Multiple sequence alignment - TraesCS1A01G347400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G347400 chr1A 100.000 3410 0 0 1 3410 533322409 533325818 0.000000e+00 6298.0
1 TraesCS1A01G347400 chr1A 81.241 1434 207 29 1001 2400 533409286 533410691 0.000000e+00 1101.0
2 TraesCS1A01G347400 chr1A 94.574 129 5 1 3214 3340 533325459 533325587 7.460000e-47 198.0
3 TraesCS1A01G347400 chr1A 94.574 129 5 1 3051 3179 533325622 533325748 7.460000e-47 198.0
4 TraesCS1A01G347400 chr1B 93.726 2343 115 17 850 3175 589976431 589978758 0.000000e+00 3483.0
5 TraesCS1A01G347400 chr1B 82.718 1435 205 24 1001 2400 590091037 590092463 0.000000e+00 1236.0
6 TraesCS1A01G347400 chr1B 80.342 585 92 10 124 689 145817397 145817977 4.070000e-114 422.0
7 TraesCS1A01G347400 chr1B 80.342 585 92 10 124 689 145837363 145837943 4.070000e-114 422.0
8 TraesCS1A01G347400 chr1B 92.746 193 12 1 3214 3404 589978634 589978826 9.320000e-71 278.0
9 TraesCS1A01G347400 chr1D 94.438 1780 68 15 850 2610 436112675 436114442 0.000000e+00 2710.0
10 TraesCS1A01G347400 chr1D 80.378 1218 193 27 1211 2400 436120140 436121339 0.000000e+00 883.0
11 TraesCS1A01G347400 chr1D 93.928 527 28 3 2809 3331 436114642 436115168 0.000000e+00 793.0
12 TraesCS1A01G347400 chr1D 95.000 120 4 1 3051 3170 436115051 436115168 1.620000e-43 187.0
13 TraesCS1A01G347400 chr1D 92.126 127 8 1 3214 3338 436114888 436115014 9.720000e-41 178.0
14 TraesCS1A01G347400 chr1D 88.060 67 8 0 2062 2128 42614145 42614079 2.820000e-11 80.5
15 TraesCS1A01G347400 chr6D 80.315 1397 241 20 1019 2386 417775873 417777264 0.000000e+00 1026.0
16 TraesCS1A01G347400 chr6D 80.373 912 158 12 1019 1918 417752057 417751155 0.000000e+00 673.0
17 TraesCS1A01G347400 chr6D 79.104 134 25 3 3019 3151 14651264 14651133 4.690000e-14 89.8
18 TraesCS1A01G347400 chr6D 80.374 107 12 6 3251 3354 14651195 14651095 4.720000e-09 73.1
19 TraesCS1A01G347400 chr7B 78.110 1439 257 36 998 2399 59078727 59080144 0.000000e+00 859.0
20 TraesCS1A01G347400 chr7B 78.920 574 103 17 124 685 698927229 698927796 1.160000e-99 374.0
21 TraesCS1A01G347400 chr3D 78.154 1419 262 21 999 2381 17698280 17699686 0.000000e+00 859.0
22 TraesCS1A01G347400 chr3D 80.271 958 169 13 1000 1941 17343131 17342178 0.000000e+00 704.0
23 TraesCS1A01G347400 chr3D 83.407 452 69 4 1933 2381 17342156 17341708 6.810000e-112 414.0
24 TraesCS1A01G347400 chr7D 80.000 1000 169 20 1429 2399 101780849 101779852 0.000000e+00 710.0
25 TraesCS1A01G347400 chr7D 75.369 203 46 4 1939 2139 48356827 48357027 1.010000e-15 95.3
26 TraesCS1A01G347400 chr7D 90.909 66 6 0 2054 2119 454379353 454379418 4.690000e-14 89.8
27 TraesCS1A01G347400 chr7D 97.500 40 0 1 119 158 83748667 83748705 2.200000e-07 67.6
28 TraesCS1A01G347400 chr6A 79.430 948 174 12 1006 1941 560192871 560191933 0.000000e+00 651.0
29 TraesCS1A01G347400 chr4B 87.879 561 58 7 124 675 564694497 564695056 0.000000e+00 651.0
30 TraesCS1A01G347400 chr4B 88.406 69 8 0 2048 2116 656892734 656892802 2.180000e-12 84.2
31 TraesCS1A01G347400 chr6B 86.911 573 64 8 124 688 671265900 671265331 1.730000e-177 632.0
32 TraesCS1A01G347400 chr5B 87.166 561 61 8 124 675 137810407 137809849 8.030000e-176 627.0
33 TraesCS1A01G347400 chr5B 86.038 573 66 11 124 688 241520434 241519868 1.350000e-168 603.0
34 TraesCS1A01G347400 chr5B 73.626 455 96 18 1479 1915 65525885 65525437 1.640000e-33 154.0
35 TraesCS1A01G347400 chr2B 85.765 562 69 9 124 676 162268834 162268275 4.900000e-163 584.0
36 TraesCS1A01G347400 chr2B 89.640 222 20 1 154 372 62003080 62003301 2.590000e-71 279.0
37 TraesCS1A01G347400 chr2B 95.349 43 1 1 116 158 782614877 782614918 2.200000e-07 67.6
38 TraesCS1A01G347400 chr3B 84.633 449 69 0 1933 2381 24901736 24901288 6.710000e-122 448.0
39 TraesCS1A01G347400 chr4A 80.439 547 83 20 118 648 426781569 426781031 2.470000e-106 396.0
40 TraesCS1A01G347400 chr5D 79.348 276 48 7 2000 2269 65009950 65010222 5.810000e-43 185.0
41 TraesCS1A01G347400 chr4D 88.571 70 8 0 2047 2116 509837998 509837929 6.060000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G347400 chr1A 533322409 533325818 3409 False 2231.333333 6298 96.382667 1 3410 3 chr1A.!!$F2 3409
1 TraesCS1A01G347400 chr1A 533409286 533410691 1405 False 1101.000000 1101 81.241000 1001 2400 1 chr1A.!!$F1 1399
2 TraesCS1A01G347400 chr1B 589976431 589978826 2395 False 1880.500000 3483 93.236000 850 3404 2 chr1B.!!$F4 2554
3 TraesCS1A01G347400 chr1B 590091037 590092463 1426 False 1236.000000 1236 82.718000 1001 2400 1 chr1B.!!$F3 1399
4 TraesCS1A01G347400 chr1B 145817397 145817977 580 False 422.000000 422 80.342000 124 689 1 chr1B.!!$F1 565
5 TraesCS1A01G347400 chr1B 145837363 145837943 580 False 422.000000 422 80.342000 124 689 1 chr1B.!!$F2 565
6 TraesCS1A01G347400 chr1D 436112675 436115168 2493 False 967.000000 2710 93.873000 850 3338 4 chr1D.!!$F2 2488
7 TraesCS1A01G347400 chr1D 436120140 436121339 1199 False 883.000000 883 80.378000 1211 2400 1 chr1D.!!$F1 1189
8 TraesCS1A01G347400 chr6D 417775873 417777264 1391 False 1026.000000 1026 80.315000 1019 2386 1 chr6D.!!$F1 1367
9 TraesCS1A01G347400 chr6D 417751155 417752057 902 True 673.000000 673 80.373000 1019 1918 1 chr6D.!!$R1 899
10 TraesCS1A01G347400 chr7B 59078727 59080144 1417 False 859.000000 859 78.110000 998 2399 1 chr7B.!!$F1 1401
11 TraesCS1A01G347400 chr7B 698927229 698927796 567 False 374.000000 374 78.920000 124 685 1 chr7B.!!$F2 561
12 TraesCS1A01G347400 chr3D 17698280 17699686 1406 False 859.000000 859 78.154000 999 2381 1 chr3D.!!$F1 1382
13 TraesCS1A01G347400 chr3D 17341708 17343131 1423 True 559.000000 704 81.839000 1000 2381 2 chr3D.!!$R1 1381
14 TraesCS1A01G347400 chr7D 101779852 101780849 997 True 710.000000 710 80.000000 1429 2399 1 chr7D.!!$R1 970
15 TraesCS1A01G347400 chr6A 560191933 560192871 938 True 651.000000 651 79.430000 1006 1941 1 chr6A.!!$R1 935
16 TraesCS1A01G347400 chr4B 564694497 564695056 559 False 651.000000 651 87.879000 124 675 1 chr4B.!!$F1 551
17 TraesCS1A01G347400 chr6B 671265331 671265900 569 True 632.000000 632 86.911000 124 688 1 chr6B.!!$R1 564
18 TraesCS1A01G347400 chr5B 137809849 137810407 558 True 627.000000 627 87.166000 124 675 1 chr5B.!!$R2 551
19 TraesCS1A01G347400 chr5B 241519868 241520434 566 True 603.000000 603 86.038000 124 688 1 chr5B.!!$R3 564
20 TraesCS1A01G347400 chr2B 162268275 162268834 559 True 584.000000 584 85.765000 124 676 1 chr2B.!!$R1 552
21 TraesCS1A01G347400 chr4A 426781031 426781569 538 True 396.000000 396 80.439000 118 648 1 chr4A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.034337 TGACCGGTGTTTGACTAGCC 59.966 55.0 14.63 0.0 0.00 3.93 F
1645 1743 0.031585 CCTGGTGAACACGTTCGAGA 59.968 55.0 5.51 0.0 42.28 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2045 0.032952 CCTGGTCGTCGTTGAAAGGA 59.967 55.0 0.0 0.0 0.00 3.36 R
3331 3629 0.035152 TGCCATGCTGTTGTAGGGAG 60.035 55.0 0.0 0.0 31.35 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.943002 AGTTATGTTTAAGTAGATTTTGACCGG 58.057 33.333 0.00 0.00 0.00 5.28
54 55 8.724229 GTTATGTTTAAGTAGATTTTGACCGGT 58.276 33.333 6.92 6.92 0.00 5.28
55 56 6.548441 TGTTTAAGTAGATTTTGACCGGTG 57.452 37.500 14.63 0.00 0.00 4.94
56 57 6.056884 TGTTTAAGTAGATTTTGACCGGTGT 58.943 36.000 14.63 0.00 0.00 4.16
57 58 6.543100 TGTTTAAGTAGATTTTGACCGGTGTT 59.457 34.615 14.63 0.00 0.00 3.32
58 59 7.067251 TGTTTAAGTAGATTTTGACCGGTGTTT 59.933 33.333 14.63 0.00 0.00 2.83
59 60 5.432885 AAGTAGATTTTGACCGGTGTTTG 57.567 39.130 14.63 0.00 0.00 2.93
60 61 4.710324 AGTAGATTTTGACCGGTGTTTGA 58.290 39.130 14.63 0.00 0.00 2.69
61 62 3.982576 AGATTTTGACCGGTGTTTGAC 57.017 42.857 14.63 0.00 0.00 3.18
62 63 3.551846 AGATTTTGACCGGTGTTTGACT 58.448 40.909 14.63 1.44 0.00 3.41
63 64 4.710324 AGATTTTGACCGGTGTTTGACTA 58.290 39.130 14.63 0.00 0.00 2.59
64 65 4.755123 AGATTTTGACCGGTGTTTGACTAG 59.245 41.667 14.63 0.00 0.00 2.57
65 66 1.873698 TTGACCGGTGTTTGACTAGC 58.126 50.000 14.63 0.00 0.00 3.42
66 67 0.034337 TGACCGGTGTTTGACTAGCC 59.966 55.000 14.63 0.00 0.00 3.93
67 68 0.034337 GACCGGTGTTTGACTAGCCA 59.966 55.000 14.63 0.00 0.00 4.75
68 69 0.690762 ACCGGTGTTTGACTAGCCAT 59.309 50.000 6.12 0.00 0.00 4.40
69 70 1.073284 ACCGGTGTTTGACTAGCCATT 59.927 47.619 6.12 0.00 0.00 3.16
70 71 2.159382 CCGGTGTTTGACTAGCCATTT 58.841 47.619 0.00 0.00 0.00 2.32
71 72 3.244630 ACCGGTGTTTGACTAGCCATTTA 60.245 43.478 6.12 0.00 0.00 1.40
72 73 3.945285 CCGGTGTTTGACTAGCCATTTAT 59.055 43.478 0.00 0.00 0.00 1.40
73 74 4.201910 CCGGTGTTTGACTAGCCATTTATG 60.202 45.833 0.00 0.00 0.00 1.90
74 75 4.394920 CGGTGTTTGACTAGCCATTTATGT 59.605 41.667 0.00 0.00 0.00 2.29
75 76 5.583061 CGGTGTTTGACTAGCCATTTATGTA 59.417 40.000 0.00 0.00 0.00 2.29
76 77 6.456449 CGGTGTTTGACTAGCCATTTATGTAC 60.456 42.308 0.00 0.00 0.00 2.90
77 78 6.373216 GGTGTTTGACTAGCCATTTATGTACA 59.627 38.462 0.00 0.00 0.00 2.90
78 79 7.094549 GGTGTTTGACTAGCCATTTATGTACAA 60.095 37.037 0.00 0.00 0.00 2.41
79 80 8.458843 GTGTTTGACTAGCCATTTATGTACAAT 58.541 33.333 0.00 0.00 0.00 2.71
80 81 9.019656 TGTTTGACTAGCCATTTATGTACAATT 57.980 29.630 0.00 0.00 0.00 2.32
84 85 8.783093 TGACTAGCCATTTATGTACAATTATGC 58.217 33.333 0.00 0.00 0.00 3.14
85 86 8.924511 ACTAGCCATTTATGTACAATTATGCT 57.075 30.769 0.00 6.99 0.00 3.79
86 87 9.354673 ACTAGCCATTTATGTACAATTATGCTT 57.645 29.630 0.00 0.00 0.00 3.91
87 88 9.616634 CTAGCCATTTATGTACAATTATGCTTG 57.383 33.333 0.00 2.08 0.00 4.01
88 89 8.236585 AGCCATTTATGTACAATTATGCTTGA 57.763 30.769 0.00 0.00 0.00 3.02
89 90 8.863086 AGCCATTTATGTACAATTATGCTTGAT 58.137 29.630 0.00 0.00 0.00 2.57
90 91 9.480053 GCCATTTATGTACAATTATGCTTGATT 57.520 29.630 0.00 0.00 0.00 2.57
98 99 9.448438 TGTACAATTATGCTTGATTAAGTCTGT 57.552 29.630 0.00 0.00 36.27 3.41
101 102 9.846248 ACAATTATGCTTGATTAAGTCTGTTTC 57.154 29.630 0.00 0.00 36.27 2.78
102 103 9.844790 CAATTATGCTTGATTAAGTCTGTTTCA 57.155 29.630 0.00 0.00 36.27 2.69
104 105 8.846943 TTATGCTTGATTAAGTCTGTTTCAGA 57.153 30.769 0.00 0.00 34.87 3.27
112 113 3.562639 TCTGTTTCAGACACGTCGG 57.437 52.632 0.00 0.00 35.39 4.79
113 114 0.596600 TCTGTTTCAGACACGTCGGC 60.597 55.000 0.00 0.00 35.39 5.54
114 115 0.874175 CTGTTTCAGACACGTCGGCA 60.874 55.000 0.00 0.00 33.82 5.69
115 116 0.460459 TGTTTCAGACACGTCGGCAA 60.460 50.000 0.00 0.00 32.00 4.52
116 117 0.653636 GTTTCAGACACGTCGGCAAA 59.346 50.000 0.00 0.00 34.09 3.68
117 118 1.062880 GTTTCAGACACGTCGGCAAAA 59.937 47.619 0.00 0.00 34.09 2.44
118 119 1.370609 TTCAGACACGTCGGCAAAAA 58.629 45.000 0.00 0.00 34.09 1.94
119 120 1.588674 TCAGACACGTCGGCAAAAAT 58.411 45.000 0.00 0.00 34.09 1.82
120 121 2.756829 TCAGACACGTCGGCAAAAATA 58.243 42.857 0.00 0.00 34.09 1.40
127 128 4.512571 ACACGTCGGCAAAAATAAGTACTT 59.487 37.500 13.68 13.68 0.00 2.24
163 164 2.890808 TAAGTCATCTTAGGCTGGCG 57.109 50.000 0.00 0.00 35.36 5.69
170 171 2.067365 TCTTAGGCTGGCGATAGTGA 57.933 50.000 0.00 0.00 39.35 3.41
172 173 1.683917 CTTAGGCTGGCGATAGTGAGT 59.316 52.381 0.00 0.00 39.35 3.41
205 206 6.432581 AGTAGTATCATGTACTTGGGACTCA 58.567 40.000 15.15 5.27 0.00 3.41
222 223 5.237815 GGACTCACAAACATACTGATGTGA 58.762 41.667 14.75 14.75 45.93 3.58
233 234 6.359804 ACATACTGATGTGACAGGCAATTAT 58.640 36.000 0.00 0.00 44.90 1.28
323 328 2.358582 TGCATGGCAATAAATGAGACCG 59.641 45.455 0.00 0.00 34.76 4.79
339 344 6.723131 TGAGACCGTCTATGATACTAATCG 57.277 41.667 0.00 0.00 34.60 3.34
361 366 9.620259 AATCGATGATACTATGCACTATAGAGA 57.380 33.333 6.78 0.00 41.10 3.10
403 408 9.507280 GTAACATATGCACGTTACTAGTCTAAA 57.493 33.333 20.38 0.00 42.62 1.85
465 472 0.340208 AGGAGGAGGGGAAACGAGAT 59.660 55.000 0.00 0.00 0.00 2.75
547 559 6.128902 CGTGTTTGGTAGTCTCAAGTCATTAC 60.129 42.308 0.00 0.00 0.00 1.89
550 562 7.771361 TGTTTGGTAGTCTCAAGTCATTACAAA 59.229 33.333 0.00 0.00 0.00 2.83
552 564 7.062749 TGGTAGTCTCAAGTCATTACAAACT 57.937 36.000 0.00 0.00 0.00 2.66
559 571 4.597079 CAAGTCATTACAAACTTGCACGT 58.403 39.130 2.66 0.00 44.03 4.49
576 588 2.609459 CACGTCCCACATCTCTTATTGC 59.391 50.000 0.00 0.00 0.00 3.56
624 646 1.877443 GTGGAAGTTAATGCACCACGT 59.123 47.619 4.82 0.00 40.82 4.49
646 668 9.188588 CACGTCTAAGTGTTTTGAGACTATTTA 57.811 33.333 0.00 0.00 36.90 1.40
689 711 5.103000 CACAACTAGAACGAAGGGAGTATG 58.897 45.833 0.00 0.00 0.00 2.39
690 712 4.771054 ACAACTAGAACGAAGGGAGTATGT 59.229 41.667 0.00 0.00 0.00 2.29
691 713 5.105837 ACAACTAGAACGAAGGGAGTATGTC 60.106 44.000 0.00 0.00 0.00 3.06
692 714 4.857679 ACTAGAACGAAGGGAGTATGTCT 58.142 43.478 0.00 0.00 0.00 3.41
693 715 5.262804 ACTAGAACGAAGGGAGTATGTCTT 58.737 41.667 0.00 0.00 0.00 3.01
694 716 4.722361 AGAACGAAGGGAGTATGTCTTC 57.278 45.455 0.00 0.00 35.02 2.87
695 717 3.447944 AGAACGAAGGGAGTATGTCTTCC 59.552 47.826 0.00 0.00 42.15 3.46
696 718 1.749634 ACGAAGGGAGTATGTCTTCCG 59.250 52.381 0.00 0.00 46.34 4.30
697 719 1.536284 CGAAGGGAGTATGTCTTCCGC 60.536 57.143 0.00 0.00 46.34 5.54
698 720 0.831307 AAGGGAGTATGTCTTCCGCC 59.169 55.000 0.00 0.00 46.34 6.13
699 721 1.049289 AGGGAGTATGTCTTCCGCCC 61.049 60.000 0.00 0.00 46.34 6.13
700 722 1.049289 GGGAGTATGTCTTCCGCCCT 61.049 60.000 0.00 0.00 31.29 5.19
701 723 0.831307 GGAGTATGTCTTCCGCCCTT 59.169 55.000 0.00 0.00 0.00 3.95
702 724 1.209747 GGAGTATGTCTTCCGCCCTTT 59.790 52.381 0.00 0.00 0.00 3.11
703 725 2.552031 GAGTATGTCTTCCGCCCTTTC 58.448 52.381 0.00 0.00 0.00 2.62
704 726 1.134788 AGTATGTCTTCCGCCCTTTCG 60.135 52.381 0.00 0.00 0.00 3.46
705 727 0.899720 TATGTCTTCCGCCCTTTCGT 59.100 50.000 0.00 0.00 0.00 3.85
706 728 0.036306 ATGTCTTCCGCCCTTTCGTT 59.964 50.000 0.00 0.00 0.00 3.85
707 729 0.882927 TGTCTTCCGCCCTTTCGTTG 60.883 55.000 0.00 0.00 0.00 4.10
708 730 1.302192 TCTTCCGCCCTTTCGTTGG 60.302 57.895 0.00 0.00 0.00 3.77
709 731 1.302192 CTTCCGCCCTTTCGTTGGA 60.302 57.895 0.00 0.00 0.00 3.53
710 732 1.574702 CTTCCGCCCTTTCGTTGGAC 61.575 60.000 0.00 0.00 0.00 4.02
711 733 3.419759 CCGCCCTTTCGTTGGACG 61.420 66.667 0.00 0.00 44.19 4.79
712 734 4.084888 CGCCCTTTCGTTGGACGC 62.085 66.667 0.00 0.00 42.21 5.19
713 735 2.975799 GCCCTTTCGTTGGACGCA 60.976 61.111 0.00 0.00 42.21 5.24
714 736 2.943653 CCCTTTCGTTGGACGCAC 59.056 61.111 0.00 0.00 42.21 5.34
715 737 2.613506 CCCTTTCGTTGGACGCACC 61.614 63.158 0.00 0.00 42.21 5.01
716 738 1.597027 CCTTTCGTTGGACGCACCT 60.597 57.895 0.00 0.00 42.21 4.00
717 739 0.320073 CCTTTCGTTGGACGCACCTA 60.320 55.000 0.00 0.00 42.21 3.08
718 740 0.788391 CTTTCGTTGGACGCACCTAC 59.212 55.000 0.00 4.36 42.21 3.18
719 741 0.600782 TTTCGTTGGACGCACCTACC 60.601 55.000 7.83 0.00 42.21 3.18
720 742 1.746322 TTCGTTGGACGCACCTACCA 61.746 55.000 7.83 0.00 42.21 3.25
721 743 1.301087 CGTTGGACGCACCTACCAA 60.301 57.895 0.00 0.00 40.36 3.67
722 744 4.783667 TTGGACGCACCTACCAAC 57.216 55.556 0.00 0.00 38.52 3.77
723 745 1.071814 TTGGACGCACCTACCAACC 59.928 57.895 0.00 0.00 38.52 3.77
724 746 1.412453 TTGGACGCACCTACCAACCT 61.412 55.000 0.00 0.00 38.52 3.50
725 747 0.542467 TGGACGCACCTACCAACCTA 60.542 55.000 0.00 0.00 39.86 3.08
726 748 0.609662 GGACGCACCTACCAACCTAA 59.390 55.000 0.00 0.00 35.41 2.69
727 749 1.002315 GGACGCACCTACCAACCTAAA 59.998 52.381 0.00 0.00 35.41 1.85
728 750 2.355412 GGACGCACCTACCAACCTAAAT 60.355 50.000 0.00 0.00 35.41 1.40
729 751 2.934553 GACGCACCTACCAACCTAAATC 59.065 50.000 0.00 0.00 0.00 2.17
730 752 2.303600 ACGCACCTACCAACCTAAATCA 59.696 45.455 0.00 0.00 0.00 2.57
731 753 3.244630 ACGCACCTACCAACCTAAATCAA 60.245 43.478 0.00 0.00 0.00 2.57
732 754 3.754323 CGCACCTACCAACCTAAATCAAA 59.246 43.478 0.00 0.00 0.00 2.69
733 755 4.216687 CGCACCTACCAACCTAAATCAAAA 59.783 41.667 0.00 0.00 0.00 2.44
734 756 5.278561 CGCACCTACCAACCTAAATCAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
735 757 6.156519 GCACCTACCAACCTAAATCAAAAAG 58.843 40.000 0.00 0.00 0.00 2.27
736 758 6.239204 GCACCTACCAACCTAAATCAAAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
737 759 7.145323 CACCTACCAACCTAAATCAAAAAGTG 58.855 38.462 0.00 0.00 0.00 3.16
738 760 6.266786 ACCTACCAACCTAAATCAAAAAGTGG 59.733 38.462 0.00 0.00 0.00 4.00
739 761 6.492087 CCTACCAACCTAAATCAAAAAGTGGA 59.508 38.462 0.00 0.00 0.00 4.02
740 762 6.156748 ACCAACCTAAATCAAAAAGTGGAC 57.843 37.500 0.00 0.00 0.00 4.02
741 763 5.659079 ACCAACCTAAATCAAAAAGTGGACA 59.341 36.000 0.00 0.00 0.00 4.02
742 764 5.983118 CCAACCTAAATCAAAAAGTGGACAC 59.017 40.000 0.00 0.00 0.00 3.67
743 765 6.406400 CCAACCTAAATCAAAAAGTGGACACA 60.406 38.462 5.14 0.00 0.00 3.72
756 778 3.009723 GTGGACACACATATCTGTTGGG 58.990 50.000 0.00 0.00 46.90 4.12
757 779 2.017049 GGACACACATATCTGTTGGGC 58.983 52.381 0.00 0.00 31.62 5.36
758 780 2.017049 GACACACATATCTGTTGGGCC 58.983 52.381 0.00 0.00 31.62 5.80
759 781 1.016627 CACACATATCTGTTGGGCCG 58.983 55.000 0.00 0.00 31.62 6.13
760 782 0.908910 ACACATATCTGTTGGGCCGA 59.091 50.000 0.00 0.00 31.62 5.54
761 783 1.134401 ACACATATCTGTTGGGCCGAG 60.134 52.381 0.00 0.00 31.62 4.63
762 784 0.179045 ACATATCTGTTGGGCCGAGC 60.179 55.000 0.00 0.00 28.70 5.03
763 785 3.528113 ACATATCTGTTGGGCCGAGCC 62.528 57.143 0.00 6.38 39.45 4.70
777 799 2.247311 CGAGCCAAACGGATGAAAAG 57.753 50.000 0.00 0.00 0.00 2.27
778 800 1.535462 CGAGCCAAACGGATGAAAAGT 59.465 47.619 0.00 0.00 0.00 2.66
779 801 2.665519 CGAGCCAAACGGATGAAAAGTG 60.666 50.000 0.00 0.00 0.00 3.16
780 802 2.552315 GAGCCAAACGGATGAAAAGTGA 59.448 45.455 0.00 0.00 0.00 3.41
781 803 2.955660 AGCCAAACGGATGAAAAGTGAA 59.044 40.909 0.00 0.00 0.00 3.18
782 804 3.049912 GCCAAACGGATGAAAAGTGAAC 58.950 45.455 0.00 0.00 0.00 3.18
783 805 3.490078 GCCAAACGGATGAAAAGTGAACA 60.490 43.478 0.00 0.00 0.00 3.18
784 806 4.677584 CCAAACGGATGAAAAGTGAACAA 58.322 39.130 0.00 0.00 0.00 2.83
785 807 5.105752 CCAAACGGATGAAAAGTGAACAAA 58.894 37.500 0.00 0.00 0.00 2.83
786 808 5.231991 CCAAACGGATGAAAAGTGAACAAAG 59.768 40.000 0.00 0.00 0.00 2.77
787 809 3.964909 ACGGATGAAAAGTGAACAAAGC 58.035 40.909 0.00 0.00 0.00 3.51
788 810 3.380004 ACGGATGAAAAGTGAACAAAGCA 59.620 39.130 0.00 0.00 0.00 3.91
789 811 4.037923 ACGGATGAAAAGTGAACAAAGCAT 59.962 37.500 0.00 0.00 0.00 3.79
790 812 4.383649 CGGATGAAAAGTGAACAAAGCATG 59.616 41.667 0.00 0.00 0.00 4.06
791 813 5.291971 GGATGAAAAGTGAACAAAGCATGT 58.708 37.500 0.00 0.00 46.82 3.21
792 814 5.176223 GGATGAAAAGTGAACAAAGCATGTG 59.824 40.000 0.00 0.00 42.99 3.21
793 815 5.070770 TGAAAAGTGAACAAAGCATGTGT 57.929 34.783 0.00 0.00 39.08 3.72
794 816 5.101628 TGAAAAGTGAACAAAGCATGTGTC 58.898 37.500 0.00 0.00 33.49 3.67
795 817 3.715628 AAGTGAACAAAGCATGTGTCC 57.284 42.857 0.00 0.00 33.49 4.02
796 818 2.653726 AGTGAACAAAGCATGTGTCCA 58.346 42.857 0.00 0.00 33.49 4.02
797 819 3.225104 AGTGAACAAAGCATGTGTCCAT 58.775 40.909 0.00 0.00 33.49 3.41
798 820 3.254166 AGTGAACAAAGCATGTGTCCATC 59.746 43.478 0.00 0.00 33.49 3.51
799 821 3.254166 GTGAACAAAGCATGTGTCCATCT 59.746 43.478 0.00 0.00 33.49 2.90
800 822 4.455533 GTGAACAAAGCATGTGTCCATCTA 59.544 41.667 0.00 0.00 33.49 1.98
801 823 4.696877 TGAACAAAGCATGTGTCCATCTAG 59.303 41.667 0.00 0.00 33.49 2.43
802 824 4.558226 ACAAAGCATGTGTCCATCTAGA 57.442 40.909 0.00 0.00 41.93 2.43
803 825 4.256920 ACAAAGCATGTGTCCATCTAGAC 58.743 43.478 0.00 0.00 41.93 2.59
804 826 2.879002 AGCATGTGTCCATCTAGACG 57.121 50.000 0.00 0.00 39.77 4.18
805 827 2.379005 AGCATGTGTCCATCTAGACGA 58.621 47.619 0.00 0.00 39.77 4.20
806 828 2.760650 AGCATGTGTCCATCTAGACGAA 59.239 45.455 0.00 0.00 39.77 3.85
807 829 3.195610 AGCATGTGTCCATCTAGACGAAA 59.804 43.478 0.00 0.00 39.77 3.46
808 830 3.932710 GCATGTGTCCATCTAGACGAAAA 59.067 43.478 0.00 0.00 39.77 2.29
809 831 4.391830 GCATGTGTCCATCTAGACGAAAAA 59.608 41.667 0.00 0.00 39.77 1.94
810 832 5.065218 GCATGTGTCCATCTAGACGAAAAAT 59.935 40.000 0.00 0.00 39.77 1.82
811 833 6.481134 CATGTGTCCATCTAGACGAAAAATG 58.519 40.000 0.00 0.00 39.77 2.32
812 834 5.789521 TGTGTCCATCTAGACGAAAAATGA 58.210 37.500 0.00 0.00 39.77 2.57
813 835 6.227522 TGTGTCCATCTAGACGAAAAATGAA 58.772 36.000 0.00 0.00 39.77 2.57
814 836 6.147164 TGTGTCCATCTAGACGAAAAATGAAC 59.853 38.462 0.00 0.00 39.77 3.18
815 837 6.147164 GTGTCCATCTAGACGAAAAATGAACA 59.853 38.462 0.00 0.00 39.77 3.18
816 838 6.708502 TGTCCATCTAGACGAAAAATGAACAA 59.291 34.615 0.00 0.00 39.77 2.83
817 839 7.227711 TGTCCATCTAGACGAAAAATGAACAAA 59.772 33.333 0.00 0.00 39.77 2.83
818 840 8.073768 GTCCATCTAGACGAAAAATGAACAAAA 58.926 33.333 0.00 0.00 0.00 2.44
819 841 8.625651 TCCATCTAGACGAAAAATGAACAAAAA 58.374 29.630 0.00 0.00 0.00 1.94
820 842 8.905702 CCATCTAGACGAAAAATGAACAAAAAG 58.094 33.333 0.00 0.00 0.00 2.27
821 843 9.450807 CATCTAGACGAAAAATGAACAAAAAGT 57.549 29.630 0.00 0.00 0.00 2.66
822 844 8.835467 TCTAGACGAAAAATGAACAAAAAGTG 57.165 30.769 0.00 0.00 0.00 3.16
823 845 6.331170 AGACGAAAAATGAACAAAAAGTGC 57.669 33.333 0.00 0.00 0.00 4.40
824 846 5.004345 AGACGAAAAATGAACAAAAAGTGCG 59.996 36.000 0.00 0.00 0.00 5.34
825 847 4.623595 ACGAAAAATGAACAAAAAGTGCGT 59.376 33.333 0.00 0.00 0.00 5.24
826 848 5.180377 CGAAAAATGAACAAAAAGTGCGTC 58.820 37.500 0.00 0.00 0.00 5.19
827 849 5.220117 CGAAAAATGAACAAAAAGTGCGTCA 60.220 36.000 0.00 0.00 0.00 4.35
828 850 5.448926 AAAATGAACAAAAAGTGCGTCAC 57.551 34.783 2.28 2.28 29.77 3.67
830 852 5.493133 AATGAACAAAAAGTGCGTCACTA 57.507 34.783 11.92 0.00 44.62 2.74
831 853 5.689383 ATGAACAAAAAGTGCGTCACTAT 57.311 34.783 11.92 3.50 44.62 2.12
832 854 6.795098 ATGAACAAAAAGTGCGTCACTATA 57.205 33.333 11.92 0.00 44.62 1.31
833 855 6.223138 TGAACAAAAAGTGCGTCACTATAG 57.777 37.500 11.92 0.00 44.62 1.31
834 856 5.178623 TGAACAAAAAGTGCGTCACTATAGG 59.821 40.000 11.92 6.54 44.62 2.57
835 857 3.435671 ACAAAAAGTGCGTCACTATAGGC 59.564 43.478 11.92 0.00 44.62 3.93
836 858 2.311124 AAAGTGCGTCACTATAGGCC 57.689 50.000 11.92 0.00 44.62 5.19
837 859 0.102481 AAGTGCGTCACTATAGGCCG 59.898 55.000 11.92 4.32 44.62 6.13
838 860 1.299926 GTGCGTCACTATAGGCCGG 60.300 63.158 4.43 0.00 0.00 6.13
839 861 2.355956 GCGTCACTATAGGCCGGC 60.356 66.667 21.18 21.18 0.00 6.13
840 862 2.050351 CGTCACTATAGGCCGGCG 60.050 66.667 22.54 8.77 0.00 6.46
841 863 2.355956 GTCACTATAGGCCGGCGC 60.356 66.667 22.54 13.90 0.00 6.53
842 864 3.973516 TCACTATAGGCCGGCGCG 61.974 66.667 22.54 0.00 35.02 6.86
843 865 4.280494 CACTATAGGCCGGCGCGT 62.280 66.667 22.54 10.32 36.89 6.01
844 866 3.534056 ACTATAGGCCGGCGCGTT 61.534 61.111 22.54 8.53 34.31 4.84
845 867 3.036084 CTATAGGCCGGCGCGTTG 61.036 66.667 22.54 6.67 34.31 4.10
846 868 4.595538 TATAGGCCGGCGCGTTGG 62.596 66.667 22.54 11.48 34.31 3.77
855 877 3.044305 GCGCGTTGGAGTTGCTCT 61.044 61.111 8.43 0.00 0.00 4.09
856 878 2.607892 GCGCGTTGGAGTTGCTCTT 61.608 57.895 8.43 0.00 0.00 2.85
857 879 1.289109 GCGCGTTGGAGTTGCTCTTA 61.289 55.000 8.43 0.00 0.00 2.10
859 881 1.732259 CGCGTTGGAGTTGCTCTTATT 59.268 47.619 0.00 0.00 0.00 1.40
945 968 0.382873 GTGAACCCGTGAAAACCACC 59.617 55.000 0.00 0.00 42.76 4.61
989 1012 1.314534 TATCCTTCCCGCGTCAACGA 61.315 55.000 4.92 0.00 43.02 3.85
1193 1240 4.587189 GCCGTCCCTCCGATTCCG 62.587 72.222 0.00 0.00 0.00 4.30
1645 1743 0.031585 CCTGGTGAACACGTTCGAGA 59.968 55.000 5.51 0.00 42.28 4.04
1734 1841 1.142314 GTACTGCGTCGGGCCATTA 59.858 57.895 4.39 0.00 42.61 1.90
1898 2023 3.319198 GGAGAACTCCGGCCACCA 61.319 66.667 2.24 0.00 40.36 4.17
1920 2045 1.131303 TCCTGTGGGTCGTGGGAAAT 61.131 55.000 0.00 0.00 0.00 2.17
2200 2397 3.849951 CGGAGATGGTCGGGTGGG 61.850 72.222 0.00 0.00 0.00 4.61
2668 2872 6.321690 TGTTTTCATCGGGGTTTTCTTCTTAA 59.678 34.615 0.00 0.00 0.00 1.85
2698 2902 7.493320 TCCAACAACGATTAAGTTAGCGAATAT 59.507 33.333 12.37 0.00 32.35 1.28
2786 2991 9.793252 GCAAAATTATTATAGCACATCCATAGG 57.207 33.333 0.00 0.00 0.00 2.57
2917 3204 1.663695 ATTATTGAGCCAACGGTCCG 58.336 50.000 10.48 10.48 35.55 4.79
2925 3217 4.390048 CAACGGTCCGTGGGAATT 57.610 55.556 19.67 0.00 39.99 2.17
2926 3218 1.873165 CAACGGTCCGTGGGAATTG 59.127 57.895 19.67 7.45 39.99 2.32
2965 3257 0.609151 TATGGGGCGTTCGTTCTGAA 59.391 50.000 0.00 0.00 0.00 3.02
2974 3266 1.134907 GTTCGTTCTGAAGCCCGGATA 60.135 52.381 0.73 0.00 37.23 2.59
2976 3268 1.760613 TCGTTCTGAAGCCCGGATATT 59.239 47.619 0.73 0.00 0.00 1.28
2983 3275 5.996644 TCTGAAGCCCGGATATTAAAGAAA 58.003 37.500 0.73 0.00 0.00 2.52
3002 3294 3.558931 AATGACACATCGCAATCCCTA 57.441 42.857 0.00 0.00 0.00 3.53
3156 3454 4.734854 CGCATATATGACAACTTTTGTGCC 59.265 41.667 17.10 0.00 45.52 5.01
3170 3468 3.853831 TTGTGCCTAGCATGTCAATTG 57.146 42.857 0.00 0.00 41.91 2.32
3177 3475 4.130118 CCTAGCATGTCAATTGTCCCTAC 58.870 47.826 5.13 0.00 0.00 3.18
3193 3491 1.945394 CCTACATGGTGCATCTTGCTC 59.055 52.381 12.50 0.00 45.31 4.26
3199 3497 3.720601 TGCATCTTGCTCCGGCCT 61.721 61.111 0.00 0.00 45.31 5.19
3217 3515 4.503817 CGGCCTTGGAGATGAGATTCATTA 60.504 45.833 0.00 0.00 37.20 1.90
3280 3578 2.965831 TGACACTCCCCTATGATGTAGC 59.034 50.000 0.00 0.00 0.00 3.58
3293 3591 9.671279 CCCTATGATGTAGCATGACAATTATTA 57.329 33.333 0.00 0.00 31.83 0.98
3301 3599 9.777297 TGTAGCATGACAATTATTAGAAGCATA 57.223 29.630 0.00 0.00 0.00 3.14
3331 3629 6.697019 ACAACTTTTGTGTAGCATGTCAATTC 59.303 34.615 0.00 0.00 43.48 2.17
3332 3630 6.639632 ACTTTTGTGTAGCATGTCAATTCT 57.360 33.333 0.00 0.00 0.00 2.40
3333 3631 6.672147 ACTTTTGTGTAGCATGTCAATTCTC 58.328 36.000 0.00 0.00 0.00 2.87
3334 3632 5.627499 TTTGTGTAGCATGTCAATTCTCC 57.373 39.130 0.00 0.00 0.00 3.71
3335 3633 3.609853 TGTGTAGCATGTCAATTCTCCC 58.390 45.455 0.00 0.00 0.00 4.30
3336 3634 3.264193 TGTGTAGCATGTCAATTCTCCCT 59.736 43.478 0.00 0.00 0.00 4.20
3337 3635 4.469586 TGTGTAGCATGTCAATTCTCCCTA 59.530 41.667 0.00 0.00 0.00 3.53
3338 3636 4.811557 GTGTAGCATGTCAATTCTCCCTAC 59.188 45.833 0.00 0.00 0.00 3.18
3339 3637 4.469586 TGTAGCATGTCAATTCTCCCTACA 59.530 41.667 0.00 0.00 33.60 2.74
3340 3638 4.574674 AGCATGTCAATTCTCCCTACAA 57.425 40.909 0.00 0.00 0.00 2.41
3341 3639 4.265073 AGCATGTCAATTCTCCCTACAAC 58.735 43.478 0.00 0.00 0.00 3.32
3342 3640 4.009675 GCATGTCAATTCTCCCTACAACA 58.990 43.478 0.00 0.00 0.00 3.33
3343 3641 4.095483 GCATGTCAATTCTCCCTACAACAG 59.905 45.833 0.00 0.00 0.00 3.16
3344 3642 3.674997 TGTCAATTCTCCCTACAACAGC 58.325 45.455 0.00 0.00 0.00 4.40
3345 3643 3.072330 TGTCAATTCTCCCTACAACAGCA 59.928 43.478 0.00 0.00 0.00 4.41
3346 3644 4.263462 TGTCAATTCTCCCTACAACAGCAT 60.263 41.667 0.00 0.00 0.00 3.79
3347 3645 4.095483 GTCAATTCTCCCTACAACAGCATG 59.905 45.833 0.00 0.00 46.00 4.06
3348 3646 2.787473 TTCTCCCTACAACAGCATGG 57.213 50.000 0.00 0.00 43.62 3.66
3349 3647 0.253044 TCTCCCTACAACAGCATGGC 59.747 55.000 0.00 0.00 43.62 4.40
3350 3648 0.035152 CTCCCTACAACAGCATGGCA 60.035 55.000 0.00 0.00 43.62 4.92
3351 3649 0.403655 TCCCTACAACAGCATGGCAA 59.596 50.000 0.00 0.00 43.62 4.52
3352 3650 1.005805 TCCCTACAACAGCATGGCAAT 59.994 47.619 0.00 0.00 43.62 3.56
3353 3651 1.826720 CCCTACAACAGCATGGCAATT 59.173 47.619 0.00 0.00 43.62 2.32
3368 3666 3.261580 GGCAATTTCTAAACATGTGGGC 58.738 45.455 0.00 0.00 0.00 5.36
3374 3672 4.846779 TTCTAAACATGTGGGCAACTTC 57.153 40.909 0.00 0.00 0.00 3.01
3391 3689 2.041755 ACTTCCCCCTTTTCTTAGCCTG 59.958 50.000 0.00 0.00 0.00 4.85
3396 3694 1.004745 CCCTTTTCTTAGCCTGCCAGA 59.995 52.381 0.00 0.00 0.00 3.86
3405 3703 1.227615 GCCTGCCAGATCTCTCTGC 60.228 63.158 0.00 0.00 46.39 4.26
3406 3704 1.688269 GCCTGCCAGATCTCTCTGCT 61.688 60.000 0.00 0.00 46.39 4.24
3407 3705 1.702182 CCTGCCAGATCTCTCTGCTA 58.298 55.000 0.00 0.00 46.39 3.49
3408 3706 1.340889 CCTGCCAGATCTCTCTGCTAC 59.659 57.143 0.00 0.00 46.39 3.58
3409 3707 2.030371 CTGCCAGATCTCTCTGCTACA 58.970 52.381 0.00 0.00 46.39 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.943002 CCGGTCAAAATCTACTTAAACATAACT 58.057 33.333 0.00 0.00 0.00 2.24
28 29 8.724229 ACCGGTCAAAATCTACTTAAACATAAC 58.276 33.333 0.00 0.00 0.00 1.89
29 30 8.723311 CACCGGTCAAAATCTACTTAAACATAA 58.277 33.333 2.59 0.00 0.00 1.90
30 31 7.879160 ACACCGGTCAAAATCTACTTAAACATA 59.121 33.333 2.59 0.00 0.00 2.29
31 32 6.713450 ACACCGGTCAAAATCTACTTAAACAT 59.287 34.615 2.59 0.00 0.00 2.71
32 33 6.056884 ACACCGGTCAAAATCTACTTAAACA 58.943 36.000 2.59 0.00 0.00 2.83
33 34 6.549912 ACACCGGTCAAAATCTACTTAAAC 57.450 37.500 2.59 0.00 0.00 2.01
34 35 7.282675 TCAAACACCGGTCAAAATCTACTTAAA 59.717 33.333 2.59 0.00 0.00 1.52
35 36 6.766944 TCAAACACCGGTCAAAATCTACTTAA 59.233 34.615 2.59 0.00 0.00 1.85
36 37 6.203338 GTCAAACACCGGTCAAAATCTACTTA 59.797 38.462 2.59 0.00 0.00 2.24
37 38 5.008316 GTCAAACACCGGTCAAAATCTACTT 59.992 40.000 2.59 0.00 0.00 2.24
38 39 4.514066 GTCAAACACCGGTCAAAATCTACT 59.486 41.667 2.59 0.00 0.00 2.57
39 40 4.514066 AGTCAAACACCGGTCAAAATCTAC 59.486 41.667 2.59 0.00 0.00 2.59
40 41 4.710324 AGTCAAACACCGGTCAAAATCTA 58.290 39.130 2.59 0.00 0.00 1.98
41 42 3.551846 AGTCAAACACCGGTCAAAATCT 58.448 40.909 2.59 0.00 0.00 2.40
42 43 3.982576 AGTCAAACACCGGTCAAAATC 57.017 42.857 2.59 0.00 0.00 2.17
43 44 3.252458 GCTAGTCAAACACCGGTCAAAAT 59.748 43.478 2.59 0.00 0.00 1.82
44 45 2.614983 GCTAGTCAAACACCGGTCAAAA 59.385 45.455 2.59 0.00 0.00 2.44
45 46 2.215196 GCTAGTCAAACACCGGTCAAA 58.785 47.619 2.59 0.00 0.00 2.69
46 47 1.541670 GGCTAGTCAAACACCGGTCAA 60.542 52.381 2.59 0.00 0.00 3.18
47 48 0.034337 GGCTAGTCAAACACCGGTCA 59.966 55.000 2.59 0.00 0.00 4.02
48 49 0.034337 TGGCTAGTCAAACACCGGTC 59.966 55.000 2.59 0.00 0.00 4.79
49 50 0.690762 ATGGCTAGTCAAACACCGGT 59.309 50.000 0.00 0.00 0.00 5.28
50 51 1.821216 AATGGCTAGTCAAACACCGG 58.179 50.000 0.00 0.00 0.00 5.28
51 52 4.394920 ACATAAATGGCTAGTCAAACACCG 59.605 41.667 0.00 0.00 0.00 4.94
52 53 5.897377 ACATAAATGGCTAGTCAAACACC 57.103 39.130 0.00 0.00 0.00 4.16
53 54 7.372451 TGTACATAAATGGCTAGTCAAACAC 57.628 36.000 0.00 0.00 0.00 3.32
54 55 7.987750 TTGTACATAAATGGCTAGTCAAACA 57.012 32.000 0.00 0.00 0.00 2.83
58 59 8.783093 GCATAATTGTACATAAATGGCTAGTCA 58.217 33.333 0.00 0.00 0.00 3.41
59 60 9.003658 AGCATAATTGTACATAAATGGCTAGTC 57.996 33.333 0.00 0.00 0.00 2.59
60 61 8.924511 AGCATAATTGTACATAAATGGCTAGT 57.075 30.769 0.00 0.00 0.00 2.57
61 62 9.616634 CAAGCATAATTGTACATAAATGGCTAG 57.383 33.333 0.00 0.00 0.00 3.42
62 63 9.348476 TCAAGCATAATTGTACATAAATGGCTA 57.652 29.630 0.00 0.00 0.00 3.93
63 64 8.236585 TCAAGCATAATTGTACATAAATGGCT 57.763 30.769 0.00 0.00 0.00 4.75
64 65 9.480053 AATCAAGCATAATTGTACATAAATGGC 57.520 29.630 0.00 0.00 0.00 4.40
72 73 9.448438 ACAGACTTAATCAAGCATAATTGTACA 57.552 29.630 0.00 0.00 34.94 2.90
75 76 9.846248 GAAACAGACTTAATCAAGCATAATTGT 57.154 29.630 0.00 0.00 34.94 2.71
76 77 9.844790 TGAAACAGACTTAATCAAGCATAATTG 57.155 29.630 0.00 0.00 34.94 2.32
78 79 9.453572 TCTGAAACAGACTTAATCAAGCATAAT 57.546 29.630 0.00 0.00 35.39 1.28
79 80 8.846943 TCTGAAACAGACTTAATCAAGCATAA 57.153 30.769 0.00 0.00 35.39 1.90
94 95 0.596600 GCCGACGTGTCTGAAACAGA 60.597 55.000 0.00 0.00 38.97 3.41
95 96 0.874175 TGCCGACGTGTCTGAAACAG 60.874 55.000 0.00 0.00 38.97 3.16
96 97 0.460459 TTGCCGACGTGTCTGAAACA 60.460 50.000 0.00 0.00 34.78 2.83
97 98 0.653636 TTTGCCGACGTGTCTGAAAC 59.346 50.000 0.00 0.00 0.00 2.78
98 99 1.370609 TTTTGCCGACGTGTCTGAAA 58.629 45.000 0.00 0.00 0.00 2.69
99 100 1.370609 TTTTTGCCGACGTGTCTGAA 58.629 45.000 0.00 0.00 0.00 3.02
100 101 1.588674 ATTTTTGCCGACGTGTCTGA 58.411 45.000 0.00 0.00 0.00 3.27
101 102 3.059188 ACTTATTTTTGCCGACGTGTCTG 60.059 43.478 0.00 0.00 0.00 3.51
102 103 3.135994 ACTTATTTTTGCCGACGTGTCT 58.864 40.909 0.00 0.00 0.00 3.41
103 104 3.531262 ACTTATTTTTGCCGACGTGTC 57.469 42.857 0.00 0.00 0.00 3.67
104 105 4.060205 AGTACTTATTTTTGCCGACGTGT 58.940 39.130 0.00 0.00 0.00 4.49
105 106 4.657075 AGTACTTATTTTTGCCGACGTG 57.343 40.909 0.00 0.00 0.00 4.49
106 107 4.152938 GGAAGTACTTATTTTTGCCGACGT 59.847 41.667 8.42 0.00 0.00 4.34
107 108 4.390909 AGGAAGTACTTATTTTTGCCGACG 59.609 41.667 8.42 0.00 0.00 5.12
108 109 5.163784 GGAGGAAGTACTTATTTTTGCCGAC 60.164 44.000 8.42 4.04 0.00 4.79
109 110 4.939439 GGAGGAAGTACTTATTTTTGCCGA 59.061 41.667 8.42 0.00 0.00 5.54
110 111 4.698304 TGGAGGAAGTACTTATTTTTGCCG 59.302 41.667 8.42 0.00 0.00 5.69
111 112 6.603599 AGATGGAGGAAGTACTTATTTTTGCC 59.396 38.462 8.42 3.59 0.00 4.52
112 113 7.631717 AGATGGAGGAAGTACTTATTTTTGC 57.368 36.000 8.42 0.00 0.00 3.68
113 114 9.331282 CCTAGATGGAGGAAGTACTTATTTTTG 57.669 37.037 8.42 0.00 39.15 2.44
114 115 9.059023 ACCTAGATGGAGGAAGTACTTATTTTT 57.941 33.333 8.42 0.00 39.15 1.94
115 116 8.487028 CACCTAGATGGAGGAAGTACTTATTTT 58.513 37.037 8.42 0.00 39.15 1.82
116 117 7.844779 TCACCTAGATGGAGGAAGTACTTATTT 59.155 37.037 8.42 0.00 39.15 1.40
117 118 7.363031 TCACCTAGATGGAGGAAGTACTTATT 58.637 38.462 8.42 0.00 39.15 1.40
118 119 6.923670 TCACCTAGATGGAGGAAGTACTTAT 58.076 40.000 8.42 0.00 39.15 1.73
119 120 6.337185 TCACCTAGATGGAGGAAGTACTTA 57.663 41.667 8.42 0.00 39.15 2.24
120 121 5.208294 TCACCTAGATGGAGGAAGTACTT 57.792 43.478 8.13 8.13 39.15 2.24
127 128 5.777449 TGACTTATTCACCTAGATGGAGGA 58.223 41.667 0.00 0.00 39.15 3.71
205 206 3.753272 GCCTGTCACATCAGTATGTTTGT 59.247 43.478 0.00 0.00 44.07 2.83
222 223 7.256261 CCATCTCTCTCTTCTATAATTGCCTGT 60.256 40.741 0.00 0.00 0.00 4.00
283 288 4.842574 TGCATGACACATAGTAACACCAT 58.157 39.130 0.00 0.00 0.00 3.55
389 394 7.067981 AGTGGGGAGTAATTTAGACTAGTAACG 59.932 40.741 0.00 0.00 0.00 3.18
403 408 2.706190 GCTGGTCATAGTGGGGAGTAAT 59.294 50.000 0.00 0.00 0.00 1.89
502 514 2.157668 CGACATGCAGTGGTTAGTTCAC 59.842 50.000 0.00 0.00 35.51 3.18
547 559 0.667993 ATGTGGGACGTGCAAGTTTG 59.332 50.000 9.96 0.00 0.00 2.93
550 562 0.320771 GAGATGTGGGACGTGCAAGT 60.321 55.000 9.96 4.50 0.00 3.16
552 564 0.396435 AAGAGATGTGGGACGTGCAA 59.604 50.000 9.96 0.00 0.00 4.08
559 571 4.842531 TCAAGCAATAAGAGATGTGGGA 57.157 40.909 0.00 0.00 0.00 4.37
596 618 3.886505 TGCATTAACTTCCACCTCGTTTT 59.113 39.130 0.00 0.00 0.00 2.43
658 680 5.401674 CCTTCGTTCTAGTTGTGTAAGTCAC 59.598 44.000 0.00 0.00 46.31 3.67
670 692 4.857679 AGACATACTCCCTTCGTTCTAGT 58.142 43.478 0.00 0.00 0.00 2.57
676 698 1.749634 CGGAAGACATACTCCCTTCGT 59.250 52.381 0.00 0.00 37.70 3.85
679 701 0.831307 GGCGGAAGACATACTCCCTT 59.169 55.000 0.00 0.00 40.66 3.95
689 711 1.574702 CCAACGAAAGGGCGGAAGAC 61.575 60.000 0.00 0.00 39.70 3.01
690 712 1.302192 CCAACGAAAGGGCGGAAGA 60.302 57.895 0.00 0.00 35.12 2.87
691 713 1.302192 TCCAACGAAAGGGCGGAAG 60.302 57.895 0.00 0.00 35.12 3.46
692 714 1.598685 GTCCAACGAAAGGGCGGAA 60.599 57.895 0.00 0.00 35.12 4.30
693 715 2.031465 GTCCAACGAAAGGGCGGA 59.969 61.111 0.00 0.00 35.12 5.54
696 718 2.975799 TGCGTCCAACGAAAGGGC 60.976 61.111 3.28 0.00 46.05 5.19
697 719 2.613506 GGTGCGTCCAACGAAAGGG 61.614 63.158 3.28 0.00 46.05 3.95
698 720 0.320073 TAGGTGCGTCCAACGAAAGG 60.320 55.000 3.28 0.00 46.05 3.11
699 721 0.788391 GTAGGTGCGTCCAACGAAAG 59.212 55.000 3.28 0.00 46.05 2.62
700 722 0.600782 GGTAGGTGCGTCCAACGAAA 60.601 55.000 3.28 0.00 46.05 3.46
701 723 1.005867 GGTAGGTGCGTCCAACGAA 60.006 57.895 3.28 0.00 46.05 3.85
702 724 1.746322 TTGGTAGGTGCGTCCAACGA 61.746 55.000 3.28 0.00 46.05 3.85
703 725 1.301087 TTGGTAGGTGCGTCCAACG 60.301 57.895 0.00 0.00 45.88 4.10
704 726 4.783667 TTGGTAGGTGCGTCCAAC 57.216 55.556 0.75 0.00 36.48 3.77
705 727 1.071814 GGTTGGTAGGTGCGTCCAA 59.928 57.895 0.75 0.00 38.65 3.53
706 728 0.542467 TAGGTTGGTAGGTGCGTCCA 60.542 55.000 0.75 0.00 39.02 4.02
707 729 0.609662 TTAGGTTGGTAGGTGCGTCC 59.390 55.000 0.00 0.00 0.00 4.79
708 730 2.460757 TTTAGGTTGGTAGGTGCGTC 57.539 50.000 0.00 0.00 0.00 5.19
709 731 2.303600 TGATTTAGGTTGGTAGGTGCGT 59.696 45.455 0.00 0.00 0.00 5.24
710 732 2.980568 TGATTTAGGTTGGTAGGTGCG 58.019 47.619 0.00 0.00 0.00 5.34
711 733 5.715434 TTTTGATTTAGGTTGGTAGGTGC 57.285 39.130 0.00 0.00 0.00 5.01
712 734 7.145323 CACTTTTTGATTTAGGTTGGTAGGTG 58.855 38.462 0.00 0.00 0.00 4.00
713 735 6.266786 CCACTTTTTGATTTAGGTTGGTAGGT 59.733 38.462 0.00 0.00 0.00 3.08
714 736 6.492087 TCCACTTTTTGATTTAGGTTGGTAGG 59.508 38.462 0.00 0.00 0.00 3.18
715 737 7.013846 TGTCCACTTTTTGATTTAGGTTGGTAG 59.986 37.037 0.00 0.00 0.00 3.18
716 738 6.834451 TGTCCACTTTTTGATTTAGGTTGGTA 59.166 34.615 0.00 0.00 0.00 3.25
717 739 5.659079 TGTCCACTTTTTGATTTAGGTTGGT 59.341 36.000 0.00 0.00 0.00 3.67
718 740 5.983118 GTGTCCACTTTTTGATTTAGGTTGG 59.017 40.000 0.00 0.00 0.00 3.77
719 741 6.475402 GTGTGTCCACTTTTTGATTTAGGTTG 59.525 38.462 0.00 0.00 38.61 3.77
720 742 6.153680 TGTGTGTCCACTTTTTGATTTAGGTT 59.846 34.615 0.00 0.00 42.34 3.50
721 743 5.654650 TGTGTGTCCACTTTTTGATTTAGGT 59.345 36.000 0.00 0.00 42.34 3.08
722 744 6.142818 TGTGTGTCCACTTTTTGATTTAGG 57.857 37.500 0.00 0.00 42.34 2.69
723 745 9.559958 GATATGTGTGTCCACTTTTTGATTTAG 57.440 33.333 0.00 0.00 42.34 1.85
724 746 9.295825 AGATATGTGTGTCCACTTTTTGATTTA 57.704 29.630 0.00 0.00 42.34 1.40
725 747 8.084073 CAGATATGTGTGTCCACTTTTTGATTT 58.916 33.333 0.00 0.00 42.34 2.17
726 748 7.231317 ACAGATATGTGTGTCCACTTTTTGATT 59.769 33.333 4.42 0.00 42.34 2.57
727 749 6.716628 ACAGATATGTGTGTCCACTTTTTGAT 59.283 34.615 4.42 0.00 42.34 2.57
728 750 6.061441 ACAGATATGTGTGTCCACTTTTTGA 58.939 36.000 4.42 0.00 42.34 2.69
729 751 6.317789 ACAGATATGTGTGTCCACTTTTTG 57.682 37.500 4.42 0.00 42.34 2.44
730 752 6.239008 CCAACAGATATGTGTGTCCACTTTTT 60.239 38.462 6.23 0.00 42.34 1.94
731 753 5.241506 CCAACAGATATGTGTGTCCACTTTT 59.758 40.000 6.23 0.00 42.34 2.27
732 754 4.761739 CCAACAGATATGTGTGTCCACTTT 59.238 41.667 6.23 0.00 42.34 2.66
733 755 4.326826 CCAACAGATATGTGTGTCCACTT 58.673 43.478 6.23 0.00 42.34 3.16
734 756 3.307691 CCCAACAGATATGTGTGTCCACT 60.308 47.826 6.23 0.00 42.34 4.00
735 757 3.009723 CCCAACAGATATGTGTGTCCAC 58.990 50.000 6.23 0.00 42.19 4.02
736 758 2.617788 GCCCAACAGATATGTGTGTCCA 60.618 50.000 6.23 0.00 29.28 4.02
737 759 2.017049 GCCCAACAGATATGTGTGTCC 58.983 52.381 6.23 0.00 29.28 4.02
738 760 2.017049 GGCCCAACAGATATGTGTGTC 58.983 52.381 6.23 0.00 29.28 3.67
739 761 1.678728 CGGCCCAACAGATATGTGTGT 60.679 52.381 6.23 0.00 32.44 3.72
740 762 1.016627 CGGCCCAACAGATATGTGTG 58.983 55.000 6.23 1.39 0.00 3.82
741 763 0.908910 TCGGCCCAACAGATATGTGT 59.091 50.000 0.00 0.00 0.00 3.72
742 764 1.586422 CTCGGCCCAACAGATATGTG 58.414 55.000 0.00 0.00 0.00 3.21
743 765 0.179045 GCTCGGCCCAACAGATATGT 60.179 55.000 0.00 0.00 0.00 2.29
744 766 0.886490 GGCTCGGCCCAACAGATATG 60.886 60.000 0.00 0.00 44.06 1.78
745 767 1.451936 GGCTCGGCCCAACAGATAT 59.548 57.895 0.00 0.00 44.06 1.63
746 768 2.908015 GGCTCGGCCCAACAGATA 59.092 61.111 0.00 0.00 44.06 1.98
756 778 1.582610 TTTCATCCGTTTGGCTCGGC 61.583 55.000 10.40 0.00 46.49 5.54
758 780 1.535462 ACTTTTCATCCGTTTGGCTCG 59.465 47.619 0.00 0.00 34.14 5.03
759 781 2.552315 TCACTTTTCATCCGTTTGGCTC 59.448 45.455 0.00 0.00 34.14 4.70
760 782 2.582052 TCACTTTTCATCCGTTTGGCT 58.418 42.857 0.00 0.00 34.14 4.75
761 783 3.049912 GTTCACTTTTCATCCGTTTGGC 58.950 45.455 0.00 0.00 34.14 4.52
762 784 4.300189 TGTTCACTTTTCATCCGTTTGG 57.700 40.909 0.00 0.00 0.00 3.28
763 785 5.276348 GCTTTGTTCACTTTTCATCCGTTTG 60.276 40.000 0.00 0.00 0.00 2.93
764 786 4.803613 GCTTTGTTCACTTTTCATCCGTTT 59.196 37.500 0.00 0.00 0.00 3.60
765 787 4.142271 TGCTTTGTTCACTTTTCATCCGTT 60.142 37.500 0.00 0.00 0.00 4.44
766 788 3.380004 TGCTTTGTTCACTTTTCATCCGT 59.620 39.130 0.00 0.00 0.00 4.69
767 789 3.963665 TGCTTTGTTCACTTTTCATCCG 58.036 40.909 0.00 0.00 0.00 4.18
768 790 5.176223 CACATGCTTTGTTCACTTTTCATCC 59.824 40.000 0.00 0.00 36.00 3.51
769 791 5.750067 ACACATGCTTTGTTCACTTTTCATC 59.250 36.000 0.00 0.00 36.00 2.92
770 792 5.663456 ACACATGCTTTGTTCACTTTTCAT 58.337 33.333 0.00 0.00 36.00 2.57
771 793 5.070770 ACACATGCTTTGTTCACTTTTCA 57.929 34.783 0.00 0.00 36.00 2.69
772 794 4.504097 GGACACATGCTTTGTTCACTTTTC 59.496 41.667 0.00 0.00 36.00 2.29
773 795 4.081752 TGGACACATGCTTTGTTCACTTTT 60.082 37.500 0.00 0.00 36.00 2.27
774 796 3.446873 TGGACACATGCTTTGTTCACTTT 59.553 39.130 0.00 0.00 36.00 2.66
775 797 3.023119 TGGACACATGCTTTGTTCACTT 58.977 40.909 0.00 0.00 36.00 3.16
776 798 2.653726 TGGACACATGCTTTGTTCACT 58.346 42.857 0.00 0.00 36.00 3.41
777 799 3.254166 AGATGGACACATGCTTTGTTCAC 59.746 43.478 0.00 0.00 35.23 3.18
778 800 3.489355 AGATGGACACATGCTTTGTTCA 58.511 40.909 0.00 0.00 36.88 3.18
779 801 4.937620 TCTAGATGGACACATGCTTTGTTC 59.062 41.667 0.00 0.00 37.47 3.18
780 802 4.697352 GTCTAGATGGACACATGCTTTGTT 59.303 41.667 0.00 0.00 37.47 2.83
781 803 4.256920 GTCTAGATGGACACATGCTTTGT 58.743 43.478 0.00 0.00 37.47 2.83
782 804 3.308053 CGTCTAGATGGACACATGCTTTG 59.692 47.826 3.83 0.00 37.47 2.77
783 805 3.195610 TCGTCTAGATGGACACATGCTTT 59.804 43.478 12.06 0.00 37.47 3.51
784 806 2.760650 TCGTCTAGATGGACACATGCTT 59.239 45.455 12.06 0.00 37.47 3.91
785 807 2.379005 TCGTCTAGATGGACACATGCT 58.621 47.619 12.06 0.00 37.47 3.79
786 808 2.871182 TCGTCTAGATGGACACATGC 57.129 50.000 12.06 0.00 37.47 4.06
787 809 6.313658 TCATTTTTCGTCTAGATGGACACATG 59.686 38.462 12.06 7.23 37.47 3.21
788 810 6.406370 TCATTTTTCGTCTAGATGGACACAT 58.594 36.000 12.06 0.00 40.85 3.21
789 811 5.789521 TCATTTTTCGTCTAGATGGACACA 58.210 37.500 12.06 0.00 36.12 3.72
790 812 6.147164 TGTTCATTTTTCGTCTAGATGGACAC 59.853 38.462 12.06 3.29 32.72 3.67
791 813 6.227522 TGTTCATTTTTCGTCTAGATGGACA 58.772 36.000 12.06 4.82 34.68 4.02
792 814 6.721571 TGTTCATTTTTCGTCTAGATGGAC 57.278 37.500 12.06 2.19 0.00 4.02
793 815 7.737972 TTTGTTCATTTTTCGTCTAGATGGA 57.262 32.000 12.06 0.00 0.00 3.41
794 816 8.795786 TTTTTGTTCATTTTTCGTCTAGATGG 57.204 30.769 12.06 0.00 0.00 3.51
795 817 9.450807 ACTTTTTGTTCATTTTTCGTCTAGATG 57.549 29.630 5.53 5.53 0.00 2.90
796 818 9.450807 CACTTTTTGTTCATTTTTCGTCTAGAT 57.549 29.630 0.00 0.00 0.00 1.98
797 819 7.431084 GCACTTTTTGTTCATTTTTCGTCTAGA 59.569 33.333 0.00 0.00 0.00 2.43
798 820 7.547119 GCACTTTTTGTTCATTTTTCGTCTAG 58.453 34.615 0.00 0.00 0.00 2.43
799 821 6.195613 CGCACTTTTTGTTCATTTTTCGTCTA 59.804 34.615 0.00 0.00 0.00 2.59
800 822 5.004345 CGCACTTTTTGTTCATTTTTCGTCT 59.996 36.000 0.00 0.00 0.00 4.18
801 823 5.180377 CGCACTTTTTGTTCATTTTTCGTC 58.820 37.500 0.00 0.00 0.00 4.20
802 824 4.623595 ACGCACTTTTTGTTCATTTTTCGT 59.376 33.333 0.00 0.00 0.00 3.85
803 825 5.124847 ACGCACTTTTTGTTCATTTTTCG 57.875 34.783 0.00 0.00 0.00 3.46
804 826 5.951494 GTGACGCACTTTTTGTTCATTTTTC 59.049 36.000 3.20 0.00 0.00 2.29
805 827 5.637387 AGTGACGCACTTTTTGTTCATTTTT 59.363 32.000 6.67 0.00 42.59 1.94
806 828 5.167845 AGTGACGCACTTTTTGTTCATTTT 58.832 33.333 6.67 0.00 42.59 1.82
807 829 4.743493 AGTGACGCACTTTTTGTTCATTT 58.257 34.783 6.67 0.00 42.59 2.32
808 830 4.370364 AGTGACGCACTTTTTGTTCATT 57.630 36.364 6.67 0.00 42.59 2.57
809 831 5.689383 ATAGTGACGCACTTTTTGTTCAT 57.311 34.783 15.81 1.22 42.59 2.57
810 832 5.178623 CCTATAGTGACGCACTTTTTGTTCA 59.821 40.000 15.81 0.00 42.59 3.18
811 833 5.618561 CCTATAGTGACGCACTTTTTGTTC 58.381 41.667 15.81 0.00 42.59 3.18
812 834 4.083484 GCCTATAGTGACGCACTTTTTGTT 60.083 41.667 15.81 0.00 42.59 2.83
813 835 3.435671 GCCTATAGTGACGCACTTTTTGT 59.564 43.478 15.81 3.56 42.59 2.83
814 836 3.181510 GGCCTATAGTGACGCACTTTTTG 60.182 47.826 15.81 7.19 42.59 2.44
815 837 3.007635 GGCCTATAGTGACGCACTTTTT 58.992 45.455 15.81 6.47 42.59 1.94
816 838 2.629051 GGCCTATAGTGACGCACTTTT 58.371 47.619 15.81 8.41 42.59 2.27
817 839 1.470979 CGGCCTATAGTGACGCACTTT 60.471 52.381 15.81 11.46 42.59 2.66
818 840 0.102481 CGGCCTATAGTGACGCACTT 59.898 55.000 15.81 8.20 42.59 3.16
820 842 1.299926 CCGGCCTATAGTGACGCAC 60.300 63.158 0.00 2.28 34.10 5.34
821 843 3.125607 CCGGCCTATAGTGACGCA 58.874 61.111 0.00 0.00 0.00 5.24
822 844 2.355956 GCCGGCCTATAGTGACGC 60.356 66.667 18.11 1.31 0.00 5.19
823 845 2.050351 CGCCGGCCTATAGTGACG 60.050 66.667 23.46 8.92 0.00 4.35
824 846 2.355956 GCGCCGGCCTATAGTGAC 60.356 66.667 23.46 0.00 0.00 3.67
825 847 3.973516 CGCGCCGGCCTATAGTGA 61.974 66.667 23.46 0.00 35.02 3.41
826 848 3.785189 AACGCGCCGGCCTATAGTG 62.785 63.158 23.46 15.67 35.02 2.74
827 849 3.534056 AACGCGCCGGCCTATAGT 61.534 61.111 23.46 10.98 35.02 2.12
828 850 3.036084 CAACGCGCCGGCCTATAG 61.036 66.667 23.46 7.50 35.02 1.31
829 851 4.595538 CCAACGCGCCGGCCTATA 62.596 66.667 23.46 0.00 35.02 1.31
837 859 4.090057 GAGCAACTCCAACGCGCC 62.090 66.667 5.73 0.00 0.00 6.53
838 860 1.289109 TAAGAGCAACTCCAACGCGC 61.289 55.000 5.73 0.00 0.00 6.86
839 861 1.359848 ATAAGAGCAACTCCAACGCG 58.640 50.000 3.53 3.53 0.00 6.01
840 862 3.831715 AAATAAGAGCAACTCCAACGC 57.168 42.857 0.00 0.00 0.00 4.84
879 902 4.277672 AGTGATGGAGCAATAATGACATGC 59.722 41.667 0.00 0.00 40.34 4.06
897 920 6.761099 ATTGTCTCGTAGTAGTTCAGTGAT 57.239 37.500 0.00 0.00 0.00 3.06
958 981 2.541556 GGAAGGATAGACTTGTGACGC 58.458 52.381 0.00 0.00 0.00 5.19
989 1012 2.894257 TTCGCCATGGACCTGCTGT 61.894 57.895 18.40 0.00 0.00 4.40
1392 1457 2.357327 CGGAGGTGAACATGACGTAA 57.643 50.000 0.00 0.00 0.00 3.18
1898 2023 2.516888 CCCACGACCCACAGGAACT 61.517 63.158 0.00 0.00 43.88 3.01
1920 2045 0.032952 CCTGGTCGTCGTTGAAAGGA 59.967 55.000 0.00 0.00 0.00 3.36
2581 2781 1.918293 AGGGATCTCCAACCACGCA 60.918 57.895 0.00 0.00 38.24 5.24
2596 2798 7.290110 TCTGAGACATATATACACAACAGGG 57.710 40.000 0.00 0.00 0.00 4.45
2668 2872 6.565247 CGCTAACTTAATCGTTGTTGGAGTTT 60.565 38.462 0.00 0.00 0.00 2.66
2691 2895 8.188139 TCCTCCTAACATTTGAAAAATATTCGC 58.812 33.333 0.00 0.00 0.00 4.70
2698 2902 6.207417 CAGCTCTCCTCCTAACATTTGAAAAA 59.793 38.462 0.00 0.00 0.00 1.94
2792 2997 3.292460 TCCAACCGTTTCCAGACATTTT 58.708 40.909 0.00 0.00 0.00 1.82
2795 3000 2.649531 TTCCAACCGTTTCCAGACAT 57.350 45.000 0.00 0.00 0.00 3.06
2796 3001 2.421751 TTTCCAACCGTTTCCAGACA 57.578 45.000 0.00 0.00 0.00 3.41
2797 3002 4.941873 AGATATTTCCAACCGTTTCCAGAC 59.058 41.667 0.00 0.00 0.00 3.51
2798 3003 5.174037 AGATATTTCCAACCGTTTCCAGA 57.826 39.130 0.00 0.00 0.00 3.86
2800 3005 6.765989 CAGATAGATATTTCCAACCGTTTCCA 59.234 38.462 0.00 0.00 0.00 3.53
2801 3006 6.766467 ACAGATAGATATTTCCAACCGTTTCC 59.234 38.462 0.00 0.00 0.00 3.13
2802 3007 7.787725 ACAGATAGATATTTCCAACCGTTTC 57.212 36.000 0.00 0.00 0.00 2.78
2803 3008 9.847224 ATAACAGATAGATATTTCCAACCGTTT 57.153 29.630 0.00 0.00 0.00 3.60
2936 3228 0.759436 ACGCCCCATAGATCGTTCCT 60.759 55.000 0.00 0.00 0.00 3.36
2956 3248 1.410004 ATATCCGGGCTTCAGAACGA 58.590 50.000 0.00 0.00 0.00 3.85
2965 3257 5.531287 GTGTCATTTCTTTAATATCCGGGCT 59.469 40.000 0.00 0.00 0.00 5.19
2974 3266 6.974622 GGATTGCGATGTGTCATTTCTTTAAT 59.025 34.615 0.00 0.00 0.00 1.40
2976 3268 5.163663 GGGATTGCGATGTGTCATTTCTTTA 60.164 40.000 0.00 0.00 0.00 1.85
2983 3275 3.405831 CATAGGGATTGCGATGTGTCAT 58.594 45.455 0.00 0.00 0.00 3.06
3040 3338 1.464997 GGGAGAGAATGTTTGTGTCGC 59.535 52.381 0.00 0.00 0.00 5.19
3156 3454 4.769688 TGTAGGGACAATTGACATGCTAG 58.230 43.478 13.59 0.00 30.68 3.42
3170 3468 2.292267 CAAGATGCACCATGTAGGGAC 58.708 52.381 0.00 0.00 43.89 4.46
3193 3491 0.471617 AATCTCATCTCCAAGGCCGG 59.528 55.000 0.00 0.00 0.00 6.13
3194 3492 1.139654 TGAATCTCATCTCCAAGGCCG 59.860 52.381 0.00 0.00 0.00 6.13
3217 3515 2.454336 TGAGATGGTGTACGGGAGAT 57.546 50.000 0.00 0.00 0.00 2.75
3224 3522 3.307242 GTCATTCGCTTGAGATGGTGTAC 59.693 47.826 0.00 0.00 0.00 2.90
3293 3591 8.340618 ACACAAAAGTTGTCATATATGCTTCT 57.659 30.769 7.92 1.61 43.23 2.85
3301 3599 7.174772 TGACATGCTACACAAAAGTTGTCATAT 59.825 33.333 0.00 0.00 43.23 1.78
3331 3629 0.035152 TGCCATGCTGTTGTAGGGAG 60.035 55.000 0.00 0.00 31.35 4.30
3332 3630 0.403655 TTGCCATGCTGTTGTAGGGA 59.596 50.000 0.00 0.00 31.35 4.20
3333 3631 1.477553 ATTGCCATGCTGTTGTAGGG 58.522 50.000 0.00 0.00 32.91 3.53
3334 3632 3.194116 AGAAATTGCCATGCTGTTGTAGG 59.806 43.478 0.00 0.00 0.00 3.18
3335 3633 4.445452 AGAAATTGCCATGCTGTTGTAG 57.555 40.909 0.00 0.00 0.00 2.74
3336 3634 5.973899 TTAGAAATTGCCATGCTGTTGTA 57.026 34.783 0.00 0.00 0.00 2.41
3337 3635 4.870123 TTAGAAATTGCCATGCTGTTGT 57.130 36.364 0.00 0.00 0.00 3.32
3338 3636 4.989797 TGTTTAGAAATTGCCATGCTGTTG 59.010 37.500 0.00 0.00 0.00 3.33
3339 3637 5.212532 TGTTTAGAAATTGCCATGCTGTT 57.787 34.783 0.00 0.00 0.00 3.16
3340 3638 4.870123 TGTTTAGAAATTGCCATGCTGT 57.130 36.364 0.00 0.00 0.00 4.40
3341 3639 5.062934 CACATGTTTAGAAATTGCCATGCTG 59.937 40.000 0.00 0.00 34.49 4.41
3342 3640 5.172934 CACATGTTTAGAAATTGCCATGCT 58.827 37.500 0.00 0.00 34.49 3.79
3343 3641 4.330620 CCACATGTTTAGAAATTGCCATGC 59.669 41.667 0.00 0.00 34.49 4.06
3344 3642 4.871557 CCCACATGTTTAGAAATTGCCATG 59.128 41.667 0.00 0.00 36.60 3.66
3345 3643 4.623647 GCCCACATGTTTAGAAATTGCCAT 60.624 41.667 0.00 0.00 0.00 4.40
3346 3644 3.306641 GCCCACATGTTTAGAAATTGCCA 60.307 43.478 0.00 0.00 0.00 4.92
3347 3645 3.261580 GCCCACATGTTTAGAAATTGCC 58.738 45.455 0.00 0.00 0.00 4.52
3348 3646 3.924144 TGCCCACATGTTTAGAAATTGC 58.076 40.909 0.00 0.00 0.00 3.56
3349 3647 5.540911 AGTTGCCCACATGTTTAGAAATTG 58.459 37.500 0.00 0.00 0.00 2.32
3350 3648 5.806654 AGTTGCCCACATGTTTAGAAATT 57.193 34.783 0.00 0.00 0.00 1.82
3351 3649 5.279456 GGAAGTTGCCCACATGTTTAGAAAT 60.279 40.000 0.00 0.00 0.00 2.17
3352 3650 4.038642 GGAAGTTGCCCACATGTTTAGAAA 59.961 41.667 0.00 0.00 0.00 2.52
3353 3651 3.572255 GGAAGTTGCCCACATGTTTAGAA 59.428 43.478 0.00 0.00 0.00 2.10
3368 3666 2.826128 GGCTAAGAAAAGGGGGAAGTTG 59.174 50.000 0.00 0.00 0.00 3.16
3374 3672 0.684479 GGCAGGCTAAGAAAAGGGGG 60.684 60.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.