Multiple sequence alignment - TraesCS1A01G347100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G347100 chr1A 100.000 3428 0 0 1 3428 533252006 533255433 0.000000e+00 6331.0
1 TraesCS1A01G347100 chr1A 75.904 1382 273 48 1046 2404 533258470 533257126 0.000000e+00 652.0
2 TraesCS1A01G347100 chr1A 95.402 87 4 0 2486 2572 67384522 67384436 4.610000e-29 139.0
3 TraesCS1A01G347100 chr1A 93.103 87 6 0 2486 2572 97339843 97339757 9.990000e-26 128.0
4 TraesCS1A01G347100 chr1A 93.103 87 6 0 2486 2572 97380577 97380491 9.990000e-26 128.0
5 TraesCS1A01G347100 chr1D 94.127 2537 109 5 914 3426 436081978 436084498 0.000000e+00 3823.0
6 TraesCS1A01G347100 chr1D 75.793 1388 283 42 1046 2411 436087188 436085832 0.000000e+00 652.0
7 TraesCS1A01G347100 chr1D 73.894 1379 301 43 1046 2405 436098604 436097266 6.610000e-137 497.0
8 TraesCS1A01G347100 chr1D 92.857 70 4 1 381 450 436081888 436081956 2.180000e-17 100.0
9 TraesCS1A01G347100 chr1D 88.710 62 5 2 2099 2159 42763534 42763594 1.320000e-09 75.0
10 TraesCS1A01G347100 chr1B 92.955 2484 108 16 971 3426 589887778 589890222 0.000000e+00 3555.0
11 TraesCS1A01G347100 chr1B 92.067 479 35 3 442 919 156181168 156181644 0.000000e+00 671.0
12 TraesCS1A01G347100 chr1B 75.648 1388 285 40 1046 2411 589898454 589897098 2.880000e-180 641.0
13 TraesCS1A01G347100 chr1B 86.893 206 24 3 129 332 73128037 73127833 9.570000e-56 228.0
14 TraesCS1A01G347100 chr1B 91.304 92 7 1 355 446 589887637 589887727 1.290000e-24 124.0
15 TraesCS1A01G347100 chr2B 86.584 1446 180 12 979 2419 728270059 728268623 0.000000e+00 1583.0
16 TraesCS1A01G347100 chr2B 86.455 1447 180 13 979 2419 728197760 728196324 0.000000e+00 1572.0
17 TraesCS1A01G347100 chr2B 92.291 467 32 3 450 913 710832677 710833142 0.000000e+00 660.0
18 TraesCS1A01G347100 chr2D 85.565 1531 198 19 979 2496 598898663 598897143 0.000000e+00 1581.0
19 TraesCS1A01G347100 chr2D 84.350 377 53 5 2069 2443 598892747 598892375 6.990000e-97 364.0
20 TraesCS1A01G347100 chr2A 86.310 1439 181 14 979 2410 733132798 733131369 0.000000e+00 1552.0
21 TraesCS1A01G347100 chr3B 93.376 468 28 3 449 914 690854221 690854687 0.000000e+00 689.0
22 TraesCS1A01G347100 chr7D 92.553 470 30 5 448 913 219836549 219837017 0.000000e+00 669.0
23 TraesCS1A01G347100 chr7B 92.161 472 33 4 446 914 11929749 11930219 0.000000e+00 664.0
24 TraesCS1A01G347100 chr7B 92.489 466 32 3 449 912 130269066 130268602 0.000000e+00 664.0
25 TraesCS1A01G347100 chr5A 92.178 473 32 5 444 913 116569232 116569702 0.000000e+00 664.0
26 TraesCS1A01G347100 chr5A 88.038 209 21 3 125 331 534574380 534574174 9.500000e-61 244.0
27 TraesCS1A01G347100 chr5A 87.793 213 18 5 125 331 456461593 456461803 3.420000e-60 243.0
28 TraesCS1A01G347100 chr5A 87.143 210 19 6 121 324 338233081 338233288 7.400000e-57 231.0
29 TraesCS1A01G347100 chr5A 94.253 87 5 0 2486 2572 500296324 500296410 2.150000e-27 134.0
30 TraesCS1A01G347100 chr6A 92.275 466 32 4 450 912 237919289 237919753 0.000000e+00 658.0
31 TraesCS1A01G347100 chr7A 92.094 468 31 6 450 914 301639173 301639637 0.000000e+00 654.0
32 TraesCS1A01G347100 chr7A 87.037 216 17 7 125 332 15130820 15131032 2.060000e-57 233.0
33 TraesCS1A01G347100 chr7A 86.636 217 19 6 123 331 58334176 58333962 7.400000e-57 231.0
34 TraesCS1A01G347100 chr3D 73.171 1066 243 37 1313 2361 387710061 387709022 9.110000e-91 344.0
35 TraesCS1A01G347100 chr3D 75.413 545 121 12 1796 2329 387354646 387354104 5.680000e-63 252.0
36 TraesCS1A01G347100 chr3D 88.462 208 21 3 125 331 2692464 2692669 7.350000e-62 248.0
37 TraesCS1A01G347100 chr4D 88.152 211 20 3 125 331 353763493 353763702 2.640000e-61 246.0
38 TraesCS1A01G347100 chr4D 81.651 109 20 0 2047 2155 509838037 509837929 1.310000e-14 91.6
39 TraesCS1A01G347100 chrUn 86.730 211 23 2 125 331 101229950 101229741 2.660000e-56 230.0
40 TraesCS1A01G347100 chr4A 95.402 87 4 0 2486 2572 76260332 76260246 4.610000e-29 139.0
41 TraesCS1A01G347100 chr3A 93.103 87 6 0 2486 2572 234288889 234288975 9.990000e-26 128.0
42 TraesCS1A01G347100 chr5D 86.486 111 13 2 2054 2163 366780889 366780780 1.670000e-23 121.0
43 TraesCS1A01G347100 chr5D 80.392 102 13 5 1794 1892 513721486 513721389 1.710000e-08 71.3
44 TraesCS1A01G347100 chr4B 88.406 69 8 0 2087 2155 656892734 656892802 2.190000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G347100 chr1A 533252006 533255433 3427 False 6331.0 6331 100.0000 1 3428 1 chr1A.!!$F1 3427
1 TraesCS1A01G347100 chr1A 533257126 533258470 1344 True 652.0 652 75.9040 1046 2404 1 chr1A.!!$R4 1358
2 TraesCS1A01G347100 chr1D 436081888 436084498 2610 False 1961.5 3823 93.4920 381 3426 2 chr1D.!!$F2 3045
3 TraesCS1A01G347100 chr1D 436085832 436087188 1356 True 652.0 652 75.7930 1046 2411 1 chr1D.!!$R1 1365
4 TraesCS1A01G347100 chr1D 436097266 436098604 1338 True 497.0 497 73.8940 1046 2405 1 chr1D.!!$R2 1359
5 TraesCS1A01G347100 chr1B 589887637 589890222 2585 False 1839.5 3555 92.1295 355 3426 2 chr1B.!!$F2 3071
6 TraesCS1A01G347100 chr1B 589897098 589898454 1356 True 641.0 641 75.6480 1046 2411 1 chr1B.!!$R2 1365
7 TraesCS1A01G347100 chr2B 728268623 728270059 1436 True 1583.0 1583 86.5840 979 2419 1 chr2B.!!$R2 1440
8 TraesCS1A01G347100 chr2B 728196324 728197760 1436 True 1572.0 1572 86.4550 979 2419 1 chr2B.!!$R1 1440
9 TraesCS1A01G347100 chr2D 598897143 598898663 1520 True 1581.0 1581 85.5650 979 2496 1 chr2D.!!$R2 1517
10 TraesCS1A01G347100 chr2A 733131369 733132798 1429 True 1552.0 1552 86.3100 979 2410 1 chr2A.!!$R1 1431
11 TraesCS1A01G347100 chr3D 387709022 387710061 1039 True 344.0 344 73.1710 1313 2361 1 chr3D.!!$R2 1048
12 TraesCS1A01G347100 chr3D 387354104 387354646 542 True 252.0 252 75.4130 1796 2329 1 chr3D.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.034767 CATGAGGAGGAAGCAGGCAA 60.035 55.0 0.00 0.0 0.00 4.52 F
469 470 0.106719 ATACCTGACCAAATGGGCCG 60.107 55.0 2.09 0.0 44.80 6.13 F
730 731 0.251474 AATATGCGGCCCATCATGCT 60.251 50.0 9.67 0.0 35.34 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2315 0.393537 CATGACCAGCCTCACCTTCC 60.394 60.000 0.00 0.00 0.00 3.46 R
2389 2431 0.667487 TGCTTCAAGAACTCGGCGAG 60.667 55.000 33.42 33.42 35.52 5.03 R
2602 2651 2.787994 AGCTTCAGTGTGGAATTCAGG 58.212 47.619 7.93 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.305441 GAAACCCTAACAATATTGGTTGTTTG 57.695 34.615 22.53 11.38 46.96 2.93
29 30 4.329462 AACAATATTGGTTGTTTGGCGT 57.671 36.364 19.37 0.00 46.96 5.68
30 31 4.329462 ACAATATTGGTTGTTTGGCGTT 57.671 36.364 19.37 0.00 39.15 4.84
31 32 4.054671 ACAATATTGGTTGTTTGGCGTTG 58.945 39.130 19.37 0.00 39.15 4.10
32 33 4.054671 CAATATTGGTTGTTTGGCGTTGT 58.945 39.130 7.62 0.00 0.00 3.32
33 34 2.217429 ATTGGTTGTTTGGCGTTGTC 57.783 45.000 0.00 0.00 0.00 3.18
34 35 1.178276 TTGGTTGTTTGGCGTTGTCT 58.822 45.000 0.00 0.00 0.00 3.41
35 36 2.039818 TGGTTGTTTGGCGTTGTCTA 57.960 45.000 0.00 0.00 0.00 2.59
36 37 1.671845 TGGTTGTTTGGCGTTGTCTAC 59.328 47.619 0.00 0.00 0.00 2.59
37 38 1.002142 GGTTGTTTGGCGTTGTCTACC 60.002 52.381 0.00 0.00 0.00 3.18
38 39 1.002142 GTTGTTTGGCGTTGTCTACCC 60.002 52.381 0.00 0.00 0.00 3.69
39 40 0.535553 TGTTTGGCGTTGTCTACCCC 60.536 55.000 0.00 0.00 0.00 4.95
40 41 0.535553 GTTTGGCGTTGTCTACCCCA 60.536 55.000 0.00 0.00 32.83 4.96
41 42 0.402504 TTTGGCGTTGTCTACCCCAT 59.597 50.000 0.00 0.00 34.71 4.00
42 43 1.277579 TTGGCGTTGTCTACCCCATA 58.722 50.000 0.00 0.00 34.71 2.74
43 44 0.828022 TGGCGTTGTCTACCCCATAG 59.172 55.000 0.00 0.00 29.64 2.23
44 45 1.117150 GGCGTTGTCTACCCCATAGA 58.883 55.000 0.00 0.00 37.60 1.98
50 51 3.939710 TCTACCCCATAGACGCCTT 57.060 52.632 0.00 0.00 34.80 4.35
52 53 2.590821 TCTACCCCATAGACGCCTTAC 58.409 52.381 0.00 0.00 34.80 2.34
53 54 2.176364 TCTACCCCATAGACGCCTTACT 59.824 50.000 0.00 0.00 34.80 2.24
54 55 1.875488 ACCCCATAGACGCCTTACTT 58.125 50.000 0.00 0.00 0.00 2.24
55 56 2.193993 ACCCCATAGACGCCTTACTTT 58.806 47.619 0.00 0.00 0.00 2.66
56 57 2.093128 ACCCCATAGACGCCTTACTTTG 60.093 50.000 0.00 0.00 0.00 2.77
57 58 2.093128 CCCCATAGACGCCTTACTTTGT 60.093 50.000 0.00 0.00 0.00 2.83
58 59 3.606687 CCCATAGACGCCTTACTTTGTT 58.393 45.455 0.00 0.00 0.00 2.83
59 60 4.007659 CCCATAGACGCCTTACTTTGTTT 58.992 43.478 0.00 0.00 0.00 2.83
60 61 4.457949 CCCATAGACGCCTTACTTTGTTTT 59.542 41.667 0.00 0.00 0.00 2.43
61 62 5.048294 CCCATAGACGCCTTACTTTGTTTTT 60.048 40.000 0.00 0.00 0.00 1.94
62 63 6.149807 CCCATAGACGCCTTACTTTGTTTTTA 59.850 38.462 0.00 0.00 0.00 1.52
63 64 7.241376 CCATAGACGCCTTACTTTGTTTTTAG 58.759 38.462 0.00 0.00 0.00 1.85
64 65 5.684550 AGACGCCTTACTTTGTTTTTAGG 57.315 39.130 0.00 0.00 0.00 2.69
65 66 5.370679 AGACGCCTTACTTTGTTTTTAGGA 58.629 37.500 0.00 0.00 0.00 2.94
66 67 5.469084 AGACGCCTTACTTTGTTTTTAGGAG 59.531 40.000 0.00 0.00 0.00 3.69
67 68 4.023450 ACGCCTTACTTTGTTTTTAGGAGC 60.023 41.667 0.00 0.00 0.00 4.70
68 69 4.023536 CGCCTTACTTTGTTTTTAGGAGCA 60.024 41.667 0.00 0.00 0.00 4.26
69 70 5.335661 CGCCTTACTTTGTTTTTAGGAGCAT 60.336 40.000 0.00 0.00 0.00 3.79
70 71 6.128117 CGCCTTACTTTGTTTTTAGGAGCATA 60.128 38.462 0.00 0.00 0.00 3.14
71 72 7.415206 CGCCTTACTTTGTTTTTAGGAGCATAT 60.415 37.037 0.00 0.00 0.00 1.78
72 73 7.702348 GCCTTACTTTGTTTTTAGGAGCATATG 59.298 37.037 0.00 0.00 0.00 1.78
73 74 7.702348 CCTTACTTTGTTTTTAGGAGCATATGC 59.298 37.037 20.36 20.36 42.49 3.14
74 75 5.965922 ACTTTGTTTTTAGGAGCATATGCC 58.034 37.500 23.96 14.86 43.38 4.40
75 76 5.716703 ACTTTGTTTTTAGGAGCATATGCCT 59.283 36.000 23.96 16.66 43.38 4.75
76 77 6.211384 ACTTTGTTTTTAGGAGCATATGCCTT 59.789 34.615 23.96 13.87 43.38 4.35
77 78 7.396055 ACTTTGTTTTTAGGAGCATATGCCTTA 59.604 33.333 23.96 12.92 43.38 2.69
78 79 6.693315 TGTTTTTAGGAGCATATGCCTTAC 57.307 37.500 23.96 7.59 43.38 2.34
79 80 6.423182 TGTTTTTAGGAGCATATGCCTTACT 58.577 36.000 23.96 14.84 43.38 2.24
80 81 6.889722 TGTTTTTAGGAGCATATGCCTTACTT 59.110 34.615 23.96 11.77 43.38 2.24
81 82 8.050325 TGTTTTTAGGAGCATATGCCTTACTTA 58.950 33.333 23.96 10.87 43.38 2.24
82 83 8.560374 GTTTTTAGGAGCATATGCCTTACTTAG 58.440 37.037 23.96 0.00 43.38 2.18
91 92 2.196319 CCTTACTTAGGCGTCCGGT 58.804 57.895 0.00 0.00 37.17 5.28
92 93 0.533951 CCTTACTTAGGCGTCCGGTT 59.466 55.000 0.00 0.00 37.17 4.44
93 94 1.636988 CTTACTTAGGCGTCCGGTTG 58.363 55.000 0.00 0.00 0.00 3.77
94 95 0.968405 TTACTTAGGCGTCCGGTTGT 59.032 50.000 0.00 0.00 0.00 3.32
95 96 1.832883 TACTTAGGCGTCCGGTTGTA 58.167 50.000 0.00 0.00 0.00 2.41
96 97 0.968405 ACTTAGGCGTCCGGTTGTAA 59.032 50.000 0.00 0.00 0.00 2.41
97 98 1.337167 ACTTAGGCGTCCGGTTGTAAC 60.337 52.381 0.00 0.00 0.00 2.50
98 99 0.968405 TTAGGCGTCCGGTTGTAACT 59.032 50.000 0.00 0.00 0.00 2.24
99 100 0.968405 TAGGCGTCCGGTTGTAACTT 59.032 50.000 0.00 0.00 0.00 2.66
100 101 0.320160 AGGCGTCCGGTTGTAACTTC 60.320 55.000 0.00 0.00 0.00 3.01
101 102 0.600782 GGCGTCCGGTTGTAACTTCA 60.601 55.000 0.00 0.00 0.00 3.02
102 103 1.219646 GCGTCCGGTTGTAACTTCAA 58.780 50.000 0.00 0.00 0.00 2.69
103 104 1.598601 GCGTCCGGTTGTAACTTCAAA 59.401 47.619 0.00 0.00 0.00 2.69
104 105 2.031930 GCGTCCGGTTGTAACTTCAAAA 59.968 45.455 0.00 0.00 0.00 2.44
105 106 3.610495 CGTCCGGTTGTAACTTCAAAAC 58.390 45.455 0.00 0.00 0.00 2.43
106 107 3.310501 CGTCCGGTTGTAACTTCAAAACT 59.689 43.478 0.00 0.00 0.00 2.66
107 108 4.201841 CGTCCGGTTGTAACTTCAAAACTT 60.202 41.667 0.00 0.00 0.00 2.66
108 109 5.006552 CGTCCGGTTGTAACTTCAAAACTTA 59.993 40.000 0.00 0.00 0.00 2.24
109 110 6.293027 CGTCCGGTTGTAACTTCAAAACTTAT 60.293 38.462 0.00 0.00 0.00 1.73
110 111 7.420002 GTCCGGTTGTAACTTCAAAACTTATT 58.580 34.615 0.00 0.00 0.00 1.40
111 112 7.588854 GTCCGGTTGTAACTTCAAAACTTATTC 59.411 37.037 0.00 0.00 0.00 1.75
112 113 6.859508 CCGGTTGTAACTTCAAAACTTATTCC 59.140 38.462 0.00 0.00 0.00 3.01
113 114 7.419204 CGGTTGTAACTTCAAAACTTATTCCA 58.581 34.615 0.00 0.00 0.00 3.53
114 115 8.079809 CGGTTGTAACTTCAAAACTTATTCCAT 58.920 33.333 0.00 0.00 0.00 3.41
115 116 9.758651 GGTTGTAACTTCAAAACTTATTCCATT 57.241 29.630 0.00 0.00 0.00 3.16
121 122 7.602753 ACTTCAAAACTTATTCCATTGTAGCC 58.397 34.615 0.00 0.00 0.00 3.93
122 123 7.451566 ACTTCAAAACTTATTCCATTGTAGCCT 59.548 33.333 0.00 0.00 0.00 4.58
123 124 8.871629 TTCAAAACTTATTCCATTGTAGCCTA 57.128 30.769 0.00 0.00 0.00 3.93
124 125 8.506168 TCAAAACTTATTCCATTGTAGCCTAG 57.494 34.615 0.00 0.00 0.00 3.02
125 126 7.556275 TCAAAACTTATTCCATTGTAGCCTAGG 59.444 37.037 3.67 3.67 0.00 3.02
126 127 6.824958 AACTTATTCCATTGTAGCCTAGGA 57.175 37.500 14.75 0.00 0.00 2.94
127 128 6.176014 ACTTATTCCATTGTAGCCTAGGAC 57.824 41.667 14.75 2.83 0.00 3.85
128 129 3.753294 ATTCCATTGTAGCCTAGGACG 57.247 47.619 14.75 0.00 0.00 4.79
129 130 2.447408 TCCATTGTAGCCTAGGACGA 57.553 50.000 14.75 2.55 0.00 4.20
130 131 2.307768 TCCATTGTAGCCTAGGACGAG 58.692 52.381 14.75 0.00 0.00 4.18
131 132 2.092049 TCCATTGTAGCCTAGGACGAGA 60.092 50.000 14.75 0.00 0.00 4.04
132 133 2.034812 CCATTGTAGCCTAGGACGAGAC 59.965 54.545 14.75 2.50 0.00 3.36
133 134 2.803030 TTGTAGCCTAGGACGAGACT 57.197 50.000 14.75 0.69 0.00 3.24
134 135 2.803030 TGTAGCCTAGGACGAGACTT 57.197 50.000 14.75 0.00 0.00 3.01
135 136 2.366533 TGTAGCCTAGGACGAGACTTG 58.633 52.381 14.75 0.00 0.00 3.16
136 137 1.065851 GTAGCCTAGGACGAGACTTGC 59.934 57.143 14.75 0.00 0.00 4.01
137 138 1.142097 GCCTAGGACGAGACTTGCC 59.858 63.158 14.75 0.00 0.00 4.52
138 139 1.324005 GCCTAGGACGAGACTTGCCT 61.324 60.000 14.75 9.72 34.56 4.75
139 140 0.457851 CCTAGGACGAGACTTGCCTG 59.542 60.000 1.05 6.08 32.04 4.85
140 141 0.179124 CTAGGACGAGACTTGCCTGC 60.179 60.000 13.19 0.00 32.04 4.85
141 142 0.612174 TAGGACGAGACTTGCCTGCT 60.612 55.000 13.19 0.00 32.04 4.24
142 143 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
143 144 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
144 145 1.882989 GACGAGACTTGCCTGCTCCT 61.883 60.000 0.00 0.00 0.00 3.69
145 146 1.153667 CGAGACTTGCCTGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
146 147 1.220477 GAGACTTGCCTGCTCCTCC 59.780 63.158 0.00 0.00 0.00 4.30
147 148 2.250741 GAGACTTGCCTGCTCCTCCC 62.251 65.000 0.00 0.00 0.00 4.30
148 149 3.672295 GACTTGCCTGCTCCTCCCG 62.672 68.421 0.00 0.00 0.00 5.14
166 167 4.508128 CGTGCGCCCATCCGTACT 62.508 66.667 4.18 0.00 40.83 2.73
167 168 2.585247 GTGCGCCCATCCGTACTC 60.585 66.667 4.18 0.00 40.05 2.59
168 169 3.845259 TGCGCCCATCCGTACTCC 61.845 66.667 4.18 0.00 0.00 3.85
169 170 4.603946 GCGCCCATCCGTACTCCC 62.604 72.222 0.00 0.00 0.00 4.30
170 171 4.280494 CGCCCATCCGTACTCCCG 62.280 72.222 0.00 0.00 0.00 5.14
171 172 4.603946 GCCCATCCGTACTCCCGC 62.604 72.222 0.00 0.00 0.00 6.13
172 173 4.280494 CCCATCCGTACTCCCGCG 62.280 72.222 0.00 0.00 0.00 6.46
173 174 3.524606 CCATCCGTACTCCCGCGT 61.525 66.667 4.92 0.00 0.00 6.01
174 175 2.188829 CCATCCGTACTCCCGCGTA 61.189 63.158 4.92 0.00 0.00 4.42
175 176 1.521450 CCATCCGTACTCCCGCGTAT 61.521 60.000 4.92 0.00 0.00 3.06
176 177 0.386858 CATCCGTACTCCCGCGTATG 60.387 60.000 4.92 0.00 0.00 2.39
177 178 0.820891 ATCCGTACTCCCGCGTATGT 60.821 55.000 4.92 2.66 0.00 2.29
178 179 1.298863 CCGTACTCCCGCGTATGTG 60.299 63.158 4.92 0.00 0.00 3.21
179 180 1.298863 CGTACTCCCGCGTATGTGG 60.299 63.158 4.92 7.62 45.78 4.17
180 181 1.811860 GTACTCCCGCGTATGTGGT 59.188 57.895 13.46 0.00 44.67 4.16
181 182 0.174162 GTACTCCCGCGTATGTGGTT 59.826 55.000 13.46 0.36 44.67 3.67
182 183 0.896923 TACTCCCGCGTATGTGGTTT 59.103 50.000 13.46 0.02 44.67 3.27
183 184 0.672401 ACTCCCGCGTATGTGGTTTG 60.672 55.000 13.46 5.62 44.67 2.93
184 185 0.390603 CTCCCGCGTATGTGGTTTGA 60.391 55.000 13.46 3.16 44.67 2.69
185 186 0.250793 TCCCGCGTATGTGGTTTGAT 59.749 50.000 13.46 0.00 44.67 2.57
186 187 1.091537 CCCGCGTATGTGGTTTGATT 58.908 50.000 13.46 0.00 44.67 2.57
187 188 1.470890 CCCGCGTATGTGGTTTGATTT 59.529 47.619 13.46 0.00 44.67 2.17
188 189 2.514902 CCGCGTATGTGGTTTGATTTG 58.485 47.619 4.92 0.00 41.05 2.32
189 190 2.160615 CCGCGTATGTGGTTTGATTTGA 59.839 45.455 4.92 0.00 41.05 2.69
190 191 3.181501 CCGCGTATGTGGTTTGATTTGAT 60.182 43.478 4.92 0.00 41.05 2.57
191 192 4.411327 CGCGTATGTGGTTTGATTTGATT 58.589 39.130 0.00 0.00 0.00 2.57
192 193 4.262743 CGCGTATGTGGTTTGATTTGATTG 59.737 41.667 0.00 0.00 0.00 2.67
193 194 4.562394 GCGTATGTGGTTTGATTTGATTGG 59.438 41.667 0.00 0.00 0.00 3.16
194 195 5.621104 GCGTATGTGGTTTGATTTGATTGGA 60.621 40.000 0.00 0.00 0.00 3.53
195 196 6.385843 CGTATGTGGTTTGATTTGATTGGAA 58.614 36.000 0.00 0.00 0.00 3.53
196 197 6.307800 CGTATGTGGTTTGATTTGATTGGAAC 59.692 38.462 0.00 0.00 0.00 3.62
197 198 5.604758 TGTGGTTTGATTTGATTGGAACA 57.395 34.783 0.00 0.00 0.00 3.18
211 212 1.896465 TGGAACAAAATAAAGGCCCGG 59.104 47.619 0.00 0.00 31.92 5.73
212 213 1.404986 GGAACAAAATAAAGGCCCGGC 60.405 52.381 0.00 0.00 0.00 6.13
225 226 3.799672 CCGGCCCCATCCCGTTAA 61.800 66.667 0.00 0.00 44.13 2.01
226 227 2.272797 CGGCCCCATCCCGTTAAA 59.727 61.111 0.00 0.00 40.84 1.52
227 228 1.378778 CGGCCCCATCCCGTTAAAA 60.379 57.895 0.00 0.00 40.84 1.52
228 229 0.753848 CGGCCCCATCCCGTTAAAAT 60.754 55.000 0.00 0.00 40.84 1.82
229 230 1.037493 GGCCCCATCCCGTTAAAATC 58.963 55.000 0.00 0.00 0.00 2.17
230 231 1.686741 GGCCCCATCCCGTTAAAATCA 60.687 52.381 0.00 0.00 0.00 2.57
231 232 1.681264 GCCCCATCCCGTTAAAATCAG 59.319 52.381 0.00 0.00 0.00 2.90
232 233 2.306847 CCCCATCCCGTTAAAATCAGG 58.693 52.381 0.00 0.00 0.00 3.86
233 234 2.092103 CCCCATCCCGTTAAAATCAGGA 60.092 50.000 0.00 0.00 0.00 3.86
234 235 3.626222 CCCCATCCCGTTAAAATCAGGAA 60.626 47.826 0.00 0.00 0.00 3.36
235 236 4.020543 CCCATCCCGTTAAAATCAGGAAA 58.979 43.478 0.00 0.00 0.00 3.13
236 237 4.649218 CCCATCCCGTTAAAATCAGGAAAT 59.351 41.667 0.00 0.00 0.00 2.17
237 238 5.451798 CCCATCCCGTTAAAATCAGGAAATG 60.452 44.000 0.00 0.00 0.00 2.32
238 239 5.359576 CCATCCCGTTAAAATCAGGAAATGA 59.640 40.000 0.00 0.00 43.70 2.57
253 254 8.567198 TCAGGAAATGATTAGATTAGGAAGGA 57.433 34.615 0.00 0.00 31.12 3.36
254 255 9.003145 TCAGGAAATGATTAGATTAGGAAGGAA 57.997 33.333 0.00 0.00 31.12 3.36
255 256 9.632638 CAGGAAATGATTAGATTAGGAAGGAAA 57.367 33.333 0.00 0.00 0.00 3.13
260 261 9.479549 AATGATTAGATTAGGAAGGAAAAAGCA 57.520 29.630 0.00 0.00 0.00 3.91
261 262 8.877864 TGATTAGATTAGGAAGGAAAAAGCAA 57.122 30.769 0.00 0.00 0.00 3.91
262 263 9.308000 TGATTAGATTAGGAAGGAAAAAGCAAA 57.692 29.630 0.00 0.00 0.00 3.68
286 287 4.766404 AAAGAGCCGTAAAATGAAGTGG 57.234 40.909 0.00 0.00 0.00 4.00
287 288 2.711542 AGAGCCGTAAAATGAAGTGGG 58.288 47.619 0.00 0.00 0.00 4.61
288 289 2.304761 AGAGCCGTAAAATGAAGTGGGA 59.695 45.455 0.00 0.00 0.00 4.37
289 290 2.678336 GAGCCGTAAAATGAAGTGGGAG 59.322 50.000 0.00 0.00 0.00 4.30
290 291 1.132453 GCCGTAAAATGAAGTGGGAGC 59.868 52.381 0.00 0.00 0.00 4.70
291 292 2.432444 CCGTAAAATGAAGTGGGAGCA 58.568 47.619 0.00 0.00 0.00 4.26
292 293 3.016736 CCGTAAAATGAAGTGGGAGCAT 58.983 45.455 0.00 0.00 0.00 3.79
293 294 3.181497 CCGTAAAATGAAGTGGGAGCATG 60.181 47.826 0.00 0.00 0.00 4.06
294 295 3.181497 CGTAAAATGAAGTGGGAGCATGG 60.181 47.826 0.00 0.00 0.00 3.66
295 296 2.905415 AAATGAAGTGGGAGCATGGA 57.095 45.000 0.00 0.00 0.00 3.41
296 297 3.393426 AAATGAAGTGGGAGCATGGAT 57.607 42.857 0.00 0.00 0.00 3.41
297 298 2.359981 ATGAAGTGGGAGCATGGATG 57.640 50.000 0.00 0.00 0.00 3.51
298 299 0.256752 TGAAGTGGGAGCATGGATGG 59.743 55.000 0.00 0.00 0.00 3.51
299 300 0.466922 GAAGTGGGAGCATGGATGGG 60.467 60.000 0.00 0.00 0.00 4.00
300 301 0.920763 AAGTGGGAGCATGGATGGGA 60.921 55.000 0.00 0.00 0.00 4.37
301 302 1.150081 GTGGGAGCATGGATGGGAG 59.850 63.158 0.00 0.00 0.00 4.30
302 303 2.114838 GGGAGCATGGATGGGAGC 59.885 66.667 0.00 0.00 0.00 4.70
303 304 2.760378 GGGAGCATGGATGGGAGCA 61.760 63.158 0.00 0.00 0.00 4.26
304 305 1.459369 GGAGCATGGATGGGAGCAT 59.541 57.895 0.00 0.00 0.00 3.79
305 306 0.894184 GGAGCATGGATGGGAGCATG 60.894 60.000 0.00 0.00 0.00 4.06
306 307 0.109913 GAGCATGGATGGGAGCATGA 59.890 55.000 0.00 0.00 0.00 3.07
307 308 0.110678 AGCATGGATGGGAGCATGAG 59.889 55.000 0.00 0.00 0.00 2.90
308 309 0.894184 GCATGGATGGGAGCATGAGG 60.894 60.000 0.00 0.00 0.00 3.86
309 310 0.769247 CATGGATGGGAGCATGAGGA 59.231 55.000 0.00 0.00 0.00 3.71
310 311 1.065647 ATGGATGGGAGCATGAGGAG 58.934 55.000 0.00 0.00 0.00 3.69
311 312 1.058428 TGGATGGGAGCATGAGGAGG 61.058 60.000 0.00 0.00 0.00 4.30
312 313 0.765903 GGATGGGAGCATGAGGAGGA 60.766 60.000 0.00 0.00 0.00 3.71
313 314 1.135094 GATGGGAGCATGAGGAGGAA 58.865 55.000 0.00 0.00 0.00 3.36
314 315 1.072015 GATGGGAGCATGAGGAGGAAG 59.928 57.143 0.00 0.00 0.00 3.46
315 316 1.148048 GGGAGCATGAGGAGGAAGC 59.852 63.158 0.00 0.00 0.00 3.86
316 317 1.630126 GGGAGCATGAGGAGGAAGCA 61.630 60.000 0.00 0.00 0.00 3.91
317 318 0.179051 GGAGCATGAGGAGGAAGCAG 60.179 60.000 0.00 0.00 0.00 4.24
318 319 0.179051 GAGCATGAGGAGGAAGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
319 320 1.823041 GCATGAGGAGGAAGCAGGC 60.823 63.158 0.00 0.00 32.07 4.85
320 321 1.605992 CATGAGGAGGAAGCAGGCA 59.394 57.895 0.00 0.00 0.00 4.75
321 322 0.034767 CATGAGGAGGAAGCAGGCAA 60.035 55.000 0.00 0.00 0.00 4.52
322 323 0.255318 ATGAGGAGGAAGCAGGCAAG 59.745 55.000 0.00 0.00 0.00 4.01
323 324 1.748500 GAGGAGGAAGCAGGCAAGC 60.749 63.158 0.00 0.00 0.00 4.01
325 326 2.045131 GGAGGAAGCAGGCAAGCTG 61.045 63.158 5.21 0.00 45.89 4.24
326 327 2.035312 AGGAAGCAGGCAAGCTGG 59.965 61.111 5.21 0.00 45.89 4.85
327 328 2.034687 GGAAGCAGGCAAGCTGGA 59.965 61.111 5.21 0.00 45.89 3.86
328 329 1.379576 GGAAGCAGGCAAGCTGGAT 60.380 57.895 5.21 0.00 45.89 3.41
329 330 1.382692 GGAAGCAGGCAAGCTGGATC 61.383 60.000 5.21 0.17 45.89 3.36
330 331 1.379576 AAGCAGGCAAGCTGGATCC 60.380 57.895 4.20 4.20 45.89 3.36
331 332 1.860944 AAGCAGGCAAGCTGGATCCT 61.861 55.000 14.23 0.00 45.89 3.24
332 333 2.119655 GCAGGCAAGCTGGATCCTG 61.120 63.158 14.23 14.14 46.63 3.86
333 334 1.302285 CAGGCAAGCTGGATCCTGT 59.698 57.895 18.82 4.51 40.79 4.00
334 335 0.543277 CAGGCAAGCTGGATCCTGTA 59.457 55.000 18.82 0.00 40.79 2.74
335 336 0.835941 AGGCAAGCTGGATCCTGTAG 59.164 55.000 18.82 6.84 0.00 2.74
336 337 0.817229 GGCAAGCTGGATCCTGTAGC 60.817 60.000 18.82 16.12 37.71 3.58
337 338 0.817229 GCAAGCTGGATCCTGTAGCC 60.817 60.000 18.82 3.53 38.18 3.93
338 339 0.835941 CAAGCTGGATCCTGTAGCCT 59.164 55.000 18.82 4.31 38.18 4.58
339 340 2.042464 CAAGCTGGATCCTGTAGCCTA 58.958 52.381 18.82 0.00 38.18 3.93
340 341 2.008242 AGCTGGATCCTGTAGCCTAG 57.992 55.000 18.82 3.97 38.18 3.02
341 342 1.219213 AGCTGGATCCTGTAGCCTAGT 59.781 52.381 18.82 0.00 38.18 2.57
342 343 1.342819 GCTGGATCCTGTAGCCTAGTG 59.657 57.143 18.82 0.00 33.51 2.74
343 344 1.967066 CTGGATCCTGTAGCCTAGTGG 59.033 57.143 14.23 0.00 33.51 4.00
344 345 1.573857 TGGATCCTGTAGCCTAGTGGA 59.426 52.381 14.23 0.00 33.51 4.02
345 346 1.964933 GGATCCTGTAGCCTAGTGGAC 59.035 57.143 3.84 0.00 34.57 4.02
346 347 1.964933 GATCCTGTAGCCTAGTGGACC 59.035 57.143 0.00 0.00 34.57 4.46
347 348 1.008403 TCCTGTAGCCTAGTGGACCT 58.992 55.000 0.00 0.00 34.57 3.85
348 349 1.361543 TCCTGTAGCCTAGTGGACCTT 59.638 52.381 0.00 0.00 34.57 3.50
349 350 2.188817 CCTGTAGCCTAGTGGACCTTT 58.811 52.381 0.00 0.00 34.57 3.11
350 351 2.572104 CCTGTAGCCTAGTGGACCTTTT 59.428 50.000 0.00 0.00 34.57 2.27
351 352 3.369576 CCTGTAGCCTAGTGGACCTTTTC 60.370 52.174 0.00 0.00 34.57 2.29
352 353 3.515901 CTGTAGCCTAGTGGACCTTTTCT 59.484 47.826 0.00 0.00 34.57 2.52
353 354 4.680407 TGTAGCCTAGTGGACCTTTTCTA 58.320 43.478 0.00 0.00 34.57 2.10
418 419 2.676121 TGCAAAGCATGGGTCGGG 60.676 61.111 0.00 0.00 31.71 5.14
450 451 0.547075 AGCGGCTACAGTCTCCTCTA 59.453 55.000 0.00 0.00 0.00 2.43
455 456 3.244630 CGGCTACAGTCTCCTCTATACCT 60.245 52.174 0.00 0.00 0.00 3.08
456 457 4.076394 GGCTACAGTCTCCTCTATACCTG 58.924 52.174 0.00 0.00 0.00 4.00
457 458 4.202482 GGCTACAGTCTCCTCTATACCTGA 60.202 50.000 0.00 0.00 0.00 3.86
458 459 4.758165 GCTACAGTCTCCTCTATACCTGAC 59.242 50.000 0.00 0.00 0.00 3.51
461 462 4.017407 ACAGTCTCCTCTATACCTGACCAA 60.017 45.833 0.00 0.00 0.00 3.67
462 463 4.956700 CAGTCTCCTCTATACCTGACCAAA 59.043 45.833 0.00 0.00 0.00 3.28
463 464 5.600484 CAGTCTCCTCTATACCTGACCAAAT 59.400 44.000 0.00 0.00 0.00 2.32
464 465 5.600484 AGTCTCCTCTATACCTGACCAAATG 59.400 44.000 0.00 0.00 0.00 2.32
465 466 4.901849 TCTCCTCTATACCTGACCAAATGG 59.098 45.833 0.00 0.00 42.17 3.16
466 467 3.973973 TCCTCTATACCTGACCAAATGGG 59.026 47.826 4.17 0.00 44.81 4.00
467 468 3.496870 CCTCTATACCTGACCAAATGGGC 60.497 52.174 4.17 0.37 45.93 5.36
468 469 2.441750 TCTATACCTGACCAAATGGGCC 59.558 50.000 2.09 0.00 44.80 5.80
469 470 0.106719 ATACCTGACCAAATGGGCCG 60.107 55.000 2.09 0.00 44.80 6.13
470 471 2.755469 CCTGACCAAATGGGCCGG 60.755 66.667 2.09 1.48 44.80 6.13
471 472 2.035626 CTGACCAAATGGGCCGGT 59.964 61.111 1.90 0.00 44.80 5.28
472 473 1.606313 CTGACCAAATGGGCCGGTT 60.606 57.895 1.90 0.00 44.80 4.44
473 474 1.152440 TGACCAAATGGGCCGGTTT 60.152 52.632 1.90 0.00 44.80 3.27
474 475 0.760945 TGACCAAATGGGCCGGTTTT 60.761 50.000 1.90 0.00 44.80 2.43
475 476 0.394938 GACCAAATGGGCCGGTTTTT 59.605 50.000 1.90 0.00 42.05 1.94
521 522 4.785453 GGCTCGTCTTGGGCCAGG 62.785 72.222 9.81 9.81 44.69 4.45
523 524 4.020617 CTCGTCTTGGGCCAGGCA 62.021 66.667 15.19 0.00 0.00 4.75
524 525 4.329545 TCGTCTTGGGCCAGGCAC 62.330 66.667 15.19 11.31 0.00 5.01
625 626 2.124860 GGCACGGCCCGATTAAGT 60.125 61.111 11.71 0.00 44.06 2.24
626 627 1.747745 GGCACGGCCCGATTAAGTT 60.748 57.895 11.71 0.00 44.06 2.66
627 628 1.310216 GGCACGGCCCGATTAAGTTT 61.310 55.000 11.71 0.00 44.06 2.66
628 629 0.524414 GCACGGCCCGATTAAGTTTT 59.476 50.000 11.71 0.00 0.00 2.43
629 630 1.068125 GCACGGCCCGATTAAGTTTTT 60.068 47.619 11.71 0.00 0.00 1.94
662 663 9.555727 TTTTTCTACACCTATATATGGCTCAAC 57.444 33.333 0.00 0.00 0.00 3.18
663 664 7.849322 TTCTACACCTATATATGGCTCAACA 57.151 36.000 0.00 0.00 0.00 3.33
664 665 8.435931 TTCTACACCTATATATGGCTCAACAT 57.564 34.615 0.00 0.00 34.90 2.71
665 666 7.840931 TCTACACCTATATATGGCTCAACATG 58.159 38.462 0.00 0.00 32.39 3.21
666 667 6.439636 ACACCTATATATGGCTCAACATGT 57.560 37.500 0.00 0.00 32.39 3.21
667 668 7.553504 ACACCTATATATGGCTCAACATGTA 57.446 36.000 0.00 0.00 32.39 2.29
668 669 7.973402 ACACCTATATATGGCTCAACATGTAA 58.027 34.615 0.00 0.00 30.02 2.41
669 670 8.436778 ACACCTATATATGGCTCAACATGTAAA 58.563 33.333 0.00 0.00 30.02 2.01
670 671 9.283768 CACCTATATATGGCTCAACATGTAAAA 57.716 33.333 0.00 0.00 30.02 1.52
671 672 9.860650 ACCTATATATGGCTCAACATGTAAAAA 57.139 29.630 0.00 0.00 30.02 1.94
676 677 5.323371 TGGCTCAACATGTAAAAATAGGC 57.677 39.130 0.00 3.92 0.00 3.93
677 678 5.016173 TGGCTCAACATGTAAAAATAGGCT 58.984 37.500 0.00 0.00 0.00 4.58
678 679 6.184068 TGGCTCAACATGTAAAAATAGGCTA 58.816 36.000 0.00 0.00 0.00 3.93
679 680 6.661377 TGGCTCAACATGTAAAAATAGGCTAA 59.339 34.615 0.00 0.00 0.00 3.09
680 681 7.177568 TGGCTCAACATGTAAAAATAGGCTAAA 59.822 33.333 0.00 0.00 0.00 1.85
681 682 8.032451 GGCTCAACATGTAAAAATAGGCTAAAA 58.968 33.333 0.00 0.00 0.00 1.52
682 683 9.418045 GCTCAACATGTAAAAATAGGCTAAAAA 57.582 29.630 0.00 0.00 0.00 1.94
684 685 9.400638 TCAACATGTAAAAATAGGCTAAAAACG 57.599 29.630 0.00 0.00 0.00 3.60
685 686 7.806149 ACATGTAAAAATAGGCTAAAAACGC 57.194 32.000 0.00 0.00 0.00 4.84
686 687 7.599171 ACATGTAAAAATAGGCTAAAAACGCT 58.401 30.769 0.00 0.00 0.00 5.07
687 688 7.753580 ACATGTAAAAATAGGCTAAAAACGCTC 59.246 33.333 0.00 0.00 0.00 5.03
688 689 7.204496 TGTAAAAATAGGCTAAAAACGCTCA 57.796 32.000 0.00 0.00 0.00 4.26
689 690 7.302524 TGTAAAAATAGGCTAAAAACGCTCAG 58.697 34.615 0.00 0.00 0.00 3.35
690 691 5.959618 AAAATAGGCTAAAAACGCTCAGT 57.040 34.783 0.00 0.00 0.00 3.41
691 692 4.946784 AATAGGCTAAAAACGCTCAGTG 57.053 40.909 0.00 0.00 0.00 3.66
692 693 0.875059 AGGCTAAAAACGCTCAGTGC 59.125 50.000 0.00 0.00 38.57 4.40
706 707 5.071955 GCTCAGTGCGTCAAATAATAGAC 57.928 43.478 0.00 0.00 0.00 2.59
707 708 4.806247 GCTCAGTGCGTCAAATAATAGACT 59.194 41.667 0.00 0.00 32.68 3.24
708 709 5.276584 GCTCAGTGCGTCAAATAATAGACTG 60.277 44.000 0.00 0.00 32.68 3.51
709 710 5.961272 TCAGTGCGTCAAATAATAGACTGA 58.039 37.500 0.00 0.00 36.98 3.41
710 711 6.394809 TCAGTGCGTCAAATAATAGACTGAA 58.605 36.000 0.00 0.00 36.53 3.02
711 712 6.871492 TCAGTGCGTCAAATAATAGACTGAAA 59.129 34.615 0.00 0.00 36.53 2.69
712 713 7.386573 TCAGTGCGTCAAATAATAGACTGAAAA 59.613 33.333 0.00 0.00 36.53 2.29
713 714 8.177663 CAGTGCGTCAAATAATAGACTGAAAAT 58.822 33.333 0.00 0.00 32.98 1.82
714 715 9.378551 AGTGCGTCAAATAATAGACTGAAAATA 57.621 29.630 0.00 0.00 32.68 1.40
717 718 9.107367 GCGTCAAATAATAGACTGAAAATATGC 57.893 33.333 0.00 0.00 32.68 3.14
718 719 9.306280 CGTCAAATAATAGACTGAAAATATGCG 57.694 33.333 0.00 0.00 32.68 4.73
719 720 9.599322 GTCAAATAATAGACTGAAAATATGCGG 57.401 33.333 0.00 0.00 0.00 5.69
720 721 8.289618 TCAAATAATAGACTGAAAATATGCGGC 58.710 33.333 0.00 0.00 0.00 6.53
721 722 6.743575 ATAATAGACTGAAAATATGCGGCC 57.256 37.500 0.00 0.00 0.00 6.13
722 723 1.680338 AGACTGAAAATATGCGGCCC 58.320 50.000 0.00 0.00 0.00 5.80
723 724 1.064758 AGACTGAAAATATGCGGCCCA 60.065 47.619 0.00 0.00 0.00 5.36
724 725 1.956477 GACTGAAAATATGCGGCCCAT 59.044 47.619 10.96 10.96 37.97 4.00
725 726 1.956477 ACTGAAAATATGCGGCCCATC 59.044 47.619 9.67 0.00 35.34 3.51
726 727 1.955778 CTGAAAATATGCGGCCCATCA 59.044 47.619 9.67 0.00 35.34 3.07
727 728 2.559668 CTGAAAATATGCGGCCCATCAT 59.440 45.455 9.67 7.38 35.34 2.45
728 729 2.296752 TGAAAATATGCGGCCCATCATG 59.703 45.455 9.67 0.00 35.34 3.07
729 730 0.604578 AAATATGCGGCCCATCATGC 59.395 50.000 9.67 0.52 35.34 4.06
730 731 0.251474 AATATGCGGCCCATCATGCT 60.251 50.000 9.67 0.00 35.34 3.79
731 732 0.620030 ATATGCGGCCCATCATGCTA 59.380 50.000 9.67 0.00 35.34 3.49
732 733 0.399833 TATGCGGCCCATCATGCTAA 59.600 50.000 9.67 0.00 35.34 3.09
733 734 0.467844 ATGCGGCCCATCATGCTAAA 60.468 50.000 0.00 0.00 0.00 1.85
734 735 1.360192 GCGGCCCATCATGCTAAAC 59.640 57.895 0.00 0.00 0.00 2.01
735 736 1.648720 CGGCCCATCATGCTAAACG 59.351 57.895 0.00 0.00 0.00 3.60
736 737 1.785041 CGGCCCATCATGCTAAACGG 61.785 60.000 0.00 0.00 0.00 4.44
737 738 1.455383 GGCCCATCATGCTAAACGGG 61.455 60.000 0.00 0.00 36.71 5.28
738 739 2.032981 CCCATCATGCTAAACGGGC 58.967 57.895 0.00 0.00 0.00 6.13
739 740 1.455383 CCCATCATGCTAAACGGGCC 61.455 60.000 0.00 0.00 0.00 5.80
740 741 0.751277 CCATCATGCTAAACGGGCCA 60.751 55.000 4.39 0.00 0.00 5.36
741 742 1.102154 CATCATGCTAAACGGGCCAA 58.898 50.000 4.39 0.00 0.00 4.52
742 743 1.102978 ATCATGCTAAACGGGCCAAC 58.897 50.000 4.39 0.00 0.00 3.77
743 744 1.136565 CATGCTAAACGGGCCAACG 59.863 57.895 4.39 1.48 40.31 4.10
756 757 3.273834 CAACGTGCCGACCCGTTT 61.274 61.111 0.00 0.00 44.16 3.60
757 758 1.955157 CAACGTGCCGACCCGTTTA 60.955 57.895 0.00 0.00 44.16 2.01
758 759 1.955663 AACGTGCCGACCCGTTTAC 60.956 57.895 0.00 0.00 44.16 2.01
759 760 2.048877 CGTGCCGACCCGTTTACT 60.049 61.111 0.00 0.00 0.00 2.24
760 761 1.212490 CGTGCCGACCCGTTTACTA 59.788 57.895 0.00 0.00 0.00 1.82
761 762 0.388391 CGTGCCGACCCGTTTACTAA 60.388 55.000 0.00 0.00 0.00 2.24
762 763 1.070821 GTGCCGACCCGTTTACTAAC 58.929 55.000 0.00 0.00 0.00 2.34
763 764 0.968405 TGCCGACCCGTTTACTAACT 59.032 50.000 0.00 0.00 31.89 2.24
764 765 1.337074 TGCCGACCCGTTTACTAACTG 60.337 52.381 0.00 0.00 31.89 3.16
765 766 1.067635 GCCGACCCGTTTACTAACTGA 60.068 52.381 0.00 0.00 31.89 3.41
766 767 2.872370 CCGACCCGTTTACTAACTGAG 58.128 52.381 0.00 0.00 31.89 3.35
767 768 2.257034 CGACCCGTTTACTAACTGAGC 58.743 52.381 0.00 0.00 31.89 4.26
768 769 2.614779 GACCCGTTTACTAACTGAGCC 58.385 52.381 0.00 0.00 31.89 4.70
769 770 1.067354 ACCCGTTTACTAACTGAGCCG 60.067 52.381 0.00 0.00 31.89 5.52
770 771 1.067354 CCCGTTTACTAACTGAGCCGT 60.067 52.381 0.00 0.00 31.89 5.68
771 772 1.990563 CCGTTTACTAACTGAGCCGTG 59.009 52.381 0.00 0.00 31.89 4.94
772 773 1.389106 CGTTTACTAACTGAGCCGTGC 59.611 52.381 0.00 0.00 31.89 5.34
773 774 1.730612 GTTTACTAACTGAGCCGTGCC 59.269 52.381 0.00 0.00 0.00 5.01
774 775 0.970640 TTACTAACTGAGCCGTGCCA 59.029 50.000 0.00 0.00 0.00 4.92
775 776 0.530744 TACTAACTGAGCCGTGCCAG 59.469 55.000 10.49 10.49 34.62 4.85
776 777 1.448540 CTAACTGAGCCGTGCCAGG 60.449 63.158 14.10 0.00 33.43 4.45
777 778 2.859273 CTAACTGAGCCGTGCCAGGG 62.859 65.000 0.00 0.00 33.43 4.45
823 824 3.157680 GGCACGGCCCCATATAGT 58.842 61.111 0.00 0.00 44.06 2.12
824 825 2.368591 GGCACGGCCCCATATAGTA 58.631 57.895 0.00 0.00 44.06 1.82
825 826 0.688487 GGCACGGCCCCATATAGTAA 59.312 55.000 0.00 0.00 44.06 2.24
826 827 1.280998 GGCACGGCCCCATATAGTAAT 59.719 52.381 0.00 0.00 44.06 1.89
827 828 2.629051 GCACGGCCCCATATAGTAATC 58.371 52.381 0.00 0.00 0.00 1.75
828 829 2.027561 GCACGGCCCCATATAGTAATCA 60.028 50.000 0.00 0.00 0.00 2.57
829 830 3.370527 GCACGGCCCCATATAGTAATCAT 60.371 47.826 0.00 0.00 0.00 2.45
830 831 4.191544 CACGGCCCCATATAGTAATCATG 58.808 47.826 0.00 0.00 0.00 3.07
831 832 3.206150 CGGCCCCATATAGTAATCATGC 58.794 50.000 0.00 0.00 0.00 4.06
832 833 3.555966 GGCCCCATATAGTAATCATGCC 58.444 50.000 0.00 0.00 0.00 4.40
833 834 3.555966 GCCCCATATAGTAATCATGCCC 58.444 50.000 0.00 0.00 0.00 5.36
834 835 3.203040 GCCCCATATAGTAATCATGCCCT 59.797 47.826 0.00 0.00 0.00 5.19
835 836 4.785301 CCCCATATAGTAATCATGCCCTG 58.215 47.826 0.00 0.00 0.00 4.45
836 837 4.385643 CCCCATATAGTAATCATGCCCTGG 60.386 50.000 0.00 0.00 0.00 4.45
837 838 4.202441 CCATATAGTAATCATGCCCTGGC 58.798 47.826 0.00 0.00 42.35 4.85
838 839 2.479566 ATAGTAATCATGCCCTGGCG 57.520 50.000 3.32 0.00 45.51 5.69
839 840 0.396435 TAGTAATCATGCCCTGGCGG 59.604 55.000 3.32 0.00 45.51 6.13
865 866 2.895372 GGGCCAGGCACGATTACG 60.895 66.667 15.19 0.00 45.75 3.18
866 867 2.185867 GGCCAGGCACGATTACGA 59.814 61.111 15.19 0.00 42.66 3.43
867 868 1.227556 GGCCAGGCACGATTACGAT 60.228 57.895 15.19 0.00 42.66 3.73
868 869 1.498865 GGCCAGGCACGATTACGATG 61.499 60.000 15.19 0.00 42.66 3.84
869 870 1.498865 GCCAGGCACGATTACGATGG 61.499 60.000 6.55 0.00 42.66 3.51
870 871 0.880278 CCAGGCACGATTACGATGGG 60.880 60.000 0.00 0.00 42.66 4.00
871 872 1.227556 AGGCACGATTACGATGGGC 60.228 57.895 0.00 0.00 42.66 5.36
872 873 2.251642 GGCACGATTACGATGGGCC 61.252 63.158 0.00 0.00 42.66 5.80
873 874 2.594962 GCACGATTACGATGGGCCG 61.595 63.158 0.00 0.00 42.66 6.13
874 875 1.954146 CACGATTACGATGGGCCGG 60.954 63.158 0.00 0.00 42.66 6.13
875 876 2.357034 CGATTACGATGGGCCGGG 60.357 66.667 2.18 0.00 42.66 5.73
876 877 2.668550 GATTACGATGGGCCGGGC 60.669 66.667 22.00 22.00 0.00 6.13
912 913 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
927 928 2.316372 AGGTATGGTCTCCTTGGTCTCT 59.684 50.000 0.00 0.00 0.00 3.10
1097 1102 1.610673 TCGCCAAGCTCTTCCTCCT 60.611 57.895 0.00 0.00 0.00 3.69
1161 1166 1.421410 CCACCGCCGATTTCTTCTCG 61.421 60.000 0.00 0.00 35.92 4.04
1428 1436 0.917533 TCTACTACACCTCCTCCGCT 59.082 55.000 0.00 0.00 0.00 5.52
1659 1670 1.045407 TCAACACCTACGAGTGGCTT 58.955 50.000 9.20 0.00 42.28 4.35
2255 2297 3.551863 GGATACGATGAGGAGCTTGTGAG 60.552 52.174 0.00 0.00 0.00 3.51
2273 2315 2.063378 GGGCTGAGGAGGTGGAGAG 61.063 68.421 0.00 0.00 0.00 3.20
2332 2374 3.005539 TGAGGGAGAGGCTGGCAC 61.006 66.667 3.38 0.00 0.00 5.01
2407 2449 1.960994 GCTCGCCGAGTTCTTGAAGC 61.961 60.000 16.50 0.00 31.39 3.86
2457 2500 3.812053 CACAAGATAGCTACAGGATTGGC 59.188 47.826 0.00 0.00 0.00 4.52
2515 2562 2.749621 CCACCCTGAACTATGAACTTGC 59.250 50.000 0.00 0.00 0.00 4.01
2524 2571 1.806542 CTATGAACTTGCGCTTGTGGT 59.193 47.619 9.73 0.00 0.00 4.16
2525 2572 0.311790 ATGAACTTGCGCTTGTGGTG 59.688 50.000 9.73 0.00 0.00 4.17
2526 2573 1.029408 TGAACTTGCGCTTGTGGTGT 61.029 50.000 9.73 0.00 0.00 4.16
2527 2574 0.100503 GAACTTGCGCTTGTGGTGTT 59.899 50.000 9.73 3.06 0.00 3.32
2528 2575 1.332375 GAACTTGCGCTTGTGGTGTTA 59.668 47.619 9.73 0.00 0.00 2.41
2529 2576 1.384525 ACTTGCGCTTGTGGTGTTAA 58.615 45.000 9.73 0.00 0.00 2.01
2530 2577 1.333619 ACTTGCGCTTGTGGTGTTAAG 59.666 47.619 9.73 1.73 0.00 1.85
2531 2578 1.601903 CTTGCGCTTGTGGTGTTAAGA 59.398 47.619 9.73 0.00 0.00 2.10
2532 2579 1.890876 TGCGCTTGTGGTGTTAAGAT 58.109 45.000 9.73 0.00 0.00 2.40
2533 2580 1.535028 TGCGCTTGTGGTGTTAAGATG 59.465 47.619 9.73 0.00 0.00 2.90
2534 2581 1.804151 GCGCTTGTGGTGTTAAGATGA 59.196 47.619 0.00 0.00 0.00 2.92
2535 2582 2.420022 GCGCTTGTGGTGTTAAGATGAT 59.580 45.455 0.00 0.00 0.00 2.45
2536 2583 3.728864 GCGCTTGTGGTGTTAAGATGATG 60.729 47.826 0.00 0.00 0.00 3.07
2537 2584 3.436704 CGCTTGTGGTGTTAAGATGATGT 59.563 43.478 0.00 0.00 0.00 3.06
2538 2585 4.669965 CGCTTGTGGTGTTAAGATGATGTG 60.670 45.833 0.00 0.00 0.00 3.21
2539 2586 4.379813 GCTTGTGGTGTTAAGATGATGTGG 60.380 45.833 0.00 0.00 0.00 4.17
2559 2606 5.588648 TGTGGTGAAAGTTATAATAGCTGCC 59.411 40.000 0.00 0.00 0.00 4.85
2602 2651 5.722263 ATGATATGTCATAGCTCTGTGCTC 58.278 41.667 7.59 0.00 42.02 4.26
2613 2662 2.354259 CTCTGTGCTCCTGAATTCCAC 58.646 52.381 2.27 4.03 0.00 4.02
2705 2773 4.467769 CTCCCTTGATGAATTGCTATGGT 58.532 43.478 0.00 0.00 0.00 3.55
2749 2817 3.230608 TGAGCCCTCCTACTCATGG 57.769 57.895 0.00 0.00 37.99 3.66
2783 2851 4.728608 CGAAATCACAATAAGCGCCTAAAC 59.271 41.667 2.29 0.00 0.00 2.01
2860 2928 7.937649 ACCAACTACTTAAATGGAGTTGTTTC 58.062 34.615 15.19 0.00 44.71 2.78
2892 2962 0.971959 TGTCCATTGCATTGCCCCTC 60.972 55.000 6.12 0.00 0.00 4.30
2915 2985 1.882623 GTCTTTTCTTGGCCTCCTGTG 59.117 52.381 3.32 0.00 0.00 3.66
2920 2990 0.547471 TCTTGGCCTCCTGTGATCCA 60.547 55.000 3.32 0.00 0.00 3.41
2965 3035 8.015658 GTCTGTTGGTATAGCTTTAGTTTGTTG 58.984 37.037 3.20 0.00 0.00 3.33
3050 3138 1.134175 GAGACTACTCTGGTGCTGAGC 59.866 57.143 0.00 0.00 39.78 4.26
3051 3139 0.891373 GACTACTCTGGTGCTGAGCA 59.109 55.000 1.40 1.40 33.65 4.26
3052 3140 5.520237 GAGACTACTCTGGTGCTGAGCAC 62.520 56.522 28.35 28.35 46.66 4.40
3078 3166 4.851843 TCTGTTGCTGAAATGGATCTCAT 58.148 39.130 0.00 0.00 37.79 2.90
3086 3174 3.887110 TGAAATGGATCTCATGGCATGAC 59.113 43.478 25.63 16.23 35.99 3.06
3186 3286 3.564511 CCTAATGTTCTTTGTGGCAACG 58.435 45.455 0.00 0.00 42.51 4.10
3187 3287 2.507339 AATGTTCTTTGTGGCAACGG 57.493 45.000 0.00 0.00 42.51 4.44
3213 3313 5.964958 TTTCTGAAGAAATACTTGCCTGG 57.035 39.130 1.31 0.00 38.94 4.45
3266 3366 3.760684 AGGATCACAGCTTTGAAATGGTC 59.239 43.478 6.66 0.00 0.00 4.02
3299 3399 2.843545 GCTGGTTTCAGTGGGGGA 59.156 61.111 0.00 0.00 42.78 4.81
3351 3451 4.081087 GGTCAGGTTCTGGCTAGATGTTTA 60.081 45.833 0.00 0.00 36.22 2.01
3359 3459 1.950216 GGCTAGATGTTTAGCTTGGCC 59.050 52.381 0.00 0.00 44.32 5.36
3403 3503 0.954452 CTGAACTGTTCCTTGTGGCC 59.046 55.000 17.26 0.00 0.00 5.36
3404 3504 0.467290 TGAACTGTTCCTTGTGGCCC 60.467 55.000 17.26 0.00 0.00 5.80
3426 3526 3.087781 CTGATCCTGATATCTCGGCAGA 58.912 50.000 3.98 0.00 0.00 4.26
3427 3527 3.700539 CTGATCCTGATATCTCGGCAGAT 59.299 47.826 3.98 5.11 42.48 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.054671 CAACGCCAAACAACCAATATTGT 58.945 39.130 14.25 0.18 44.76 2.71
10 11 4.054671 ACAACGCCAAACAACCAATATTG 58.945 39.130 8.58 8.58 35.59 1.90
11 12 4.038642 AGACAACGCCAAACAACCAATATT 59.961 37.500 0.00 0.00 0.00 1.28
12 13 3.572255 AGACAACGCCAAACAACCAATAT 59.428 39.130 0.00 0.00 0.00 1.28
13 14 2.952978 AGACAACGCCAAACAACCAATA 59.047 40.909 0.00 0.00 0.00 1.90
14 15 1.754226 AGACAACGCCAAACAACCAAT 59.246 42.857 0.00 0.00 0.00 3.16
15 16 1.178276 AGACAACGCCAAACAACCAA 58.822 45.000 0.00 0.00 0.00 3.67
16 17 1.671845 GTAGACAACGCCAAACAACCA 59.328 47.619 0.00 0.00 0.00 3.67
17 18 1.002142 GGTAGACAACGCCAAACAACC 60.002 52.381 0.00 0.00 0.00 3.77
18 19 1.002142 GGGTAGACAACGCCAAACAAC 60.002 52.381 0.00 0.00 35.04 3.32
19 20 1.310904 GGGTAGACAACGCCAAACAA 58.689 50.000 0.00 0.00 35.04 2.83
20 21 3.009612 GGGTAGACAACGCCAAACA 57.990 52.632 0.00 0.00 35.04 2.83
32 33 2.176364 AGTAAGGCGTCTATGGGGTAGA 59.824 50.000 0.00 0.00 37.09 2.59
33 34 2.595238 AGTAAGGCGTCTATGGGGTAG 58.405 52.381 0.00 0.00 0.00 3.18
34 35 2.761786 AGTAAGGCGTCTATGGGGTA 57.238 50.000 0.00 0.00 0.00 3.69
35 36 1.875488 AAGTAAGGCGTCTATGGGGT 58.125 50.000 0.00 0.00 0.00 4.95
36 37 2.093128 ACAAAGTAAGGCGTCTATGGGG 60.093 50.000 0.00 0.00 0.00 4.96
37 38 3.261981 ACAAAGTAAGGCGTCTATGGG 57.738 47.619 0.00 0.00 0.00 4.00
38 39 5.622770 AAAACAAAGTAAGGCGTCTATGG 57.377 39.130 0.00 0.00 0.00 2.74
39 40 7.118680 TCCTAAAAACAAAGTAAGGCGTCTATG 59.881 37.037 0.00 0.00 0.00 2.23
40 41 7.163441 TCCTAAAAACAAAGTAAGGCGTCTAT 58.837 34.615 0.00 0.00 0.00 1.98
41 42 6.523840 TCCTAAAAACAAAGTAAGGCGTCTA 58.476 36.000 0.00 0.00 0.00 2.59
42 43 5.370679 TCCTAAAAACAAAGTAAGGCGTCT 58.629 37.500 0.00 0.00 0.00 4.18
43 44 5.678132 TCCTAAAAACAAAGTAAGGCGTC 57.322 39.130 0.00 0.00 0.00 5.19
44 45 4.023450 GCTCCTAAAAACAAAGTAAGGCGT 60.023 41.667 0.00 0.00 0.00 5.68
45 46 4.023536 TGCTCCTAAAAACAAAGTAAGGCG 60.024 41.667 0.00 0.00 0.00 5.52
46 47 5.447624 TGCTCCTAAAAACAAAGTAAGGC 57.552 39.130 0.00 0.00 0.00 4.35
47 48 7.702348 GCATATGCTCCTAAAAACAAAGTAAGG 59.298 37.037 20.64 0.00 38.21 2.69
48 49 7.702348 GGCATATGCTCCTAAAAACAAAGTAAG 59.298 37.037 26.12 0.00 41.70 2.34
49 50 7.396055 AGGCATATGCTCCTAAAAACAAAGTAA 59.604 33.333 26.12 0.00 41.70 2.24
50 51 6.889722 AGGCATATGCTCCTAAAAACAAAGTA 59.110 34.615 26.12 0.00 41.70 2.24
51 52 5.716703 AGGCATATGCTCCTAAAAACAAAGT 59.283 36.000 26.12 0.00 41.70 2.66
52 53 6.212888 AGGCATATGCTCCTAAAAACAAAG 57.787 37.500 26.12 0.00 41.70 2.77
53 54 6.603940 AAGGCATATGCTCCTAAAAACAAA 57.396 33.333 26.12 0.00 41.70 2.83
54 55 6.889722 AGTAAGGCATATGCTCCTAAAAACAA 59.110 34.615 26.12 0.00 41.70 2.83
55 56 6.423182 AGTAAGGCATATGCTCCTAAAAACA 58.577 36.000 26.12 0.00 41.70 2.83
56 57 6.944234 AGTAAGGCATATGCTCCTAAAAAC 57.056 37.500 26.12 13.03 41.70 2.43
57 58 7.719633 CCTAAGTAAGGCATATGCTCCTAAAAA 59.280 37.037 26.12 6.58 38.97 1.94
58 59 7.224297 CCTAAGTAAGGCATATGCTCCTAAAA 58.776 38.462 26.12 7.89 38.97 1.52
59 60 6.769512 CCTAAGTAAGGCATATGCTCCTAAA 58.230 40.000 26.12 6.30 38.97 1.85
60 61 6.360370 CCTAAGTAAGGCATATGCTCCTAA 57.640 41.667 26.12 6.21 38.97 2.69
62 63 4.899352 CCTAAGTAAGGCATATGCTCCT 57.101 45.455 26.12 13.63 38.97 3.69
74 75 1.067354 ACAACCGGACGCCTAAGTAAG 60.067 52.381 9.46 0.00 0.00 2.34
75 76 0.968405 ACAACCGGACGCCTAAGTAA 59.032 50.000 9.46 0.00 0.00 2.24
76 77 1.832883 TACAACCGGACGCCTAAGTA 58.167 50.000 9.46 0.00 0.00 2.24
77 78 0.968405 TTACAACCGGACGCCTAAGT 59.032 50.000 9.46 0.00 0.00 2.24
78 79 1.067354 AGTTACAACCGGACGCCTAAG 60.067 52.381 9.46 0.00 0.00 2.18
79 80 0.968405 AGTTACAACCGGACGCCTAA 59.032 50.000 9.46 0.00 0.00 2.69
80 81 0.968405 AAGTTACAACCGGACGCCTA 59.032 50.000 9.46 0.00 0.00 3.93
81 82 0.320160 GAAGTTACAACCGGACGCCT 60.320 55.000 9.46 0.00 0.00 5.52
82 83 0.600782 TGAAGTTACAACCGGACGCC 60.601 55.000 9.46 0.00 0.00 5.68
83 84 1.219646 TTGAAGTTACAACCGGACGC 58.780 50.000 9.46 0.00 0.00 5.19
84 85 3.310501 AGTTTTGAAGTTACAACCGGACG 59.689 43.478 9.46 0.00 0.00 4.79
85 86 4.888038 AGTTTTGAAGTTACAACCGGAC 57.112 40.909 9.46 0.00 0.00 4.79
86 87 7.255208 GGAATAAGTTTTGAAGTTACAACCGGA 60.255 37.037 9.46 0.00 0.00 5.14
87 88 6.859508 GGAATAAGTTTTGAAGTTACAACCGG 59.140 38.462 0.00 0.00 0.00 5.28
88 89 7.419204 TGGAATAAGTTTTGAAGTTACAACCG 58.581 34.615 0.00 0.00 0.00 4.44
89 90 9.758651 AATGGAATAAGTTTTGAAGTTACAACC 57.241 29.630 0.00 0.00 0.00 3.77
95 96 8.088365 GGCTACAATGGAATAAGTTTTGAAGTT 58.912 33.333 0.00 0.00 0.00 2.66
96 97 7.451566 AGGCTACAATGGAATAAGTTTTGAAGT 59.548 33.333 0.00 0.00 0.00 3.01
97 98 7.830739 AGGCTACAATGGAATAAGTTTTGAAG 58.169 34.615 0.00 0.00 0.00 3.02
98 99 7.775053 AGGCTACAATGGAATAAGTTTTGAA 57.225 32.000 0.00 0.00 0.00 2.69
99 100 7.556275 CCTAGGCTACAATGGAATAAGTTTTGA 59.444 37.037 0.00 0.00 0.00 2.69
100 101 7.556275 TCCTAGGCTACAATGGAATAAGTTTTG 59.444 37.037 2.96 0.00 0.00 2.44
101 102 7.556635 GTCCTAGGCTACAATGGAATAAGTTTT 59.443 37.037 2.96 0.00 0.00 2.43
102 103 7.054751 GTCCTAGGCTACAATGGAATAAGTTT 58.945 38.462 2.96 0.00 0.00 2.66
103 104 6.592870 GTCCTAGGCTACAATGGAATAAGTT 58.407 40.000 2.96 0.00 0.00 2.66
104 105 5.221461 CGTCCTAGGCTACAATGGAATAAGT 60.221 44.000 2.96 0.00 0.00 2.24
105 106 5.010719 TCGTCCTAGGCTACAATGGAATAAG 59.989 44.000 2.96 0.00 0.00 1.73
106 107 4.897076 TCGTCCTAGGCTACAATGGAATAA 59.103 41.667 2.96 0.00 0.00 1.40
107 108 4.476297 TCGTCCTAGGCTACAATGGAATA 58.524 43.478 2.96 0.00 0.00 1.75
108 109 3.305720 TCGTCCTAGGCTACAATGGAAT 58.694 45.455 2.96 0.00 0.00 3.01
109 110 2.693591 CTCGTCCTAGGCTACAATGGAA 59.306 50.000 2.96 0.00 0.00 3.53
110 111 2.092049 TCTCGTCCTAGGCTACAATGGA 60.092 50.000 2.96 0.00 0.00 3.41
111 112 2.034812 GTCTCGTCCTAGGCTACAATGG 59.965 54.545 2.96 0.00 0.00 3.16
112 113 2.952978 AGTCTCGTCCTAGGCTACAATG 59.047 50.000 2.96 0.00 26.92 2.82
113 114 3.300239 AGTCTCGTCCTAGGCTACAAT 57.700 47.619 2.96 0.00 26.92 2.71
114 115 2.753452 CAAGTCTCGTCCTAGGCTACAA 59.247 50.000 2.96 0.00 29.24 2.41
115 116 2.366533 CAAGTCTCGTCCTAGGCTACA 58.633 52.381 2.96 0.00 29.24 2.74
116 117 1.065851 GCAAGTCTCGTCCTAGGCTAC 59.934 57.143 2.96 0.00 29.24 3.58
117 118 1.390565 GCAAGTCTCGTCCTAGGCTA 58.609 55.000 2.96 0.00 29.24 3.93
118 119 1.324005 GGCAAGTCTCGTCCTAGGCT 61.324 60.000 2.96 0.00 31.08 4.58
119 120 1.142097 GGCAAGTCTCGTCCTAGGC 59.858 63.158 2.96 0.00 0.00 3.93
120 121 0.457851 CAGGCAAGTCTCGTCCTAGG 59.542 60.000 0.82 0.82 0.00 3.02
121 122 0.179124 GCAGGCAAGTCTCGTCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
122 123 0.612174 AGCAGGCAAGTCTCGTCCTA 60.612 55.000 0.00 0.00 0.00 2.94
123 124 1.882989 GAGCAGGCAAGTCTCGTCCT 61.883 60.000 0.00 0.00 0.00 3.85
124 125 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
125 126 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
126 127 1.882989 GAGGAGCAGGCAAGTCTCGT 61.883 60.000 0.00 0.00 0.00 4.18
127 128 1.153667 GAGGAGCAGGCAAGTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
128 129 1.220477 GGAGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
129 130 2.297129 GGGAGGAGCAGGCAAGTCT 61.297 63.158 0.00 0.00 0.00 3.24
130 131 2.270527 GGGAGGAGCAGGCAAGTC 59.729 66.667 0.00 0.00 0.00 3.01
131 132 3.710722 CGGGAGGAGCAGGCAAGT 61.711 66.667 0.00 0.00 0.00 3.16
149 150 4.508128 AGTACGGATGGGCGCACG 62.508 66.667 10.83 9.06 0.00 5.34
150 151 2.585247 GAGTACGGATGGGCGCAC 60.585 66.667 10.83 6.04 0.00 5.34
151 152 3.845259 GGAGTACGGATGGGCGCA 61.845 66.667 10.83 5.70 0.00 6.09
152 153 4.603946 GGGAGTACGGATGGGCGC 62.604 72.222 0.00 0.00 0.00 6.53
153 154 4.280494 CGGGAGTACGGATGGGCG 62.280 72.222 0.00 0.00 0.00 6.13
154 155 4.603946 GCGGGAGTACGGATGGGC 62.604 72.222 0.00 0.00 0.00 5.36
155 156 4.280494 CGCGGGAGTACGGATGGG 62.280 72.222 0.00 0.00 0.00 4.00
156 157 1.521450 ATACGCGGGAGTACGGATGG 61.521 60.000 12.47 0.00 29.89 3.51
157 158 0.386858 CATACGCGGGAGTACGGATG 60.387 60.000 12.47 0.00 43.56 3.51
158 159 0.820891 ACATACGCGGGAGTACGGAT 60.821 55.000 12.47 0.00 31.56 4.18
159 160 1.451927 ACATACGCGGGAGTACGGA 60.452 57.895 12.47 0.00 0.00 4.69
160 161 1.298863 CACATACGCGGGAGTACGG 60.299 63.158 12.47 0.00 0.00 4.02
161 162 1.298863 CCACATACGCGGGAGTACG 60.299 63.158 12.47 0.00 0.00 3.67
162 163 0.174162 AACCACATACGCGGGAGTAC 59.826 55.000 12.47 0.00 0.00 2.73
163 164 0.896923 AAACCACATACGCGGGAGTA 59.103 50.000 12.47 0.00 0.00 2.59
164 165 0.672401 CAAACCACATACGCGGGAGT 60.672 55.000 12.47 1.76 0.00 3.85
165 166 0.390603 TCAAACCACATACGCGGGAG 60.391 55.000 12.47 0.99 0.00 4.30
166 167 0.250793 ATCAAACCACATACGCGGGA 59.749 50.000 12.47 0.00 0.00 5.14
167 168 1.091537 AATCAAACCACATACGCGGG 58.908 50.000 12.47 3.45 0.00 6.13
168 169 2.160615 TCAAATCAAACCACATACGCGG 59.839 45.455 12.47 0.00 0.00 6.46
169 170 3.463533 TCAAATCAAACCACATACGCG 57.536 42.857 3.53 3.53 0.00 6.01
170 171 4.562394 CCAATCAAATCAAACCACATACGC 59.438 41.667 0.00 0.00 0.00 4.42
171 172 5.948588 TCCAATCAAATCAAACCACATACG 58.051 37.500 0.00 0.00 0.00 3.06
172 173 7.151308 TGTTCCAATCAAATCAAACCACATAC 58.849 34.615 0.00 0.00 0.00 2.39
173 174 7.295322 TGTTCCAATCAAATCAAACCACATA 57.705 32.000 0.00 0.00 0.00 2.29
174 175 6.172136 TGTTCCAATCAAATCAAACCACAT 57.828 33.333 0.00 0.00 0.00 3.21
175 176 5.604758 TGTTCCAATCAAATCAAACCACA 57.395 34.783 0.00 0.00 0.00 4.17
176 177 6.917217 TTTGTTCCAATCAAATCAAACCAC 57.083 33.333 0.00 0.00 31.17 4.16
177 178 9.618890 TTATTTTGTTCCAATCAAATCAAACCA 57.381 25.926 0.00 0.00 35.25 3.67
181 182 8.782144 GCCTTTATTTTGTTCCAATCAAATCAA 58.218 29.630 0.00 0.00 35.25 2.57
182 183 7.390162 GGCCTTTATTTTGTTCCAATCAAATCA 59.610 33.333 0.00 0.00 35.25 2.57
183 184 7.148255 GGGCCTTTATTTTGTTCCAATCAAATC 60.148 37.037 0.84 0.00 35.25 2.17
184 185 6.658816 GGGCCTTTATTTTGTTCCAATCAAAT 59.341 34.615 0.84 0.00 35.25 2.32
185 186 6.000840 GGGCCTTTATTTTGTTCCAATCAAA 58.999 36.000 0.84 0.00 33.76 2.69
186 187 5.555966 GGGCCTTTATTTTGTTCCAATCAA 58.444 37.500 0.84 0.00 0.00 2.57
187 188 4.322349 CGGGCCTTTATTTTGTTCCAATCA 60.322 41.667 0.84 0.00 0.00 2.57
188 189 4.180817 CGGGCCTTTATTTTGTTCCAATC 58.819 43.478 0.84 0.00 0.00 2.67
189 190 3.055458 CCGGGCCTTTATTTTGTTCCAAT 60.055 43.478 0.84 0.00 0.00 3.16
190 191 2.300437 CCGGGCCTTTATTTTGTTCCAA 59.700 45.455 0.84 0.00 0.00 3.53
191 192 1.896465 CCGGGCCTTTATTTTGTTCCA 59.104 47.619 0.84 0.00 0.00 3.53
192 193 1.404986 GCCGGGCCTTTATTTTGTTCC 60.405 52.381 8.12 0.00 0.00 3.62
193 194 1.404986 GGCCGGGCCTTTATTTTGTTC 60.405 52.381 30.86 0.00 46.69 3.18
194 195 0.611200 GGCCGGGCCTTTATTTTGTT 59.389 50.000 30.86 0.00 46.69 2.83
195 196 2.282827 GGCCGGGCCTTTATTTTGT 58.717 52.632 30.86 0.00 46.69 2.83
208 209 2.840467 TTTTAACGGGATGGGGCCGG 62.840 60.000 0.00 0.00 0.00 6.13
209 210 0.753848 ATTTTAACGGGATGGGGCCG 60.754 55.000 0.00 0.00 0.00 6.13
210 211 1.037493 GATTTTAACGGGATGGGGCC 58.963 55.000 0.00 0.00 0.00 5.80
211 212 1.681264 CTGATTTTAACGGGATGGGGC 59.319 52.381 0.00 0.00 0.00 5.80
212 213 2.092103 TCCTGATTTTAACGGGATGGGG 60.092 50.000 0.00 0.00 37.81 4.96
213 214 3.290948 TCCTGATTTTAACGGGATGGG 57.709 47.619 0.00 0.00 37.81 4.00
214 215 5.359576 TCATTTCCTGATTTTAACGGGATGG 59.640 40.000 0.00 0.00 41.62 3.51
215 216 6.449635 TCATTTCCTGATTTTAACGGGATG 57.550 37.500 0.00 0.00 41.62 3.51
227 228 9.175577 TCCTTCCTAATCTAATCATTTCCTGAT 57.824 33.333 0.00 0.00 46.87 2.90
228 229 8.567198 TCCTTCCTAATCTAATCATTTCCTGA 57.433 34.615 0.00 0.00 38.53 3.86
229 230 9.632638 TTTCCTTCCTAATCTAATCATTTCCTG 57.367 33.333 0.00 0.00 0.00 3.86
234 235 9.479549 TGCTTTTTCCTTCCTAATCTAATCATT 57.520 29.630 0.00 0.00 0.00 2.57
235 236 9.479549 TTGCTTTTTCCTTCCTAATCTAATCAT 57.520 29.630 0.00 0.00 0.00 2.45
236 237 8.877864 TTGCTTTTTCCTTCCTAATCTAATCA 57.122 30.769 0.00 0.00 0.00 2.57
263 264 5.508994 CCCACTTCATTTTACGGCTCTTTTT 60.509 40.000 0.00 0.00 0.00 1.94
264 265 4.022329 CCCACTTCATTTTACGGCTCTTTT 60.022 41.667 0.00 0.00 0.00 2.27
265 266 3.506067 CCCACTTCATTTTACGGCTCTTT 59.494 43.478 0.00 0.00 0.00 2.52
266 267 3.081804 CCCACTTCATTTTACGGCTCTT 58.918 45.455 0.00 0.00 0.00 2.85
267 268 2.304761 TCCCACTTCATTTTACGGCTCT 59.695 45.455 0.00 0.00 0.00 4.09
268 269 2.678336 CTCCCACTTCATTTTACGGCTC 59.322 50.000 0.00 0.00 0.00 4.70
269 270 2.711542 CTCCCACTTCATTTTACGGCT 58.288 47.619 0.00 0.00 0.00 5.52
270 271 1.132453 GCTCCCACTTCATTTTACGGC 59.868 52.381 0.00 0.00 0.00 5.68
271 272 2.432444 TGCTCCCACTTCATTTTACGG 58.568 47.619 0.00 0.00 0.00 4.02
272 273 3.181497 CCATGCTCCCACTTCATTTTACG 60.181 47.826 0.00 0.00 0.00 3.18
273 274 4.016444 TCCATGCTCCCACTTCATTTTAC 58.984 43.478 0.00 0.00 0.00 2.01
274 275 4.314522 TCCATGCTCCCACTTCATTTTA 57.685 40.909 0.00 0.00 0.00 1.52
275 276 3.173953 TCCATGCTCCCACTTCATTTT 57.826 42.857 0.00 0.00 0.00 1.82
276 277 2.905415 TCCATGCTCCCACTTCATTT 57.095 45.000 0.00 0.00 0.00 2.32
277 278 2.662866 CATCCATGCTCCCACTTCATT 58.337 47.619 0.00 0.00 0.00 2.57
278 279 1.133575 CCATCCATGCTCCCACTTCAT 60.134 52.381 0.00 0.00 0.00 2.57
279 280 0.256752 CCATCCATGCTCCCACTTCA 59.743 55.000 0.00 0.00 0.00 3.02
280 281 0.466922 CCCATCCATGCTCCCACTTC 60.467 60.000 0.00 0.00 0.00 3.01
281 282 0.920763 TCCCATCCATGCTCCCACTT 60.921 55.000 0.00 0.00 0.00 3.16
282 283 1.308128 TCCCATCCATGCTCCCACT 60.308 57.895 0.00 0.00 0.00 4.00
283 284 1.150081 CTCCCATCCATGCTCCCAC 59.850 63.158 0.00 0.00 0.00 4.61
284 285 2.760378 GCTCCCATCCATGCTCCCA 61.760 63.158 0.00 0.00 0.00 4.37
285 286 2.077842 ATGCTCCCATCCATGCTCCC 62.078 60.000 0.00 0.00 0.00 4.30
286 287 0.894184 CATGCTCCCATCCATGCTCC 60.894 60.000 0.00 0.00 33.27 4.70
287 288 0.109913 TCATGCTCCCATCCATGCTC 59.890 55.000 0.00 0.00 38.89 4.26
288 289 0.110678 CTCATGCTCCCATCCATGCT 59.889 55.000 0.00 0.00 38.89 3.79
289 290 0.894184 CCTCATGCTCCCATCCATGC 60.894 60.000 0.00 0.00 38.89 4.06
290 291 0.769247 TCCTCATGCTCCCATCCATG 59.231 55.000 0.00 0.00 40.05 3.66
291 292 1.065647 CTCCTCATGCTCCCATCCAT 58.934 55.000 0.00 0.00 0.00 3.41
292 293 1.058428 CCTCCTCATGCTCCCATCCA 61.058 60.000 0.00 0.00 0.00 3.41
293 294 0.765903 TCCTCCTCATGCTCCCATCC 60.766 60.000 0.00 0.00 0.00 3.51
294 295 1.072015 CTTCCTCCTCATGCTCCCATC 59.928 57.143 0.00 0.00 0.00 3.51
295 296 1.138568 CTTCCTCCTCATGCTCCCAT 58.861 55.000 0.00 0.00 0.00 4.00
296 297 1.630126 GCTTCCTCCTCATGCTCCCA 61.630 60.000 0.00 0.00 0.00 4.37
297 298 1.148048 GCTTCCTCCTCATGCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
298 299 0.179051 CTGCTTCCTCCTCATGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
299 300 0.179051 CCTGCTTCCTCCTCATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
300 301 1.913722 CCTGCTTCCTCCTCATGCT 59.086 57.895 0.00 0.00 0.00 3.79
301 302 1.823041 GCCTGCTTCCTCCTCATGC 60.823 63.158 0.00 0.00 0.00 4.06
302 303 0.034767 TTGCCTGCTTCCTCCTCATG 60.035 55.000 0.00 0.00 0.00 3.07
303 304 0.255318 CTTGCCTGCTTCCTCCTCAT 59.745 55.000 0.00 0.00 0.00 2.90
304 305 1.681666 CTTGCCTGCTTCCTCCTCA 59.318 57.895 0.00 0.00 0.00 3.86
305 306 1.748500 GCTTGCCTGCTTCCTCCTC 60.749 63.158 0.00 0.00 0.00 3.71
306 307 2.229928 AGCTTGCCTGCTTCCTCCT 61.230 57.895 0.00 0.00 40.93 3.69
307 308 2.045131 CAGCTTGCCTGCTTCCTCC 61.045 63.158 0.00 0.00 41.98 4.30
308 309 2.045131 CCAGCTTGCCTGCTTCCTC 61.045 63.158 0.00 0.00 41.98 3.71
309 310 1.860944 ATCCAGCTTGCCTGCTTCCT 61.861 55.000 0.00 0.00 41.98 3.36
310 311 1.379576 ATCCAGCTTGCCTGCTTCC 60.380 57.895 0.00 0.00 41.98 3.46
311 312 1.382692 GGATCCAGCTTGCCTGCTTC 61.383 60.000 6.95 0.00 41.98 3.86
312 313 1.379576 GGATCCAGCTTGCCTGCTT 60.380 57.895 6.95 0.00 41.98 3.91
313 314 2.274760 GGATCCAGCTTGCCTGCT 59.725 61.111 6.95 0.00 45.18 4.24
314 315 2.119655 CAGGATCCAGCTTGCCTGC 61.120 63.158 15.82 0.00 41.17 4.85
315 316 4.237445 CAGGATCCAGCTTGCCTG 57.763 61.111 15.82 6.54 41.62 4.85
316 317 0.835941 CTACAGGATCCAGCTTGCCT 59.164 55.000 15.82 0.00 0.00 4.75
317 318 0.817229 GCTACAGGATCCAGCTTGCC 60.817 60.000 15.82 0.00 32.46 4.52
318 319 0.817229 GGCTACAGGATCCAGCTTGC 60.817 60.000 19.02 13.23 35.60 4.01
319 320 0.835941 AGGCTACAGGATCCAGCTTG 59.164 55.000 19.02 9.43 35.60 4.01
320 321 2.324541 CTAGGCTACAGGATCCAGCTT 58.675 52.381 19.02 15.22 35.60 3.74
321 322 1.219213 ACTAGGCTACAGGATCCAGCT 59.781 52.381 19.02 9.90 35.60 4.24
322 323 1.342819 CACTAGGCTACAGGATCCAGC 59.657 57.143 15.82 14.21 34.48 4.85
323 324 1.967066 CCACTAGGCTACAGGATCCAG 59.033 57.143 15.82 8.89 0.00 3.86
324 325 1.573857 TCCACTAGGCTACAGGATCCA 59.426 52.381 15.82 0.00 33.74 3.41
325 326 1.964933 GTCCACTAGGCTACAGGATCC 59.035 57.143 2.48 2.48 33.74 3.36
326 327 1.964933 GGTCCACTAGGCTACAGGATC 59.035 57.143 12.01 8.71 33.74 3.36
327 328 1.576272 AGGTCCACTAGGCTACAGGAT 59.424 52.381 12.01 0.00 33.74 3.24
328 329 1.008403 AGGTCCACTAGGCTACAGGA 58.992 55.000 6.18 6.18 33.74 3.86
329 330 1.867363 AAGGTCCACTAGGCTACAGG 58.133 55.000 0.00 0.00 33.74 4.00
330 331 3.515901 AGAAAAGGTCCACTAGGCTACAG 59.484 47.826 0.00 0.00 33.74 2.74
331 332 3.517612 AGAAAAGGTCCACTAGGCTACA 58.482 45.455 0.00 0.00 33.74 2.74
332 333 4.710865 AGTAGAAAAGGTCCACTAGGCTAC 59.289 45.833 0.00 0.00 33.74 3.58
333 334 4.944177 AGTAGAAAAGGTCCACTAGGCTA 58.056 43.478 0.00 0.00 33.74 3.93
334 335 3.792515 AGTAGAAAAGGTCCACTAGGCT 58.207 45.455 0.00 0.00 33.74 4.58
335 336 4.554960 AAGTAGAAAAGGTCCACTAGGC 57.445 45.455 0.00 0.00 33.74 3.93
336 337 6.770542 AGAAAAGTAGAAAAGGTCCACTAGG 58.229 40.000 0.00 0.00 0.00 3.02
337 338 7.546316 GCTAGAAAAGTAGAAAAGGTCCACTAG 59.454 40.741 0.00 0.00 0.00 2.57
338 339 7.234988 AGCTAGAAAAGTAGAAAAGGTCCACTA 59.765 37.037 0.00 0.00 0.00 2.74
339 340 6.043358 AGCTAGAAAAGTAGAAAAGGTCCACT 59.957 38.462 0.00 0.00 0.00 4.00
340 341 6.231951 AGCTAGAAAAGTAGAAAAGGTCCAC 58.768 40.000 0.00 0.00 0.00 4.02
341 342 6.435292 AGCTAGAAAAGTAGAAAAGGTCCA 57.565 37.500 0.00 0.00 0.00 4.02
342 343 5.875910 GGAGCTAGAAAAGTAGAAAAGGTCC 59.124 44.000 0.00 0.00 41.35 4.46
343 344 6.703319 AGGAGCTAGAAAAGTAGAAAAGGTC 58.297 40.000 0.00 0.00 0.00 3.85
344 345 6.689663 AGGAGCTAGAAAAGTAGAAAAGGT 57.310 37.500 0.00 0.00 0.00 3.50
345 346 9.674068 ATTAAGGAGCTAGAAAAGTAGAAAAGG 57.326 33.333 0.00 0.00 0.00 3.11
347 348 9.449719 CCATTAAGGAGCTAGAAAAGTAGAAAA 57.550 33.333 0.00 0.00 41.22 2.29
348 349 8.047310 CCCATTAAGGAGCTAGAAAAGTAGAAA 58.953 37.037 0.00 0.00 41.22 2.52
349 350 7.565680 CCCATTAAGGAGCTAGAAAAGTAGAA 58.434 38.462 0.00 0.00 41.22 2.10
350 351 6.408206 GCCCATTAAGGAGCTAGAAAAGTAGA 60.408 42.308 0.00 0.00 41.22 2.59
351 352 5.760743 GCCCATTAAGGAGCTAGAAAAGTAG 59.239 44.000 0.00 0.00 41.22 2.57
352 353 5.397559 GGCCCATTAAGGAGCTAGAAAAGTA 60.398 44.000 0.00 0.00 41.22 2.24
353 354 4.527944 GCCCATTAAGGAGCTAGAAAAGT 58.472 43.478 0.00 0.00 41.22 2.66
430 431 0.750182 AGAGGAGACTGTAGCCGCTC 60.750 60.000 0.00 0.00 44.43 5.03
450 451 0.106719 CGGCCCATTTGGTCAGGTAT 60.107 55.000 0.00 0.00 39.41 2.73
455 456 0.760945 AAAACCGGCCCATTTGGTCA 60.761 50.000 0.00 0.00 39.41 4.02
456 457 0.394938 AAAAACCGGCCCATTTGGTC 59.605 50.000 0.00 0.00 34.11 4.02
457 458 2.534038 AAAAACCGGCCCATTTGGT 58.466 47.368 0.00 0.00 37.68 3.67
506 507 4.020617 TGCCTGGCCCAAGACGAG 62.021 66.667 17.53 0.00 0.00 4.18
507 508 4.329545 GTGCCTGGCCCAAGACGA 62.330 66.667 17.53 0.00 0.00 4.20
522 523 4.770102 CGTTTAGCGCGTGCCGTG 62.770 66.667 19.02 0.00 44.31 4.94
609 610 0.524414 AAAACTTAATCGGGCCGTGC 59.476 50.000 27.32 0.00 0.00 5.34
636 637 9.555727 GTTGAGCCATATATAGGTGTAGAAAAA 57.444 33.333 0.00 0.00 0.00 1.94
637 638 8.710239 TGTTGAGCCATATATAGGTGTAGAAAA 58.290 33.333 0.00 0.00 0.00 2.29
638 639 8.257602 TGTTGAGCCATATATAGGTGTAGAAA 57.742 34.615 0.00 0.00 0.00 2.52
639 640 7.849322 TGTTGAGCCATATATAGGTGTAGAA 57.151 36.000 0.00 0.00 0.00 2.10
640 641 7.454694 ACATGTTGAGCCATATATAGGTGTAGA 59.545 37.037 0.00 0.00 0.00 2.59
641 642 7.615403 ACATGTTGAGCCATATATAGGTGTAG 58.385 38.462 0.00 0.00 0.00 2.74
642 643 7.553504 ACATGTTGAGCCATATATAGGTGTA 57.446 36.000 0.00 0.00 0.00 2.90
643 644 6.439636 ACATGTTGAGCCATATATAGGTGT 57.560 37.500 0.00 0.00 0.00 4.16
644 645 8.846943 TTTACATGTTGAGCCATATATAGGTG 57.153 34.615 2.30 0.00 0.00 4.00
645 646 9.860650 TTTTTACATGTTGAGCCATATATAGGT 57.139 29.630 2.30 0.00 0.00 3.08
650 651 8.792633 GCCTATTTTTACATGTTGAGCCATATA 58.207 33.333 2.30 0.00 0.00 0.86
651 652 7.506938 AGCCTATTTTTACATGTTGAGCCATAT 59.493 33.333 2.30 0.00 0.00 1.78
652 653 6.833416 AGCCTATTTTTACATGTTGAGCCATA 59.167 34.615 2.30 0.00 0.00 2.74
653 654 5.658190 AGCCTATTTTTACATGTTGAGCCAT 59.342 36.000 2.30 0.00 0.00 4.40
654 655 5.016173 AGCCTATTTTTACATGTTGAGCCA 58.984 37.500 2.30 0.00 0.00 4.75
655 656 5.582689 AGCCTATTTTTACATGTTGAGCC 57.417 39.130 2.30 0.00 0.00 4.70
656 657 8.980143 TTTTAGCCTATTTTTACATGTTGAGC 57.020 30.769 2.30 0.00 0.00 4.26
658 659 9.400638 CGTTTTTAGCCTATTTTTACATGTTGA 57.599 29.630 2.30 0.00 0.00 3.18
659 660 8.159709 GCGTTTTTAGCCTATTTTTACATGTTG 58.840 33.333 2.30 0.00 0.00 3.33
660 661 8.085909 AGCGTTTTTAGCCTATTTTTACATGTT 58.914 29.630 2.30 0.00 34.64 2.71
661 662 7.599171 AGCGTTTTTAGCCTATTTTTACATGT 58.401 30.769 2.69 2.69 34.64 3.21
662 663 7.753132 TGAGCGTTTTTAGCCTATTTTTACATG 59.247 33.333 0.00 0.00 34.64 3.21
663 664 7.822658 TGAGCGTTTTTAGCCTATTTTTACAT 58.177 30.769 0.00 0.00 34.64 2.29
664 665 7.040961 ACTGAGCGTTTTTAGCCTATTTTTACA 60.041 33.333 0.00 0.00 34.64 2.41
665 666 7.270579 CACTGAGCGTTTTTAGCCTATTTTTAC 59.729 37.037 0.00 0.00 34.64 2.01
666 667 7.302524 CACTGAGCGTTTTTAGCCTATTTTTA 58.697 34.615 0.00 0.00 34.64 1.52
667 668 6.149633 CACTGAGCGTTTTTAGCCTATTTTT 58.850 36.000 0.00 0.00 34.64 1.94
668 669 5.699839 CACTGAGCGTTTTTAGCCTATTTT 58.300 37.500 0.00 0.00 34.64 1.82
669 670 4.379499 GCACTGAGCGTTTTTAGCCTATTT 60.379 41.667 0.00 0.00 34.64 1.40
670 671 3.127030 GCACTGAGCGTTTTTAGCCTATT 59.873 43.478 0.00 0.00 34.64 1.73
671 672 2.678336 GCACTGAGCGTTTTTAGCCTAT 59.322 45.455 0.00 0.00 34.64 2.57
672 673 2.073816 GCACTGAGCGTTTTTAGCCTA 58.926 47.619 0.00 0.00 34.64 3.93
673 674 0.875059 GCACTGAGCGTTTTTAGCCT 59.125 50.000 0.00 0.00 34.64 4.58
674 675 3.384702 GCACTGAGCGTTTTTAGCC 57.615 52.632 0.00 0.00 34.64 3.93
684 685 4.806247 AGTCTATTATTTGACGCACTGAGC 59.194 41.667 0.00 0.00 38.16 4.26
685 686 6.036470 TCAGTCTATTATTTGACGCACTGAG 58.964 40.000 0.00 0.00 35.29 3.35
686 687 5.961272 TCAGTCTATTATTTGACGCACTGA 58.039 37.500 0.00 0.00 37.32 3.41
687 688 6.647212 TTCAGTCTATTATTTGACGCACTG 57.353 37.500 0.00 0.00 38.16 3.66
688 689 7.667043 TTTTCAGTCTATTATTTGACGCACT 57.333 32.000 0.00 0.00 38.16 4.40
691 692 9.107367 GCATATTTTCAGTCTATTATTTGACGC 57.893 33.333 0.00 0.00 38.16 5.19
692 693 9.306280 CGCATATTTTCAGTCTATTATTTGACG 57.694 33.333 0.00 0.00 38.16 4.35
693 694 9.599322 CCGCATATTTTCAGTCTATTATTTGAC 57.401 33.333 0.00 0.00 0.00 3.18
694 695 8.289618 GCCGCATATTTTCAGTCTATTATTTGA 58.710 33.333 0.00 0.00 0.00 2.69
695 696 7.538678 GGCCGCATATTTTCAGTCTATTATTTG 59.461 37.037 0.00 0.00 0.00 2.32
696 697 7.309194 GGGCCGCATATTTTCAGTCTATTATTT 60.309 37.037 0.00 0.00 0.00 1.40
697 698 6.151144 GGGCCGCATATTTTCAGTCTATTATT 59.849 38.462 0.00 0.00 0.00 1.40
698 699 5.648092 GGGCCGCATATTTTCAGTCTATTAT 59.352 40.000 0.00 0.00 0.00 1.28
699 700 5.001232 GGGCCGCATATTTTCAGTCTATTA 58.999 41.667 0.00 0.00 0.00 0.98
700 701 3.821033 GGGCCGCATATTTTCAGTCTATT 59.179 43.478 0.00 0.00 0.00 1.73
701 702 3.181445 TGGGCCGCATATTTTCAGTCTAT 60.181 43.478 0.00 0.00 0.00 1.98
702 703 2.171659 TGGGCCGCATATTTTCAGTCTA 59.828 45.455 0.00 0.00 0.00 2.59
703 704 1.064758 TGGGCCGCATATTTTCAGTCT 60.065 47.619 0.00 0.00 0.00 3.24
704 705 1.388547 TGGGCCGCATATTTTCAGTC 58.611 50.000 0.00 0.00 0.00 3.51
705 706 1.956477 GATGGGCCGCATATTTTCAGT 59.044 47.619 6.69 0.00 0.00 3.41
706 707 1.955778 TGATGGGCCGCATATTTTCAG 59.044 47.619 6.69 0.00 0.00 3.02
707 708 2.064434 TGATGGGCCGCATATTTTCA 57.936 45.000 6.69 0.00 0.00 2.69
708 709 2.927871 GCATGATGGGCCGCATATTTTC 60.928 50.000 10.84 0.00 0.00 2.29
709 710 1.001181 GCATGATGGGCCGCATATTTT 59.999 47.619 10.84 0.00 0.00 1.82
710 711 0.604578 GCATGATGGGCCGCATATTT 59.395 50.000 10.84 0.00 0.00 1.40
711 712 0.251474 AGCATGATGGGCCGCATATT 60.251 50.000 10.84 1.25 0.00 1.28
712 713 0.620030 TAGCATGATGGGCCGCATAT 59.380 50.000 10.84 6.41 0.00 1.78
713 714 0.399833 TTAGCATGATGGGCCGCATA 59.600 50.000 10.84 0.00 0.00 3.14
714 715 0.467844 TTTAGCATGATGGGCCGCAT 60.468 50.000 6.43 6.43 0.00 4.73
715 716 1.077140 TTTAGCATGATGGGCCGCA 60.077 52.632 0.00 0.00 0.00 5.69
716 717 1.360192 GTTTAGCATGATGGGCCGC 59.640 57.895 0.00 0.00 0.00 6.53
717 718 1.648720 CGTTTAGCATGATGGGCCG 59.351 57.895 0.00 0.00 0.00 6.13
718 719 1.455383 CCCGTTTAGCATGATGGGCC 61.455 60.000 0.00 0.00 35.42 5.80
719 720 2.032981 CCCGTTTAGCATGATGGGC 58.967 57.895 0.00 0.00 35.42 5.36
720 721 1.455383 GGCCCGTTTAGCATGATGGG 61.455 60.000 0.00 0.19 43.68 4.00
721 722 0.751277 TGGCCCGTTTAGCATGATGG 60.751 55.000 0.00 0.00 0.00 3.51
722 723 1.102154 TTGGCCCGTTTAGCATGATG 58.898 50.000 0.00 0.00 0.00 3.07
723 724 1.102978 GTTGGCCCGTTTAGCATGAT 58.897 50.000 0.00 0.00 0.00 2.45
724 725 1.302383 CGTTGGCCCGTTTAGCATGA 61.302 55.000 0.00 0.00 0.00 3.07
725 726 1.136565 CGTTGGCCCGTTTAGCATG 59.863 57.895 0.00 0.00 0.00 4.06
726 727 1.302993 ACGTTGGCCCGTTTAGCAT 60.303 52.632 0.00 0.00 37.96 3.79
727 728 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
728 729 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
729 730 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
743 744 1.070821 GTTAGTAAACGGGTCGGCAC 58.929 55.000 0.00 0.00 0.00 5.01
744 745 0.968405 AGTTAGTAAACGGGTCGGCA 59.032 50.000 0.00 0.00 40.73 5.69
745 746 1.067635 TCAGTTAGTAAACGGGTCGGC 60.068 52.381 0.00 0.00 40.73 5.54
746 747 2.872370 CTCAGTTAGTAAACGGGTCGG 58.128 52.381 0.00 0.00 40.73 4.79
747 748 2.257034 GCTCAGTTAGTAAACGGGTCG 58.743 52.381 0.00 0.00 40.73 4.79
748 749 2.614779 GGCTCAGTTAGTAAACGGGTC 58.385 52.381 0.00 0.00 40.73 4.46
749 750 1.067354 CGGCTCAGTTAGTAAACGGGT 60.067 52.381 0.00 0.00 40.73 5.28
750 751 1.067354 ACGGCTCAGTTAGTAAACGGG 60.067 52.381 0.00 0.00 40.73 5.28
751 752 1.990563 CACGGCTCAGTTAGTAAACGG 59.009 52.381 0.00 0.00 40.73 4.44
752 753 1.389106 GCACGGCTCAGTTAGTAAACG 59.611 52.381 0.00 0.00 40.73 3.60
753 754 1.730612 GGCACGGCTCAGTTAGTAAAC 59.269 52.381 0.00 0.00 35.72 2.01
754 755 1.345089 TGGCACGGCTCAGTTAGTAAA 59.655 47.619 0.00 0.00 0.00 2.01
755 756 0.970640 TGGCACGGCTCAGTTAGTAA 59.029 50.000 0.00 0.00 0.00 2.24
756 757 0.530744 CTGGCACGGCTCAGTTAGTA 59.469 55.000 0.00 0.00 0.00 1.82
757 758 1.293498 CTGGCACGGCTCAGTTAGT 59.707 57.895 0.00 0.00 0.00 2.24
758 759 1.448540 CCTGGCACGGCTCAGTTAG 60.449 63.158 10.80 0.00 0.00 2.34
759 760 2.662596 CCTGGCACGGCTCAGTTA 59.337 61.111 10.80 0.00 0.00 2.24
760 761 4.335647 CCCTGGCACGGCTCAGTT 62.336 66.667 0.00 0.00 0.00 3.16
807 808 2.027561 TGATTACTATATGGGGCCGTGC 60.028 50.000 0.00 0.00 0.00 5.34
808 809 3.973206 TGATTACTATATGGGGCCGTG 57.027 47.619 0.00 0.00 0.00 4.94
809 810 3.370527 GCATGATTACTATATGGGGCCGT 60.371 47.826 0.00 0.00 0.00 5.68
810 811 3.206150 GCATGATTACTATATGGGGCCG 58.794 50.000 0.00 0.00 0.00 6.13
811 812 3.555966 GGCATGATTACTATATGGGGCC 58.444 50.000 0.00 0.00 0.00 5.80
812 813 3.203040 AGGGCATGATTACTATATGGGGC 59.797 47.826 0.00 0.00 0.00 5.80
813 814 4.385643 CCAGGGCATGATTACTATATGGGG 60.386 50.000 0.00 0.00 0.00 4.96
814 815 4.785301 CCAGGGCATGATTACTATATGGG 58.215 47.826 0.00 0.00 0.00 4.00
815 816 4.202441 GCCAGGGCATGATTACTATATGG 58.798 47.826 5.20 0.00 41.49 2.74
816 817 3.873361 CGCCAGGGCATGATTACTATATG 59.127 47.826 11.42 0.00 42.06 1.78
817 818 3.118261 CCGCCAGGGCATGATTACTATAT 60.118 47.826 11.42 0.00 42.06 0.86
818 819 2.236146 CCGCCAGGGCATGATTACTATA 59.764 50.000 11.42 0.00 42.06 1.31
819 820 1.003580 CCGCCAGGGCATGATTACTAT 59.996 52.381 11.42 0.00 42.06 2.12
820 821 0.396435 CCGCCAGGGCATGATTACTA 59.604 55.000 11.42 0.00 42.06 1.82
821 822 1.149174 CCGCCAGGGCATGATTACT 59.851 57.895 11.42 0.00 42.06 2.24
822 823 3.749981 CCGCCAGGGCATGATTAC 58.250 61.111 11.42 0.00 42.06 1.89
846 847 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
847 848 2.895372 GTAATCGTGCCTGGCCCG 60.895 66.667 17.67 17.67 0.00 6.13
848 849 2.660258 ATCGTAATCGTGCCTGGCCC 62.660 60.000 17.53 2.94 38.33 5.80
849 850 1.227556 ATCGTAATCGTGCCTGGCC 60.228 57.895 17.53 6.66 38.33 5.36
850 851 1.498865 CCATCGTAATCGTGCCTGGC 61.499 60.000 12.87 12.87 38.33 4.85
851 852 0.880278 CCCATCGTAATCGTGCCTGG 60.880 60.000 0.00 0.00 38.33 4.45
852 853 1.498865 GCCCATCGTAATCGTGCCTG 61.499 60.000 0.00 0.00 38.33 4.85
853 854 1.227556 GCCCATCGTAATCGTGCCT 60.228 57.895 0.00 0.00 38.33 4.75
854 855 2.251642 GGCCCATCGTAATCGTGCC 61.252 63.158 0.00 0.00 38.33 5.01
855 856 2.594962 CGGCCCATCGTAATCGTGC 61.595 63.158 0.00 0.00 38.33 5.34
856 857 1.954146 CCGGCCCATCGTAATCGTG 60.954 63.158 0.00 0.00 38.33 4.35
857 858 2.420043 CCGGCCCATCGTAATCGT 59.580 61.111 0.00 0.00 38.33 3.73
858 859 2.357034 CCCGGCCCATCGTAATCG 60.357 66.667 0.00 0.00 38.55 3.34
859 860 2.668550 GCCCGGCCCATCGTAATC 60.669 66.667 0.00 0.00 0.00 1.75
860 861 4.265056 GGCCCGGCCCATCGTAAT 62.265 66.667 18.83 0.00 44.06 1.89
895 896 1.752694 CCATACCTGGCCAAACGGG 60.753 63.158 7.01 7.12 42.81 5.28
896 897 3.918544 CCATACCTGGCCAAACGG 58.081 61.111 7.01 7.56 35.23 4.44
905 906 2.432510 GAGACCAAGGAGACCATACCTG 59.567 54.545 0.00 0.00 36.56 4.00
906 907 2.316372 AGAGACCAAGGAGACCATACCT 59.684 50.000 0.00 0.00 38.23 3.08
907 908 2.696187 GAGAGACCAAGGAGACCATACC 59.304 54.545 0.00 0.00 0.00 2.73
912 913 1.828595 GGAAGAGAGACCAAGGAGACC 59.171 57.143 0.00 0.00 0.00 3.85
1206 1211 1.153349 GAGGTGGTGGAAGGCGATC 60.153 63.158 0.00 0.00 0.00 3.69
1719 1733 2.577059 CCGATGCAGTACACCGGT 59.423 61.111 0.00 0.00 35.83 5.28
2255 2297 2.039624 TCTCCACCTCCTCAGCCC 59.960 66.667 0.00 0.00 0.00 5.19
2273 2315 0.393537 CATGACCAGCCTCACCTTCC 60.394 60.000 0.00 0.00 0.00 3.46
2389 2431 0.667487 TGCTTCAAGAACTCGGCGAG 60.667 55.000 33.42 33.42 35.52 5.03
2407 2449 2.897436 TCATGTGGAGAGCTTCGAATG 58.103 47.619 0.00 0.00 0.00 2.67
2421 2463 4.696899 ATCTTGTGTGCTTGATCATGTG 57.303 40.909 10.05 0.00 0.00 3.21
2457 2500 5.653769 ACCATTAGAATCACACATTCCAAGG 59.346 40.000 0.00 0.00 0.00 3.61
2515 2562 3.436704 ACATCATCTTAACACCACAAGCG 59.563 43.478 0.00 0.00 0.00 4.68
2524 2571 8.862325 ATAACTTTCACCACATCATCTTAACA 57.138 30.769 0.00 0.00 0.00 2.41
2529 2576 9.277783 GCTATTATAACTTTCACCACATCATCT 57.722 33.333 0.00 0.00 0.00 2.90
2530 2577 9.277783 AGCTATTATAACTTTCACCACATCATC 57.722 33.333 0.00 0.00 0.00 2.92
2531 2578 9.060347 CAGCTATTATAACTTTCACCACATCAT 57.940 33.333 0.00 0.00 0.00 2.45
2532 2579 7.012327 GCAGCTATTATAACTTTCACCACATCA 59.988 37.037 0.00 0.00 0.00 3.07
2533 2580 7.355778 GCAGCTATTATAACTTTCACCACATC 58.644 38.462 0.00 0.00 0.00 3.06
2534 2581 6.263168 GGCAGCTATTATAACTTTCACCACAT 59.737 38.462 0.00 0.00 0.00 3.21
2535 2582 5.588648 GGCAGCTATTATAACTTTCACCACA 59.411 40.000 0.00 0.00 0.00 4.17
2536 2583 5.823045 AGGCAGCTATTATAACTTTCACCAC 59.177 40.000 0.00 0.00 0.00 4.16
2537 2584 6.001449 AGGCAGCTATTATAACTTTCACCA 57.999 37.500 0.00 0.00 0.00 4.17
2538 2585 6.055588 TGAGGCAGCTATTATAACTTTCACC 58.944 40.000 0.00 0.00 0.00 4.02
2539 2586 7.183580 CTGAGGCAGCTATTATAACTTTCAC 57.816 40.000 0.00 0.00 0.00 3.18
2574 2623 7.360185 GCACAGAGCTATGACATATCATTTCAG 60.360 40.741 16.75 0.00 45.25 3.02
2602 2651 2.787994 AGCTTCAGTGTGGAATTCAGG 58.212 47.619 7.93 0.00 0.00 3.86
2685 2746 6.906157 ATAACCATAGCAATTCATCAAGGG 57.094 37.500 0.00 0.00 0.00 3.95
2705 2773 8.282455 TGCCACCAGTAAAATCGAAATAATAA 57.718 30.769 0.00 0.00 0.00 1.40
2715 2783 3.427161 GCTCATGCCACCAGTAAAATC 57.573 47.619 0.00 0.00 0.00 2.17
2783 2851 1.270094 TGAGTAGGTTGTGCTTCCGTG 60.270 52.381 0.00 0.00 0.00 4.94
2860 2928 5.771469 TGCAATGGACAAAAACTGACATAG 58.229 37.500 0.00 0.00 0.00 2.23
2892 2962 3.008485 ACAGGAGGCCAAGAAAAGACTAG 59.992 47.826 5.01 0.00 0.00 2.57
2915 2985 3.296322 TGAAAATGGTTTGCGTGGATC 57.704 42.857 0.00 0.00 0.00 3.36
2965 3035 5.010112 TCAGTCTAGCTTATATGCTCCACAC 59.990 44.000 15.80 8.98 42.97 3.82
3043 3131 1.804601 CAACAGAGATGTGCTCAGCA 58.195 50.000 6.81 0.00 46.45 4.41
3044 3132 0.447011 GCAACAGAGATGTGCTCAGC 59.553 55.000 0.00 0.00 46.45 4.26
3045 3133 1.732809 CAGCAACAGAGATGTGCTCAG 59.267 52.381 0.00 0.00 46.45 3.35
3046 3134 1.345415 TCAGCAACAGAGATGTGCTCA 59.655 47.619 0.00 0.00 46.45 4.26
3047 3135 2.090400 TCAGCAACAGAGATGTGCTC 57.910 50.000 0.00 0.00 44.29 4.26
3048 3136 2.556144 TTCAGCAACAGAGATGTGCT 57.444 45.000 0.00 0.00 36.12 4.40
3049 3137 3.499048 CATTTCAGCAACAGAGATGTGC 58.501 45.455 0.00 0.00 0.00 4.57
3050 3138 3.754850 TCCATTTCAGCAACAGAGATGTG 59.245 43.478 0.00 0.00 0.00 3.21
3051 3139 4.025040 TCCATTTCAGCAACAGAGATGT 57.975 40.909 0.00 0.00 0.00 3.06
3052 3140 4.882427 AGATCCATTTCAGCAACAGAGATG 59.118 41.667 0.00 0.00 0.00 2.90
3053 3141 5.113446 AGATCCATTTCAGCAACAGAGAT 57.887 39.130 0.00 0.00 0.00 2.75
3054 3142 4.019950 TGAGATCCATTTCAGCAACAGAGA 60.020 41.667 0.00 0.00 0.00 3.10
3055 3143 4.259356 TGAGATCCATTTCAGCAACAGAG 58.741 43.478 0.00 0.00 0.00 3.35
3056 3144 4.290711 TGAGATCCATTTCAGCAACAGA 57.709 40.909 0.00 0.00 0.00 3.41
3057 3145 4.202020 CCATGAGATCCATTTCAGCAACAG 60.202 45.833 0.00 0.00 31.94 3.16
3058 3146 3.697542 CCATGAGATCCATTTCAGCAACA 59.302 43.478 0.00 0.00 31.94 3.33
3059 3147 3.490419 GCCATGAGATCCATTTCAGCAAC 60.490 47.826 0.00 0.00 31.94 4.17
3078 3166 1.003442 AGCCCTCCTAGTCATGCCA 59.997 57.895 0.00 0.00 0.00 4.92
3086 3174 2.759973 TGCCGTGAGCCCTCCTAG 60.760 66.667 0.00 0.00 42.71 3.02
3152 3251 8.650714 CAAAGAACATTAGGCTCATTAAAAAGC 58.349 33.333 0.00 4.32 37.80 3.51
3266 3366 2.554032 ACCAGCGTTTGATCTTTTCCAG 59.446 45.455 0.00 0.00 0.00 3.86
3282 3382 0.469144 TTTCCCCCACTGAAACCAGC 60.469 55.000 0.00 0.00 35.09 4.85
3299 3399 5.189934 TCCCATTACCAACCACAAAAACTTT 59.810 36.000 0.00 0.00 0.00 2.66
3351 3451 4.301072 TTCAAAGTAGTATGGCCAAGCT 57.699 40.909 10.96 13.86 0.00 3.74
3403 3503 1.480137 GCCGAGATATCAGGATCAGGG 59.520 57.143 18.09 1.68 0.00 4.45
3404 3504 2.166050 CTGCCGAGATATCAGGATCAGG 59.834 54.545 18.09 8.19 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.