Multiple sequence alignment - TraesCS1A01G346600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G346600 chr1A 100.000 3031 0 0 1 3031 533138904 533141934 0.000000e+00 5598.0
1 TraesCS1A01G346600 chr1D 91.161 2240 135 30 796 3014 435748544 435750741 0.000000e+00 2981.0
2 TraesCS1A01G346600 chr1D 79.592 441 62 18 57 482 395349740 395349313 1.060000e-74 291.0
3 TraesCS1A01G346600 chr1D 90.395 177 12 4 472 645 315471097 315470923 8.450000e-56 228.0
4 TraesCS1A01G346600 chr1B 92.431 1440 64 15 930 2349 589060297 589061711 0.000000e+00 2013.0
5 TraesCS1A01G346600 chr1B 89.280 625 49 11 2394 3014 589063146 589063756 0.000000e+00 767.0
6 TraesCS1A01G346600 chr1B 92.982 57 4 0 2347 2403 589062108 589062164 1.940000e-12 84.2
7 TraesCS1A01G346600 chr2D 89.384 471 36 7 14 482 179291400 179291858 5.630000e-162 580.0
8 TraesCS1A01G346600 chr6D 86.653 487 41 8 14 482 97736828 97737308 4.480000e-143 518.0
9 TraesCS1A01G346600 chr6D 92.216 167 9 3 481 645 114715211 114715047 1.820000e-57 233.0
10 TraesCS1A01G346600 chr6D 91.228 171 14 1 478 647 260024678 260024508 6.540000e-57 231.0
11 TraesCS1A01G346600 chr7D 86.279 481 49 9 14 482 594983304 594983779 9.700000e-140 507.0
12 TraesCS1A01G346600 chr7D 88.206 407 25 6 14 401 568602167 568601765 5.920000e-127 464.0
13 TraesCS1A01G346600 chr7D 88.630 387 32 6 20 401 117683703 117683324 7.660000e-126 460.0
14 TraesCS1A01G346600 chr7D 91.279 172 14 1 482 652 593702081 593702252 1.820000e-57 233.0
15 TraesCS1A01G346600 chr4D 89.877 405 23 6 14 400 351676552 351676148 3.490000e-139 505.0
16 TraesCS1A01G346600 chr4D 92.814 167 8 3 481 645 300876713 300876877 3.910000e-59 239.0
17 TraesCS1A01G346600 chr5D 89.216 408 24 5 14 401 532649172 532649579 2.720000e-135 492.0
18 TraesCS1A01G346600 chr5A 85.207 507 37 10 14 482 332573923 332573417 1.260000e-133 486.0
19 TraesCS1A01G346600 chrUn 88.020 409 22 8 11 401 89860164 89860563 2.750000e-125 459.0
20 TraesCS1A01G346600 chr2B 87.745 408 27 9 14 400 160749862 160749457 3.560000e-124 455.0
21 TraesCS1A01G346600 chr2B 82.646 461 50 18 22 474 71729952 71729514 6.130000e-102 381.0
22 TraesCS1A01G346600 chr5B 87.949 390 36 7 14 401 50539198 50539578 1.660000e-122 449.0
23 TraesCS1A01G346600 chr6A 82.687 387 36 5 14 400 14413828 14414183 6.310000e-82 315.0
24 TraesCS1A01G346600 chr6A 91.228 171 14 1 478 647 370675436 370675606 6.540000e-57 231.0
25 TraesCS1A01G346600 chr7A 85.342 307 29 9 179 482 49353611 49353318 1.370000e-78 303.0
26 TraesCS1A01G346600 chr3B 81.143 350 39 17 121 458 414473450 414473116 3.880000e-64 255.0
27 TraesCS1A01G346600 chr3A 94.083 169 9 1 482 650 24028665 24028498 3.880000e-64 255.0
28 TraesCS1A01G346600 chr3D 90.857 175 14 2 473 645 2113245 2113419 1.820000e-57 233.0
29 TraesCS1A01G346600 chr3D 90.751 173 15 1 475 646 148248051 148248223 2.350000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G346600 chr1A 533138904 533141934 3030 False 5598.000000 5598 100.000000 1 3031 1 chr1A.!!$F1 3030
1 TraesCS1A01G346600 chr1D 435748544 435750741 2197 False 2981.000000 2981 91.161000 796 3014 1 chr1D.!!$F1 2218
2 TraesCS1A01G346600 chr1B 589060297 589063756 3459 False 954.733333 2013 91.564333 930 3014 3 chr1B.!!$F1 2084
3 TraesCS1A01G346600 chr5A 332573417 332573923 506 True 486.000000 486 85.207000 14 482 1 chr5A.!!$R1 468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 964 0.169009 TCAGCACAGTCGAGTCGATG 59.831 55.0 19.75 18.47 38.42 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2661 4129 0.039618 GCTTTGGGGGTGAGGATTGA 59.96 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.321653 AGATCTTGCCAACACCGTCC 60.322 55.000 0.00 0.00 0.00 4.79
109 110 4.505217 GCTTCACGTGATGCGGCG 62.505 66.667 32.30 0.51 46.52 6.46
124 125 2.525248 GGCGCGCGAGAATGATGAA 61.525 57.895 37.18 0.00 0.00 2.57
127 128 0.501854 CGCGCGAGAATGATGAAGAG 59.498 55.000 28.94 0.00 0.00 2.85
141 142 5.035556 TGATGAAGAGGAGGAGGAAGAATT 58.964 41.667 0.00 0.00 0.00 2.17
157 158 2.164624 AGAATTGTCTTCGGAGGAGTCG 59.835 50.000 0.00 0.00 0.00 4.18
166 167 1.032794 CGGAGGAGTCGGATGAATCA 58.967 55.000 0.00 0.00 40.91 2.57
170 171 3.118592 GGAGGAGTCGGATGAATCAAAGT 60.119 47.826 0.00 0.00 40.91 2.66
181 182 6.933521 CGGATGAATCAAAGTAAGATGAGGAT 59.066 38.462 0.00 0.00 0.00 3.24
188 189 6.333416 TCAAAGTAAGATGAGGATGAAGACG 58.667 40.000 0.00 0.00 0.00 4.18
208 209 2.416836 CGAGGACGAGGCTTGATTGTTA 60.417 50.000 9.20 0.00 42.66 2.41
211 212 3.941483 AGGACGAGGCTTGATTGTTAATG 59.059 43.478 9.20 0.00 0.00 1.90
214 215 3.119849 ACGAGGCTTGATTGTTAATGTGC 60.120 43.478 9.20 0.00 0.00 4.57
241 242 3.790820 CGTTTGTGTCATGAACTTGGTTG 59.209 43.478 0.00 0.00 0.00 3.77
242 243 4.438065 CGTTTGTGTCATGAACTTGGTTGA 60.438 41.667 0.00 0.00 0.00 3.18
243 244 5.406649 GTTTGTGTCATGAACTTGGTTGAA 58.593 37.500 0.00 0.00 0.00 2.69
244 245 5.850557 TTGTGTCATGAACTTGGTTGAAT 57.149 34.783 0.00 0.00 0.00 2.57
245 246 6.951062 TTGTGTCATGAACTTGGTTGAATA 57.049 33.333 0.00 0.00 0.00 1.75
246 247 6.951062 TGTGTCATGAACTTGGTTGAATAA 57.049 33.333 0.00 0.00 0.00 1.40
272 291 3.387374 TGTGGGCATGAATTTGAACTTGT 59.613 39.130 0.00 0.00 0.00 3.16
275 294 3.006752 GGGCATGAATTTGAACTTGTGGA 59.993 43.478 0.00 0.00 0.00 4.02
276 295 4.502950 GGGCATGAATTTGAACTTGTGGAA 60.503 41.667 0.00 0.00 0.00 3.53
288 307 8.925161 TTGAACTTGTGGAAATGAACTTTTAG 57.075 30.769 0.00 0.00 0.00 1.85
310 329 5.640732 AGTCATCAACTTGTTTGTGTGAAC 58.359 37.500 0.00 0.00 33.03 3.18
385 406 2.491291 TGCAACATATGGCATGCGT 58.509 47.368 12.44 5.48 41.61 5.24
417 456 1.003223 GCGCCCGCGATAAATTTTAGT 60.003 47.619 14.24 0.00 42.83 2.24
418 457 2.635444 CGCCCGCGATAAATTTTAGTG 58.365 47.619 8.23 0.00 42.83 2.74
419 458 2.381589 GCCCGCGATAAATTTTAGTGC 58.618 47.619 8.23 5.69 0.00 4.40
425 464 3.035942 CGATAAATTTTAGTGCGGCTGC 58.964 45.455 11.65 11.65 43.20 5.25
428 467 1.533625 AATTTTAGTGCGGCTGCTGA 58.466 45.000 20.27 0.23 43.34 4.26
482 521 3.470267 GCGCGCTGCAAAGTAGTA 58.530 55.556 26.67 0.00 45.45 1.82
483 522 1.058903 GCGCGCTGCAAAGTAGTAC 59.941 57.895 26.67 0.00 45.45 2.73
484 523 1.352156 GCGCGCTGCAAAGTAGTACT 61.352 55.000 26.67 0.00 45.45 2.73
485 524 0.640768 CGCGCTGCAAAGTAGTACTC 59.359 55.000 5.56 0.00 0.00 2.59
486 525 1.000145 GCGCTGCAAAGTAGTACTCC 59.000 55.000 2.58 0.00 0.00 3.85
487 526 1.641577 CGCTGCAAAGTAGTACTCCC 58.358 55.000 2.58 0.00 0.00 4.30
488 527 1.204941 CGCTGCAAAGTAGTACTCCCT 59.795 52.381 2.58 0.00 0.00 4.20
489 528 2.735762 CGCTGCAAAGTAGTACTCCCTC 60.736 54.545 2.58 0.00 0.00 4.30
490 529 2.418884 GCTGCAAAGTAGTACTCCCTCC 60.419 54.545 2.58 0.00 0.00 4.30
491 530 1.822990 TGCAAAGTAGTACTCCCTCCG 59.177 52.381 2.58 0.00 0.00 4.63
492 531 1.823610 GCAAAGTAGTACTCCCTCCGT 59.176 52.381 2.58 0.00 0.00 4.69
493 532 2.233186 GCAAAGTAGTACTCCCTCCGTT 59.767 50.000 2.58 0.00 0.00 4.44
494 533 3.306571 GCAAAGTAGTACTCCCTCCGTTT 60.307 47.826 2.58 0.00 0.00 3.60
495 534 4.492611 CAAAGTAGTACTCCCTCCGTTTC 58.507 47.826 2.58 0.00 0.00 2.78
496 535 2.732763 AGTAGTACTCCCTCCGTTTCC 58.267 52.381 0.00 0.00 0.00 3.13
497 536 2.042162 AGTAGTACTCCCTCCGTTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
498 537 2.019807 AGTACTCCCTCCGTTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
499 538 2.332117 AGTACTCCCTCCGTTTCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
500 539 2.910977 AGTACTCCCTCCGTTTCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
501 540 4.098894 AGTACTCCCTCCGTTTCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
502 541 4.720273 AGTACTCCCTCCGTTTCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
503 542 4.586306 ACTCCCTCCGTTTCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
504 543 4.930696 ACTCCCTCCGTTTCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
505 544 4.705023 ACTCCCTCCGTTTCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
506 545 4.668636 TCCCTCCGTTTCCAAATATTTGT 58.331 39.130 23.24 0.00 36.45 2.83
507 546 4.703093 TCCCTCCGTTTCCAAATATTTGTC 59.297 41.667 23.24 11.68 36.45 3.18
508 547 4.705023 CCCTCCGTTTCCAAATATTTGTCT 59.295 41.667 23.24 0.00 36.45 3.41
509 548 5.185056 CCCTCCGTTTCCAAATATTTGTCTT 59.815 40.000 23.24 0.00 36.45 3.01
510 549 6.295067 CCCTCCGTTTCCAAATATTTGTCTTT 60.295 38.462 23.24 0.00 36.45 2.52
511 550 7.151976 CCTCCGTTTCCAAATATTTGTCTTTT 58.848 34.615 23.24 0.00 36.45 2.27
512 551 7.655732 CCTCCGTTTCCAAATATTTGTCTTTTT 59.344 33.333 23.24 0.00 36.45 1.94
513 552 9.685828 CTCCGTTTCCAAATATTTGTCTTTTTA 57.314 29.630 23.24 6.60 36.45 1.52
514 553 9.685828 TCCGTTTCCAAATATTTGTCTTTTTAG 57.314 29.630 23.24 8.49 36.45 1.85
515 554 9.685828 CCGTTTCCAAATATTTGTCTTTTTAGA 57.314 29.630 23.24 10.41 36.45 2.10
584 623 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
585 624 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
586 625 8.940952 AGAGTGTAGATTCACTTATTTTGCTTC 58.059 33.333 0.98 0.00 46.81 3.86
587 626 7.743104 AGTGTAGATTCACTTATTTTGCTTCG 58.257 34.615 0.00 0.00 44.92 3.79
588 627 7.387948 AGTGTAGATTCACTTATTTTGCTTCGT 59.612 33.333 0.00 0.00 44.92 3.85
589 628 8.653338 GTGTAGATTCACTTATTTTGCTTCGTA 58.347 33.333 0.00 0.00 35.68 3.43
590 629 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
591 630 9.638300 GTAGATTCACTTATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
592 631 7.189512 AGATTCACTTATTTTGCTTCGTATGC 58.810 34.615 0.00 0.00 0.00 3.14
593 632 5.871465 TCACTTATTTTGCTTCGTATGCA 57.129 34.783 0.00 0.00 38.80 3.96
594 633 5.868257 TCACTTATTTTGCTTCGTATGCAG 58.132 37.500 0.00 0.00 41.71 4.41
595 634 5.411361 TCACTTATTTTGCTTCGTATGCAGT 59.589 36.000 0.00 0.00 41.71 4.40
596 635 5.734498 CACTTATTTTGCTTCGTATGCAGTC 59.266 40.000 0.00 0.00 41.71 3.51
597 636 5.411361 ACTTATTTTGCTTCGTATGCAGTCA 59.589 36.000 0.00 0.00 41.71 3.41
598 637 3.536158 TTTTGCTTCGTATGCAGTCAC 57.464 42.857 0.00 0.00 41.71 3.67
599 638 2.455674 TTGCTTCGTATGCAGTCACT 57.544 45.000 0.00 0.00 41.71 3.41
600 639 2.455674 TGCTTCGTATGCAGTCACTT 57.544 45.000 0.00 0.00 35.31 3.16
601 640 3.586100 TGCTTCGTATGCAGTCACTTA 57.414 42.857 0.00 0.00 35.31 2.24
602 641 4.123497 TGCTTCGTATGCAGTCACTTAT 57.877 40.909 0.00 0.00 35.31 1.73
603 642 4.503910 TGCTTCGTATGCAGTCACTTATT 58.496 39.130 0.00 0.00 35.31 1.40
604 643 5.656480 TGCTTCGTATGCAGTCACTTATTA 58.344 37.500 0.00 0.00 35.31 0.98
605 644 6.103330 TGCTTCGTATGCAGTCACTTATTAA 58.897 36.000 0.00 0.00 35.31 1.40
606 645 6.592220 TGCTTCGTATGCAGTCACTTATTAAA 59.408 34.615 0.00 0.00 35.31 1.52
607 646 7.118535 TGCTTCGTATGCAGTCACTTATTAAAA 59.881 33.333 0.00 0.00 35.31 1.52
608 647 8.122952 GCTTCGTATGCAGTCACTTATTAAAAT 58.877 33.333 0.00 0.00 0.00 1.82
609 648 9.638300 CTTCGTATGCAGTCACTTATTAAAATC 57.362 33.333 0.00 0.00 0.00 2.17
610 649 8.942338 TCGTATGCAGTCACTTATTAAAATCT 57.058 30.769 0.00 0.00 0.00 2.40
611 650 9.031360 TCGTATGCAGTCACTTATTAAAATCTC 57.969 33.333 0.00 0.00 0.00 2.75
612 651 9.035607 CGTATGCAGTCACTTATTAAAATCTCT 57.964 33.333 0.00 0.00 0.00 3.10
631 670 8.986929 AATCTCTAGAAGGACAAATATTTGGG 57.013 34.615 27.43 8.32 42.34 4.12
632 671 7.749377 TCTCTAGAAGGACAAATATTTGGGA 57.251 36.000 27.43 12.97 42.34 4.37
633 672 8.158025 TCTCTAGAAGGACAAATATTTGGGAA 57.842 34.615 27.43 8.61 42.34 3.97
634 673 8.047310 TCTCTAGAAGGACAAATATTTGGGAAC 58.953 37.037 27.43 15.95 42.34 3.62
635 674 5.897377 AGAAGGACAAATATTTGGGAACG 57.103 39.130 27.43 6.31 42.34 3.95
636 675 4.705023 AGAAGGACAAATATTTGGGAACGG 59.295 41.667 27.43 5.66 42.34 4.44
637 676 4.310022 AGGACAAATATTTGGGAACGGA 57.690 40.909 27.43 0.00 42.34 4.69
638 677 4.270008 AGGACAAATATTTGGGAACGGAG 58.730 43.478 27.43 4.34 42.34 4.63
639 678 3.380320 GGACAAATATTTGGGAACGGAGG 59.620 47.826 27.43 3.68 42.34 4.30
640 679 4.266714 GACAAATATTTGGGAACGGAGGA 58.733 43.478 27.43 0.00 42.34 3.71
641 680 4.668636 ACAAATATTTGGGAACGGAGGAA 58.331 39.130 27.43 0.00 42.34 3.36
642 681 4.705023 ACAAATATTTGGGAACGGAGGAAG 59.295 41.667 27.43 2.64 42.34 3.46
643 682 4.586306 AATATTTGGGAACGGAGGAAGT 57.414 40.909 0.00 0.00 0.00 3.01
644 683 5.703730 AATATTTGGGAACGGAGGAAGTA 57.296 39.130 0.00 0.00 0.00 2.24
645 684 3.629142 ATTTGGGAACGGAGGAAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
646 685 2.019807 TTGGGAACGGAGGAAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
647 686 2.019807 TGGGAACGGAGGAAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
648 687 2.332117 TGGGAACGGAGGAAGTAGTTT 58.668 47.619 0.00 0.00 0.00 2.66
649 688 2.707257 TGGGAACGGAGGAAGTAGTTTT 59.293 45.455 0.00 0.00 0.00 2.43
650 689 3.136992 TGGGAACGGAGGAAGTAGTTTTT 59.863 43.478 0.00 0.00 0.00 1.94
651 690 4.347583 TGGGAACGGAGGAAGTAGTTTTTA 59.652 41.667 0.00 0.00 0.00 1.52
652 691 4.934001 GGGAACGGAGGAAGTAGTTTTTAG 59.066 45.833 0.00 0.00 0.00 1.85
653 692 4.391216 GGAACGGAGGAAGTAGTTTTTAGC 59.609 45.833 0.00 0.00 0.00 3.09
654 693 3.582780 ACGGAGGAAGTAGTTTTTAGCG 58.417 45.455 0.00 0.00 0.00 4.26
655 694 2.347755 CGGAGGAAGTAGTTTTTAGCGC 59.652 50.000 0.00 0.00 0.00 5.92
656 695 2.347755 GGAGGAAGTAGTTTTTAGCGCG 59.652 50.000 0.00 0.00 0.00 6.86
657 696 1.730612 AGGAAGTAGTTTTTAGCGCGC 59.269 47.619 26.66 26.66 0.00 6.86
658 697 1.730612 GGAAGTAGTTTTTAGCGCGCT 59.269 47.619 38.01 38.01 0.00 5.92
659 698 2.474032 GGAAGTAGTTTTTAGCGCGCTG 60.474 50.000 41.85 0.00 0.00 5.18
660 699 0.442699 AGTAGTTTTTAGCGCGCTGC 59.557 50.000 41.85 24.63 46.98 5.25
671 710 3.121030 GCGCTGCGTGTTGGAGAT 61.121 61.111 24.04 0.00 38.54 2.75
672 711 2.780643 CGCTGCGTGTTGGAGATG 59.219 61.111 14.93 0.00 38.54 2.90
673 712 2.482374 GCTGCGTGTTGGAGATGC 59.518 61.111 0.00 0.00 38.54 3.91
674 713 2.037136 GCTGCGTGTTGGAGATGCT 61.037 57.895 0.00 0.00 38.54 3.79
675 714 1.975363 GCTGCGTGTTGGAGATGCTC 61.975 60.000 0.00 0.00 38.54 4.26
676 715 0.390866 CTGCGTGTTGGAGATGCTCT 60.391 55.000 0.00 0.00 38.54 4.09
677 716 0.671472 TGCGTGTTGGAGATGCTCTG 60.671 55.000 0.00 0.00 0.00 3.35
678 717 0.390340 GCGTGTTGGAGATGCTCTGA 60.390 55.000 0.00 0.00 0.00 3.27
679 718 1.741732 GCGTGTTGGAGATGCTCTGAT 60.742 52.381 0.00 0.00 0.00 2.90
680 719 1.931841 CGTGTTGGAGATGCTCTGATG 59.068 52.381 0.00 0.00 0.00 3.07
681 720 1.669779 GTGTTGGAGATGCTCTGATGC 59.330 52.381 0.00 0.00 0.00 3.91
682 721 1.558294 TGTTGGAGATGCTCTGATGCT 59.442 47.619 0.00 0.00 0.00 3.79
683 722 1.941294 GTTGGAGATGCTCTGATGCTG 59.059 52.381 0.00 0.00 0.00 4.41
684 723 1.201424 TGGAGATGCTCTGATGCTGT 58.799 50.000 0.00 0.00 0.00 4.40
685 724 1.138464 TGGAGATGCTCTGATGCTGTC 59.862 52.381 0.00 0.00 0.00 3.51
686 725 1.138464 GGAGATGCTCTGATGCTGTCA 59.862 52.381 0.00 0.00 35.05 3.58
687 726 2.419713 GGAGATGCTCTGATGCTGTCAA 60.420 50.000 0.00 0.00 36.14 3.18
688 727 3.268330 GAGATGCTCTGATGCTGTCAAA 58.732 45.455 0.00 0.00 36.14 2.69
689 728 3.271729 AGATGCTCTGATGCTGTCAAAG 58.728 45.455 0.00 0.00 36.14 2.77
690 729 2.845363 TGCTCTGATGCTGTCAAAGA 57.155 45.000 0.00 0.00 36.14 2.52
691 730 2.696506 TGCTCTGATGCTGTCAAAGAG 58.303 47.619 0.00 0.00 38.82 2.85
692 731 1.397692 GCTCTGATGCTGTCAAAGAGC 59.602 52.381 13.76 13.76 46.42 4.09
693 732 2.975266 CTCTGATGCTGTCAAAGAGCT 58.025 47.619 0.00 0.00 36.14 4.09
694 733 4.120792 CTCTGATGCTGTCAAAGAGCTA 57.879 45.455 0.00 0.00 36.14 3.32
695 734 4.114073 CTCTGATGCTGTCAAAGAGCTAG 58.886 47.826 0.00 0.00 36.14 3.42
696 735 3.513119 TCTGATGCTGTCAAAGAGCTAGT 59.487 43.478 0.00 0.00 36.14 2.57
697 736 4.706962 TCTGATGCTGTCAAAGAGCTAGTA 59.293 41.667 0.00 0.00 36.14 1.82
698 737 5.185828 TCTGATGCTGTCAAAGAGCTAGTAA 59.814 40.000 0.00 0.00 36.14 2.24
699 738 5.171476 TGATGCTGTCAAAGAGCTAGTAAC 58.829 41.667 0.00 0.00 37.35 2.50
700 739 3.926616 TGCTGTCAAAGAGCTAGTAACC 58.073 45.455 0.00 0.00 37.35 2.85
701 740 3.578716 TGCTGTCAAAGAGCTAGTAACCT 59.421 43.478 0.00 0.00 37.35 3.50
702 741 4.770531 TGCTGTCAAAGAGCTAGTAACCTA 59.229 41.667 0.00 0.00 37.35 3.08
703 742 5.105716 TGCTGTCAAAGAGCTAGTAACCTAG 60.106 44.000 0.00 0.00 43.09 3.02
704 743 5.105675 GCTGTCAAAGAGCTAGTAACCTAGT 60.106 44.000 0.00 0.00 42.35 2.57
705 744 6.095160 GCTGTCAAAGAGCTAGTAACCTAGTA 59.905 42.308 0.00 0.00 42.35 1.82
706 745 7.627298 TGTCAAAGAGCTAGTAACCTAGTAG 57.373 40.000 0.00 0.00 42.35 2.57
707 746 7.173722 TGTCAAAGAGCTAGTAACCTAGTAGT 58.826 38.462 0.00 0.00 42.35 2.73
708 747 7.120873 TGTCAAAGAGCTAGTAACCTAGTAGTG 59.879 40.741 0.00 0.00 42.35 2.74
709 748 7.336427 GTCAAAGAGCTAGTAACCTAGTAGTGA 59.664 40.741 0.00 0.00 42.35 3.41
710 749 7.553402 TCAAAGAGCTAGTAACCTAGTAGTGAG 59.447 40.741 0.00 0.00 42.35 3.51
711 750 5.932455 AGAGCTAGTAACCTAGTAGTGAGG 58.068 45.833 0.00 0.00 42.35 3.86
731 770 3.792401 GGTTTTCCTTTGTGAACCAAGG 58.208 45.455 6.92 6.92 40.90 3.61
732 771 3.196901 GGTTTTCCTTTGTGAACCAAGGT 59.803 43.478 11.81 0.00 40.90 3.50
733 772 4.323180 GGTTTTCCTTTGTGAACCAAGGTT 60.323 41.667 3.73 3.73 40.90 3.50
734 773 5.105269 GGTTTTCCTTTGTGAACCAAGGTTA 60.105 40.000 11.81 1.58 40.90 2.85
735 774 6.399743 GTTTTCCTTTGTGAACCAAGGTTAA 58.600 36.000 11.81 0.00 38.60 2.01
736 775 6.607004 TTTCCTTTGTGAACCAAGGTTAAA 57.393 33.333 11.81 1.74 38.60 1.52
737 776 6.800072 TTCCTTTGTGAACCAAGGTTAAAT 57.200 33.333 11.81 0.00 38.60 1.40
738 777 6.800072 TCCTTTGTGAACCAAGGTTAAATT 57.200 33.333 11.81 0.00 38.60 1.82
739 778 7.189079 TCCTTTGTGAACCAAGGTTAAATTT 57.811 32.000 11.81 0.00 38.60 1.82
740 779 7.625469 TCCTTTGTGAACCAAGGTTAAATTTT 58.375 30.769 11.81 0.00 38.60 1.82
741 780 7.766738 TCCTTTGTGAACCAAGGTTAAATTTTC 59.233 33.333 11.81 0.00 38.60 2.29
742 781 7.768582 CCTTTGTGAACCAAGGTTAAATTTTCT 59.231 33.333 4.14 0.00 38.60 2.52
743 782 8.710835 TTTGTGAACCAAGGTTAAATTTTCTC 57.289 30.769 4.14 0.00 38.60 2.87
744 783 7.411486 TGTGAACCAAGGTTAAATTTTCTCA 57.589 32.000 4.14 0.00 38.60 3.27
745 784 7.488322 TGTGAACCAAGGTTAAATTTTCTCAG 58.512 34.615 4.14 0.00 38.60 3.35
746 785 7.123547 TGTGAACCAAGGTTAAATTTTCTCAGT 59.876 33.333 4.14 0.00 38.60 3.41
747 786 7.979537 GTGAACCAAGGTTAAATTTTCTCAGTT 59.020 33.333 4.14 0.78 38.60 3.16
748 787 8.536175 TGAACCAAGGTTAAATTTTCTCAGTTT 58.464 29.630 4.14 0.00 38.60 2.66
749 788 9.378551 GAACCAAGGTTAAATTTTCTCAGTTTT 57.621 29.630 4.14 0.00 38.60 2.43
750 789 8.716646 ACCAAGGTTAAATTTTCTCAGTTTTG 57.283 30.769 0.00 0.00 0.00 2.44
751 790 8.536175 ACCAAGGTTAAATTTTCTCAGTTTTGA 58.464 29.630 0.00 0.00 0.00 2.69
752 791 9.377312 CCAAGGTTAAATTTTCTCAGTTTTGAA 57.623 29.630 0.00 0.00 31.69 2.69
762 801 8.986477 TTTTCTCAGTTTTGAAGAAAAGAAGG 57.014 30.769 5.63 0.00 36.57 3.46
763 802 7.703058 TTCTCAGTTTTGAAGAAAAGAAGGT 57.297 32.000 0.00 0.00 31.57 3.50
764 803 7.703058 TCTCAGTTTTGAAGAAAAGAAGGTT 57.297 32.000 0.00 0.00 31.57 3.50
765 804 8.801882 TCTCAGTTTTGAAGAAAAGAAGGTTA 57.198 30.769 0.00 0.00 31.57 2.85
766 805 9.238368 TCTCAGTTTTGAAGAAAAGAAGGTTAA 57.762 29.630 0.00 0.00 31.57 2.01
767 806 9.855021 CTCAGTTTTGAAGAAAAGAAGGTTAAA 57.145 29.630 0.00 0.00 31.57 1.52
830 869 4.768968 CCTGACATTGAAAGGTTTGATCCT 59.231 41.667 0.00 0.00 39.84 3.24
831 870 5.336213 CCTGACATTGAAAGGTTTGATCCTG 60.336 44.000 0.00 0.00 37.93 3.86
832 871 4.022068 TGACATTGAAAGGTTTGATCCTGC 60.022 41.667 0.00 0.00 37.93 4.85
833 872 3.259123 ACATTGAAAGGTTTGATCCTGCC 59.741 43.478 0.00 0.00 37.93 4.85
842 881 3.576550 GGTTTGATCCTGCCCAAAACTAA 59.423 43.478 0.00 0.00 37.10 2.24
843 882 4.556233 GTTTGATCCTGCCCAAAACTAAC 58.444 43.478 0.00 0.00 34.52 2.34
844 883 3.806949 TGATCCTGCCCAAAACTAACT 57.193 42.857 0.00 0.00 0.00 2.24
846 885 2.286365 TCCTGCCCAAAACTAACTGG 57.714 50.000 0.00 0.00 0.00 4.00
849 888 2.296190 CCTGCCCAAAACTAACTGGTTC 59.704 50.000 0.00 0.00 0.00 3.62
850 889 3.222603 CTGCCCAAAACTAACTGGTTCT 58.777 45.455 0.00 0.00 0.00 3.01
853 892 3.827722 CCCAAAACTAACTGGTTCTGGA 58.172 45.455 0.18 0.00 30.38 3.86
857 896 6.663523 CCCAAAACTAACTGGTTCTGGATAAT 59.336 38.462 0.18 0.00 30.38 1.28
863 902 9.462606 AACTAACTGGTTCTGGATAATAAAAGG 57.537 33.333 0.00 0.00 0.00 3.11
865 904 9.462606 CTAACTGGTTCTGGATAATAAAAGGTT 57.537 33.333 0.00 0.00 0.00 3.50
867 906 7.699878 ACTGGTTCTGGATAATAAAAGGTTCT 58.300 34.615 0.00 0.00 0.00 3.01
868 907 8.832735 ACTGGTTCTGGATAATAAAAGGTTCTA 58.167 33.333 0.00 0.00 0.00 2.10
869 908 9.110502 CTGGTTCTGGATAATAAAAGGTTCTAC 57.889 37.037 0.00 0.00 0.00 2.59
870 909 8.607713 TGGTTCTGGATAATAAAAGGTTCTACA 58.392 33.333 0.00 0.00 0.00 2.74
871 910 9.628500 GGTTCTGGATAATAAAAGGTTCTACAT 57.372 33.333 0.00 0.00 0.00 2.29
874 913 9.832445 TCTGGATAATAAAAGGTTCTACATGAC 57.168 33.333 0.00 0.00 0.00 3.06
875 914 9.838339 CTGGATAATAAAAGGTTCTACATGACT 57.162 33.333 0.00 0.00 0.00 3.41
876 915 9.832445 TGGATAATAAAAGGTTCTACATGACTC 57.168 33.333 0.00 0.00 0.00 3.36
877 916 8.979574 GGATAATAAAAGGTTCTACATGACTCG 58.020 37.037 0.00 0.00 0.00 4.18
880 919 8.928270 AATAAAAGGTTCTACATGACTCGTAG 57.072 34.615 0.00 0.00 38.15 3.51
893 935 3.379625 CGTAGAGATCGCGTGCGC 61.380 66.667 9.79 0.00 39.59 6.09
894 936 2.024871 GTAGAGATCGCGTGCGCT 59.975 61.111 9.73 9.18 39.59 5.92
895 937 2.024729 TAGAGATCGCGTGCGCTG 59.975 61.111 9.73 1.66 39.59 5.18
903 945 2.452813 CGCGTGCGCTGGTAAATCT 61.453 57.895 9.73 0.00 39.32 2.40
921 963 0.449786 CTCAGCACAGTCGAGTCGAT 59.550 55.000 19.75 5.10 38.42 3.59
922 964 0.169009 TCAGCACAGTCGAGTCGATG 59.831 55.000 19.75 18.47 38.42 3.84
924 966 1.444383 GCACAGTCGAGTCGATGCA 60.444 57.895 26.58 1.34 38.65 3.96
925 967 1.678269 GCACAGTCGAGTCGATGCAC 61.678 60.000 26.58 13.03 38.65 4.57
927 969 1.212751 CAGTCGAGTCGATGCACCA 59.787 57.895 19.75 0.00 38.42 4.17
928 970 0.388520 CAGTCGAGTCGATGCACCAA 60.389 55.000 19.75 0.00 38.42 3.67
1060 1102 4.416601 CCTCCCCCTTCCTCCCGT 62.417 72.222 0.00 0.00 0.00 5.28
1627 1673 4.977963 CACTCAAACATTCACCACATCAAC 59.022 41.667 0.00 0.00 0.00 3.18
1640 1687 3.316029 CCACATCAACTCACTCTTTGCAA 59.684 43.478 0.00 0.00 0.00 4.08
1647 1694 2.555757 ACTCACTCTTTGCAATTCCAGC 59.444 45.455 0.00 0.00 0.00 4.85
1653 1700 0.321021 TTTGCAATTCCAGCGCCAAT 59.679 45.000 2.29 0.00 33.85 3.16
1718 1769 2.124529 TGTGTGCAGAAACGGGCA 60.125 55.556 0.00 0.00 37.77 5.36
1914 1965 4.263572 TGTCCACCGTGGCCAAGG 62.264 66.667 33.19 33.19 37.47 3.61
2039 2090 3.372557 CTCGATATGAGGAGGGGCT 57.627 57.895 0.00 0.00 41.29 5.19
2075 2128 5.907662 AGGTAGATCCATGGAGAAATGAGAA 59.092 40.000 21.33 0.00 39.02 2.87
2096 2149 9.170734 TGAGAAGAGAATGAATTTTGATGTAGG 57.829 33.333 0.00 0.00 0.00 3.18
2156 2217 2.282701 CTGCAAGCAACGCCATTTAT 57.717 45.000 0.00 0.00 0.00 1.40
2158 2219 3.768406 CTGCAAGCAACGCCATTTATAA 58.232 40.909 0.00 0.00 0.00 0.98
2165 2226 3.545426 GCAACGCCATTTATAAGGTCGAC 60.545 47.826 7.13 7.13 0.00 4.20
2201 2269 2.678336 CTCCCTTATTGCGGTGTTCTTC 59.322 50.000 0.00 0.00 0.00 2.87
2202 2270 2.039216 TCCCTTATTGCGGTGTTCTTCA 59.961 45.455 0.00 0.00 0.00 3.02
2211 2279 2.349817 GCGGTGTTCTTCAAGTGTGATG 60.350 50.000 0.00 0.00 32.48 3.07
2252 2327 5.414360 TCAGAAGCTTGTAAGATAGCACAG 58.586 41.667 2.10 0.00 39.85 3.66
2314 2389 5.523552 TGTGGCACATTCTCGATTACTAATG 59.476 40.000 17.96 0.00 44.52 1.90
2450 3917 8.986847 TGAATTTTTACATAATGTTGTGCTTGG 58.013 29.630 0.00 0.00 0.00 3.61
2451 3918 8.900983 AATTTTTACATAATGTTGTGCTTGGT 57.099 26.923 0.00 0.00 0.00 3.67
2452 3919 9.988815 AATTTTTACATAATGTTGTGCTTGGTA 57.011 25.926 0.00 0.00 0.00 3.25
2531 3999 7.092802 TGGTTACTGTATCCTTTAGGTGCATAA 60.093 37.037 14.31 0.00 36.34 1.90
2532 4000 7.771826 GGTTACTGTATCCTTTAGGTGCATAAA 59.228 37.037 7.52 0.00 36.34 1.40
2593 4061 0.914417 GGATTGTCTGGACTCCCCCA 60.914 60.000 2.38 0.00 34.52 4.96
2651 4119 4.631773 CTGTCCATCAGGCCAGTG 57.368 61.111 5.01 0.00 40.23 3.66
2652 4120 1.077930 CTGTCCATCAGGCCAGTGG 60.078 63.158 5.01 10.32 40.23 4.00
2663 4131 3.150949 CCAGTGGCCAGACAGTCA 58.849 61.111 5.11 0.00 0.00 3.41
2679 4147 1.355720 AGTCAATCCTCACCCCCAAAG 59.644 52.381 0.00 0.00 0.00 2.77
2682 4150 2.168272 AATCCTCACCCCCAAAGCCC 62.168 60.000 0.00 0.00 0.00 5.19
2690 4158 4.740822 CCCAAAGCCCCACCTCCG 62.741 72.222 0.00 0.00 0.00 4.63
2715 4183 1.287739 CACCTCTCCTCTCTTCCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
2773 4242 2.104170 ACTACCTGCCTCTCTTGTAGC 58.896 52.381 0.00 0.00 33.79 3.58
2790 4259 2.359354 CCGTTCCCCATTGCGTCA 60.359 61.111 0.00 0.00 0.00 4.35
2794 4263 1.392589 GTTCCCCATTGCGTCATCAT 58.607 50.000 0.00 0.00 0.00 2.45
2824 4293 4.478371 TAGCTCCTCCGGACGCGA 62.478 66.667 15.93 0.00 33.40 5.87
2830 4299 4.052229 CTCCGGACGCGAACACCT 62.052 66.667 15.93 0.00 0.00 4.00
2853 4323 5.448654 TGGAGCTATGAATGCCAATAGTTT 58.551 37.500 0.00 0.00 0.00 2.66
2864 4334 4.819769 TGCCAATAGTTTGAGAAAATGCC 58.180 39.130 0.00 0.00 34.60 4.40
2926 4396 8.707938 TGTAGGATCAATATTTATGATGCGAG 57.292 34.615 0.00 0.00 46.50 5.03
2930 4400 3.684305 TCAATATTTATGATGCGAGGGCG 59.316 43.478 0.00 0.00 44.10 6.13
2979 4449 8.486942 AATTCATGATGGGTATGATCAACAAT 57.513 30.769 0.00 0.00 34.76 2.71
2980 4450 9.590828 AATTCATGATGGGTATGATCAACAATA 57.409 29.630 0.00 0.00 34.76 1.90
2981 4451 9.763837 ATTCATGATGGGTATGATCAACAATAT 57.236 29.630 0.00 0.00 34.76 1.28
3017 4487 4.599047 TCCAACATTTGACATTGGAACC 57.401 40.909 5.88 0.00 46.93 3.62
3018 4488 3.005261 TCCAACATTTGACATTGGAACCG 59.995 43.478 5.88 0.00 46.93 4.44
3019 4489 3.005261 CCAACATTTGACATTGGAACCGA 59.995 43.478 0.00 0.00 44.84 4.69
3020 4490 3.915437 ACATTTGACATTGGAACCGAC 57.085 42.857 0.00 0.00 0.00 4.79
3021 4491 3.486383 ACATTTGACATTGGAACCGACT 58.514 40.909 0.00 0.00 0.00 4.18
3022 4492 3.502211 ACATTTGACATTGGAACCGACTC 59.498 43.478 0.00 0.00 0.00 3.36
3023 4493 2.920724 TTGACATTGGAACCGACTCA 57.079 45.000 0.00 0.00 0.00 3.41
3024 4494 2.920724 TGACATTGGAACCGACTCAA 57.079 45.000 0.00 0.00 0.00 3.02
3025 4495 3.201353 TGACATTGGAACCGACTCAAA 57.799 42.857 0.00 0.00 0.00 2.69
3026 4496 2.875933 TGACATTGGAACCGACTCAAAC 59.124 45.455 0.00 0.00 0.00 2.93
3027 4497 2.225727 GACATTGGAACCGACTCAAACC 59.774 50.000 0.00 0.00 0.00 3.27
3028 4498 2.226330 CATTGGAACCGACTCAAACCA 58.774 47.619 0.00 0.00 0.00 3.67
3029 4499 2.421751 TTGGAACCGACTCAAACCAA 57.578 45.000 0.00 0.00 35.48 3.67
3030 4500 2.421751 TGGAACCGACTCAAACCAAA 57.578 45.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.667724 CGTCCATGCCATCTTTCTCAC 59.332 52.381 0.00 0.00 0.00 3.51
1 2 1.407299 CCGTCCATGCCATCTTTCTCA 60.407 52.381 0.00 0.00 0.00 3.27
2 3 1.134401 TCCGTCCATGCCATCTTTCTC 60.134 52.381 0.00 0.00 0.00 2.87
3 4 0.911769 TCCGTCCATGCCATCTTTCT 59.088 50.000 0.00 0.00 0.00 2.52
4 5 1.750193 TTCCGTCCATGCCATCTTTC 58.250 50.000 0.00 0.00 0.00 2.62
5 6 2.026641 CATTCCGTCCATGCCATCTTT 58.973 47.619 0.00 0.00 0.00 2.52
6 7 1.064463 ACATTCCGTCCATGCCATCTT 60.064 47.619 0.00 0.00 0.00 2.40
7 8 0.548031 ACATTCCGTCCATGCCATCT 59.452 50.000 0.00 0.00 0.00 2.90
8 9 0.947244 GACATTCCGTCCATGCCATC 59.053 55.000 0.00 0.00 38.85 3.51
9 10 0.548031 AGACATTCCGTCCATGCCAT 59.452 50.000 0.00 0.00 46.69 4.40
10 11 0.327924 AAGACATTCCGTCCATGCCA 59.672 50.000 0.00 0.00 46.69 4.92
11 12 1.017387 GAAGACATTCCGTCCATGCC 58.983 55.000 0.00 0.00 46.69 4.40
12 13 1.017387 GGAAGACATTCCGTCCATGC 58.983 55.000 0.00 0.00 45.50 4.06
52 53 5.970592 AGATCTTCAACGACATCTTCATGA 58.029 37.500 0.00 0.00 33.72 3.07
89 90 2.691522 CGCATCACGTGAAGCTCG 59.308 61.111 34.46 24.06 36.69 5.03
109 110 0.857935 CCTCTTCATCATTCTCGCGC 59.142 55.000 0.00 0.00 0.00 6.86
115 116 4.653341 TCTTCCTCCTCCTCTTCATCATTC 59.347 45.833 0.00 0.00 0.00 2.67
124 125 4.073425 AGACAATTCTTCCTCCTCCTCT 57.927 45.455 0.00 0.00 0.00 3.69
141 142 0.034380 ATCCGACTCCTCCGAAGACA 60.034 55.000 0.00 0.00 0.00 3.41
157 158 7.935755 TCATCCTCATCTTACTTTGATTCATCC 59.064 37.037 0.00 0.00 0.00 3.51
166 167 6.406400 CCTCGTCTTCATCCTCATCTTACTTT 60.406 42.308 0.00 0.00 0.00 2.66
170 171 4.580995 GTCCTCGTCTTCATCCTCATCTTA 59.419 45.833 0.00 0.00 0.00 2.10
181 182 0.894184 AAGCCTCGTCCTCGTCTTCA 60.894 55.000 0.00 0.00 38.33 3.02
188 189 2.100605 AACAATCAAGCCTCGTCCTC 57.899 50.000 0.00 0.00 0.00 3.71
208 209 2.425312 TGACACAAACGAAAGGCACATT 59.575 40.909 0.00 0.00 0.00 2.71
211 212 2.032799 TCATGACACAAACGAAAGGCAC 59.967 45.455 0.00 0.00 0.00 5.01
214 215 4.552166 AGTTCATGACACAAACGAAAGG 57.448 40.909 0.00 0.00 0.00 3.11
241 242 7.267128 TCAAATTCATGCCCACAAGATTATTC 58.733 34.615 0.00 0.00 0.00 1.75
242 243 7.185318 TCAAATTCATGCCCACAAGATTATT 57.815 32.000 0.00 0.00 0.00 1.40
243 244 6.795144 TCAAATTCATGCCCACAAGATTAT 57.205 33.333 0.00 0.00 0.00 1.28
244 245 6.211184 AGTTCAAATTCATGCCCACAAGATTA 59.789 34.615 0.00 0.00 0.00 1.75
245 246 5.012354 AGTTCAAATTCATGCCCACAAGATT 59.988 36.000 0.00 0.00 0.00 2.40
246 247 4.529377 AGTTCAAATTCATGCCCACAAGAT 59.471 37.500 0.00 0.00 0.00 2.40
272 291 8.463930 AGTTGATGACTAAAAGTTCATTTCCA 57.536 30.769 0.00 0.00 36.65 3.53
288 307 5.640732 AGTTCACACAAACAAGTTGATGAC 58.359 37.500 10.54 2.68 39.87 3.06
357 378 4.081031 TGCCATATGTTGCATTTTGGACAT 60.081 37.500 1.24 4.93 31.31 3.06
397 418 1.003223 ACTAAAATTTATCGCGGGCGC 60.003 47.619 6.13 0.00 39.59 6.53
403 424 3.035942 CAGCCGCACTAAAATTTATCGC 58.964 45.455 0.00 0.00 0.00 4.58
404 425 3.035942 GCAGCCGCACTAAAATTTATCG 58.964 45.455 0.00 0.00 38.36 2.92
405 426 4.037690 CAGCAGCCGCACTAAAATTTATC 58.962 43.478 0.00 0.00 42.27 1.75
406 427 3.694072 TCAGCAGCCGCACTAAAATTTAT 59.306 39.130 0.00 0.00 42.27 1.40
407 428 3.078097 TCAGCAGCCGCACTAAAATTTA 58.922 40.909 0.00 0.00 42.27 1.40
408 429 1.885887 TCAGCAGCCGCACTAAAATTT 59.114 42.857 0.00 0.00 42.27 1.82
444 483 3.583276 ATCGTCTGGTTTGGCGCGA 62.583 57.895 12.10 0.00 0.00 5.87
466 505 0.640768 GAGTACTACTTTGCAGCGCG 59.359 55.000 0.00 0.00 0.00 6.86
471 510 1.822990 CGGAGGGAGTACTACTTTGCA 59.177 52.381 4.77 0.00 0.00 4.08
472 511 1.823610 ACGGAGGGAGTACTACTTTGC 59.176 52.381 4.77 0.00 0.00 3.68
482 521 4.586306 AATATTTGGAAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
483 522 4.705023 ACAAATATTTGGAAACGGAGGGAG 59.295 41.667 27.43 2.64 42.34 4.30
484 523 4.668636 ACAAATATTTGGAAACGGAGGGA 58.331 39.130 27.43 0.00 42.34 4.20
485 524 4.705023 AGACAAATATTTGGAAACGGAGGG 59.295 41.667 27.43 3.22 42.34 4.30
486 525 5.897377 AGACAAATATTTGGAAACGGAGG 57.103 39.130 27.43 3.68 42.34 4.30
487 526 8.587952 AAAAAGACAAATATTTGGAAACGGAG 57.412 30.769 27.43 4.34 42.34 4.63
488 527 9.685828 CTAAAAAGACAAATATTTGGAAACGGA 57.314 29.630 27.43 10.48 42.34 4.69
489 528 9.685828 TCTAAAAAGACAAATATTTGGAAACGG 57.314 29.630 27.43 12.94 42.34 4.44
563 602 7.519002 ACGAAGCAAAATAAGTGAATCTACAC 58.481 34.615 0.00 0.00 40.60 2.90
564 603 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
565 604 9.638300 CATACGAAGCAAAATAAGTGAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
566 605 8.335356 GCATACGAAGCAAAATAAGTGAATCTA 58.665 33.333 0.00 0.00 0.00 1.98
567 606 7.148255 TGCATACGAAGCAAAATAAGTGAATCT 60.148 33.333 0.00 0.00 39.39 2.40
568 607 6.966632 TGCATACGAAGCAAAATAAGTGAATC 59.033 34.615 0.00 0.00 39.39 2.52
569 608 6.851609 TGCATACGAAGCAAAATAAGTGAAT 58.148 32.000 0.00 0.00 39.39 2.57
570 609 6.072728 ACTGCATACGAAGCAAAATAAGTGAA 60.073 34.615 0.00 0.00 42.17 3.18
571 610 5.411361 ACTGCATACGAAGCAAAATAAGTGA 59.589 36.000 0.00 0.00 42.17 3.41
572 611 5.631026 ACTGCATACGAAGCAAAATAAGTG 58.369 37.500 0.00 0.00 42.17 3.16
573 612 5.411361 TGACTGCATACGAAGCAAAATAAGT 59.589 36.000 0.00 0.00 42.17 2.24
574 613 5.734498 GTGACTGCATACGAAGCAAAATAAG 59.266 40.000 0.00 0.00 42.17 1.73
575 614 5.411361 AGTGACTGCATACGAAGCAAAATAA 59.589 36.000 0.00 0.00 42.17 1.40
576 615 4.935205 AGTGACTGCATACGAAGCAAAATA 59.065 37.500 0.00 0.00 42.17 1.40
577 616 3.753272 AGTGACTGCATACGAAGCAAAAT 59.247 39.130 0.00 0.00 42.17 1.82
578 617 3.138304 AGTGACTGCATACGAAGCAAAA 58.862 40.909 0.00 0.00 42.17 2.44
579 618 2.766313 AGTGACTGCATACGAAGCAAA 58.234 42.857 0.00 0.00 42.17 3.68
580 619 2.455674 AGTGACTGCATACGAAGCAA 57.544 45.000 0.00 0.00 42.17 3.91
581 620 2.455674 AAGTGACTGCATACGAAGCA 57.544 45.000 0.00 0.00 40.19 3.91
582 621 6.583912 TTAATAAGTGACTGCATACGAAGC 57.416 37.500 0.00 0.00 0.00 3.86
583 622 9.638300 GATTTTAATAAGTGACTGCATACGAAG 57.362 33.333 0.00 0.00 0.00 3.79
584 623 9.378551 AGATTTTAATAAGTGACTGCATACGAA 57.621 29.630 0.00 0.00 0.00 3.85
585 624 8.942338 AGATTTTAATAAGTGACTGCATACGA 57.058 30.769 0.00 0.00 0.00 3.43
586 625 9.035607 AGAGATTTTAATAAGTGACTGCATACG 57.964 33.333 0.00 0.00 0.00 3.06
605 644 9.413734 CCCAAATATTTGTCCTTCTAGAGATTT 57.586 33.333 23.24 0.00 36.45 2.17
606 645 8.781951 TCCCAAATATTTGTCCTTCTAGAGATT 58.218 33.333 23.24 0.00 36.45 2.40
607 646 8.337118 TCCCAAATATTTGTCCTTCTAGAGAT 57.663 34.615 23.24 0.00 36.45 2.75
608 647 7.749377 TCCCAAATATTTGTCCTTCTAGAGA 57.251 36.000 23.24 5.94 36.45 3.10
609 648 7.011482 CGTTCCCAAATATTTGTCCTTCTAGAG 59.989 40.741 23.24 7.00 36.45 2.43
610 649 6.821665 CGTTCCCAAATATTTGTCCTTCTAGA 59.178 38.462 23.24 7.17 36.45 2.43
611 650 6.038271 CCGTTCCCAAATATTTGTCCTTCTAG 59.962 42.308 23.24 8.23 36.45 2.43
612 651 5.883673 CCGTTCCCAAATATTTGTCCTTCTA 59.116 40.000 23.24 2.87 36.45 2.10
613 652 4.705023 CCGTTCCCAAATATTTGTCCTTCT 59.295 41.667 23.24 0.00 36.45 2.85
614 653 4.703093 TCCGTTCCCAAATATTTGTCCTTC 59.297 41.667 23.24 10.84 36.45 3.46
615 654 4.668636 TCCGTTCCCAAATATTTGTCCTT 58.331 39.130 23.24 0.00 36.45 3.36
616 655 4.270008 CTCCGTTCCCAAATATTTGTCCT 58.730 43.478 23.24 0.00 36.45 3.85
617 656 3.380320 CCTCCGTTCCCAAATATTTGTCC 59.620 47.826 23.24 9.53 36.45 4.02
618 657 4.266714 TCCTCCGTTCCCAAATATTTGTC 58.733 43.478 23.24 11.68 36.45 3.18
619 658 4.310022 TCCTCCGTTCCCAAATATTTGT 57.690 40.909 23.24 0.00 36.45 2.83
620 659 4.705023 ACTTCCTCCGTTCCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
621 660 4.930696 ACTTCCTCCGTTCCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
622 661 4.586306 ACTTCCTCCGTTCCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
623 662 4.720273 ACTACTTCCTCCGTTCCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
624 663 4.098894 ACTACTTCCTCCGTTCCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
625 664 2.910977 ACTACTTCCTCCGTTCCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
626 665 2.332117 ACTACTTCCTCCGTTCCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
627 666 2.019807 ACTACTTCCTCCGTTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
628 667 2.019807 AACTACTTCCTCCGTTCCCA 57.980 50.000 0.00 0.00 0.00 4.37
629 668 3.413846 AAAACTACTTCCTCCGTTCCC 57.586 47.619 0.00 0.00 0.00 3.97
630 669 4.391216 GCTAAAAACTACTTCCTCCGTTCC 59.609 45.833 0.00 0.00 0.00 3.62
631 670 4.091075 CGCTAAAAACTACTTCCTCCGTTC 59.909 45.833 0.00 0.00 0.00 3.95
632 671 3.992427 CGCTAAAAACTACTTCCTCCGTT 59.008 43.478 0.00 0.00 0.00 4.44
633 672 3.582780 CGCTAAAAACTACTTCCTCCGT 58.417 45.455 0.00 0.00 0.00 4.69
634 673 2.347755 GCGCTAAAAACTACTTCCTCCG 59.652 50.000 0.00 0.00 0.00 4.63
635 674 2.347755 CGCGCTAAAAACTACTTCCTCC 59.652 50.000 5.56 0.00 0.00 4.30
636 675 2.222752 GCGCGCTAAAAACTACTTCCTC 60.223 50.000 26.67 0.00 0.00 3.71
637 676 1.730612 GCGCGCTAAAAACTACTTCCT 59.269 47.619 26.67 0.00 0.00 3.36
638 677 1.730612 AGCGCGCTAAAAACTACTTCC 59.269 47.619 35.79 0.00 0.00 3.46
639 678 2.759038 CAGCGCGCTAAAAACTACTTC 58.241 47.619 36.02 0.00 0.00 3.01
640 679 1.136057 GCAGCGCGCTAAAAACTACTT 60.136 47.619 36.02 3.77 37.77 2.24
641 680 0.442699 GCAGCGCGCTAAAAACTACT 59.557 50.000 36.02 4.43 37.77 2.57
642 681 2.912542 GCAGCGCGCTAAAAACTAC 58.087 52.632 36.02 11.71 37.77 2.73
654 693 3.121030 ATCTCCAACACGCAGCGC 61.121 61.111 16.61 0.00 0.00 5.92
655 694 2.780643 CATCTCCAACACGCAGCG 59.219 61.111 14.82 14.82 0.00 5.18
656 695 1.975363 GAGCATCTCCAACACGCAGC 61.975 60.000 0.00 0.00 0.00 5.25
657 696 2.084844 GAGCATCTCCAACACGCAG 58.915 57.895 0.00 0.00 0.00 5.18
658 697 4.284123 GAGCATCTCCAACACGCA 57.716 55.556 0.00 0.00 0.00 5.24
669 708 3.268330 TCTTTGACAGCATCAGAGCATC 58.732 45.455 4.23 0.00 39.03 3.91
670 709 3.271729 CTCTTTGACAGCATCAGAGCAT 58.728 45.455 4.23 0.00 39.03 3.79
671 710 2.696506 CTCTTTGACAGCATCAGAGCA 58.303 47.619 4.23 0.00 39.03 4.26
672 711 1.397692 GCTCTTTGACAGCATCAGAGC 59.602 52.381 13.12 13.12 44.19 4.09
673 712 2.975266 AGCTCTTTGACAGCATCAGAG 58.025 47.619 2.99 2.99 40.26 3.35
674 713 3.513119 ACTAGCTCTTTGACAGCATCAGA 59.487 43.478 0.00 0.00 38.99 3.27
675 714 3.859443 ACTAGCTCTTTGACAGCATCAG 58.141 45.455 0.00 0.00 38.99 2.90
676 715 3.969287 ACTAGCTCTTTGACAGCATCA 57.031 42.857 0.00 0.00 39.56 3.07
677 716 4.568760 GGTTACTAGCTCTTTGACAGCATC 59.431 45.833 0.00 0.00 39.56 3.91
678 717 4.223923 AGGTTACTAGCTCTTTGACAGCAT 59.776 41.667 0.00 0.00 39.56 3.79
679 718 3.578716 AGGTTACTAGCTCTTTGACAGCA 59.421 43.478 0.00 0.00 39.56 4.41
680 719 4.195225 AGGTTACTAGCTCTTTGACAGC 57.805 45.455 0.00 0.00 37.12 4.40
699 738 5.701290 CACAAAGGAAAACCTCACTACTAGG 59.299 44.000 0.00 0.00 40.20 3.02
700 739 6.522054 TCACAAAGGAAAACCTCACTACTAG 58.478 40.000 0.00 0.00 0.00 2.57
701 740 6.488769 TCACAAAGGAAAACCTCACTACTA 57.511 37.500 0.00 0.00 0.00 1.82
702 741 5.367945 TCACAAAGGAAAACCTCACTACT 57.632 39.130 0.00 0.00 0.00 2.57
703 742 5.220989 GGTTCACAAAGGAAAACCTCACTAC 60.221 44.000 0.00 0.00 38.48 2.73
704 743 4.885325 GGTTCACAAAGGAAAACCTCACTA 59.115 41.667 0.00 0.00 38.48 2.74
705 744 3.699538 GGTTCACAAAGGAAAACCTCACT 59.300 43.478 0.00 0.00 38.48 3.41
706 745 3.445805 TGGTTCACAAAGGAAAACCTCAC 59.554 43.478 4.90 0.00 41.41 3.51
707 746 3.702792 TGGTTCACAAAGGAAAACCTCA 58.297 40.909 4.90 0.00 41.41 3.86
708 747 4.441495 CCTTGGTTCACAAAGGAAAACCTC 60.441 45.833 7.28 0.00 41.41 3.85
709 748 3.450817 CCTTGGTTCACAAAGGAAAACCT 59.549 43.478 7.28 0.00 41.41 3.50
710 749 3.196901 ACCTTGGTTCACAAAGGAAAACC 59.803 43.478 18.60 0.00 41.26 3.27
711 750 4.465632 ACCTTGGTTCACAAAGGAAAAC 57.534 40.909 18.60 0.00 38.91 2.43
712 751 6.607004 TTAACCTTGGTTCACAAAGGAAAA 57.393 33.333 18.60 9.62 38.91 2.29
713 752 6.607004 TTTAACCTTGGTTCACAAAGGAAA 57.393 33.333 18.60 9.92 38.91 3.13
714 753 6.800072 ATTTAACCTTGGTTCACAAAGGAA 57.200 33.333 18.60 4.48 38.91 3.36
715 754 6.800072 AATTTAACCTTGGTTCACAAAGGA 57.200 33.333 18.60 0.00 38.91 3.36
716 755 7.768582 AGAAAATTTAACCTTGGTTCACAAAGG 59.231 33.333 11.14 11.14 38.91 3.11
717 756 8.716646 AGAAAATTTAACCTTGGTTCACAAAG 57.283 30.769 8.46 0.00 38.91 2.77
718 757 8.314751 TGAGAAAATTTAACCTTGGTTCACAAA 58.685 29.630 8.46 5.04 38.91 2.83
719 758 7.841956 TGAGAAAATTTAACCTTGGTTCACAA 58.158 30.769 8.46 1.83 37.55 3.33
720 759 7.123547 ACTGAGAAAATTTAACCTTGGTTCACA 59.876 33.333 8.46 0.00 0.00 3.58
721 760 7.489160 ACTGAGAAAATTTAACCTTGGTTCAC 58.511 34.615 8.46 0.00 0.00 3.18
722 761 7.654022 ACTGAGAAAATTTAACCTTGGTTCA 57.346 32.000 8.46 0.00 0.00 3.18
723 762 8.942338 AAACTGAGAAAATTTAACCTTGGTTC 57.058 30.769 8.46 0.00 0.00 3.62
724 763 9.161629 CAAAACTGAGAAAATTTAACCTTGGTT 57.838 29.630 10.11 10.11 0.00 3.67
725 764 8.536175 TCAAAACTGAGAAAATTTAACCTTGGT 58.464 29.630 0.00 0.00 0.00 3.67
726 765 8.940768 TCAAAACTGAGAAAATTTAACCTTGG 57.059 30.769 0.00 0.00 0.00 3.61
736 775 9.591792 CCTTCTTTTCTTCAAAACTGAGAAAAT 57.408 29.630 9.96 0.00 37.68 1.82
737 776 8.585018 ACCTTCTTTTCTTCAAAACTGAGAAAA 58.415 29.630 9.36 9.36 37.09 2.29
738 777 8.122472 ACCTTCTTTTCTTCAAAACTGAGAAA 57.878 30.769 0.00 0.00 0.00 2.52
739 778 7.703058 ACCTTCTTTTCTTCAAAACTGAGAA 57.297 32.000 0.00 0.00 0.00 2.87
740 779 7.703058 AACCTTCTTTTCTTCAAAACTGAGA 57.297 32.000 0.00 0.00 0.00 3.27
741 780 9.855021 TTTAACCTTCTTTTCTTCAAAACTGAG 57.145 29.630 0.00 0.00 0.00 3.35
769 808 9.537192 TCTAACTTCAGTTTCAGATTTTCGTAA 57.463 29.630 0.00 0.00 39.31 3.18
770 809 9.537192 TTCTAACTTCAGTTTCAGATTTTCGTA 57.463 29.630 0.00 0.00 39.31 3.43
771 810 8.433421 TTCTAACTTCAGTTTCAGATTTTCGT 57.567 30.769 0.00 0.00 39.31 3.85
772 811 8.765219 TCTTCTAACTTCAGTTTCAGATTTTCG 58.235 33.333 0.00 0.00 39.31 3.46
776 815 9.784531 TGAATCTTCTAACTTCAGTTTCAGATT 57.215 29.630 14.60 14.60 38.33 2.40
777 816 9.434420 CTGAATCTTCTAACTTCAGTTTCAGAT 57.566 33.333 11.36 6.05 42.20 2.90
778 817 7.875041 CCTGAATCTTCTAACTTCAGTTTCAGA 59.125 37.037 15.87 7.05 42.20 3.27
779 818 7.875041 TCCTGAATCTTCTAACTTCAGTTTCAG 59.125 37.037 9.81 10.37 42.69 3.02
780 819 7.735917 TCCTGAATCTTCTAACTTCAGTTTCA 58.264 34.615 9.81 0.00 42.69 2.69
781 820 8.499967 GTTCCTGAATCTTCTAACTTCAGTTTC 58.500 37.037 9.81 0.00 42.69 2.78
782 821 7.445707 GGTTCCTGAATCTTCTAACTTCAGTTT 59.554 37.037 9.81 0.00 42.69 2.66
783 822 6.937465 GGTTCCTGAATCTTCTAACTTCAGTT 59.063 38.462 9.81 0.00 42.69 3.16
784 823 6.271159 AGGTTCCTGAATCTTCTAACTTCAGT 59.729 38.462 9.81 0.00 42.69 3.41
785 824 6.593382 CAGGTTCCTGAATCTTCTAACTTCAG 59.407 42.308 13.02 4.87 43.46 3.02
786 825 6.270000 TCAGGTTCCTGAATCTTCTAACTTCA 59.730 38.462 17.85 0.00 39.76 3.02
787 826 6.592220 GTCAGGTTCCTGAATCTTCTAACTTC 59.408 42.308 21.13 2.98 43.59 3.01
788 827 6.043243 TGTCAGGTTCCTGAATCTTCTAACTT 59.957 38.462 21.13 0.00 43.59 2.66
789 828 5.544176 TGTCAGGTTCCTGAATCTTCTAACT 59.456 40.000 21.13 0.00 43.59 2.24
790 829 5.794894 TGTCAGGTTCCTGAATCTTCTAAC 58.205 41.667 21.13 8.43 43.59 2.34
791 830 6.627087 ATGTCAGGTTCCTGAATCTTCTAA 57.373 37.500 21.13 3.17 43.59 2.10
792 831 6.213397 TCAATGTCAGGTTCCTGAATCTTCTA 59.787 38.462 21.13 3.95 43.59 2.10
793 832 5.013495 TCAATGTCAGGTTCCTGAATCTTCT 59.987 40.000 21.13 3.06 43.59 2.85
794 833 5.248640 TCAATGTCAGGTTCCTGAATCTTC 58.751 41.667 21.13 10.43 43.59 2.87
807 846 4.768968 AGGATCAAACCTTTCAATGTCAGG 59.231 41.667 0.00 0.00 36.86 3.86
811 850 3.259123 GGCAGGATCAAACCTTTCAATGT 59.741 43.478 0.00 0.00 38.32 2.71
812 851 3.368739 GGGCAGGATCAAACCTTTCAATG 60.369 47.826 0.00 0.00 38.32 2.82
813 852 2.833943 GGGCAGGATCAAACCTTTCAAT 59.166 45.455 0.00 0.00 38.32 2.57
814 853 2.247358 GGGCAGGATCAAACCTTTCAA 58.753 47.619 0.00 0.00 38.32 2.69
830 869 2.955660 CAGAACCAGTTAGTTTTGGGCA 59.044 45.455 0.00 0.00 38.82 5.36
831 870 2.296190 CCAGAACCAGTTAGTTTTGGGC 59.704 50.000 6.17 0.00 44.40 5.36
832 871 3.827722 TCCAGAACCAGTTAGTTTTGGG 58.172 45.455 12.43 0.52 46.77 4.12
842 881 7.699878 AGAACCTTTTATTATCCAGAACCAGT 58.300 34.615 0.00 0.00 0.00 4.00
843 882 9.110502 GTAGAACCTTTTATTATCCAGAACCAG 57.889 37.037 0.00 0.00 0.00 4.00
844 883 8.607713 TGTAGAACCTTTTATTATCCAGAACCA 58.392 33.333 0.00 0.00 0.00 3.67
849 888 9.838339 AGTCATGTAGAACCTTTTATTATCCAG 57.162 33.333 0.00 0.00 0.00 3.86
850 889 9.832445 GAGTCATGTAGAACCTTTTATTATCCA 57.168 33.333 0.00 0.00 0.00 3.41
857 896 7.609146 TCTCTACGAGTCATGTAGAACCTTTTA 59.391 37.037 8.63 0.00 45.52 1.52
860 899 5.498393 TCTCTACGAGTCATGTAGAACCTT 58.502 41.667 8.63 0.00 45.52 3.50
861 900 5.100344 TCTCTACGAGTCATGTAGAACCT 57.900 43.478 8.63 0.00 45.52 3.50
862 901 5.333492 CGATCTCTACGAGTCATGTAGAACC 60.333 48.000 8.63 2.39 45.52 3.62
863 902 5.672051 CGATCTCTACGAGTCATGTAGAAC 58.328 45.833 8.63 4.28 45.52 3.01
865 904 3.741856 GCGATCTCTACGAGTCATGTAGA 59.258 47.826 7.44 7.44 44.44 2.59
867 906 2.475487 CGCGATCTCTACGAGTCATGTA 59.525 50.000 0.00 0.00 0.00 2.29
868 907 1.261885 CGCGATCTCTACGAGTCATGT 59.738 52.381 0.00 0.00 0.00 3.21
869 908 1.261885 ACGCGATCTCTACGAGTCATG 59.738 52.381 15.93 0.00 39.21 3.07
870 909 1.261885 CACGCGATCTCTACGAGTCAT 59.738 52.381 15.93 0.00 41.13 3.06
871 910 0.651031 CACGCGATCTCTACGAGTCA 59.349 55.000 15.93 0.00 41.13 3.41
872 911 0.655048 GCACGCGATCTCTACGAGTC 60.655 60.000 15.93 0.00 41.13 3.36
874 913 1.719425 CGCACGCGATCTCTACGAG 60.719 63.158 15.93 0.00 42.83 4.18
875 914 2.323447 CGCACGCGATCTCTACGA 59.677 61.111 15.93 0.00 42.83 3.43
876 915 3.379625 GCGCACGCGATCTCTACG 61.380 66.667 15.93 6.44 42.83 3.51
893 935 2.926200 CGACTGTGCTGAGATTTACCAG 59.074 50.000 0.00 0.00 0.00 4.00
894 936 2.560981 TCGACTGTGCTGAGATTTACCA 59.439 45.455 0.00 0.00 0.00 3.25
895 937 3.182967 CTCGACTGTGCTGAGATTTACC 58.817 50.000 0.00 0.00 31.31 2.85
903 945 0.169009 CATCGACTCGACTGTGCTGA 59.831 55.000 2.53 0.00 39.18 4.26
908 950 1.213013 GGTGCATCGACTCGACTGT 59.787 57.895 2.53 0.00 39.18 3.55
909 951 0.388520 TTGGTGCATCGACTCGACTG 60.389 55.000 2.53 5.10 39.18 3.51
912 954 0.669318 GGTTTGGTGCATCGACTCGA 60.669 55.000 3.06 3.06 41.13 4.04
913 955 0.948623 TGGTTTGGTGCATCGACTCG 60.949 55.000 0.00 0.00 0.00 4.18
921 963 2.123121 TGCCCATGGTTTGGTGCA 60.123 55.556 11.73 9.06 44.83 4.57
922 964 1.259840 ATCTGCCCATGGTTTGGTGC 61.260 55.000 11.73 6.21 44.83 5.01
924 966 2.624029 CCTTATCTGCCCATGGTTTGGT 60.624 50.000 11.73 0.00 44.83 3.67
925 967 2.034124 CCTTATCTGCCCATGGTTTGG 58.966 52.381 11.73 0.00 46.00 3.28
927 969 1.780503 GCCTTATCTGCCCATGGTTT 58.219 50.000 11.73 0.00 0.00 3.27
928 970 0.466189 CGCCTTATCTGCCCATGGTT 60.466 55.000 11.73 0.00 0.00 3.67
1131 1173 2.822399 GGGTCCGGCTCCATGTAG 59.178 66.667 15.44 0.00 0.00 2.74
1347 1389 2.482142 GCATGTAGGAAGAGGAAGACGG 60.482 54.545 0.00 0.00 0.00 4.79
1399 1441 2.050533 GCACGCGGCAAATCAACA 60.051 55.556 12.47 0.00 43.97 3.33
1400 1442 3.165318 CGCACGCGGCAAATCAAC 61.165 61.111 12.47 0.00 45.17 3.18
1627 1673 2.413765 CGCTGGAATTGCAAAGAGTGAG 60.414 50.000 1.71 0.00 0.00 3.51
1718 1769 1.374758 CGCCTGGCTCTTCGACTTT 60.375 57.895 17.92 0.00 0.00 2.66
2075 2128 6.183360 CGTGCCTACATCAAAATTCATTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
2096 2149 0.179153 GTTCCTCCTACGTACCGTGC 60.179 60.000 0.00 0.00 41.39 5.34
2150 2211 3.489785 GCACGGAGTCGACCTTATAAATG 59.510 47.826 13.01 1.65 41.61 2.32
2156 2217 1.303888 AGGCACGGAGTCGACCTTA 60.304 57.895 13.01 0.00 41.61 2.69
2158 2219 3.374402 CAGGCACGGAGTCGACCT 61.374 66.667 13.01 0.00 41.61 3.85
2165 2226 1.365633 GGAGATAGCAGGCACGGAG 59.634 63.158 0.00 0.00 0.00 4.63
2201 2269 1.265095 GTGCCACTCACATCACACTTG 59.735 52.381 0.00 0.00 44.98 3.16
2202 2270 1.597742 GTGCCACTCACATCACACTT 58.402 50.000 0.00 0.00 44.98 3.16
2211 2279 1.424493 GATGCGCTAGTGCCACTCAC 61.424 60.000 24.82 6.74 45.98 3.51
2226 2294 4.813161 TGCTATCTTACAAGCTTCTGATGC 59.187 41.667 7.40 7.40 39.53 3.91
2252 2327 1.734465 CAAGGAGCACGAGTCAAATCC 59.266 52.381 0.00 0.00 0.00 3.01
2287 2362 1.453155 ATCGAGAATGTGCCACAACC 58.547 50.000 0.00 0.00 0.00 3.77
2314 2389 7.718272 ATTACAAATGCCATCATTAACATGC 57.282 32.000 0.00 0.00 41.77 4.06
2502 3969 6.038271 GCACCTAAAGGATACAGTAACCATTG 59.962 42.308 9.45 0.00 38.94 2.82
2531 3999 4.019174 CCAAGGAGATGCCATAAACTGTT 58.981 43.478 0.00 0.00 40.02 3.16
2532 4000 3.624777 CCAAGGAGATGCCATAAACTGT 58.375 45.455 0.00 0.00 40.02 3.55
2570 4038 1.680249 GGGAGTCCAGACAATCCTTGC 60.680 57.143 12.30 0.00 32.18 4.01
2584 4052 0.325272 GGACTGAGTTTGGGGGAGTC 59.675 60.000 0.00 0.00 33.67 3.36
2593 4061 5.338708 CCTTCCTCACATATGGACTGAGTTT 60.339 44.000 16.43 0.00 31.16 2.66
2651 4119 0.615331 TGAGGATTGACTGTCTGGCC 59.385 55.000 9.51 0.00 0.00 5.36
2652 4120 1.677217 GGTGAGGATTGACTGTCTGGC 60.677 57.143 9.51 0.00 0.00 4.85
2661 4129 0.039618 GCTTTGGGGGTGAGGATTGA 59.960 55.000 0.00 0.00 0.00 2.57
2663 4131 1.388133 GGCTTTGGGGGTGAGGATT 59.612 57.895 0.00 0.00 0.00 3.01
2682 4150 2.683933 AGGTGGCTACGGAGGTGG 60.684 66.667 0.00 0.00 0.00 4.61
2690 4158 2.028876 GAAGAGAGGAGAGGTGGCTAC 58.971 57.143 0.00 0.00 0.00 3.58
2715 4183 2.435938 GGAATCAAGCGCGGGTGA 60.436 61.111 8.83 12.74 0.00 4.02
2773 4242 1.714899 GATGACGCAATGGGGAACGG 61.715 60.000 1.62 0.00 0.00 4.44
2790 4259 4.106197 GAGCTACGTCGAAGAACAATGAT 58.894 43.478 5.05 0.00 39.69 2.45
2794 4263 1.884579 AGGAGCTACGTCGAAGAACAA 59.115 47.619 5.05 0.00 39.69 2.83
2824 4293 2.648059 GCATTCATAGCTCCAGGTGTT 58.352 47.619 0.00 0.00 0.00 3.32
2830 4299 4.712051 ACTATTGGCATTCATAGCTCCA 57.288 40.909 0.00 0.00 0.00 3.86
2853 4323 1.564348 GGTCTAGGGGGCATTTTCTCA 59.436 52.381 0.00 0.00 0.00 3.27
2864 4334 4.498894 AAAAATTACCTCGGTCTAGGGG 57.501 45.455 0.00 0.00 41.32 4.79
2902 4372 7.225538 CCCTCGCATCATAAATATTGATCCTAC 59.774 40.741 0.00 0.00 31.50 3.18
2930 4400 4.916983 TCCTAAATATGCACCACAATGC 57.083 40.909 0.00 0.00 46.32 3.56
2979 4449 4.018870 TGTTGGAGGCACTTGACCATTATA 60.019 41.667 0.00 0.00 41.55 0.98
2980 4450 3.245229 TGTTGGAGGCACTTGACCATTAT 60.245 43.478 0.00 0.00 41.55 1.28
2981 4451 2.107378 TGTTGGAGGCACTTGACCATTA 59.893 45.455 0.00 0.00 41.55 1.90
2982 4452 1.133513 TGTTGGAGGCACTTGACCATT 60.134 47.619 0.00 0.00 41.55 3.16
2983 4453 0.478072 TGTTGGAGGCACTTGACCAT 59.522 50.000 0.00 0.00 41.55 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.