4.018141 AGAATTCAGGACATGGTTCCATCA 60.018 41.667 8.44 0.00 38.25 3.07
4272 8936 6.405286 CCTGATAAGTCGAGTTGAAGATGTCT 60.405 42.308 15.84 0.00 0.00 3.41
4332 8996 6.825610 AGTCTCTTAATCATTGGGATGAGAC 58.174 40.000 10.63 10.63 45.23 3.36
4396 9060 2.745884 CGAACAGGGGCGAATGCA 60.746 61.111 0.00 0.00 45.35 3.96
4509 9174 0.867746 GTTGAATCACGACTGCTGCA 59.132 50.000 0.88 0.88 0.00 4.41
4581 9255 6.597672 ACCGCTCACTGATTTATTATGTTTGA 59.402 34.615 0.00 0.00 0.00 2.69
4584 9258 9.507280 CGCTCACTGATTTATTATGTTTGAATT 57.493 29.630 0.00 0.00 0.00 2.17
4698 9372 1.238439 CGATGACAGTGCCCAAGTTT 58.762 50.000 0.00 0.00 0.00 2.66
4816 9490 9.334947 ACTACTCTAACTTGGGTTAACTTTTTC 57.665 33.333 5.42 0.00 37.45 2.29
4832 9506 3.878160 TTTTCCTTTTTCTGCCGTGTT 57.122 38.095 0.00 0.00 0.00 3.32
4947 9621 2.335712 GGAAGACAAAGCTGCCCGG 61.336 63.158 0.00 0.00 0.00 5.73
5066 9749 4.937201 AAGGAACGAAAAAGGCAATTCT 57.063 36.364 0.00 0.00 0.00 2.40
5126 9830 2.880890 ACCTGATGTGTTTCACTCTTGC 59.119 45.455 1.72 0.00 35.11 4.01
5128 9832 3.058432 CCTGATGTGTTTCACTCTTGCTG 60.058 47.826 1.72 0.00 35.11 4.41
5139 9843 5.405935 TCACTCTTGCTGTTAGATGCTTA 57.594 39.130 0.00 0.00 0.00 3.09
5150 9855 6.459298 GCTGTTAGATGCTTATTGACTGCAAT 60.459 38.462 0.00 0.00 46.11 3.56
5171 9876 0.951558 TTCGAGGAGGTTTTGCTTGC 59.048 50.000 0.00 0.00 0.00 4.01
5271 10014 4.032703 TCTCTGCAAACAAACTTTCTGC 57.967 40.909 0.00 0.00 0.00 4.26
5335 10078 3.610637 CCCTTGTTTGGGTGCAATG 57.389 52.632 0.00 0.00 42.25 2.82
5336 10079 0.603439 CCCTTGTTTGGGTGCAATGC 60.603 55.000 0.00 0.00 42.25 3.56
5379 10122 5.482908 CAGCTTCACTGTGAGTTAGGTATT 58.517 41.667 10.77 0.00 41.86 1.89
5380 10123 6.631016 CAGCTTCACTGTGAGTTAGGTATTA 58.369 40.000 10.77 0.00 41.86 0.98
5381 10124 6.531948 CAGCTTCACTGTGAGTTAGGTATTAC 59.468 42.308 10.77 0.00 41.86 1.89
5383 10126 7.038941 AGCTTCACTGTGAGTTAGGTATTACTT 60.039 37.037 10.77 0.00 0.00 2.24
5384 10127 8.248945 GCTTCACTGTGAGTTAGGTATTACTTA 58.751 37.037 10.77 0.00 0.00 2.24
5385 10128 9.570488 CTTCACTGTGAGTTAGGTATTACTTAC 57.430 37.037 10.77 0.00 33.07 2.34
5386 10129 7.755591 TCACTGTGAGTTAGGTATTACTTACG 58.244 38.462 6.36 0.00 34.62 3.18
5387 10130 6.971184 CACTGTGAGTTAGGTATTACTTACGG 59.029 42.308 0.32 0.00 40.87 4.02
5388 10131 6.096001 ACTGTGAGTTAGGTATTACTTACGGG 59.904 42.308 0.00 0.00 39.96 5.28
5389 10132 5.360714 TGTGAGTTAGGTATTACTTACGGGG 59.639 44.000 0.00 0.00 34.62 5.73
5391 10134 5.360714 TGAGTTAGGTATTACTTACGGGGTG 59.639 44.000 0.00 0.00 0.00 4.61
5393 10136 2.755686 AGGTATTACTTACGGGGTGCT 58.244 47.619 0.00 0.00 0.00 4.40
5394 10137 2.697229 AGGTATTACTTACGGGGTGCTC 59.303 50.000 0.00 0.00 0.00 4.26
5395 10138 2.544486 GGTATTACTTACGGGGTGCTCG 60.544 54.545 0.00 0.00 0.00 5.03
5397 10140 1.832883 TTACTTACGGGGTGCTCGTA 58.167 50.000 0.00 0.00 41.38 3.43
5398 10141 1.832883 TACTTACGGGGTGCTCGTAA 58.167 50.000 0.00 0.00 46.48 3.18
5401 10144 2.766345 TTACGGGGTGCTCGTAAATT 57.234 45.000 6.61 0.00 45.94 1.82
5402 10145 2.012937 TACGGGGTGCTCGTAAATTG 57.987 50.000 0.00 0.00 39.68 2.32
5403 10146 0.322322 ACGGGGTGCTCGTAAATTGA 59.678 50.000 0.00 0.00 39.22 2.57
5404 10147 1.270947 ACGGGGTGCTCGTAAATTGAA 60.271 47.619 0.00 0.00 39.22 2.69
5405 10148 1.807742 CGGGGTGCTCGTAAATTGAAA 59.192 47.619 0.00 0.00 0.00 2.69
5406 10149 2.413634 CGGGGTGCTCGTAAATTGAAAC 60.414 50.000 0.00 0.00 0.00 2.78
5407 10150 2.094906 GGGGTGCTCGTAAATTGAAACC 60.095 50.000 0.00 0.00 0.00 3.27
5408 10151 2.413634 GGGTGCTCGTAAATTGAAACCG 60.414 50.000 0.00 0.00 0.00 4.44
5410 10153 3.058777 GGTGCTCGTAAATTGAAACCGAA 60.059 43.478 0.00 0.00 0.00 4.30
5412 10155 4.971220 GTGCTCGTAAATTGAAACCGAAAA 59.029 37.500 0.00 0.00 0.00 2.29
5415 10158 5.338822 GCTCGTAAATTGAAACCGAAAAGTC 59.661 40.000 0.00 0.00 0.00 3.01
5417 10160 4.913345 CGTAAATTGAAACCGAAAAGTCCC 59.087 41.667 0.00 0.00 0.00 4.46
5418 10161 5.278120 CGTAAATTGAAACCGAAAAGTCCCT 60.278 40.000 0.00 0.00 0.00 4.20
5419 10162 5.607939 AAATTGAAACCGAAAAGTCCCTT 57.392 34.783 0.00 0.00 0.00 3.95
5420 10163 5.607939 AATTGAAACCGAAAAGTCCCTTT 57.392 34.783 0.00 0.00 34.94 3.11
5421 10164 5.607939 ATTGAAACCGAAAAGTCCCTTTT 57.392 34.783 1.79 1.79 44.92 2.27
5423 10166 6.527057 TTGAAACCGAAAAGTCCCTTTTTA 57.473 33.333 3.69 0.00 42.72 1.52
5426 10169 3.558033 ACCGAAAAGTCCCTTTTTAGCA 58.442 40.909 3.69 0.00 42.72 3.49
5427 10170 4.149598 ACCGAAAAGTCCCTTTTTAGCAT 58.850 39.130 3.69 0.00 42.72 3.79
5428 10171 4.022329 ACCGAAAAGTCCCTTTTTAGCATG 60.022 41.667 3.69 0.00 42.72 4.06
5429 10172 4.217550 CCGAAAAGTCCCTTTTTAGCATGA 59.782 41.667 0.00 0.00 42.72 3.07
5431 10174 5.801947 CGAAAAGTCCCTTTTTAGCATGATG 59.198 40.000 0.00 0.00 42.72 3.07
5432 10175 4.725790 AAGTCCCTTTTTAGCATGATGC 57.274 40.909 9.89 9.89 45.46 3.91
5433 10176 4.774200 AAAGTCCCTTTTTAGCATGATGCT 59.226 37.500 24.57 24.57 43.06 3.79
5434 10177 5.337009 AAAGTCCCTTTTTAGCATGATGCTG 60.337 40.000 28.78 12.10 41.58 4.41
5435 10178 8.732967 AAAGTCCCTTTTTAGCATGATGCTGC 62.733 42.308 28.78 0.00 41.58 5.25
5443 10186 2.311450 GCATGATGCTGCTACAATCG 57.689 50.000 10.72 0.00 40.96 3.34
5446 10189 2.689553 TGATGCTGCTACAATCGGAA 57.310 45.000 0.00 0.00 0.00 4.30
5448 10191 1.869767 GATGCTGCTACAATCGGAAGG 59.130 52.381 0.00 0.00 0.00 3.46
5449 10192 0.901827 TGCTGCTACAATCGGAAGGA 59.098 50.000 0.00 0.00 0.00 3.36
5450 10193 1.277842 TGCTGCTACAATCGGAAGGAA 59.722 47.619 0.00 0.00 0.00 3.36
5451 10194 1.936547 GCTGCTACAATCGGAAGGAAG 59.063 52.381 0.00 0.00 0.00 3.46
5452 10195 2.555199 CTGCTACAATCGGAAGGAAGG 58.445 52.381 0.00 0.00 0.00 3.46
5453 10196 2.168521 CTGCTACAATCGGAAGGAAGGA 59.831 50.000 0.00 0.00 0.00 3.36
5454 10197 2.569853 TGCTACAATCGGAAGGAAGGAA 59.430 45.455 0.00 0.00 0.00 3.36
5455 10198 3.008594 TGCTACAATCGGAAGGAAGGAAA 59.991 43.478 0.00 0.00 0.00 3.13
5456 10199 3.374367 GCTACAATCGGAAGGAAGGAAAC 59.626 47.826 0.00 0.00 0.00 2.78
5458 10201 4.034285 ACAATCGGAAGGAAGGAAACAT 57.966 40.909 0.00 0.00 0.00 2.71
5459 10202 3.758554 ACAATCGGAAGGAAGGAAACATG 59.241 43.478 0.00 0.00 0.00 3.21
5460 10203 4.009675 CAATCGGAAGGAAGGAAACATGA 58.990 43.478 0.00 0.00 0.00 3.07
5461 10204 4.510167 ATCGGAAGGAAGGAAACATGAT 57.490 40.909 0.00 0.00 0.00 2.45
5463 10206 5.630415 TCGGAAGGAAGGAAACATGATAT 57.370 39.130 0.00 0.00 0.00 1.63
5465 10208 7.316393 TCGGAAGGAAGGAAACATGATATAT 57.684 36.000 0.00 0.00 0.00 0.86
5467 10210 6.936900 CGGAAGGAAGGAAACATGATATATGT 59.063 38.462 0.00 0.00 0.00 2.29
5468 10211 8.094548 CGGAAGGAAGGAAACATGATATATGTA 58.905 37.037 0.00 0.00 0.00 2.29
5469 10212 9.220767 GGAAGGAAGGAAACATGATATATGTAC 57.779 37.037 0.00 0.00 0.00 2.90
5472 10215 9.386122 AGGAAGGAAACATGATATATGTACTCT 57.614 33.333 0.00 0.00 0.00 3.24
5473 10216 9.646427 GGAAGGAAACATGATATATGTACTCTC 57.354 37.037 0.00 0.00 0.00 3.20
5476 10219 9.373450 AGGAAACATGATATATGTACTCTCAGT 57.627 33.333 0.00 0.00 0.00 3.41
5479 10222 9.755804 AAACATGATATATGTACTCTCAGTGTG 57.244 33.333 0.00 0.00 0.00 3.82
5480 10223 8.697507 ACATGATATATGTACTCTCAGTGTGA 57.302 34.615 0.00 0.00 0.00 3.58
5481 10224 9.136323 ACATGATATATGTACTCTCAGTGTGAA 57.864 33.333 0.00 0.00 0.00 3.18
5490 10233 7.258441 TGTACTCTCAGTGTGAATATAACTGC 58.742 38.462 0.00 0.00 40.89 4.40
5491 10234 6.286240 ACTCTCAGTGTGAATATAACTGCA 57.714 37.500 0.00 0.00 40.89 4.41
5492 10235 6.882656 ACTCTCAGTGTGAATATAACTGCAT 58.117 36.000 0.00 0.00 40.89 3.96
5493 10236 6.983307 ACTCTCAGTGTGAATATAACTGCATC 59.017 38.462 0.00 0.00 40.89 3.91
5495 10238 7.503549 TCTCAGTGTGAATATAACTGCATCAT 58.496 34.615 0.00 0.00 40.89 2.45
5496 10239 7.654923 TCTCAGTGTGAATATAACTGCATCATC 59.345 37.037 0.00 0.00 40.89 2.92
5498 10241 7.440255 TCAGTGTGAATATAACTGCATCATCAG 59.560 37.037 0.00 0.00 40.89 2.90
5499 10242 7.440255 CAGTGTGAATATAACTGCATCATCAGA 59.560 37.037 0.00 0.00 35.34 3.27
5500 10243 7.440556 AGTGTGAATATAACTGCATCATCAGAC 59.559 37.037 0.00 0.00 37.51 3.51
5501 10244 7.225341 GTGTGAATATAACTGCATCATCAGACA 59.775 37.037 0.00 0.00 37.51 3.41
5502 10245 7.769970 TGTGAATATAACTGCATCATCAGACAA 59.230 33.333 0.00 0.00 37.51 3.18
5503 10246 8.781196 GTGAATATAACTGCATCATCAGACAAT 58.219 33.333 0.00 0.00 37.51 2.71
5504 10247 9.346005 TGAATATAACTGCATCATCAGACAATT 57.654 29.630 0.00 0.00 37.51 2.32
5510 10253 7.458409 ACTGCATCATCAGACAATTAAAAGT 57.542 32.000 0.00 0.00 37.51 2.66
5512 10255 6.855836 TGCATCATCAGACAATTAAAAGTCC 58.144 36.000 6.95 0.00 35.38 3.85
5513 10256 6.433716 TGCATCATCAGACAATTAAAAGTCCA 59.566 34.615 6.95 0.00 35.38 4.02
5514 10257 6.749118 GCATCATCAGACAATTAAAAGTCCAC 59.251 38.462 6.95 0.00 35.38 4.02
5515 10258 6.817765 TCATCAGACAATTAAAAGTCCACC 57.182 37.500 6.95 0.00 35.38 4.61
5516 10259 5.710099 TCATCAGACAATTAAAAGTCCACCC 59.290 40.000 6.95 0.00 35.38 4.61
5517 10260 5.055265 TCAGACAATTAAAAGTCCACCCA 57.945 39.130 6.95 0.00 35.38 4.51
5518 10261 5.450453 TCAGACAATTAAAAGTCCACCCAA 58.550 37.500 6.95 0.00 35.38 4.12
5519 10262 5.894393 TCAGACAATTAAAAGTCCACCCAAA 59.106 36.000 6.95 0.00 35.38 3.28
5522 10265 5.364778 ACAATTAAAAGTCCACCCAAAAGC 58.635 37.500 0.00 0.00 0.00 3.51
5524 10267 6.325286 ACAATTAAAAGTCCACCCAAAAGCTA 59.675 34.615 0.00 0.00 0.00 3.32
5525 10268 5.777850 TTAAAAGTCCACCCAAAAGCTAC 57.222 39.130 0.00 0.00 0.00 3.58
5526 10269 2.287977 AAGTCCACCCAAAAGCTACC 57.712 50.000 0.00 0.00 0.00 3.18
5527 10270 1.446016 AGTCCACCCAAAAGCTACCT 58.554 50.000 0.00 0.00 0.00 3.08
5528 10271 1.780919 AGTCCACCCAAAAGCTACCTT 59.219 47.619 0.00 0.00 0.00 3.50
5529 10272 2.177016 AGTCCACCCAAAAGCTACCTTT 59.823 45.455 0.00 0.00 42.93 3.11
5530 10273 2.557056 GTCCACCCAAAAGCTACCTTTC 59.443 50.000 0.00 0.00 40.30 2.62
5532 10275 2.490902 CCACCCAAAAGCTACCTTTCCT 60.491 50.000 0.00 0.00 40.30 3.36
5533 10276 3.230976 CACCCAAAAGCTACCTTTCCTT 58.769 45.455 0.00 0.00 40.30 3.36
5536 10279 4.719773 ACCCAAAAGCTACCTTTCCTTTTT 59.280 37.500 0.00 0.00 40.30 1.94
5537 10280 5.163343 ACCCAAAAGCTACCTTTCCTTTTTC 60.163 40.000 0.00 0.00 40.30 2.29
5538 10281 5.070446 CCCAAAAGCTACCTTTCCTTTTTCT 59.930 40.000 0.00 0.00 40.30 2.52
5539 10282 6.408092 CCCAAAAGCTACCTTTCCTTTTTCTT 60.408 38.462 0.00 0.00 40.30 2.52
5540 10283 7.047891 CCAAAAGCTACCTTTCCTTTTTCTTT 58.952 34.615 0.00 0.00 40.30 2.52
5543 10286 6.406692 AGCTACCTTTCCTTTTTCTTTTCC 57.593 37.500 0.00 0.00 0.00 3.13
5544 10287 6.136857 AGCTACCTTTCCTTTTTCTTTTCCT 58.863 36.000 0.00 0.00 0.00 3.36
5545 10288 6.040955 AGCTACCTTTCCTTTTTCTTTTCCTG 59.959 38.462 0.00 0.00 0.00 3.86
5546 10289 5.614324 ACCTTTCCTTTTTCTTTTCCTGG 57.386 39.130 0.00 0.00 0.00 4.45
5547 10290 5.030147 ACCTTTCCTTTTTCTTTTCCTGGT 58.970 37.500 0.00 0.00 0.00 4.00
5548 10291 6.199376 ACCTTTCCTTTTTCTTTTCCTGGTA 58.801 36.000 0.00 0.00 0.00 3.25
5549 10292 6.323996 ACCTTTCCTTTTTCTTTTCCTGGTAG 59.676 38.462 0.00 0.00 0.00 3.18
5550 10293 6.239317 CCTTTCCTTTTTCTTTTCCTGGTAGG 60.239 42.308 0.00 0.00 36.46 3.18
5551 10294 4.736473 TCCTTTTTCTTTTCCTGGTAGGG 58.264 43.478 0.00 0.00 35.59 3.53
5552 10295 4.417518 TCCTTTTTCTTTTCCTGGTAGGGA 59.582 41.667 0.00 0.00 35.59 4.20
5553 10296 5.103430 TCCTTTTTCTTTTCCTGGTAGGGAA 60.103 40.000 0.00 0.00 42.86 3.97
5561 10304 3.926058 TCCTGGTAGGGAAATGCTAAC 57.074 47.619 0.00 0.00 35.59 2.34
5601 10344 9.791820 GTATTAAAAGTACAAAAAGTGTGTGGT 57.208 29.630 0.00 0.00 41.89 4.16
5606 10349 8.751302 AAAGTACAAAAAGTGTGTGGTAAAAG 57.249 30.769 0.00 0.00 41.89 2.27
5610 10353 6.988522 ACAAAAAGTGTGTGGTAAAAGTTCT 58.011 32.000 0.00 0.00 39.72 3.01
5615 10358 6.827586 AGTGTGTGGTAAAAGTTCTTGAAA 57.172 33.333 0.00 0.00 0.00 2.69
5616 10359 7.404671 AGTGTGTGGTAAAAGTTCTTGAAAT 57.595 32.000 0.00 0.00 0.00 2.17
5617 10360 7.836842 AGTGTGTGGTAAAAGTTCTTGAAATT 58.163 30.769 0.00 0.00 0.00 1.82
5619 10362 7.010091 GTGTGTGGTAAAAGTTCTTGAAATTGG 59.990 37.037 0.00 0.00 0.00 3.16
5621 10364 7.435192 GTGTGGTAAAAGTTCTTGAAATTGGAG 59.565 37.037 0.00 0.00 0.00 3.86
5622 10365 6.420903 GTGGTAAAAGTTCTTGAAATTGGAGC 59.579 38.462 0.00 0.17 0.00 4.70
5623 10366 6.097554 TGGTAAAAGTTCTTGAAATTGGAGCA 59.902 34.615 0.00 2.41 0.00 4.26
5624 10367 6.642540 GGTAAAAGTTCTTGAAATTGGAGCAG 59.357 38.462 0.00 0.00 0.00 4.24
5625 10368 5.859205 AAAGTTCTTGAAATTGGAGCAGT 57.141 34.783 0.00 0.00 0.00 4.40
5626 10369 6.959639 AAAGTTCTTGAAATTGGAGCAGTA 57.040 33.333 0.00 0.00 0.00 2.74
5627 10370 7.530426 AAAGTTCTTGAAATTGGAGCAGTAT 57.470 32.000 0.00 0.00 0.00 2.12
5628 10371 8.635765 AAAGTTCTTGAAATTGGAGCAGTATA 57.364 30.769 0.00 0.00 0.00 1.47
5629 10372 8.814038 AAGTTCTTGAAATTGGAGCAGTATAT 57.186 30.769 0.00 0.00 0.00 0.86
5630 10373 8.443953 AGTTCTTGAAATTGGAGCAGTATATC 57.556 34.615 0.00 0.00 0.00 1.63
5644 10387 7.039784 GGAGCAGTATATCTCTGAACTCTGATT 60.040 40.741 10.72 0.00 35.20 2.57
5645 10388 8.932434 AGCAGTATATCTCTGAACTCTGATTA 57.068 34.615 10.72 0.00 35.20 1.75
5653 10432 6.936279 TCTCTGAACTCTGATTAAATTCGGT 58.064 36.000 0.00 0.00 0.00 4.69
5721 10505 4.162131 GGGTGATAAAATTGCCAACTGGAT 59.838 41.667 0.00 0.00 37.39 3.41
5722 10506 5.111293 GGTGATAAAATTGCCAACTGGATG 58.889 41.667 0.00 0.00 37.39 3.51
5724 10508 5.022122 TGATAAAATTGCCAACTGGATGGA 58.978 37.500 0.00 0.00 43.54 3.41
5726 10510 4.914177 AAAATTGCCAACTGGATGGAAT 57.086 36.364 0.00 1.49 43.54 3.01
5727 10511 3.899052 AATTGCCAACTGGATGGAATG 57.101 42.857 0.00 0.00 43.54 2.67
5741 10533 4.324254 GGATGGAATGGTGGAGTACTCAAA 60.324 45.833 23.91 9.19 0.00 2.69
5746 10538 5.476945 GGAATGGTGGAGTACTCAAATTTGT 59.523 40.000 23.91 2.40 0.00 2.83
5774 10566 1.330655 GGCGACCCTCTTCTCCATCA 61.331 60.000 0.00 0.00 0.00 3.07
5782 10574 1.207570 CTCTTCTCCATCACTGCTGCT 59.792 52.381 0.00 0.00 0.00 4.24
5783 10575 1.206610 TCTTCTCCATCACTGCTGCTC 59.793 52.381 0.00 0.00 0.00 4.26
5786 10578 0.462225 CTCCATCACTGCTGCTCCTG 60.462 60.000 0.00 0.00 0.00 3.86
5826 10650 1.126079 CGTGTCTGCGTCGTTTACTT 58.874 50.000 0.00 0.00 0.00 2.24
5889 10731 2.760092 GCCAAATAACTTGCTGGATCCA 59.240 45.455 15.27 15.27 33.27 3.41
5890 10732 3.385755 GCCAAATAACTTGCTGGATCCAT 59.614 43.478 16.63 1.02 33.27 3.41
5891 10733 4.584325 GCCAAATAACTTGCTGGATCCATA 59.416 41.667 16.63 3.69 33.27 2.74
5892 10734 5.507985 GCCAAATAACTTGCTGGATCCATAC 60.508 44.000 16.63 11.45 33.27 2.39
5893 10735 5.829924 CCAAATAACTTGCTGGATCCATACT 59.170 40.000 16.63 0.00 33.27 2.12
5894 10736 6.016777 CCAAATAACTTGCTGGATCCATACTC 60.017 42.308 16.63 5.74 33.27 2.59
5895 10737 2.898729 ACTTGCTGGATCCATACTCG 57.101 50.000 16.63 4.00 0.00 4.18
5896 10738 1.202580 ACTTGCTGGATCCATACTCGC 60.203 52.381 16.63 15.32 0.00 5.03
5897 10739 0.249447 TTGCTGGATCCATACTCGCG 60.249 55.000 16.63 0.00 0.00 5.87
5966 10808 8.804204 AGAAATCTTGAAATCTCAAAGATTGCT 58.196 29.630 10.70 10.70 43.67 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 87 3.912899 CCCAAAGGCATCACCAAAC 57.087 52.632 0.00 0.00 43.14 2.93
123 128 3.146218 AAAAATGTGGAGGCTGGCA 57.854 47.368 3.38 0.00 0.00 4.92
143 162 6.299141 GCCAAATATGTGGAGGATCTTCTAA 58.701 40.000 16.77 0.00 41.65 2.10
298 326 4.348495 AGGGAGAAAGGCGGGGGA 62.348 66.667 0.00 0.00 0.00 4.81
383 411 4.329545 GCTTCTGGCCGTGGTGGA 62.330 66.667 0.00 0.00 42.00 4.02
470 509 2.817396 GAGCAGGACAAGCGGCTC 60.817 66.667 1.45 0.00 44.97 4.70
471 510 4.400961 GGAGCAGGACAAGCGGCT 62.401 66.667 0.00 0.00 39.75 5.52
476 515 0.253327 GGTAAGGGGAGCAGGACAAG 59.747 60.000 0.00 0.00 0.00 3.16
477 516 1.205460 GGGTAAGGGGAGCAGGACAA 61.205 60.000 0.00 0.00 0.00 3.18
478 517 1.615424 GGGTAAGGGGAGCAGGACA 60.615 63.158 0.00 0.00 0.00 4.02
479 518 2.732619 CGGGTAAGGGGAGCAGGAC 61.733 68.421 0.00 0.00 0.00 3.85
481 520 3.480133 CCGGGTAAGGGGAGCAGG 61.480 72.222 0.00 0.00 0.00 4.85
482 521 2.298661 AACCGGGTAAGGGGAGCAG 61.299 63.158 6.32 0.00 35.02 4.24
484 523 2.271173 CAACCGGGTAAGGGGAGC 59.729 66.667 6.32 0.00 35.02 4.70
486 525 3.332385 GGCAACCGGGTAAGGGGA 61.332 66.667 6.32 0.00 35.02 4.81
522 561 2.817834 TACAATCGCAGCCGCCAC 60.818 61.111 0.00 0.00 33.11 5.01
533 572 6.310224 ACAAAAACAACAGCACTTGTACAATC 59.690 34.615 9.13 1.85 39.73 2.67
544 583 5.919707 CAGCACATATACAAAAACAACAGCA 59.080 36.000 0.00 0.00 0.00 4.41
593 649 8.896744 CAACATGTGAATATAGTTGTGAAGGAT 58.103 33.333 0.00 0.00 35.93 3.24
597 653 7.446001 TGCAACATGTGAATATAGTTGTGAA 57.554 32.000 0.00 0.00 41.07 3.18
600 656 8.737168 AGTATGCAACATGTGAATATAGTTGT 57.263 30.769 0.00 0.00 41.07 3.32
601 657 9.442033 CAAGTATGCAACATGTGAATATAGTTG 57.558 33.333 16.94 16.94 41.71 3.16
695 953 6.729690 TGTTTGGATTTTTCTTGTCCAGAT 57.270 33.333 0.00 0.00 42.54 2.90
697 955 6.105333 TGTTGTTTGGATTTTTCTTGTCCAG 58.895 36.000 0.00 0.00 42.54 3.86
705 963 9.654417 CAATTCTGAATGTTGTTTGGATTTTTC 57.346 29.630 3.22 0.00 0.00 2.29
706 964 9.393512 TCAATTCTGAATGTTGTTTGGATTTTT 57.606 25.926 3.22 0.00 0.00 1.94
708 966 8.206189 ACTCAATTCTGAATGTTGTTTGGATTT 58.794 29.630 3.22 0.00 0.00 2.17
709 967 7.729116 ACTCAATTCTGAATGTTGTTTGGATT 58.271 30.769 3.22 0.00 0.00 3.01
717 975 8.080417 ACATGAAAGACTCAATTCTGAATGTTG 58.920 33.333 3.22 0.60 37.67 3.33
720 978 7.813645 TCACATGAAAGACTCAATTCTGAATG 58.186 34.615 3.22 0.00 37.67 2.67
737 995 4.149511 TGACACTTGGAACTCACATGAA 57.850 40.909 0.00 0.00 0.00 2.57
794 1060 3.636300 CTCCCGGGCATTGATATTGAAAA 59.364 43.478 18.49 0.00 0.00 2.29
809 1083 1.478654 CCCAATACCAAATCTCCCGGG 60.479 57.143 16.85 16.85 0.00 5.73
811 1085 2.572290 GTCCCAATACCAAATCTCCCG 58.428 52.381 0.00 0.00 0.00 5.14
822 1096 5.930837 TGGAATTGAATTGGTCCCAATAC 57.069 39.130 11.80 0.00 44.86 1.89
853 1127 0.976641 TGCCCCGTCTGGATGATATC 59.023 55.000 0.00 0.00 37.49 1.63
864 1153 4.313282 GGTAAATACTCTAATGCCCCGTC 58.687 47.826 0.00 0.00 0.00 4.79
869 1158 9.561069 CATATATGGGGTAAATACTCTAATGCC 57.439 37.037 4.68 0.00 0.00 4.40
883 1172 7.237982 CCAAATTTGGTCTCATATATGGGGTA 58.762 38.462 26.34 0.00 43.43 3.69
884 1173 6.077322 CCAAATTTGGTCTCATATATGGGGT 58.923 40.000 26.34 0.00 43.43 4.95
885 1174 6.594788 CCAAATTTGGTCTCATATATGGGG 57.405 41.667 26.34 6.53 43.43 4.96
925 1224 1.227380 GCACTATGCCGGTCAGAGG 60.227 63.158 19.78 12.19 38.31 3.69
930 1229 1.472480 ACAATTTGCACTATGCCGGTC 59.528 47.619 1.90 0.00 44.23 4.79
932 1231 2.094803 TGAACAATTTGCACTATGCCGG 60.095 45.455 0.00 0.00 44.23 6.13
961 1260 2.155924 GTCGCTGTTGCTTACTCTCAAC 59.844 50.000 0.00 0.00 41.99 3.18
979 1278 2.358737 GCCAAGTGGGACAGGTCG 60.359 66.667 0.00 0.00 41.80 4.79
1015 1316 3.055167 TCCATGAGGATGTCATCAACGTT 60.055 43.478 14.72 0.00 44.73 3.99
1071 1373 9.251792 CATGTCATTTGTACAATCATAAATGGG 57.748 33.333 9.56 0.00 39.65 4.00
1111 1439 2.484264 ACAACCGAAATAAGCTGCAGTC 59.516 45.455 16.64 7.83 0.00 3.51
1113 1441 3.559238 AACAACCGAAATAAGCTGCAG 57.441 42.857 10.11 10.11 0.00 4.41
1221 1583 5.163519 GCCCATCAACAGCAGTTAAACATAT 60.164 40.000 0.00 0.00 35.85 1.78
1305 1690 8.677300 CAGGCAAATATCATTTAACTAGTGTGT 58.323 33.333 0.00 0.00 0.00 3.72
1307 1692 9.113838 CTCAGGCAAATATCATTTAACTAGTGT 57.886 33.333 0.00 0.00 0.00 3.55
1308 1693 9.330063 TCTCAGGCAAATATCATTTAACTAGTG 57.670 33.333 0.00 0.00 0.00 2.74
1327 1712 0.312416 ACGATGCGTCTATCTCAGGC 59.688 55.000 4.05 0.00 33.69 4.85
1339 1724 1.926510 TGAGCAAGAATGTACGATGCG 59.073 47.619 0.00 0.00 41.72 4.73
1347 1732 6.514947 TGCAAACTAAAATGAGCAAGAATGT 58.485 32.000 0.00 0.00 0.00 2.71
1392 1780 5.071370 TGGCACGTAGGGAAATAAAGAAAA 58.929 37.500 0.00 0.00 0.00 2.29
1408 1796 0.597568 CACCATGAAACATGGCACGT 59.402 50.000 24.77 7.92 42.82 4.49
1422 1810 2.979678 ACTCCCAGTTAGTGTTCACCAT 59.020 45.455 0.00 0.00 0.00 3.55
1487 1876 4.157105 ACCAGGTAAAATACGCCATTTCAC 59.843 41.667 0.00 0.00 35.74 3.18
1767 2474 2.744202 CCGAGTTCTGCAAGCAAAGTAT 59.256 45.455 0.00 0.00 0.00 2.12
1977 2684 9.935241 TTCTACCAAAGATGATATAGAAGCATC 57.065 33.333 0.00 0.00 38.89 3.91
2060 2767 3.199071 TGCCCGGTTATTGTAACTGAGAT 59.801 43.478 0.00 0.00 0.00 2.75
2099 2806 8.264347 TGCAGAAAGGATAATGTACTATTGTGA 58.736 33.333 0.00 0.00 0.00 3.58
2167 2881 5.105063 TGATGACTGAAACTATCTTGCTCG 58.895 41.667 0.00 0.00 0.00 5.03
2429 3190 2.842208 TGCGAAATGCCGAAATTAGG 57.158 45.000 0.00 0.00 45.60 2.69
2433 3194 4.992688 TCTAAAATGCGAAATGCCGAAAT 58.007 34.783 0.00 0.00 45.60 2.17
2434 3195 4.427096 TCTAAAATGCGAAATGCCGAAA 57.573 36.364 0.00 0.00 45.60 3.46
2435 3196 4.427096 TTCTAAAATGCGAAATGCCGAA 57.573 36.364 0.00 0.00 45.60 4.30
2436 3197 4.411327 CTTTCTAAAATGCGAAATGCCGA 58.589 39.130 0.00 0.00 45.60 5.54
2437 3198 3.000773 GCTTTCTAAAATGCGAAATGCCG 60.001 43.478 0.00 0.00 45.60 5.69
2438 3199 4.176271 AGCTTTCTAAAATGCGAAATGCC 58.824 39.130 0.00 0.00 45.60 4.40
2439 3200 4.266265 GGAGCTTTCTAAAATGCGAAATGC 59.734 41.667 0.00 0.00 46.70 3.56
2440 3201 4.800471 GGGAGCTTTCTAAAATGCGAAATG 59.200 41.667 0.00 0.00 39.76 2.32
2455 3218 0.474660 AGTGGACAGAGGGGAGCTTT 60.475 55.000 0.00 0.00 0.00 3.51
2531 3294 5.163893 GCATTGCACGTACACATTTACTAGT 60.164 40.000 3.15 0.00 0.00 2.57
2532 3295 5.163903 TGCATTGCACGTACACATTTACTAG 60.164 40.000 7.38 0.00 31.71 2.57
2533 3296 4.691216 TGCATTGCACGTACACATTTACTA 59.309 37.500 7.38 0.00 31.71 1.82
2534 3297 3.500299 TGCATTGCACGTACACATTTACT 59.500 39.130 7.38 0.00 31.71 2.24
2535 3298 3.816091 TGCATTGCACGTACACATTTAC 58.184 40.909 7.38 0.00 31.71 2.01
2548 3311 3.944650 ACCTAATATCAACGTGCATTGCA 59.055 39.130 7.38 7.38 35.60 4.08
2549 3312 4.552166 ACCTAATATCAACGTGCATTGC 57.448 40.909 0.46 0.46 0.00 3.56
2612 3375 9.793252 CCAATGCTAATCACATAATTAATAGGC 57.207 33.333 0.00 0.00 0.00 3.93
2613 3376 9.793252 GCCAATGCTAATCACATAATTAATAGG 57.207 33.333 0.00 0.00 33.53 2.57
2624 3387 9.478768 CAAATATTAATGCCAATGCTAATCACA 57.521 29.630 0.00 0.00 38.71 3.58
2625 3388 8.928733 CCAAATATTAATGCCAATGCTAATCAC 58.071 33.333 0.00 0.00 38.71 3.06
2626 3389 7.603404 GCCAAATATTAATGCCAATGCTAATCA 59.397 33.333 0.00 0.00 38.71 2.57
2627 3390 7.603404 TGCCAAATATTAATGCCAATGCTAATC 59.397 33.333 0.00 0.00 38.71 1.75
2628 3391 7.451732 TGCCAAATATTAATGCCAATGCTAAT 58.548 30.769 0.00 0.00 38.71 1.73
2629 3392 6.824553 TGCCAAATATTAATGCCAATGCTAA 58.175 32.000 0.00 0.00 38.71 3.09
2630 3393 6.416631 TGCCAAATATTAATGCCAATGCTA 57.583 33.333 0.00 0.00 38.71 3.49
2631 3394 5.293319 TGCCAAATATTAATGCCAATGCT 57.707 34.783 0.00 0.00 38.71 3.79
2632 3395 5.701750 TCATGCCAAATATTAATGCCAATGC 59.298 36.000 0.00 0.00 38.26 3.56
2633 3396 7.915293 ATCATGCCAAATATTAATGCCAATG 57.085 32.000 0.00 0.00 0.00 2.82
2643 3406 8.640651 TGTGCAGTTAATATCATGCCAAATATT 58.359 29.630 0.00 3.64 37.89 1.28
2644 3407 8.084073 GTGTGCAGTTAATATCATGCCAAATAT 58.916 33.333 0.00 0.00 37.89 1.28
2645 3408 7.285172 AGTGTGCAGTTAATATCATGCCAAATA 59.715 33.333 0.00 0.00 37.89 1.40
2646 3409 6.097270 AGTGTGCAGTTAATATCATGCCAAAT 59.903 34.615 0.00 0.00 37.89 2.32
2647 3410 5.418524 AGTGTGCAGTTAATATCATGCCAAA 59.581 36.000 0.00 0.00 37.89 3.28
2648 3411 4.949238 AGTGTGCAGTTAATATCATGCCAA 59.051 37.500 0.00 0.00 37.89 4.52
2649 3412 4.525996 AGTGTGCAGTTAATATCATGCCA 58.474 39.130 0.00 0.00 37.89 4.92
2650 3413 6.618287 TTAGTGTGCAGTTAATATCATGCC 57.382 37.500 0.00 0.00 37.89 4.40
2651 3414 6.628856 CGTTTAGTGTGCAGTTAATATCATGC 59.371 38.462 0.00 0.00 39.14 4.06
2652 3415 7.635973 CACGTTTAGTGTGCAGTTAATATCATG 59.364 37.037 0.00 0.00 45.51 3.07
2653 3416 7.684670 CACGTTTAGTGTGCAGTTAATATCAT 58.315 34.615 0.00 0.00 45.51 2.45
2654 3417 7.056002 CACGTTTAGTGTGCAGTTAATATCA 57.944 36.000 0.00 0.00 45.51 2.15
2668 3431 3.675666 TGAGCGCTCAACACGTTTAGTG 61.676 50.000 36.62 1.23 44.66 2.74
2669 3432 1.137513 GAGCGCTCAACACGTTTAGT 58.862 50.000 31.91 0.00 0.00 2.24
2670 3433 1.136611 GTGAGCGCTCAACACGTTTAG 60.137 52.381 39.63 0.00 41.85 1.85
2671 3434 0.856641 GTGAGCGCTCAACACGTTTA 59.143 50.000 39.63 13.11 41.85 2.01
2672 3435 1.641677 GTGAGCGCTCAACACGTTT 59.358 52.632 39.63 0.00 41.85 3.60
2673 3436 2.244651 GGTGAGCGCTCAACACGTT 61.245 57.895 42.62 4.93 46.18 3.99
2674 3437 2.661866 GGTGAGCGCTCAACACGT 60.662 61.111 42.62 5.80 46.18 4.49
2679 3442 0.674581 CTCCAATGGTGAGCGCTCAA 60.675 55.000 39.63 26.77 41.85 3.02
2680 3443 1.078918 CTCCAATGGTGAGCGCTCA 60.079 57.895 35.30 35.30 37.24 4.26
2681 3444 2.467826 GCTCCAATGGTGAGCGCTC 61.468 63.158 30.42 30.42 45.05 5.03
2682 3445 2.437359 GCTCCAATGGTGAGCGCT 60.437 61.111 11.27 11.27 45.05 5.92
2686 3449 1.030488 CAGGCTGCTCCAATGGTGAG 61.030 60.000 0.00 0.00 37.29 3.51
2687 3450 1.001764 CAGGCTGCTCCAATGGTGA 60.002 57.895 0.00 0.00 37.29 4.02
2688 3451 1.001764 TCAGGCTGCTCCAATGGTG 60.002 57.895 10.34 0.00 37.29 4.17
2689 3452 1.302285 CTCAGGCTGCTCCAATGGT 59.698 57.895 10.34 0.00 37.29 3.55
2690 3453 0.747283 GACTCAGGCTGCTCCAATGG 60.747 60.000 10.34 0.00 37.29 3.16
2691 3454 0.035725 TGACTCAGGCTGCTCCAATG 60.036 55.000 10.34 0.00 37.29 2.82
2692 3455 0.917533 ATGACTCAGGCTGCTCCAAT 59.082 50.000 10.34 0.00 37.29 3.16
2693 3456 0.694771 AATGACTCAGGCTGCTCCAA 59.305 50.000 10.34 0.00 37.29 3.53
2694 3457 0.035725 CAATGACTCAGGCTGCTCCA 60.036 55.000 10.34 7.29 37.29 3.86
2695 3458 0.747283 CCAATGACTCAGGCTGCTCC 60.747 60.000 10.34 1.21 0.00 4.70
2696 3459 0.251354 TCCAATGACTCAGGCTGCTC 59.749 55.000 10.34 7.33 0.00 4.26
2697 3460 0.917533 ATCCAATGACTCAGGCTGCT 59.082 50.000 10.34 0.00 0.00 4.24
2698 3461 1.404391 CAATCCAATGACTCAGGCTGC 59.596 52.381 10.34 0.00 0.00 5.25
2699 3462 2.681848 GTCAATCCAATGACTCAGGCTG 59.318 50.000 8.58 8.58 44.98 4.85
2700 3463 2.996631 GTCAATCCAATGACTCAGGCT 58.003 47.619 0.38 0.00 44.98 4.58
2708 3471 3.448301 GCCAAATCAGGTCAATCCAATGA 59.552 43.478 0.00 0.00 39.02 2.57
2709 3472 3.735820 CGCCAAATCAGGTCAATCCAATG 60.736 47.826 0.00 0.00 39.02 2.82
2710 3473 2.428171 CGCCAAATCAGGTCAATCCAAT 59.572 45.455 0.00 0.00 39.02 3.16
2711 3474 1.818060 CGCCAAATCAGGTCAATCCAA 59.182 47.619 0.00 0.00 39.02 3.53
2712 3475 1.462616 CGCCAAATCAGGTCAATCCA 58.537 50.000 0.00 0.00 39.02 3.41
2713 3476 0.740737 CCGCCAAATCAGGTCAATCC 59.259 55.000 0.00 0.00 0.00 3.01
2714 3477 0.101219 GCCGCCAAATCAGGTCAATC 59.899 55.000 0.00 0.00 0.00 2.67
2715 3478 1.322538 GGCCGCCAAATCAGGTCAAT 61.323 55.000 3.91 0.00 0.00 2.57
2716 3479 1.976474 GGCCGCCAAATCAGGTCAA 60.976 57.895 3.91 0.00 0.00 3.18
2717 3480 2.361104 GGCCGCCAAATCAGGTCA 60.361 61.111 3.91 0.00 0.00 4.02
2718 3481 2.361104 TGGCCGCCAAATCAGGTC 60.361 61.111 10.50 0.00 0.00 3.85
2719 3482 2.361610 CTGGCCGCCAAATCAGGT 60.362 61.111 14.45 0.00 30.80 4.00
2720 3483 2.916527 ATCCTGGCCGCCAAATCAGG 62.917 60.000 14.45 10.89 45.92 3.86
2721 3484 1.039233 AATCCTGGCCGCCAAATCAG 61.039 55.000 14.45 0.66 30.80 2.90
2722 3485 0.614415 AAATCCTGGCCGCCAAATCA 60.614 50.000 14.45 0.00 30.80 2.57
2723 3486 0.179103 CAAATCCTGGCCGCCAAATC 60.179 55.000 14.45 0.00 30.80 2.17
2724 3487 0.904394 ACAAATCCTGGCCGCCAAAT 60.904 50.000 14.45 7.33 30.80 2.32
2725 3488 1.118356 AACAAATCCTGGCCGCCAAA 61.118 50.000 14.45 5.02 30.80 3.28
2726 3489 1.532794 AACAAATCCTGGCCGCCAA 60.533 52.632 14.45 0.00 30.80 4.52
2727 3490 2.117206 AACAAATCCTGGCCGCCA 59.883 55.556 12.67 12.67 0.00 5.69
2728 3491 2.573340 CAACAAATCCTGGCCGCC 59.427 61.111 1.04 1.04 0.00 6.13
2729 3492 1.322538 ATCCAACAAATCCTGGCCGC 61.323 55.000 0.00 0.00 32.33 6.53
2730 3493 0.740737 GATCCAACAAATCCTGGCCG 59.259 55.000 0.00 0.00 32.33 6.13
2731 3494 1.753073 CAGATCCAACAAATCCTGGCC 59.247 52.381 0.00 0.00 32.33 5.36
2732 3495 1.135721 GCAGATCCAACAAATCCTGGC 59.864 52.381 0.00 0.00 32.33 4.85
2733 3496 1.753073 GGCAGATCCAACAAATCCTGG 59.247 52.381 0.00 0.00 34.01 4.45
2734 3497 1.753073 GGGCAGATCCAACAAATCCTG 59.247 52.381 0.00 0.00 36.21 3.86
2735 3498 1.342374 GGGGCAGATCCAACAAATCCT 60.342 52.381 0.00 0.00 36.21 3.24
2736 3499 1.114627 GGGGCAGATCCAACAAATCC 58.885 55.000 0.00 0.00 36.21 3.01
2737 3500 2.149973 AGGGGCAGATCCAACAAATC 57.850 50.000 0.00 0.00 36.21 2.17
2738 3501 2.568509 CAAAGGGGCAGATCCAACAAAT 59.431 45.455 0.00 0.00 36.21 2.32
2739 3502 1.969923 CAAAGGGGCAGATCCAACAAA 59.030 47.619 0.00 0.00 36.21 2.83
2740 3503 1.631405 CAAAGGGGCAGATCCAACAA 58.369 50.000 0.00 0.00 36.21 2.83
2741 3504 0.251742 CCAAAGGGGCAGATCCAACA 60.252 55.000 0.00 0.00 36.21 3.33
2742 3505 2.583472 CCAAAGGGGCAGATCCAAC 58.417 57.895 0.00 0.00 36.21 3.77
2790 3553 9.396022 TCTTGTTAGAATCAAAACTGACTCTTT 57.604 29.630 0.00 0.00 0.00 2.52
2791 3554 8.964476 TCTTGTTAGAATCAAAACTGACTCTT 57.036 30.769 0.00 0.00 0.00 2.85
2792 3555 9.566432 AATCTTGTTAGAATCAAAACTGACTCT 57.434 29.630 0.00 0.00 33.20 3.24
2793 3556 9.818796 GAATCTTGTTAGAATCAAAACTGACTC 57.181 33.333 0.00 0.00 31.76 3.36
2794 3557 9.342308 TGAATCTTGTTAGAATCAAAACTGACT 57.658 29.630 0.00 0.00 37.37 3.41
2844 3607 2.564062 AGGACCAACAGCAATCAATTGG 59.436 45.455 5.42 0.33 45.91 3.16
2846 3609 3.771216 AGAGGACCAACAGCAATCAATT 58.229 40.909 0.00 0.00 0.00 2.32
2989 3761 2.821969 GTGGCATCAGAGGTCATTTGTT 59.178 45.455 0.00 0.00 0.00 2.83
3035 3807 6.660521 ACCATATGTCAACACAGAATCAACAT 59.339 34.615 1.24 0.00 35.41 2.71
3211 7000 5.819991 AGGCAAAAGACCATTGAGATCTAA 58.180 37.500 0.00 0.00 0.00 2.10
3248 7037 7.056635 ACATTTCCCTATTTCTGATGTAGTGG 58.943 38.462 0.00 0.00 0.00 4.00
3256 7045 7.285401 GGCTGATAAACATTTCCCTATTTCTGA 59.715 37.037 0.00 0.00 0.00 3.27
3277 7066 3.931907 ATATTTGCTACAGGTGGCTGA 57.068 42.857 9.20 0.00 37.97 4.26
3278 7067 3.696051 ACAATATTTGCTACAGGTGGCTG 59.304 43.478 9.20 0.81 37.97 4.85
3293 7104 3.407698 TCACACGGTTGCTCACAATATT 58.592 40.909 0.00 0.00 38.27 1.28
3296 7107 1.333619 GTTCACACGGTTGCTCACAAT 59.666 47.619 0.00 0.00 38.27 2.71
3308 7119 3.005050 TGGTACCTCTACAAGTTCACACG 59.995 47.826 14.36 0.00 0.00 4.49
3383 7194 5.011329 CCAAATCCCATGAACCATCATAAGG 59.989 44.000 0.00 0.00 44.53 2.69
3400 7211 4.583073 AGTTACACCTGTTCAACCAAATCC 59.417 41.667 0.00 0.00 0.00 3.01
3452 7263 4.475944 GAATGACACATTGGCACTGTAAC 58.524 43.478 10.34 8.11 38.83 2.50
3561 7455 3.775316 AGGGGTCTTCGAACTGATTATGT 59.225 43.478 0.00 0.00 0.00 2.29
3564 7458 2.093658 GCAGGGGTCTTCGAACTGATTA 60.094 50.000 14.82 0.00 0.00 1.75
3605 7513 8.856490 ACAATATTTCACAGAACTGACAAAAC 57.144 30.769 8.87 0.00 0.00 2.43
3652 7560 7.256399 TCATGGGATCCCTAACTTCAGTATAT 58.744 38.462 31.05 8.90 36.94 0.86
3706 7614 8.609617 TTCGAAATGGAGGGAGTCATATATAT 57.390 34.615 0.00 0.00 0.00 0.86
3714 7622 4.402056 TGTATTCGAAATGGAGGGAGTC 57.598 45.455 0.00 0.00 0.00 3.36
3775 8435 6.322712 TGGTGTAAAGTTGCCTCAAAATAGTT 59.677 34.615 0.00 0.00 0.00 2.24
3869 8529 3.946606 ACACCACTTATTACCTTTCGGG 58.053 45.455 0.00 0.00 41.89 5.14
3902 8563 6.368791 GCAAAAGTGGGGTTAAAGATTGAATC 59.631 38.462 0.00 0.00 0.00 2.52
3907 8568 4.040339 CCAGCAAAAGTGGGGTTAAAGATT 59.960 41.667 0.00 0.00 0.00 2.40
3980 8642 4.067192 AGGGCAAAAGATCAAATGCAAAC 58.933 39.130 15.52 7.58 40.51 2.93
4062 8724 7.071698 AGAGGGCTGAATTCTAAATCTGATACA 59.928 37.037 7.05 0.00 0.00 2.29
4178 8842 4.794334 ACTACTCCTAGTCAATGTCGGAT 58.206 43.478 0.00 0.00 0.00 4.18
4181 8845 7.704271 TGAATTACTACTCCTAGTCAATGTCG 58.296 38.462 0.00 0.00 34.79 4.35
4187 8851 9.475620 TGAATTCTGAATTACTACTCCTAGTCA 57.524 33.333 15.14 2.60 34.79 3.41
4200 8864 6.603201 GGAACCATGTCCTGAATTCTGAATTA 59.397 38.462 15.14 0.00 34.56 1.40
4272 8936 1.211703 TCAACACTTGGTTCTCAGCCA 59.788 47.619 0.00 0.00 37.72 4.75
4332 8996 2.112380 TCCTGTACACATGCACCATG 57.888 50.000 3.80 3.80 46.18 3.66
4396 9060 2.510928 AGCGTCTAGACACCTAAGGT 57.489 50.000 22.37 7.77 35.62 3.50
4481 9146 5.762045 CAGTCGTGATTCAACCTCAAATTT 58.238 37.500 0.00 0.00 0.00 1.82
4482 9147 4.320494 GCAGTCGTGATTCAACCTCAAATT 60.320 41.667 0.00 0.00 0.00 1.82
4483 9148 3.189287 GCAGTCGTGATTCAACCTCAAAT 59.811 43.478 0.00 0.00 0.00 2.32
4487 9152 1.728971 CAGCAGTCGTGATTCAACCTC 59.271 52.381 0.00 0.00 0.00 3.85
4534 9199 9.865321 GCGGTATAATTTAGACTGACCATTATA 57.135 33.333 12.99 0.00 0.00 0.98
4535 9200 8.594550 AGCGGTATAATTTAGACTGACCATTAT 58.405 33.333 12.99 0.00 0.00 1.28
4557 9222 7.015226 TCAAACATAATAAATCAGTGAGCGG 57.985 36.000 0.00 0.00 0.00 5.52
4581 9255 0.850100 TGTCACCCACCCTGTCAATT 59.150 50.000 0.00 0.00 0.00 2.32
4584 9258 0.692756 TCTTGTCACCCACCCTGTCA 60.693 55.000 0.00 0.00 0.00 3.58
4816 9490 3.066203 ACACTTAACACGGCAGAAAAAGG 59.934 43.478 0.00 0.00 0.00 3.11
4832 9506 5.755409 TCCCTAGCAGATTCAAACACTTA 57.245 39.130 0.00 0.00 0.00 2.24
5007 9690 2.903798 TCAATCAGTGCGCATACATCA 58.096 42.857 15.91 0.00 0.00 3.07
5066 9749 4.141869 ACATGAATGTCTGATCACGGATCA 60.142 41.667 13.64 13.64 40.62 2.92
5084 9767 4.398988 GGTGCACCAGATTGAAATACATGA 59.601 41.667 31.23 0.00 35.64 3.07
5116 9799 4.277515 AGCATCTAACAGCAAGAGTGAA 57.722 40.909 0.00 0.00 0.00 3.18
5118 9801 6.314648 TCAATAAGCATCTAACAGCAAGAGTG 59.685 38.462 0.00 0.00 0.00 3.51
5126 9830 6.426980 TTGCAGTCAATAAGCATCTAACAG 57.573 37.500 0.00 0.00 38.19 3.16
5128 9832 8.693542 AAAATTGCAGTCAATAAGCATCTAAC 57.306 30.769 0.00 0.00 41.77 2.34
5139 9843 3.441572 CCTCCTCGAAAATTGCAGTCAAT 59.558 43.478 0.00 0.00 44.32 2.57
5150 9855 2.223711 GCAAGCAAAACCTCCTCGAAAA 60.224 45.455 0.00 0.00 0.00 2.29
5171 9876 9.421806 TCTAAAATGTTTTGCATTGATTGGTAG 57.578 29.630 1.16 0.00 46.29 3.18
5271 10014 6.576662 TTCCTATCCTCTTGCTTATCTACG 57.423 41.667 0.00 0.00 0.00 3.51
5364 10107 6.460676 CCCCGTAAGTAATACCTAACTCACAG 60.461 46.154 0.00 0.00 0.00 3.66
5368 10111 5.737349 GCACCCCGTAAGTAATACCTAACTC 60.737 48.000 0.00 0.00 0.00 3.01
5379 10122 1.832883 TTACGAGCACCCCGTAAGTA 58.167 50.000 0.00 0.00 44.40 2.24
5380 10123 2.657297 TTACGAGCACCCCGTAAGT 58.343 52.632 0.00 0.00 44.40 2.24
5383 10126 1.549620 TCAATTTACGAGCACCCCGTA 59.450 47.619 0.00 0.00 40.95 4.02
5384 10127 0.322322 TCAATTTACGAGCACCCCGT 59.678 50.000 0.00 0.00 43.26 5.28
5385 10128 1.444836 TTCAATTTACGAGCACCCCG 58.555 50.000 0.00 0.00 0.00 5.73
5386 10129 2.094906 GGTTTCAATTTACGAGCACCCC 60.095 50.000 0.00 0.00 0.00 4.95
5387 10130 2.413634 CGGTTTCAATTTACGAGCACCC 60.414 50.000 0.00 0.00 0.00 4.61
5388 10131 2.481185 TCGGTTTCAATTTACGAGCACC 59.519 45.455 0.00 0.00 0.00 5.01
5389 10132 3.799137 TCGGTTTCAATTTACGAGCAC 57.201 42.857 0.00 0.00 0.00 4.40
5391 10134 5.209977 ACTTTTCGGTTTCAATTTACGAGC 58.790 37.500 0.00 0.00 34.85 5.03
5393 10136 5.277925 GGGACTTTTCGGTTTCAATTTACGA 60.278 40.000 0.00 0.00 0.00 3.43
5394 10137 4.913345 GGGACTTTTCGGTTTCAATTTACG 59.087 41.667 0.00 0.00 0.00 3.18
5395 10138 6.080648 AGGGACTTTTCGGTTTCAATTTAC 57.919 37.500 0.00 0.00 27.25 2.01
5426 10169 2.916702 TCCGATTGTAGCAGCATCAT 57.083 45.000 0.00 0.00 0.00 2.45
5427 10170 2.554142 CTTCCGATTGTAGCAGCATCA 58.446 47.619 0.00 0.00 0.00 3.07
5428 10171 1.869767 CCTTCCGATTGTAGCAGCATC 59.130 52.381 0.00 0.00 0.00 3.91
5429 10172 1.486310 TCCTTCCGATTGTAGCAGCAT 59.514 47.619 0.00 0.00 0.00 3.79
5431 10174 1.936547 CTTCCTTCCGATTGTAGCAGC 59.063 52.381 0.00 0.00 0.00 5.25
5432 10175 2.168521 TCCTTCCTTCCGATTGTAGCAG 59.831 50.000 0.00 0.00 0.00 4.24
5433 10176 2.184533 TCCTTCCTTCCGATTGTAGCA 58.815 47.619 0.00 0.00 0.00 3.49
5434 10177 2.981859 TCCTTCCTTCCGATTGTAGC 57.018 50.000 0.00 0.00 0.00 3.58
5435 10178 4.575885 TGTTTCCTTCCTTCCGATTGTAG 58.424 43.478 0.00 0.00 0.00 2.74
5436 10179 4.627284 TGTTTCCTTCCTTCCGATTGTA 57.373 40.909 0.00 0.00 0.00 2.41
5438 10181 4.009675 TCATGTTTCCTTCCTTCCGATTG 58.990 43.478 0.00 0.00 0.00 2.67
5440 10183 4.510167 ATCATGTTTCCTTCCTTCCGAT 57.490 40.909 0.00 0.00 0.00 4.18
5443 10186 9.220767 GTACATATATCATGTTTCCTTCCTTCC 57.779 37.037 0.00 0.00 33.76 3.46
5446 10189 9.386122 AGAGTACATATATCATGTTTCCTTCCT 57.614 33.333 0.00 0.00 33.76 3.36
5450 10193 9.373450 ACTGAGAGTACATATATCATGTTTCCT 57.627 33.333 0.00 0.00 33.76 3.36
5451 10194 9.416794 CACTGAGAGTACATATATCATGTTTCC 57.583 37.037 0.00 0.00 33.76 3.13
5452 10195 9.973450 ACACTGAGAGTACATATATCATGTTTC 57.027 33.333 0.00 0.00 33.76 2.78
5453 10196 9.755804 CACACTGAGAGTACATATATCATGTTT 57.244 33.333 0.00 0.00 33.76 2.83
5454 10197 9.136323 TCACACTGAGAGTACATATATCATGTT 57.864 33.333 0.00 0.00 33.76 2.71
5455 10198 8.697507 TCACACTGAGAGTACATATATCATGT 57.302 34.615 0.00 0.00 36.13 3.21
5465 10208 7.093945 TGCAGTTATATTCACACTGAGAGTACA 60.094 37.037 5.82 0.00 40.43 2.90
5467 10210 7.404671 TGCAGTTATATTCACACTGAGAGTA 57.595 36.000 5.82 0.00 40.43 2.59
5468 10211 6.286240 TGCAGTTATATTCACACTGAGAGT 57.714 37.500 5.82 0.00 40.43 3.24
5469 10212 6.982724 TGATGCAGTTATATTCACACTGAGAG 59.017 38.462 5.82 0.00 40.43 3.20
5470 10213 6.877236 TGATGCAGTTATATTCACACTGAGA 58.123 36.000 5.82 0.00 40.43 3.27
5471 10214 7.440255 TGATGATGCAGTTATATTCACACTGAG 59.560 37.037 5.82 0.00 40.43 3.35
5472 10215 7.274447 TGATGATGCAGTTATATTCACACTGA 58.726 34.615 5.82 0.00 40.43 3.41
5473 10216 7.440255 TCTGATGATGCAGTTATATTCACACTG 59.560 37.037 0.00 0.00 40.86 3.66
5474 10217 7.440556 GTCTGATGATGCAGTTATATTCACACT 59.559 37.037 0.00 0.00 37.20 3.55
5475 10218 7.225341 TGTCTGATGATGCAGTTATATTCACAC 59.775 37.037 0.00 0.00 37.20 3.82
5476 10219 7.274447 TGTCTGATGATGCAGTTATATTCACA 58.726 34.615 0.00 0.00 37.20 3.58
5484 10227 9.013229 ACTTTTAATTGTCTGATGATGCAGTTA 57.987 29.630 0.00 0.00 37.20 2.24
5486 10229 7.362401 GGACTTTTAATTGTCTGATGATGCAGT 60.362 37.037 0.00 0.00 37.20 4.40
5488 10231 6.433716 TGGACTTTTAATTGTCTGATGATGCA 59.566 34.615 0.00 0.00 34.01 3.96
5489 10232 6.749118 GTGGACTTTTAATTGTCTGATGATGC 59.251 38.462 7.85 0.00 34.01 3.91
5490 10233 7.253422 GGTGGACTTTTAATTGTCTGATGATG 58.747 38.462 7.85 0.00 34.01 3.07
5491 10234 6.378280 GGGTGGACTTTTAATTGTCTGATGAT 59.622 38.462 7.85 0.00 34.01 2.45
5492 10235 5.710099 GGGTGGACTTTTAATTGTCTGATGA 59.290 40.000 7.85 0.00 34.01 2.92
5493 10236 5.476599 TGGGTGGACTTTTAATTGTCTGATG 59.523 40.000 7.85 0.00 34.01 3.07
5495 10238 5.055265 TGGGTGGACTTTTAATTGTCTGA 57.945 39.130 7.85 0.00 34.01 3.27
5496 10239 5.782893 TTGGGTGGACTTTTAATTGTCTG 57.217 39.130 7.85 0.00 34.01 3.51
5498 10241 5.465390 GCTTTTGGGTGGACTTTTAATTGTC 59.535 40.000 0.00 1.16 0.00 3.18
5499 10242 5.130311 AGCTTTTGGGTGGACTTTTAATTGT 59.870 36.000 0.00 0.00 0.00 2.71
5500 10243 5.610398 AGCTTTTGGGTGGACTTTTAATTG 58.390 37.500 0.00 0.00 0.00 2.32
5501 10244 5.887214 AGCTTTTGGGTGGACTTTTAATT 57.113 34.783 0.00 0.00 0.00 1.40
5502 10245 5.245301 GGTAGCTTTTGGGTGGACTTTTAAT 59.755 40.000 0.00 0.00 0.00 1.40
5503 10246 4.585581 GGTAGCTTTTGGGTGGACTTTTAA 59.414 41.667 0.00 0.00 0.00 1.52
5504 10247 4.141111 AGGTAGCTTTTGGGTGGACTTTTA 60.141 41.667 0.00 0.00 0.00 1.52
5505 10248 2.963101 GGTAGCTTTTGGGTGGACTTTT 59.037 45.455 0.00 0.00 0.00 2.27
5508 10251 1.446016 AGGTAGCTTTTGGGTGGACT 58.554 50.000 0.00 0.00 0.00 3.85
5509 10252 2.287977 AAGGTAGCTTTTGGGTGGAC 57.712 50.000 0.12 0.00 0.00 4.02
5510 10253 2.490168 GGAAAGGTAGCTTTTGGGTGGA 60.490 50.000 20.20 0.00 0.00 4.02
5512 10255 2.876581 AGGAAAGGTAGCTTTTGGGTG 58.123 47.619 20.20 0.00 0.00 4.61
5513 10256 3.612795 AAGGAAAGGTAGCTTTTGGGT 57.387 42.857 20.20 4.97 0.00 4.51
5514 10257 4.955811 AAAAGGAAAGGTAGCTTTTGGG 57.044 40.909 20.20 0.00 0.00 4.12
5515 10258 6.161855 AGAAAAAGGAAAGGTAGCTTTTGG 57.838 37.500 20.20 0.00 0.00 3.28
5516 10259 8.492673 AAAAGAAAAAGGAAAGGTAGCTTTTG 57.507 30.769 20.20 0.00 33.38 2.44
5517 10260 7.769044 GGAAAAGAAAAAGGAAAGGTAGCTTTT 59.231 33.333 20.20 4.16 36.21 2.27
5518 10261 7.125811 AGGAAAAGAAAAAGGAAAGGTAGCTTT 59.874 33.333 19.41 19.41 0.00 3.51
5519 10262 6.611642 AGGAAAAGAAAAAGGAAAGGTAGCTT 59.388 34.615 0.12 0.12 0.00 3.74
5522 10265 6.323996 ACCAGGAAAAGAAAAAGGAAAGGTAG 59.676 38.462 0.00 0.00 0.00 3.18
5524 10267 5.030147 ACCAGGAAAAGAAAAAGGAAAGGT 58.970 37.500 0.00 0.00 0.00 3.50
5525 10268 5.614324 ACCAGGAAAAGAAAAAGGAAAGG 57.386 39.130 0.00 0.00 0.00 3.11
5526 10269 6.239317 CCCTACCAGGAAAAGAAAAAGGAAAG 60.239 42.308 0.00 0.00 37.67 2.62
5527 10270 5.600898 CCCTACCAGGAAAAGAAAAAGGAAA 59.399 40.000 0.00 0.00 37.67 3.13
5528 10271 5.103430 TCCCTACCAGGAAAAGAAAAAGGAA 60.103 40.000 0.00 0.00 37.67 3.36
5529 10272 4.417518 TCCCTACCAGGAAAAGAAAAAGGA 59.582 41.667 0.00 0.00 37.67 3.36
5530 10273 4.736473 TCCCTACCAGGAAAAGAAAAAGG 58.264 43.478 0.00 0.00 37.67 3.11
5540 10283 3.053917 GGTTAGCATTTCCCTACCAGGAA 60.054 47.826 0.00 0.00 44.30 3.36
5543 10286 3.199946 TCTGGTTAGCATTTCCCTACCAG 59.800 47.826 11.79 11.79 43.35 4.00
5544 10287 3.186283 TCTGGTTAGCATTTCCCTACCA 58.814 45.455 0.00 0.00 0.00 3.25
5545 10288 3.926058 TCTGGTTAGCATTTCCCTACC 57.074 47.619 0.00 0.00 0.00 3.18
5546 10289 4.585879 TGTTCTGGTTAGCATTTCCCTAC 58.414 43.478 0.00 0.00 0.00 3.18
5547 10290 4.919774 TGTTCTGGTTAGCATTTCCCTA 57.080 40.909 0.00 0.00 0.00 3.53
5548 10291 3.806949 TGTTCTGGTTAGCATTTCCCT 57.193 42.857 0.00 0.00 0.00 4.20
5549 10292 3.826729 AGTTGTTCTGGTTAGCATTTCCC 59.173 43.478 0.00 0.00 0.00 3.97
5550 10293 5.453567 AAGTTGTTCTGGTTAGCATTTCC 57.546 39.130 0.00 0.00 0.00 3.13
5551 10294 6.756542 ACAAAAGTTGTTCTGGTTAGCATTTC 59.243 34.615 0.00 0.00 42.22 2.17
5552 10295 6.639563 ACAAAAGTTGTTCTGGTTAGCATTT 58.360 32.000 0.00 0.00 42.22 2.32
5553 10296 6.220726 ACAAAAGTTGTTCTGGTTAGCATT 57.779 33.333 0.00 0.00 42.22 3.56
5554 10297 5.852282 ACAAAAGTTGTTCTGGTTAGCAT 57.148 34.783 0.00 0.00 42.22 3.79
5555 10298 6.952773 ATACAAAAGTTGTTCTGGTTAGCA 57.047 33.333 0.00 0.00 42.22 3.49
5556 10299 9.738832 TTTAATACAAAAGTTGTTCTGGTTAGC 57.261 29.630 0.00 0.00 42.22 3.09
5601 10344 7.346751 ACTGCTCCAATTTCAAGAACTTTTA 57.653 32.000 0.00 0.00 0.00 1.52
5602 10345 6.225981 ACTGCTCCAATTTCAAGAACTTTT 57.774 33.333 0.00 0.00 0.00 2.27
5606 10349 8.443953 AGATATACTGCTCCAATTTCAAGAAC 57.556 34.615 0.00 0.00 0.00 3.01
5610 10353 7.795047 TCAGAGATATACTGCTCCAATTTCAA 58.205 34.615 4.97 0.00 35.61 2.69
5615 10358 6.782000 AGAGTTCAGAGATATACTGCTCCAAT 59.218 38.462 4.97 0.00 35.61 3.16
5616 10359 6.040278 CAGAGTTCAGAGATATACTGCTCCAA 59.960 42.308 4.97 0.00 35.61 3.53
5617 10360 5.534278 CAGAGTTCAGAGATATACTGCTCCA 59.466 44.000 4.97 0.00 35.61 3.86
5619 10362 6.875948 TCAGAGTTCAGAGATATACTGCTC 57.124 41.667 4.97 6.68 35.61 4.26
5621 10364 9.973450 TTTAATCAGAGTTCAGAGATATACTGC 57.027 33.333 4.97 0.00 35.61 4.40
5626 10369 9.703892 CCGAATTTAATCAGAGTTCAGAGATAT 57.296 33.333 0.00 0.00 0.00 1.63
5627 10370 8.696374 ACCGAATTTAATCAGAGTTCAGAGATA 58.304 33.333 0.00 0.00 0.00 1.98
5628 10371 7.560368 ACCGAATTTAATCAGAGTTCAGAGAT 58.440 34.615 0.00 0.00 0.00 2.75
5629 10372 6.936279 ACCGAATTTAATCAGAGTTCAGAGA 58.064 36.000 0.00 0.00 0.00 3.10
5630 10373 7.118390 ACAACCGAATTTAATCAGAGTTCAGAG 59.882 37.037 0.00 0.00 0.00 3.35
5644 10387 6.579292 CGTAATTGCAGAAACAACCGAATTTA 59.421 34.615 0.00 0.00 31.03 1.40
5645 10388 5.401079 CGTAATTGCAGAAACAACCGAATTT 59.599 36.000 0.00 0.00 31.03 1.82
5653 10432 4.098044 TCCCAAACGTAATTGCAGAAACAA 59.902 37.500 0.00 0.00 0.00 2.83
5721 10505 4.927267 ATTTGAGTACTCCACCATTCCA 57.073 40.909 20.11 0.00 0.00 3.53
5722 10506 5.476945 ACAAATTTGAGTACTCCACCATTCC 59.523 40.000 24.64 0.00 0.00 3.01
5724 10508 6.433093 GGTACAAATTTGAGTACTCCACCATT 59.567 38.462 24.64 9.66 40.26 3.16
5726 10510 5.163184 TGGTACAAATTTGAGTACTCCACCA 60.163 40.000 24.64 17.40 40.26 4.17
5727 10511 5.180680 GTGGTACAAATTTGAGTACTCCACC 59.819 44.000 24.64 15.52 44.16 4.61
5741 10533 0.952010 GTCGCCGGTGTGGTACAAAT 60.952 55.000 16.01 0.00 44.16 2.32
5774 10566 3.247648 AGCACCAGGAGCAGCAGT 61.248 61.111 11.90 0.00 0.00 4.40
5782 10574 1.544825 GCTACCACAGAGCACCAGGA 61.545 60.000 0.00 0.00 39.84 3.86
5783 10575 1.078848 GCTACCACAGAGCACCAGG 60.079 63.158 0.00 0.00 39.84 4.45
5826 10650 9.154847 CAAGTCTGTAACTGATCAATTGATACA 57.845 33.333 20.75 18.17 38.58 2.29
5889 10731 6.807230 GTGATAAATAAGGTGATCGCGAGTAT 59.193 38.462 16.66 0.00 0.00 2.12
5890 10732 6.147581 GTGATAAATAAGGTGATCGCGAGTA 58.852 40.000 16.66 2.40 0.00 2.59
5891 10733 4.982916 GTGATAAATAAGGTGATCGCGAGT 59.017 41.667 16.66 2.41 0.00 4.18
5892 10734 5.502214 GTGATAAATAAGGTGATCGCGAG 57.498 43.478 16.66 0.00 0.00 5.03
5894 10736 4.293729 CGTGATAAATAAGGTGATCGCG 57.706 45.455 0.00 0.00 43.34 5.87
5895 10737 5.900339 TTCGTGATAAATAAGGTGATCGC 57.100 39.130 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.