Multiple sequence alignment - TraesCS1A01G346500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G346500 chr1A 100.000 1908 0 0 897 2804 532968551 532966644 0.000000e+00 3524.0
1 TraesCS1A01G346500 chr1A 100.000 480 0 0 1 480 532969447 532968968 0.000000e+00 887.0
2 TraesCS1A01G346500 chr1A 98.701 231 2 1 1 230 37619010 37619240 2.600000e-110 409.0
3 TraesCS1A01G346500 chr1A 98.291 234 3 1 1 233 147684891 147684658 2.600000e-110 409.0
4 TraesCS1A01G346500 chr1D 89.819 1493 56 29 897 2336 435535657 435534208 0.000000e+00 1827.0
5 TraesCS1A01G346500 chr1D 93.607 219 5 6 270 480 435535925 435535708 4.510000e-83 318.0
6 TraesCS1A01G346500 chr1D 87.402 127 6 5 2419 2535 51920521 51920647 1.350000e-28 137.0
7 TraesCS1A01G346500 chr1D 86.614 127 7 5 2419 2535 254388892 254389018 6.300000e-27 132.0
8 TraesCS1A01G346500 chr1B 88.791 1472 71 31 897 2309 588822766 588821330 0.000000e+00 1718.0
9 TraesCS1A01G346500 chr1B 95.197 229 7 4 244 472 588823051 588822827 2.660000e-95 359.0
10 TraesCS1A01G346500 chr2A 98.707 232 2 1 1 231 688238620 688238851 7.230000e-111 411.0
11 TraesCS1A01G346500 chr2A 98.690 229 3 0 1 229 771203201 771203429 9.350000e-110 407.0
12 TraesCS1A01G346500 chr6A 98.696 230 2 1 1 229 602356701 602356930 9.350000e-110 407.0
13 TraesCS1A01G346500 chr5A 97.490 239 5 1 1 238 450435816 450436054 9.350000e-110 407.0
14 TraesCS1A01G346500 chr5A 97.854 233 4 1 1 232 666907947 666908179 4.350000e-108 401.0
15 TraesCS1A01G346500 chr7A 97.872 235 2 3 1 232 439630276 439630042 1.210000e-108 403.0
16 TraesCS1A01G346500 chr7A 91.011 89 8 0 2450 2538 701028764 701028676 1.360000e-23 121.0
17 TraesCS1A01G346500 chr3B 97.071 239 6 1 1 238 176924142 176924380 4.350000e-108 401.0
18 TraesCS1A01G346500 chr2B 87.121 132 7 6 2422 2543 584226101 584225970 1.050000e-29 141.0
19 TraesCS1A01G346500 chr2B 100.000 28 0 0 2422 2449 119597663 119597636 5.000000e-03 52.8
20 TraesCS1A01G346500 chr5B 87.903 124 8 2 2419 2535 617033967 617034090 3.770000e-29 139.0
21 TraesCS1A01G346500 chr6D 87.402 127 6 5 2419 2535 135458254 135458380 1.350000e-28 137.0
22 TraesCS1A01G346500 chr6D 87.903 124 5 5 2422 2535 458921505 458921382 1.350000e-28 137.0
23 TraesCS1A01G346500 chr4D 95.349 86 4 0 2450 2535 207364116 207364201 1.350000e-28 137.0
24 TraesCS1A01G346500 chr4D 86.614 127 7 1 2419 2535 177443247 177443373 6.300000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G346500 chr1A 532966644 532969447 2803 True 2205.5 3524 100.000 1 2804 2 chr1A.!!$R2 2803
1 TraesCS1A01G346500 chr1D 435534208 435535925 1717 True 1072.5 1827 91.713 270 2336 2 chr1D.!!$R1 2066
2 TraesCS1A01G346500 chr1B 588821330 588823051 1721 True 1038.5 1718 91.994 244 2309 2 chr1B.!!$R1 2065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1008 0.104672 TCCCCCTCTGACAAGGACAA 60.105 55.0 5.53 0.0 38.87 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 2448 0.250553 TGCTGACCCGTGGTTAAAGG 60.251 55.0 0.0 0.0 35.25 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.437289 CTGAGGCTTTTTAACACATGACA 57.563 39.130 0.00 0.00 0.00 3.58
23 24 5.181690 TGAGGCTTTTTAACACATGACAC 57.818 39.130 0.00 0.00 0.00 3.67
24 25 4.887071 TGAGGCTTTTTAACACATGACACT 59.113 37.500 0.00 0.00 0.00 3.55
25 26 6.058833 TGAGGCTTTTTAACACATGACACTA 58.941 36.000 0.00 0.00 0.00 2.74
26 27 6.714810 TGAGGCTTTTTAACACATGACACTAT 59.285 34.615 0.00 0.00 0.00 2.12
27 28 7.230510 TGAGGCTTTTTAACACATGACACTATT 59.769 33.333 0.00 0.00 0.00 1.73
28 29 7.593825 AGGCTTTTTAACACATGACACTATTC 58.406 34.615 0.00 0.00 0.00 1.75
29 30 6.806739 GGCTTTTTAACACATGACACTATTCC 59.193 38.462 0.00 0.00 0.00 3.01
30 31 7.309194 GGCTTTTTAACACATGACACTATTCCT 60.309 37.037 0.00 0.00 0.00 3.36
31 32 7.750903 GCTTTTTAACACATGACACTATTCCTC 59.249 37.037 0.00 0.00 0.00 3.71
32 33 7.681939 TTTTAACACATGACACTATTCCTCC 57.318 36.000 0.00 0.00 0.00 4.30
33 34 6.620877 TTAACACATGACACTATTCCTCCT 57.379 37.500 0.00 0.00 0.00 3.69
34 35 4.744795 ACACATGACACTATTCCTCCTC 57.255 45.455 0.00 0.00 0.00 3.71
35 36 3.452627 ACACATGACACTATTCCTCCTCC 59.547 47.826 0.00 0.00 0.00 4.30
36 37 3.041946 ACATGACACTATTCCTCCTCCC 58.958 50.000 0.00 0.00 0.00 4.30
37 38 1.776662 TGACACTATTCCTCCTCCCG 58.223 55.000 0.00 0.00 0.00 5.14
38 39 1.041437 GACACTATTCCTCCTCCCGG 58.959 60.000 0.00 0.00 0.00 5.73
39 40 0.635009 ACACTATTCCTCCTCCCGGA 59.365 55.000 0.73 0.00 37.82 5.14
40 41 1.041437 CACTATTCCTCCTCCCGGAC 58.959 60.000 0.73 0.00 34.92 4.79
41 42 0.105607 ACTATTCCTCCTCCCGGACC 60.106 60.000 0.73 0.00 34.92 4.46
42 43 0.105658 CTATTCCTCCTCCCGGACCA 60.106 60.000 0.73 0.00 34.92 4.02
43 44 0.105658 TATTCCTCCTCCCGGACCAG 60.106 60.000 0.73 0.00 34.92 4.00
44 45 2.898472 ATTCCTCCTCCCGGACCAGG 62.898 65.000 0.73 5.22 34.92 4.45
45 46 4.075793 CCTCCTCCCGGACCAGGA 62.076 72.222 0.73 9.92 37.27 3.86
46 47 2.038975 CTCCTCCCGGACCAGGAA 59.961 66.667 15.34 3.36 38.39 3.36
47 48 1.383248 CTCCTCCCGGACCAGGAAT 60.383 63.158 15.34 0.00 38.39 3.01
48 49 0.983378 CTCCTCCCGGACCAGGAATT 60.983 60.000 15.34 0.00 38.39 2.17
49 50 0.549169 TCCTCCCGGACCAGGAATTT 60.549 55.000 0.73 0.00 35.75 1.82
50 51 0.394352 CCTCCCGGACCAGGAATTTG 60.394 60.000 0.73 0.00 31.49 2.32
51 52 0.328258 CTCCCGGACCAGGAATTTGT 59.672 55.000 0.73 0.00 31.49 2.83
52 53 0.326927 TCCCGGACCAGGAATTTGTC 59.673 55.000 0.73 0.00 0.00 3.18
53 54 0.328258 CCCGGACCAGGAATTTGTCT 59.672 55.000 0.73 0.00 0.00 3.41
54 55 1.271926 CCCGGACCAGGAATTTGTCTT 60.272 52.381 0.73 0.00 0.00 3.01
55 56 2.514803 CCGGACCAGGAATTTGTCTTT 58.485 47.619 0.00 0.00 0.00 2.52
56 57 2.890945 CCGGACCAGGAATTTGTCTTTT 59.109 45.455 0.00 0.00 0.00 2.27
57 58 3.320826 CCGGACCAGGAATTTGTCTTTTT 59.679 43.478 0.00 0.00 0.00 1.94
78 79 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
79 80 3.799366 TGTACAGGTCACATTTCAACGT 58.201 40.909 0.00 0.00 0.00 3.99
80 81 4.193090 TGTACAGGTCACATTTCAACGTT 58.807 39.130 0.00 0.00 0.00 3.99
81 82 4.636648 TGTACAGGTCACATTTCAACGTTT 59.363 37.500 0.00 0.00 0.00 3.60
82 83 4.712122 ACAGGTCACATTTCAACGTTTT 57.288 36.364 0.00 0.00 0.00 2.43
83 84 5.066968 ACAGGTCACATTTCAACGTTTTT 57.933 34.783 0.00 0.00 0.00 1.94
84 85 5.099575 ACAGGTCACATTTCAACGTTTTTC 58.900 37.500 0.00 0.00 0.00 2.29
85 86 5.098893 CAGGTCACATTTCAACGTTTTTCA 58.901 37.500 0.00 0.00 0.00 2.69
86 87 5.748152 CAGGTCACATTTCAACGTTTTTCAT 59.252 36.000 0.00 0.00 0.00 2.57
87 88 6.255453 CAGGTCACATTTCAACGTTTTTCATT 59.745 34.615 0.00 0.00 0.00 2.57
88 89 6.475402 AGGTCACATTTCAACGTTTTTCATTC 59.525 34.615 0.00 0.00 0.00 2.67
89 90 6.475402 GGTCACATTTCAACGTTTTTCATTCT 59.525 34.615 0.00 0.00 0.00 2.40
90 91 7.329582 GTCACATTTCAACGTTTTTCATTCTG 58.670 34.615 0.00 0.00 0.00 3.02
91 92 7.219917 GTCACATTTCAACGTTTTTCATTCTGA 59.780 33.333 0.00 0.00 0.00 3.27
92 93 7.757173 TCACATTTCAACGTTTTTCATTCTGAA 59.243 29.630 0.00 0.00 34.03 3.02
93 94 8.379161 CACATTTCAACGTTTTTCATTCTGAAA 58.621 29.630 0.00 3.25 43.84 2.69
94 95 9.097257 ACATTTCAACGTTTTTCATTCTGAAAT 57.903 25.926 11.37 11.37 44.75 2.17
95 96 9.919348 CATTTCAACGTTTTTCATTCTGAAATT 57.081 25.926 13.54 1.71 44.75 1.82
102 103 9.360093 ACGTTTTTCATTCTGAAATTTTACACA 57.640 25.926 3.36 0.00 44.75 3.72
103 104 9.618410 CGTTTTTCATTCTGAAATTTTACACAC 57.382 29.630 3.36 0.00 44.75 3.82
109 110 8.243426 TCATTCTGAAATTTTACACACATAGGC 58.757 33.333 0.00 0.00 0.00 3.93
110 111 7.517614 TTCTGAAATTTTACACACATAGGCA 57.482 32.000 0.00 0.00 0.00 4.75
111 112 7.701539 TCTGAAATTTTACACACATAGGCAT 57.298 32.000 0.00 0.00 0.00 4.40
112 113 8.800370 TCTGAAATTTTACACACATAGGCATA 57.200 30.769 0.00 0.00 0.00 3.14
113 114 9.237187 TCTGAAATTTTACACACATAGGCATAA 57.763 29.630 0.00 0.00 0.00 1.90
114 115 9.289303 CTGAAATTTTACACACATAGGCATAAC 57.711 33.333 0.00 0.00 0.00 1.89
115 116 8.797438 TGAAATTTTACACACATAGGCATAACA 58.203 29.630 0.00 0.00 0.00 2.41
116 117 9.801873 GAAATTTTACACACATAGGCATAACAT 57.198 29.630 0.00 0.00 0.00 2.71
119 120 9.627123 ATTTTACACACATAGGCATAACATACT 57.373 29.630 0.00 0.00 0.00 2.12
120 121 9.456147 TTTTACACACATAGGCATAACATACTT 57.544 29.630 0.00 0.00 0.00 2.24
121 122 6.925610 ACACACATAGGCATAACATACTTG 57.074 37.500 0.00 0.00 0.00 3.16
122 123 6.414732 ACACACATAGGCATAACATACTTGT 58.585 36.000 0.00 0.00 37.82 3.16
124 125 7.393234 ACACACATAGGCATAACATACTTGTTT 59.607 33.333 0.00 0.00 43.57 2.83
125 126 8.888716 CACACATAGGCATAACATACTTGTTTA 58.111 33.333 0.00 0.00 43.57 2.01
126 127 8.889717 ACACATAGGCATAACATACTTGTTTAC 58.110 33.333 0.00 0.00 43.57 2.01
127 128 9.109393 CACATAGGCATAACATACTTGTTTACT 57.891 33.333 0.00 0.00 43.57 2.24
128 129 9.681062 ACATAGGCATAACATACTTGTTTACTT 57.319 29.630 0.00 0.00 43.57 2.24
129 130 9.935682 CATAGGCATAACATACTTGTTTACTTG 57.064 33.333 0.00 0.00 43.57 3.16
130 131 6.852664 AGGCATAACATACTTGTTTACTTGC 58.147 36.000 0.00 2.98 43.57 4.01
131 132 6.432783 AGGCATAACATACTTGTTTACTTGCA 59.567 34.615 0.00 0.00 43.57 4.08
132 133 6.526674 GGCATAACATACTTGTTTACTTGCAC 59.473 38.462 0.00 0.00 43.57 4.57
133 134 7.081349 GCATAACATACTTGTTTACTTGCACA 58.919 34.615 0.00 0.00 43.57 4.57
134 135 7.593273 GCATAACATACTTGTTTACTTGCACAA 59.407 33.333 0.00 0.00 43.57 3.33
135 136 9.624697 CATAACATACTTGTTTACTTGCACAAT 57.375 29.630 0.00 0.00 43.57 2.71
137 138 8.940768 AACATACTTGTTTACTTGCACAATTT 57.059 26.923 0.00 0.00 43.57 1.82
138 139 8.940768 ACATACTTGTTTACTTGCACAATTTT 57.059 26.923 0.00 0.00 32.50 1.82
139 140 9.377312 ACATACTTGTTTACTTGCACAATTTTT 57.623 25.926 0.00 0.00 32.50 1.94
173 174 9.952188 TTTTTGAAACCGAAAAGTTTGAATTTT 57.048 22.222 0.00 0.00 40.01 1.82
174 175 8.941127 TTTGAAACCGAAAAGTTTGAATTTTG 57.059 26.923 0.00 0.00 40.01 2.44
175 176 7.891183 TGAAACCGAAAAGTTTGAATTTTGA 57.109 28.000 0.00 0.00 40.01 2.69
176 177 8.485976 TGAAACCGAAAAGTTTGAATTTTGAT 57.514 26.923 0.00 0.00 40.01 2.57
177 178 8.940952 TGAAACCGAAAAGTTTGAATTTTGATT 58.059 25.926 0.00 0.00 40.01 2.57
178 179 9.767684 GAAACCGAAAAGTTTGAATTTTGATTT 57.232 25.926 0.00 0.00 40.01 2.17
179 180 9.553418 AAACCGAAAAGTTTGAATTTTGATTTG 57.447 25.926 0.00 0.00 38.51 2.32
180 181 8.262715 ACCGAAAAGTTTGAATTTTGATTTGT 57.737 26.923 0.00 0.00 30.22 2.83
181 182 8.726068 ACCGAAAAGTTTGAATTTTGATTTGTT 58.274 25.926 0.00 0.00 30.22 2.83
182 183 9.553418 CCGAAAAGTTTGAATTTTGATTTGTTT 57.447 25.926 0.00 0.00 30.22 2.83
212 213 3.554342 CTCCATGGCTCCCGGGAG 61.554 72.222 41.29 41.29 44.56 4.30
220 221 4.016706 CTCCCGGGAGCCAAACGT 62.017 66.667 36.90 0.00 35.31 3.99
221 222 3.952628 CTCCCGGGAGCCAAACGTC 62.953 68.421 36.90 0.00 35.31 4.34
224 225 4.675029 CGGGAGCCAAACGTCCGT 62.675 66.667 1.73 0.00 35.14 4.69
225 226 2.281276 GGGAGCCAAACGTCCGTT 60.281 61.111 0.00 0.00 40.45 4.44
226 227 2.322830 GGGAGCCAAACGTCCGTTC 61.323 63.158 5.44 0.00 37.35 3.95
227 228 1.301479 GGAGCCAAACGTCCGTTCT 60.301 57.895 5.44 0.00 37.35 3.01
228 229 1.289800 GGAGCCAAACGTCCGTTCTC 61.290 60.000 5.44 8.11 37.35 2.87
229 230 0.319641 GAGCCAAACGTCCGTTCTCT 60.320 55.000 5.44 3.63 37.35 3.10
230 231 0.963962 AGCCAAACGTCCGTTCTCTA 59.036 50.000 5.44 0.00 37.35 2.43
231 232 1.549170 AGCCAAACGTCCGTTCTCTAT 59.451 47.619 5.44 0.00 37.35 1.98
232 233 1.659098 GCCAAACGTCCGTTCTCTATG 59.341 52.381 5.44 0.27 37.35 2.23
233 234 2.929592 GCCAAACGTCCGTTCTCTATGT 60.930 50.000 5.44 0.00 37.35 2.29
234 235 2.921754 CCAAACGTCCGTTCTCTATGTC 59.078 50.000 5.44 0.00 37.35 3.06
235 236 3.367087 CCAAACGTCCGTTCTCTATGTCT 60.367 47.826 5.44 0.00 37.35 3.41
236 237 4.142534 CCAAACGTCCGTTCTCTATGTCTA 60.143 45.833 5.44 0.00 37.35 2.59
237 238 4.879104 AACGTCCGTTCTCTATGTCTAG 57.121 45.455 0.00 0.00 32.09 2.43
238 239 4.134379 ACGTCCGTTCTCTATGTCTAGA 57.866 45.455 0.00 0.00 32.96 2.43
239 240 4.511527 ACGTCCGTTCTCTATGTCTAGAA 58.488 43.478 0.00 0.00 33.59 2.10
240 241 5.124645 ACGTCCGTTCTCTATGTCTAGAAT 58.875 41.667 0.00 0.00 34.43 2.40
241 242 5.236911 ACGTCCGTTCTCTATGTCTAGAATC 59.763 44.000 0.00 0.00 34.43 2.52
242 243 5.334260 CGTCCGTTCTCTATGTCTAGAATCC 60.334 48.000 0.00 0.00 34.43 3.01
250 251 7.230747 TCTCTATGTCTAGAATCCAGAAGAGG 58.769 42.308 16.19 0.00 33.59 3.69
253 254 6.729690 ATGTCTAGAATCCAGAAGAGGAAG 57.270 41.667 0.00 0.00 41.92 3.46
268 269 4.017126 AGAGGAAGAAAAATAAAGGCGGG 58.983 43.478 0.00 0.00 0.00 6.13
273 274 1.609635 AAAAATAAAGGCGGGCGGGG 61.610 55.000 0.00 0.00 0.00 5.73
274 275 2.791613 AAAATAAAGGCGGGCGGGGT 62.792 55.000 0.00 0.00 0.00 4.95
275 276 4.499633 ATAAAGGCGGGCGGGGTG 62.500 66.667 0.00 0.00 0.00 4.61
952 967 3.179265 CCGTCACGGCGTGTCATC 61.179 66.667 35.65 22.93 41.17 2.92
953 968 2.430075 CGTCACGGCGTGTCATCA 60.430 61.111 35.65 16.74 34.79 3.07
965 980 3.951775 GTGTCATCACACCTCTCTCTT 57.048 47.619 0.00 0.00 46.49 2.85
991 1008 0.104672 TCCCCCTCTGACAAGGACAA 60.105 55.000 5.53 0.00 38.87 3.18
992 1009 0.326264 CCCCCTCTGACAAGGACAAG 59.674 60.000 5.53 0.00 38.87 3.16
993 1010 0.326264 CCCCTCTGACAAGGACAAGG 59.674 60.000 5.53 0.00 38.87 3.61
994 1011 1.352083 CCCTCTGACAAGGACAAGGA 58.648 55.000 5.53 0.00 38.87 3.36
995 1012 1.002544 CCCTCTGACAAGGACAAGGAC 59.997 57.143 5.53 0.00 38.87 3.85
996 1013 1.337260 CCTCTGACAAGGACAAGGACG 60.337 57.143 0.00 0.00 38.87 4.79
1173 1190 1.323271 ACCATCAGTCTGCCGTCGAT 61.323 55.000 0.00 0.00 0.00 3.59
1541 1558 4.366684 CTCCCACCACAAGGGGCC 62.367 72.222 0.00 0.00 46.77 5.80
1584 1601 4.680237 TCGCCCAAGTCCACGCTG 62.680 66.667 0.00 0.00 0.00 5.18
1817 1846 3.801050 GTCATGTGATCAATCAGGAGACG 59.199 47.826 0.00 0.00 37.51 4.18
1830 1859 2.852075 AGACGGAAGCCCCACCAA 60.852 61.111 0.00 0.00 34.14 3.67
1920 1969 8.863872 ATTATTAAATTCTACCATTCCCGGAG 57.136 34.615 0.73 0.00 0.00 4.63
1921 1970 5.703730 TTAAATTCTACCATTCCCGGAGT 57.296 39.130 0.73 0.00 0.00 3.85
1961 2010 4.426416 TGTAGATAAACAAGCGCGTATGT 58.574 39.130 8.43 10.72 0.00 2.29
1962 2011 5.580661 TGTAGATAAACAAGCGCGTATGTA 58.419 37.500 17.10 5.56 0.00 2.29
1963 2012 6.210796 TGTAGATAAACAAGCGCGTATGTAT 58.789 36.000 17.10 9.57 0.00 2.29
1964 2013 5.576337 AGATAAACAAGCGCGTATGTATG 57.424 39.130 17.10 6.41 0.00 2.39
2044 2107 2.074547 TCGAGACCGTCAATGGTTTC 57.925 50.000 0.40 2.55 44.01 2.78
2053 2116 3.063452 CCGTCAATGGTTTCGGATTAGTG 59.937 47.826 0.00 0.00 44.86 2.74
2159 2226 0.100682 TAGCGGTGTCTCGAATCTGC 59.899 55.000 0.00 0.00 0.00 4.26
2172 2239 2.537529 CGAATCTGCGTGCCACTAATTG 60.538 50.000 0.00 0.00 0.00 2.32
2196 2263 6.073058 TGTCTATGTGCTTGACTTTGTTGATC 60.073 38.462 0.00 0.00 31.75 2.92
2210 2278 5.784750 TTGTTGATCAGTTAGATTCTGCG 57.215 39.130 0.00 0.00 37.00 5.18
2275 2351 0.034198 GCTATCCGGCTCCTCCTTTC 59.966 60.000 0.00 0.00 0.00 2.62
2312 2388 3.870955 ACGCTCAGTGAGTCCCAA 58.129 55.556 21.06 0.00 31.39 4.12
2316 2392 1.802069 GCTCAGTGAGTCCCAACTTC 58.198 55.000 21.06 0.00 35.28 3.01
2330 2410 6.039829 AGTCCCAACTTCAATTCTTTGACTTC 59.960 38.462 0.00 0.00 41.50 3.01
2331 2411 6.039829 GTCCCAACTTCAATTCTTTGACTTCT 59.960 38.462 0.00 0.00 41.50 2.85
2340 2420 9.988350 TTCAATTCTTTGACTTCTTATAATCGC 57.012 29.630 0.00 0.00 41.50 4.58
2341 2421 9.383519 TCAATTCTTTGACTTCTTATAATCGCT 57.616 29.630 0.00 0.00 36.94 4.93
2342 2422 9.643652 CAATTCTTTGACTTCTTATAATCGCTC 57.356 33.333 0.00 0.00 34.60 5.03
2343 2423 8.948631 ATTCTTTGACTTCTTATAATCGCTCA 57.051 30.769 0.00 0.00 0.00 4.26
2344 2424 8.948631 TTCTTTGACTTCTTATAATCGCTCAT 57.051 30.769 0.00 0.00 0.00 2.90
2345 2425 8.357796 TCTTTGACTTCTTATAATCGCTCATG 57.642 34.615 0.00 0.00 0.00 3.07
2346 2426 8.197439 TCTTTGACTTCTTATAATCGCTCATGA 58.803 33.333 0.00 0.00 0.00 3.07
2347 2427 8.893219 TTTGACTTCTTATAATCGCTCATGAT 57.107 30.769 0.00 0.00 0.00 2.45
2348 2428 9.981114 TTTGACTTCTTATAATCGCTCATGATA 57.019 29.630 0.00 0.00 0.00 2.15
2363 2443 9.884465 TCGCTCATGATATATACATTATTCGAG 57.116 33.333 0.00 0.00 0.00 4.04
2364 2444 9.122613 CGCTCATGATATATACATTATTCGAGG 57.877 37.037 0.00 0.00 0.00 4.63
2365 2445 8.920665 GCTCATGATATATACATTATTCGAGGC 58.079 37.037 0.00 0.00 0.00 4.70
2370 2450 9.642343 TGATATATACATTATTCGAGGCTACCT 57.358 33.333 0.00 0.00 36.03 3.08
2375 2455 8.828688 ATACATTATTCGAGGCTACCTTTAAC 57.171 34.615 0.00 0.00 31.76 2.01
2376 2456 6.053650 ACATTATTCGAGGCTACCTTTAACC 58.946 40.000 0.00 0.00 31.76 2.85
2377 2457 5.680594 TTATTCGAGGCTACCTTTAACCA 57.319 39.130 0.00 0.00 31.76 3.67
2378 2458 3.323751 TTCGAGGCTACCTTTAACCAC 57.676 47.619 0.00 0.00 31.76 4.16
2379 2459 1.203052 TCGAGGCTACCTTTAACCACG 59.797 52.381 0.00 0.00 37.57 4.94
2380 2460 1.738030 CGAGGCTACCTTTAACCACGG 60.738 57.143 0.00 0.00 31.76 4.94
2381 2461 0.616891 AGGCTACCTTTAACCACGGG 59.383 55.000 0.00 0.00 0.00 5.28
2382 2462 0.325933 GGCTACCTTTAACCACGGGT 59.674 55.000 0.00 0.00 37.65 5.28
2383 2463 1.676916 GGCTACCTTTAACCACGGGTC 60.677 57.143 0.00 0.00 33.12 4.46
2384 2464 1.002315 GCTACCTTTAACCACGGGTCA 59.998 52.381 0.00 0.00 33.12 4.02
2385 2465 2.933928 GCTACCTTTAACCACGGGTCAG 60.934 54.545 0.00 0.00 33.12 3.51
2386 2466 0.250597 ACCTTTAACCACGGGTCAGC 60.251 55.000 0.00 0.00 33.12 4.26
2387 2467 0.250553 CCTTTAACCACGGGTCAGCA 60.251 55.000 0.00 0.00 33.12 4.41
2388 2468 1.156736 CTTTAACCACGGGTCAGCAG 58.843 55.000 0.00 0.00 33.12 4.24
2389 2469 0.250553 TTTAACCACGGGTCAGCAGG 60.251 55.000 0.00 0.00 33.12 4.85
2390 2470 2.119484 TTAACCACGGGTCAGCAGGG 62.119 60.000 0.00 0.00 33.12 4.45
2392 2472 3.953775 CCACGGGTCAGCAGGGTT 61.954 66.667 0.00 0.00 0.00 4.11
2393 2473 2.589157 CCACGGGTCAGCAGGGTTA 61.589 63.158 0.00 0.00 0.00 2.85
2394 2474 1.079127 CACGGGTCAGCAGGGTTAG 60.079 63.158 0.00 0.00 0.00 2.34
2395 2475 2.125106 CGGGTCAGCAGGGTTAGC 60.125 66.667 0.00 0.00 0.00 3.09
2396 2476 2.954684 CGGGTCAGCAGGGTTAGCA 61.955 63.158 0.00 0.00 0.00 3.49
2397 2477 1.377333 GGGTCAGCAGGGTTAGCAC 60.377 63.158 0.00 0.00 0.00 4.40
2398 2478 1.374947 GGTCAGCAGGGTTAGCACA 59.625 57.895 0.00 0.00 0.00 4.57
2399 2479 0.250727 GGTCAGCAGGGTTAGCACAA 60.251 55.000 0.00 0.00 0.00 3.33
2400 2480 1.614317 GGTCAGCAGGGTTAGCACAAT 60.614 52.381 0.00 0.00 0.00 2.71
2401 2481 1.470098 GTCAGCAGGGTTAGCACAATG 59.530 52.381 0.00 0.00 0.00 2.82
2402 2482 1.350684 TCAGCAGGGTTAGCACAATGA 59.649 47.619 0.00 0.00 0.00 2.57
2403 2483 1.470098 CAGCAGGGTTAGCACAATGAC 59.530 52.381 0.00 0.00 0.00 3.06
2404 2484 1.073763 AGCAGGGTTAGCACAATGACA 59.926 47.619 0.00 0.00 0.00 3.58
2405 2485 2.094675 GCAGGGTTAGCACAATGACAT 58.905 47.619 0.00 0.00 0.00 3.06
2406 2486 2.159338 GCAGGGTTAGCACAATGACATG 60.159 50.000 0.00 0.00 0.00 3.21
2407 2487 2.094675 AGGGTTAGCACAATGACATGC 58.905 47.619 0.00 0.00 42.39 4.06
2408 2488 1.818060 GGGTTAGCACAATGACATGCA 59.182 47.619 2.57 0.00 44.59 3.96
2409 2489 2.230992 GGGTTAGCACAATGACATGCAA 59.769 45.455 0.00 0.00 44.59 4.08
2410 2490 3.244976 GGTTAGCACAATGACATGCAAC 58.755 45.455 0.00 4.89 44.59 4.17
2411 2491 3.305267 GGTTAGCACAATGACATGCAACA 60.305 43.478 0.00 0.00 44.59 3.33
2412 2492 4.487948 GTTAGCACAATGACATGCAACAT 58.512 39.130 0.00 0.00 44.59 2.71
2413 2493 2.954316 AGCACAATGACATGCAACATG 58.046 42.857 6.03 6.03 44.59 3.21
2414 2494 1.392168 GCACAATGACATGCAACATGC 59.608 47.619 7.46 0.00 45.29 4.06
2433 2513 2.411904 GCATGTTGCGGGAAATTTTCA 58.588 42.857 11.09 0.00 31.71 2.69
2434 2514 2.805099 GCATGTTGCGGGAAATTTTCAA 59.195 40.909 11.09 0.00 31.71 2.69
2435 2515 3.249559 GCATGTTGCGGGAAATTTTCAAA 59.750 39.130 11.09 0.00 31.71 2.69
2436 2516 4.771360 CATGTTGCGGGAAATTTTCAAAC 58.229 39.130 11.09 9.39 0.00 2.93
2437 2517 2.860735 TGTTGCGGGAAATTTTCAAACG 59.139 40.909 11.09 12.02 0.00 3.60
2438 2518 3.117046 GTTGCGGGAAATTTTCAAACGA 58.883 40.909 18.11 3.50 0.00 3.85
2439 2519 3.438297 TGCGGGAAATTTTCAAACGAA 57.562 38.095 18.11 9.37 0.00 3.85
2440 2520 3.117046 TGCGGGAAATTTTCAAACGAAC 58.883 40.909 18.11 7.21 0.00 3.95
2441 2521 3.117046 GCGGGAAATTTTCAAACGAACA 58.883 40.909 18.11 0.00 0.00 3.18
2442 2522 3.552294 GCGGGAAATTTTCAAACGAACAA 59.448 39.130 18.11 0.00 0.00 2.83
2443 2523 4.210328 GCGGGAAATTTTCAAACGAACAAT 59.790 37.500 18.11 0.00 0.00 2.71
2444 2524 5.277106 GCGGGAAATTTTCAAACGAACAATT 60.277 36.000 18.11 0.00 0.00 2.32
2445 2525 6.710611 CGGGAAATTTTCAAACGAACAATTT 58.289 32.000 11.09 0.00 32.28 1.82
2446 2526 6.843779 CGGGAAATTTTCAAACGAACAATTTC 59.156 34.615 11.09 16.66 38.01 2.17
2447 2527 7.464710 CGGGAAATTTTCAAACGAACAATTTCA 60.465 33.333 21.02 0.00 38.90 2.69
2448 2528 8.178313 GGGAAATTTTCAAACGAACAATTTCAA 58.822 29.630 21.02 0.16 38.90 2.69
2449 2529 8.994881 GGAAATTTTCAAACGAACAATTTCAAC 58.005 29.630 21.02 11.56 38.90 3.18
2450 2530 9.535270 GAAATTTTCAAACGAACAATTTCAACA 57.465 25.926 18.19 0.00 38.23 3.33
2451 2531 9.884465 AAATTTTCAAACGAACAATTTCAACAA 57.116 22.222 0.00 0.00 0.00 2.83
2454 2534 9.884465 TTTTCAAACGAACAATTTCAACAATTT 57.116 22.222 0.00 0.00 0.00 1.82
2455 2535 9.535270 TTTCAAACGAACAATTTCAACAATTTC 57.465 25.926 0.00 0.00 0.00 2.17
2456 2536 8.472683 TCAAACGAACAATTTCAACAATTTCT 57.527 26.923 0.00 0.00 0.00 2.52
2457 2537 8.930760 TCAAACGAACAATTTCAACAATTTCTT 58.069 25.926 0.00 0.00 0.00 2.52
2493 2573 9.832445 TGTTCAACTTTATGTATTCCTCTATCC 57.168 33.333 0.00 0.00 0.00 2.59
2494 2574 9.832445 GTTCAACTTTATGTATTCCTCTATCCA 57.168 33.333 0.00 0.00 0.00 3.41
2535 2615 9.764363 TGTATAGAAATGGCTATAACAGAGTTG 57.236 33.333 0.00 0.00 35.67 3.16
2536 2616 9.982651 GTATAGAAATGGCTATAACAGAGTTGA 57.017 33.333 0.00 0.00 35.67 3.18
2539 2619 8.894768 AGAAATGGCTATAACAGAGTTGATAC 57.105 34.615 0.00 0.00 0.00 2.24
2540 2620 8.486210 AGAAATGGCTATAACAGAGTTGATACA 58.514 33.333 0.00 0.00 0.00 2.29
2541 2621 9.277783 GAAATGGCTATAACAGAGTTGATACAT 57.722 33.333 0.00 0.00 0.00 2.29
2542 2622 8.839310 AATGGCTATAACAGAGTTGATACATC 57.161 34.615 0.00 0.00 0.00 3.06
2543 2623 6.759272 TGGCTATAACAGAGTTGATACATCC 58.241 40.000 0.00 0.00 0.00 3.51
2544 2624 6.326323 TGGCTATAACAGAGTTGATACATCCA 59.674 38.462 0.00 0.00 0.00 3.41
2545 2625 7.016563 TGGCTATAACAGAGTTGATACATCCAT 59.983 37.037 0.00 0.00 0.00 3.41
2546 2626 7.332926 GGCTATAACAGAGTTGATACATCCATG 59.667 40.741 0.00 0.00 0.00 3.66
2547 2627 7.148507 GCTATAACAGAGTTGATACATCCATGC 60.149 40.741 0.00 0.00 0.00 4.06
2548 2628 4.492494 ACAGAGTTGATACATCCATGCA 57.508 40.909 0.00 0.00 0.00 3.96
2549 2629 5.045012 ACAGAGTTGATACATCCATGCAT 57.955 39.130 0.00 0.00 0.00 3.96
2550 2630 4.820173 ACAGAGTTGATACATCCATGCATG 59.180 41.667 20.19 20.19 0.00 4.06
2551 2631 4.820173 CAGAGTTGATACATCCATGCATGT 59.180 41.667 24.58 7.56 40.28 3.21
2552 2632 4.820173 AGAGTTGATACATCCATGCATGTG 59.180 41.667 24.58 18.97 37.57 3.21
2553 2633 4.784177 AGTTGATACATCCATGCATGTGA 58.216 39.130 24.58 20.28 37.57 3.58
2554 2634 4.577693 AGTTGATACATCCATGCATGTGAC 59.422 41.667 24.58 10.93 37.57 3.67
2555 2635 4.153673 TGATACATCCATGCATGTGACA 57.846 40.909 24.58 15.62 37.57 3.58
2556 2636 4.525024 TGATACATCCATGCATGTGACAA 58.475 39.130 24.58 8.18 37.57 3.18
2557 2637 4.577283 TGATACATCCATGCATGTGACAAG 59.423 41.667 24.58 15.64 37.57 3.16
2558 2638 2.799017 ACATCCATGCATGTGACAAGT 58.201 42.857 24.58 16.16 35.57 3.16
2559 2639 3.954200 ACATCCATGCATGTGACAAGTA 58.046 40.909 24.58 0.95 35.57 2.24
2560 2640 4.334552 ACATCCATGCATGTGACAAGTAA 58.665 39.130 24.58 0.29 35.57 2.24
2561 2641 4.951715 ACATCCATGCATGTGACAAGTAAT 59.048 37.500 24.58 3.23 35.57 1.89
2562 2642 5.419788 ACATCCATGCATGTGACAAGTAATT 59.580 36.000 24.58 2.58 35.57 1.40
2563 2643 5.565592 TCCATGCATGTGACAAGTAATTC 57.434 39.130 24.58 0.00 0.00 2.17
2564 2644 4.398988 TCCATGCATGTGACAAGTAATTCC 59.601 41.667 24.58 0.00 0.00 3.01
2565 2645 4.158209 CCATGCATGTGACAAGTAATTCCA 59.842 41.667 24.58 0.00 0.00 3.53
2566 2646 5.336610 CCATGCATGTGACAAGTAATTCCAA 60.337 40.000 24.58 0.00 0.00 3.53
2567 2647 5.781210 TGCATGTGACAAGTAATTCCAAA 57.219 34.783 0.00 0.00 0.00 3.28
2568 2648 5.527951 TGCATGTGACAAGTAATTCCAAAC 58.472 37.500 0.00 0.00 0.00 2.93
2569 2649 4.616802 GCATGTGACAAGTAATTCCAAACG 59.383 41.667 0.00 0.00 0.00 3.60
2570 2650 5.757886 CATGTGACAAGTAATTCCAAACGT 58.242 37.500 0.00 0.00 0.00 3.99
2571 2651 6.566942 GCATGTGACAAGTAATTCCAAACGTA 60.567 38.462 0.00 0.00 0.00 3.57
2572 2652 6.922247 TGTGACAAGTAATTCCAAACGTAA 57.078 33.333 0.00 0.00 0.00 3.18
2574 2654 6.017770 TGTGACAAGTAATTCCAAACGTAAGG 60.018 38.462 0.00 0.00 46.39 2.69
2575 2655 6.203338 GTGACAAGTAATTCCAAACGTAAGGA 59.797 38.462 4.88 4.88 46.39 3.36
2576 2656 6.425721 TGACAAGTAATTCCAAACGTAAGGAG 59.574 38.462 8.66 0.00 46.39 3.69
2577 2657 6.293698 ACAAGTAATTCCAAACGTAAGGAGT 58.706 36.000 8.66 4.05 46.39 3.85
2578 2658 7.444299 ACAAGTAATTCCAAACGTAAGGAGTA 58.556 34.615 8.66 4.07 46.39 2.59
2579 2659 8.098912 ACAAGTAATTCCAAACGTAAGGAGTAT 58.901 33.333 8.66 0.00 46.39 2.12
2580 2660 9.590451 CAAGTAATTCCAAACGTAAGGAGTATA 57.410 33.333 8.66 2.61 46.39 1.47
2582 2662 9.978044 AGTAATTCCAAACGTAAGGAGTATATC 57.022 33.333 8.66 1.49 46.39 1.63
2583 2663 9.754382 GTAATTCCAAACGTAAGGAGTATATCA 57.246 33.333 8.66 0.00 46.39 2.15
2586 2666 9.924650 ATTCCAAACGTAAGGAGTATATCATAC 57.075 33.333 8.66 0.00 46.39 2.39
2587 2667 8.467963 TCCAAACGTAAGGAGTATATCATACA 57.532 34.615 4.88 0.00 46.39 2.29
2588 2668 9.085645 TCCAAACGTAAGGAGTATATCATACAT 57.914 33.333 4.88 0.00 46.39 2.29
2589 2669 9.355215 CCAAACGTAAGGAGTATATCATACATC 57.645 37.037 0.00 0.00 46.39 3.06
2647 2727 9.646522 TTCTACCTTAAATACGTATTAGGTCCT 57.353 33.333 31.96 18.58 36.52 3.85
2668 2748 9.327731 GGTCCTATATATATATGAAAGGAGGGG 57.672 40.741 17.67 2.52 0.00 4.79
2669 2749 9.900112 GTCCTATATATATATGAAAGGAGGGGT 57.100 37.037 17.67 0.00 0.00 4.95
2679 2759 8.712228 ATATGAAAGGAGGGGTATGAAAATTC 57.288 34.615 0.00 0.00 0.00 2.17
2680 2760 4.947388 TGAAAGGAGGGGTATGAAAATTCG 59.053 41.667 0.00 0.00 0.00 3.34
2681 2761 3.577805 AGGAGGGGTATGAAAATTCGG 57.422 47.619 0.00 0.00 0.00 4.30
2682 2762 3.120108 AGGAGGGGTATGAAAATTCGGA 58.880 45.455 0.00 0.00 0.00 4.55
2683 2763 3.136626 AGGAGGGGTATGAAAATTCGGAG 59.863 47.826 0.00 0.00 0.00 4.63
2684 2764 3.135895 GGAGGGGTATGAAAATTCGGAGA 59.864 47.826 0.00 0.00 0.00 3.71
2685 2765 4.384868 GGAGGGGTATGAAAATTCGGAGAA 60.385 45.833 0.00 0.00 45.90 2.87
2686 2766 5.187621 AGGGGTATGAAAATTCGGAGAAA 57.812 39.130 0.00 0.00 45.90 2.52
2687 2767 5.576128 AGGGGTATGAAAATTCGGAGAAAA 58.424 37.500 0.00 0.00 45.90 2.29
2688 2768 5.652452 AGGGGTATGAAAATTCGGAGAAAAG 59.348 40.000 0.00 0.00 45.90 2.27
2689 2769 5.340803 GGGTATGAAAATTCGGAGAAAAGC 58.659 41.667 0.00 0.00 45.90 3.51
2690 2770 5.340803 GGTATGAAAATTCGGAGAAAAGCC 58.659 41.667 0.00 0.00 45.90 4.35
2691 2771 5.105917 GGTATGAAAATTCGGAGAAAAGCCA 60.106 40.000 0.00 0.00 45.90 4.75
2692 2772 4.237349 TGAAAATTCGGAGAAAAGCCAC 57.763 40.909 0.00 0.00 45.90 5.01
2693 2773 3.888930 TGAAAATTCGGAGAAAAGCCACT 59.111 39.130 0.00 0.00 45.90 4.00
2694 2774 4.340950 TGAAAATTCGGAGAAAAGCCACTT 59.659 37.500 0.00 0.00 45.90 3.16
2695 2775 3.923017 AATTCGGAGAAAAGCCACTTG 57.077 42.857 0.00 0.00 45.90 3.16
2696 2776 2.341846 TTCGGAGAAAAGCCACTTGT 57.658 45.000 0.00 0.00 45.90 3.16
2697 2777 1.878953 TCGGAGAAAAGCCACTTGTC 58.121 50.000 0.00 0.00 0.00 3.18
2698 2778 0.875059 CGGAGAAAAGCCACTTGTCC 59.125 55.000 0.00 0.00 28.44 4.02
2699 2779 1.248486 GGAGAAAAGCCACTTGTCCC 58.752 55.000 0.00 0.00 28.44 4.46
2700 2780 1.478654 GGAGAAAAGCCACTTGTCCCA 60.479 52.381 0.00 0.00 28.44 4.37
2701 2781 2.306847 GAGAAAAGCCACTTGTCCCAA 58.693 47.619 0.00 0.00 28.44 4.12
2702 2782 2.693074 GAGAAAAGCCACTTGTCCCAAA 59.307 45.455 0.00 0.00 28.44 3.28
2703 2783 3.103742 AGAAAAGCCACTTGTCCCAAAA 58.896 40.909 0.00 0.00 28.44 2.44
2704 2784 3.132824 AGAAAAGCCACTTGTCCCAAAAG 59.867 43.478 0.00 0.00 28.44 2.27
2705 2785 2.452600 AAGCCACTTGTCCCAAAAGA 57.547 45.000 0.00 0.00 0.00 2.52
2706 2786 1.986882 AGCCACTTGTCCCAAAAGAG 58.013 50.000 0.00 0.00 0.00 2.85
2707 2787 1.494721 AGCCACTTGTCCCAAAAGAGA 59.505 47.619 0.00 0.00 0.00 3.10
2708 2788 2.091885 AGCCACTTGTCCCAAAAGAGAA 60.092 45.455 0.00 0.00 0.00 2.87
2709 2789 2.693074 GCCACTTGTCCCAAAAGAGAAA 59.307 45.455 0.00 0.00 0.00 2.52
2710 2790 3.132111 GCCACTTGTCCCAAAAGAGAAAA 59.868 43.478 0.00 0.00 0.00 2.29
2711 2791 4.737649 GCCACTTGTCCCAAAAGAGAAAAG 60.738 45.833 0.00 0.00 0.00 2.27
2712 2792 4.363138 CACTTGTCCCAAAAGAGAAAAGC 58.637 43.478 0.00 0.00 0.00 3.51
2713 2793 3.384789 ACTTGTCCCAAAAGAGAAAAGCC 59.615 43.478 0.00 0.00 0.00 4.35
2714 2794 3.025322 TGTCCCAAAAGAGAAAAGCCA 57.975 42.857 0.00 0.00 0.00 4.75
2715 2795 2.693074 TGTCCCAAAAGAGAAAAGCCAC 59.307 45.455 0.00 0.00 0.00 5.01
2716 2796 2.959030 GTCCCAAAAGAGAAAAGCCACT 59.041 45.455 0.00 0.00 0.00 4.00
2717 2797 3.384789 GTCCCAAAAGAGAAAAGCCACTT 59.615 43.478 0.00 0.00 0.00 3.16
2718 2798 3.384467 TCCCAAAAGAGAAAAGCCACTTG 59.616 43.478 0.00 0.00 0.00 3.16
2719 2799 3.132824 CCCAAAAGAGAAAAGCCACTTGT 59.867 43.478 0.00 0.00 0.00 3.16
2720 2800 4.363138 CCAAAAGAGAAAAGCCACTTGTC 58.637 43.478 0.00 0.00 0.00 3.18
2721 2801 4.363138 CAAAAGAGAAAAGCCACTTGTCC 58.637 43.478 0.00 0.00 28.44 4.02
2722 2802 2.278332 AGAGAAAAGCCACTTGTCCC 57.722 50.000 0.00 0.00 28.44 4.46
2723 2803 1.494721 AGAGAAAAGCCACTTGTCCCA 59.505 47.619 0.00 0.00 28.44 4.37
2724 2804 2.091885 AGAGAAAAGCCACTTGTCCCAA 60.092 45.455 0.00 0.00 28.44 4.12
2725 2805 2.693074 GAGAAAAGCCACTTGTCCCAAA 59.307 45.455 0.00 0.00 28.44 3.28
2726 2806 3.103742 AGAAAAGCCACTTGTCCCAAAA 58.896 40.909 0.00 0.00 28.44 2.44
2727 2807 3.132824 AGAAAAGCCACTTGTCCCAAAAG 59.867 43.478 0.00 0.00 28.44 2.27
2728 2808 2.452600 AAGCCACTTGTCCCAAAAGA 57.547 45.000 0.00 0.00 0.00 2.52
2729 2809 1.986882 AGCCACTTGTCCCAAAAGAG 58.013 50.000 0.00 0.00 0.00 2.85
2730 2810 1.494721 AGCCACTTGTCCCAAAAGAGA 59.505 47.619 0.00 0.00 0.00 3.10
2731 2811 2.091885 AGCCACTTGTCCCAAAAGAGAA 60.092 45.455 0.00 0.00 0.00 2.87
2732 2812 2.294512 GCCACTTGTCCCAAAAGAGAAG 59.705 50.000 0.00 0.00 41.62 2.85
2733 2813 3.820557 CCACTTGTCCCAAAAGAGAAGA 58.179 45.455 5.55 0.00 38.99 2.87
2734 2814 3.817647 CCACTTGTCCCAAAAGAGAAGAG 59.182 47.826 5.55 0.00 38.99 2.85
2735 2815 3.817647 CACTTGTCCCAAAAGAGAAGAGG 59.182 47.826 5.55 0.00 38.99 3.69
2736 2816 3.181439 ACTTGTCCCAAAAGAGAAGAGGG 60.181 47.826 5.55 0.00 38.99 4.30
2737 2817 1.073923 TGTCCCAAAAGAGAAGAGGGC 59.926 52.381 0.00 0.00 39.42 5.19
2738 2818 1.073923 GTCCCAAAAGAGAAGAGGGCA 59.926 52.381 0.00 0.00 39.42 5.36
2739 2819 1.073923 TCCCAAAAGAGAAGAGGGCAC 59.926 52.381 0.00 0.00 39.42 5.01
2740 2820 1.202927 CCCAAAAGAGAAGAGGGCACA 60.203 52.381 0.00 0.00 31.81 4.57
2741 2821 2.586425 CCAAAAGAGAAGAGGGCACAA 58.414 47.619 0.00 0.00 0.00 3.33
2742 2822 2.294512 CCAAAAGAGAAGAGGGCACAAC 59.705 50.000 0.00 0.00 0.00 3.32
2743 2823 2.278332 AAAGAGAAGAGGGCACAACC 57.722 50.000 0.00 0.00 37.93 3.77
2754 2834 2.741759 GGCACAACCCATTAGTTTGG 57.258 50.000 0.00 0.00 36.46 3.28
2755 2835 1.967779 GGCACAACCCATTAGTTTGGT 59.032 47.619 0.00 0.00 34.77 3.67
2756 2836 3.158676 GGCACAACCCATTAGTTTGGTA 58.841 45.455 0.00 0.00 34.77 3.25
2757 2837 3.192633 GGCACAACCCATTAGTTTGGTAG 59.807 47.826 0.00 0.00 34.77 3.18
2758 2838 3.192633 GCACAACCCATTAGTTTGGTAGG 59.807 47.826 0.00 0.00 34.77 3.18
2759 2839 3.761752 CACAACCCATTAGTTTGGTAGGG 59.238 47.826 0.00 0.00 42.07 3.53
2760 2840 3.245479 ACAACCCATTAGTTTGGTAGGGG 60.245 47.826 0.00 0.00 40.64 4.79
2761 2841 1.927371 ACCCATTAGTTTGGTAGGGGG 59.073 52.381 0.00 0.00 40.64 5.40
2781 2861 3.001514 GGCTTGGCCCTCTGATGA 58.998 61.111 0.00 0.00 44.06 2.92
2782 2862 1.535685 GGCTTGGCCCTCTGATGAT 59.464 57.895 0.00 0.00 44.06 2.45
2783 2863 0.767375 GGCTTGGCCCTCTGATGATA 59.233 55.000 0.00 0.00 44.06 2.15
2784 2864 1.353694 GGCTTGGCCCTCTGATGATAT 59.646 52.381 0.00 0.00 44.06 1.63
2785 2865 2.573462 GGCTTGGCCCTCTGATGATATA 59.427 50.000 0.00 0.00 44.06 0.86
2786 2866 3.201708 GGCTTGGCCCTCTGATGATATAT 59.798 47.826 0.00 0.00 44.06 0.86
2787 2867 4.410228 GGCTTGGCCCTCTGATGATATATA 59.590 45.833 0.00 0.00 44.06 0.86
2788 2868 5.072872 GGCTTGGCCCTCTGATGATATATAT 59.927 44.000 0.00 0.00 44.06 0.86
2789 2869 6.270927 GGCTTGGCCCTCTGATGATATATATA 59.729 42.308 0.00 0.00 44.06 0.86
2790 2870 7.202130 GGCTTGGCCCTCTGATGATATATATAA 60.202 40.741 0.00 0.00 44.06 0.98
2791 2871 8.381636 GCTTGGCCCTCTGATGATATATATAAT 58.618 37.037 0.00 0.00 0.00 1.28
2792 2872 9.941325 CTTGGCCCTCTGATGATATATATAATC 57.059 37.037 11.87 11.87 0.00 1.75
2793 2873 9.451206 TTGGCCCTCTGATGATATATATAATCA 57.549 33.333 18.26 18.26 33.53 2.57
2794 2874 9.625438 TGGCCCTCTGATGATATATATAATCAT 57.375 33.333 19.24 10.36 34.01 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.887071 AGTGTCATGTGTTAAAAAGCCTCA 59.113 37.500 0.00 0.00 0.00 3.86
3 4 7.309194 GGAATAGTGTCATGTGTTAAAAAGCCT 60.309 37.037 0.00 0.00 0.00 4.58
5 6 7.593825 AGGAATAGTGTCATGTGTTAAAAAGC 58.406 34.615 0.00 0.00 0.00 3.51
6 7 8.237267 GGAGGAATAGTGTCATGTGTTAAAAAG 58.763 37.037 0.00 0.00 0.00 2.27
7 8 7.942341 AGGAGGAATAGTGTCATGTGTTAAAAA 59.058 33.333 0.00 0.00 0.00 1.94
8 9 7.458397 AGGAGGAATAGTGTCATGTGTTAAAA 58.542 34.615 0.00 0.00 0.00 1.52
9 10 7.016153 AGGAGGAATAGTGTCATGTGTTAAA 57.984 36.000 0.00 0.00 0.00 1.52
10 11 6.351881 GGAGGAGGAATAGTGTCATGTGTTAA 60.352 42.308 0.00 0.00 0.00 2.01
11 12 5.128827 GGAGGAGGAATAGTGTCATGTGTTA 59.871 44.000 0.00 0.00 0.00 2.41
12 13 4.080863 GGAGGAGGAATAGTGTCATGTGTT 60.081 45.833 0.00 0.00 0.00 3.32
13 14 3.452627 GGAGGAGGAATAGTGTCATGTGT 59.547 47.826 0.00 0.00 0.00 3.72
14 15 3.181461 GGGAGGAGGAATAGTGTCATGTG 60.181 52.174 0.00 0.00 0.00 3.21
15 16 3.041946 GGGAGGAGGAATAGTGTCATGT 58.958 50.000 0.00 0.00 0.00 3.21
16 17 2.036475 CGGGAGGAGGAATAGTGTCATG 59.964 54.545 0.00 0.00 0.00 3.07
17 18 2.320781 CGGGAGGAGGAATAGTGTCAT 58.679 52.381 0.00 0.00 0.00 3.06
18 19 1.776662 CGGGAGGAGGAATAGTGTCA 58.223 55.000 0.00 0.00 0.00 3.58
32 33 0.328258 ACAAATTCCTGGTCCGGGAG 59.672 55.000 19.25 10.52 40.34 4.30
33 34 0.326927 GACAAATTCCTGGTCCGGGA 59.673 55.000 16.23 16.23 37.09 5.14
34 35 0.328258 AGACAAATTCCTGGTCCGGG 59.672 55.000 10.99 10.99 31.99 5.73
35 36 2.200373 AAGACAAATTCCTGGTCCGG 57.800 50.000 0.00 0.00 31.99 5.14
36 37 4.584327 AAAAAGACAAATTCCTGGTCCG 57.416 40.909 0.00 0.00 31.99 4.79
54 55 6.030849 CGTTGAAATGTGACCTGTACAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
55 56 5.124138 ACGTTGAAATGTGACCTGTACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
56 57 4.636648 ACGTTGAAATGTGACCTGTACAAA 59.363 37.500 0.00 0.00 0.00 2.83
57 58 4.193090 ACGTTGAAATGTGACCTGTACAA 58.807 39.130 0.00 0.00 0.00 2.41
58 59 3.799366 ACGTTGAAATGTGACCTGTACA 58.201 40.909 0.00 0.00 0.00 2.90
59 60 4.806342 AACGTTGAAATGTGACCTGTAC 57.194 40.909 0.00 0.00 0.00 2.90
60 61 5.821516 AAAACGTTGAAATGTGACCTGTA 57.178 34.783 0.00 0.00 0.00 2.74
61 62 4.712122 AAAACGTTGAAATGTGACCTGT 57.288 36.364 0.00 0.00 0.00 4.00
62 63 5.098893 TGAAAAACGTTGAAATGTGACCTG 58.901 37.500 0.00 0.00 0.00 4.00
63 64 5.317733 TGAAAAACGTTGAAATGTGACCT 57.682 34.783 0.00 0.00 0.00 3.85
64 65 6.475402 AGAATGAAAAACGTTGAAATGTGACC 59.525 34.615 0.00 0.00 0.00 4.02
65 66 7.219917 TCAGAATGAAAAACGTTGAAATGTGAC 59.780 33.333 0.00 0.00 45.97 3.67
66 67 7.254137 TCAGAATGAAAAACGTTGAAATGTGA 58.746 30.769 0.00 0.00 45.97 3.58
67 68 7.448588 TCAGAATGAAAAACGTTGAAATGTG 57.551 32.000 0.00 0.00 45.97 3.21
84 85 8.028354 TGCCTATGTGTGTAAAATTTCAGAATG 58.972 33.333 0.00 0.00 37.54 2.67
85 86 8.121305 TGCCTATGTGTGTAAAATTTCAGAAT 57.879 30.769 0.00 0.00 0.00 2.40
86 87 7.517614 TGCCTATGTGTGTAAAATTTCAGAA 57.482 32.000 0.00 0.00 0.00 3.02
87 88 7.701539 ATGCCTATGTGTGTAAAATTTCAGA 57.298 32.000 0.00 0.00 0.00 3.27
88 89 9.289303 GTTATGCCTATGTGTGTAAAATTTCAG 57.711 33.333 0.00 0.00 0.00 3.02
89 90 8.797438 TGTTATGCCTATGTGTGTAAAATTTCA 58.203 29.630 0.00 0.00 0.00 2.69
90 91 9.801873 ATGTTATGCCTATGTGTGTAAAATTTC 57.198 29.630 0.00 0.00 0.00 2.17
93 94 9.627123 AGTATGTTATGCCTATGTGTGTAAAAT 57.373 29.630 0.00 0.00 0.00 1.82
94 95 9.456147 AAGTATGTTATGCCTATGTGTGTAAAA 57.544 29.630 0.00 0.00 0.00 1.52
95 96 8.888716 CAAGTATGTTATGCCTATGTGTGTAAA 58.111 33.333 0.00 0.00 0.00 2.01
96 97 8.044309 ACAAGTATGTTATGCCTATGTGTGTAA 58.956 33.333 0.00 0.00 35.91 2.41
97 98 7.561251 ACAAGTATGTTATGCCTATGTGTGTA 58.439 34.615 0.00 0.00 35.91 2.90
98 99 6.414732 ACAAGTATGTTATGCCTATGTGTGT 58.585 36.000 0.00 0.00 35.91 3.72
99 100 6.925610 ACAAGTATGTTATGCCTATGTGTG 57.074 37.500 0.00 0.00 35.91 3.82
113 114 8.940768 AAAATTGTGCAAGTAAACAAGTATGT 57.059 26.923 0.00 0.00 43.14 2.29
147 148 9.952188 AAAATTCAAACTTTTCGGTTTCAAAAA 57.048 22.222 0.00 0.00 37.32 1.94
148 149 9.387123 CAAAATTCAAACTTTTCGGTTTCAAAA 57.613 25.926 0.00 0.00 37.32 2.44
149 150 8.774586 TCAAAATTCAAACTTTTCGGTTTCAAA 58.225 25.926 0.00 0.00 37.32 2.69
150 151 8.311650 TCAAAATTCAAACTTTTCGGTTTCAA 57.688 26.923 0.00 0.00 37.32 2.69
151 152 7.891183 TCAAAATTCAAACTTTTCGGTTTCA 57.109 28.000 0.00 0.00 37.32 2.69
152 153 9.767684 AAATCAAAATTCAAACTTTTCGGTTTC 57.232 25.926 0.00 0.00 37.32 2.78
153 154 9.553418 CAAATCAAAATTCAAACTTTTCGGTTT 57.447 25.926 0.00 0.00 39.62 3.27
154 155 8.726068 ACAAATCAAAATTCAAACTTTTCGGTT 58.274 25.926 0.00 0.00 0.00 4.44
155 156 8.262715 ACAAATCAAAATTCAAACTTTTCGGT 57.737 26.923 0.00 0.00 0.00 4.69
156 157 9.553418 AAACAAATCAAAATTCAAACTTTTCGG 57.447 25.926 0.00 0.00 0.00 4.30
195 196 3.554342 CTCCCGGGAGCCATGGAG 61.554 72.222 36.90 12.91 36.38 3.86
203 204 3.952628 GACGTTTGGCTCCCGGGAG 62.953 68.421 41.29 41.29 44.56 4.30
204 205 4.011517 GACGTTTGGCTCCCGGGA 62.012 66.667 25.06 25.06 0.00 5.14
207 208 4.675029 ACGGACGTTTGGCTCCCG 62.675 66.667 7.93 7.93 45.09 5.14
208 209 2.281276 AACGGACGTTTGGCTCCC 60.281 61.111 3.99 0.00 34.22 4.30
209 210 1.289800 GAGAACGGACGTTTGGCTCC 61.290 60.000 11.67 0.00 38.60 4.70
210 211 0.319641 AGAGAACGGACGTTTGGCTC 60.320 55.000 11.67 12.81 38.60 4.70
211 212 0.963962 TAGAGAACGGACGTTTGGCT 59.036 50.000 11.67 11.11 38.60 4.75
212 213 1.659098 CATAGAGAACGGACGTTTGGC 59.341 52.381 11.67 4.66 38.60 4.52
213 214 2.921754 GACATAGAGAACGGACGTTTGG 59.078 50.000 11.67 1.57 38.60 3.28
214 215 3.834610 AGACATAGAGAACGGACGTTTG 58.165 45.455 11.67 7.94 38.60 2.93
215 216 4.940046 TCTAGACATAGAGAACGGACGTTT 59.060 41.667 11.67 2.17 34.28 3.60
216 217 4.511527 TCTAGACATAGAGAACGGACGTT 58.488 43.478 10.13 10.13 35.66 3.99
217 218 4.134379 TCTAGACATAGAGAACGGACGT 57.866 45.455 0.00 0.00 32.93 4.34
218 219 5.334260 GGATTCTAGACATAGAGAACGGACG 60.334 48.000 0.00 0.00 39.21 4.79
219 220 5.531659 TGGATTCTAGACATAGAGAACGGAC 59.468 44.000 0.00 0.00 39.21 4.79
220 221 5.691896 TGGATTCTAGACATAGAGAACGGA 58.308 41.667 0.00 0.00 39.21 4.69
221 222 5.765677 TCTGGATTCTAGACATAGAGAACGG 59.234 44.000 0.00 0.00 39.21 4.44
222 223 6.869315 TCTGGATTCTAGACATAGAGAACG 57.131 41.667 0.00 0.00 39.21 3.95
223 224 8.458573 TCTTCTGGATTCTAGACATAGAGAAC 57.541 38.462 0.00 0.00 39.21 3.01
224 225 7.723616 CCTCTTCTGGATTCTAGACATAGAGAA 59.276 40.741 20.44 9.58 39.21 2.87
225 226 7.073088 TCCTCTTCTGGATTCTAGACATAGAGA 59.927 40.741 20.44 11.30 39.21 3.10
226 227 7.230747 TCCTCTTCTGGATTCTAGACATAGAG 58.769 42.308 15.29 15.29 39.21 2.43
227 228 7.155442 TCCTCTTCTGGATTCTAGACATAGA 57.845 40.000 0.00 0.19 36.20 1.98
228 229 7.723616 TCTTCCTCTTCTGGATTCTAGACATAG 59.276 40.741 0.00 0.00 35.83 2.23
229 230 7.587258 TCTTCCTCTTCTGGATTCTAGACATA 58.413 38.462 0.00 0.00 35.83 2.29
230 231 6.439487 TCTTCCTCTTCTGGATTCTAGACAT 58.561 40.000 0.00 0.00 35.83 3.06
231 232 5.832221 TCTTCCTCTTCTGGATTCTAGACA 58.168 41.667 0.00 0.00 35.83 3.41
232 233 6.783708 TTCTTCCTCTTCTGGATTCTAGAC 57.216 41.667 0.00 0.00 35.83 2.59
233 234 7.798710 TTTTCTTCCTCTTCTGGATTCTAGA 57.201 36.000 0.00 0.00 35.83 2.43
236 237 9.813826 TTTATTTTTCTTCCTCTTCTGGATTCT 57.186 29.630 0.00 0.00 35.83 2.40
238 239 9.029368 CCTTTATTTTTCTTCCTCTTCTGGATT 57.971 33.333 0.00 0.00 35.83 3.01
239 240 7.123397 GCCTTTATTTTTCTTCCTCTTCTGGAT 59.877 37.037 0.00 0.00 35.83 3.41
240 241 6.434340 GCCTTTATTTTTCTTCCTCTTCTGGA 59.566 38.462 0.00 0.00 0.00 3.86
241 242 6.623767 CGCCTTTATTTTTCTTCCTCTTCTGG 60.624 42.308 0.00 0.00 0.00 3.86
242 243 6.317857 CGCCTTTATTTTTCTTCCTCTTCTG 58.682 40.000 0.00 0.00 0.00 3.02
250 251 2.526077 CGCCCGCCTTTATTTTTCTTC 58.474 47.619 0.00 0.00 0.00 2.87
253 254 0.179121 CCCGCCCGCCTTTATTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
296 297 0.466124 CGGGATGGTTTCTCTCCTCC 59.534 60.000 0.00 0.00 0.00 4.30
951 966 2.110899 AGAGGGAAAGAGAGAGGTGTGA 59.889 50.000 0.00 0.00 0.00 3.58
952 967 2.495669 GAGAGGGAAAGAGAGAGGTGTG 59.504 54.545 0.00 0.00 0.00 3.82
953 968 2.558800 GGAGAGGGAAAGAGAGAGGTGT 60.559 54.545 0.00 0.00 0.00 4.16
965 980 1.392534 GTCAGAGGGGGAGAGGGAA 59.607 63.158 0.00 0.00 0.00 3.97
1156 1173 1.600663 GGTATCGACGGCAGACTGATG 60.601 57.143 6.65 0.00 0.00 3.07
1158 1175 1.712018 CGGTATCGACGGCAGACTGA 61.712 60.000 6.65 0.00 39.00 3.41
1584 1601 4.500116 GACTCCCAGAGCGCCGTC 62.500 72.222 2.29 0.00 32.04 4.79
1617 1634 2.503061 CTCATCCTGCCCTCCACG 59.497 66.667 0.00 0.00 0.00 4.94
1682 1699 0.873054 CATTGCGAGCATGATCTCCC 59.127 55.000 9.64 0.00 0.00 4.30
1817 1846 2.677875 CTGCTTGGTGGGGCTTCC 60.678 66.667 0.00 0.00 0.00 3.46
1830 1859 1.516365 CTGCTGTCTTGCTTGCTGCT 61.516 55.000 0.00 0.00 43.37 4.24
1899 1948 5.677567 GACTCCGGGAATGGTAGAATTTAA 58.322 41.667 0.00 0.00 0.00 1.52
1900 1949 4.202182 CGACTCCGGGAATGGTAGAATTTA 60.202 45.833 0.00 0.00 0.00 1.40
1901 1950 3.431766 CGACTCCGGGAATGGTAGAATTT 60.432 47.826 0.00 0.00 0.00 1.82
1902 1951 2.102588 CGACTCCGGGAATGGTAGAATT 59.897 50.000 0.00 0.00 0.00 2.17
1920 1969 3.201290 ACAGAAGAATGATGCATCCGAC 58.799 45.455 23.67 13.83 0.00 4.79
1921 1970 3.548745 ACAGAAGAATGATGCATCCGA 57.451 42.857 23.67 6.72 0.00 4.55
2025 2088 2.074547 GAAACCATTGACGGTCTCGA 57.925 50.000 9.88 0.00 38.76 4.04
2033 2096 3.377172 CCCACTAATCCGAAACCATTGAC 59.623 47.826 0.00 0.00 0.00 3.18
2034 2097 3.264706 TCCCACTAATCCGAAACCATTGA 59.735 43.478 0.00 0.00 0.00 2.57
2044 2107 5.523916 CACTCATTTAGTTCCCACTAATCCG 59.476 44.000 0.00 0.00 43.65 4.18
2053 2116 4.338400 GCCCATTACACTCATTTAGTTCCC 59.662 45.833 0.00 0.00 35.76 3.97
2086 2150 1.571919 ATAGATCACGAAACAGCGGC 58.428 50.000 0.00 0.00 35.12 6.53
2159 2226 3.242413 GCACATAGACAATTAGTGGCACG 60.242 47.826 12.71 0.00 37.96 5.34
2172 2239 5.673337 TCAACAAAGTCAAGCACATAGAC 57.327 39.130 0.00 0.00 0.00 2.59
2196 2263 3.304257 CGATCCTCGCAGAATCTAACTG 58.696 50.000 0.00 0.00 34.09 3.16
2210 2278 1.689273 ACAAGTCCATAGCCGATCCTC 59.311 52.381 0.00 0.00 0.00 3.71
2221 2289 1.561542 GACCCATCCTCACAAGTCCAT 59.438 52.381 0.00 0.00 0.00 3.41
2316 2392 9.643652 GAGCGATTATAAGAAGTCAAAGAATTG 57.356 33.333 0.00 0.00 37.92 2.32
2337 2417 9.884465 CTCGAATAATGTATATATCATGAGCGA 57.116 33.333 0.09 0.00 0.00 4.93
2338 2418 9.122613 CCTCGAATAATGTATATATCATGAGCG 57.877 37.037 0.09 0.00 0.00 5.03
2339 2419 8.920665 GCCTCGAATAATGTATATATCATGAGC 58.079 37.037 0.09 0.00 0.00 4.26
2344 2424 9.642343 AGGTAGCCTCGAATAATGTATATATCA 57.358 33.333 0.00 0.00 0.00 2.15
2349 2429 9.918630 GTTAAAGGTAGCCTCGAATAATGTATA 57.081 33.333 0.00 0.00 30.89 1.47
2350 2430 7.876582 GGTTAAAGGTAGCCTCGAATAATGTAT 59.123 37.037 0.00 0.00 30.89 2.29
2351 2431 7.147689 TGGTTAAAGGTAGCCTCGAATAATGTA 60.148 37.037 0.00 0.00 31.98 2.29
2352 2432 6.053650 GGTTAAAGGTAGCCTCGAATAATGT 58.946 40.000 0.00 0.00 30.89 2.71
2353 2433 6.018180 GTGGTTAAAGGTAGCCTCGAATAATG 60.018 42.308 0.00 0.00 31.98 1.90
2354 2434 6.053650 GTGGTTAAAGGTAGCCTCGAATAAT 58.946 40.000 0.00 0.00 31.98 1.28
2355 2435 5.422145 GTGGTTAAAGGTAGCCTCGAATAA 58.578 41.667 0.00 0.00 31.98 1.40
2356 2436 4.440525 CGTGGTTAAAGGTAGCCTCGAATA 60.441 45.833 5.50 0.00 45.19 1.75
2357 2437 3.677976 CGTGGTTAAAGGTAGCCTCGAAT 60.678 47.826 5.50 0.00 45.19 3.34
2358 2438 2.353011 CGTGGTTAAAGGTAGCCTCGAA 60.353 50.000 5.50 0.00 45.19 3.71
2359 2439 1.203052 CGTGGTTAAAGGTAGCCTCGA 59.797 52.381 5.50 0.00 45.19 4.04
2360 2440 1.636988 CGTGGTTAAAGGTAGCCTCG 58.363 55.000 0.00 0.00 39.91 4.63
2361 2441 1.406477 CCCGTGGTTAAAGGTAGCCTC 60.406 57.143 0.00 0.00 31.98 4.70
2362 2442 0.616891 CCCGTGGTTAAAGGTAGCCT 59.383 55.000 0.00 0.00 31.98 4.58
2363 2443 0.325933 ACCCGTGGTTAAAGGTAGCC 59.674 55.000 0.00 0.00 27.29 3.93
2364 2444 1.002315 TGACCCGTGGTTAAAGGTAGC 59.998 52.381 0.00 0.00 35.25 3.58
2365 2445 2.933928 GCTGACCCGTGGTTAAAGGTAG 60.934 54.545 0.00 0.00 35.25 3.18
2366 2446 1.002315 GCTGACCCGTGGTTAAAGGTA 59.998 52.381 0.00 0.00 35.25 3.08
2367 2447 0.250597 GCTGACCCGTGGTTAAAGGT 60.251 55.000 0.00 0.00 35.25 3.50
2368 2448 0.250553 TGCTGACCCGTGGTTAAAGG 60.251 55.000 0.00 0.00 35.25 3.11
2369 2449 1.156736 CTGCTGACCCGTGGTTAAAG 58.843 55.000 0.00 0.00 35.25 1.85
2370 2450 0.250553 CCTGCTGACCCGTGGTTAAA 60.251 55.000 0.00 0.00 35.25 1.52
2371 2451 1.373435 CCTGCTGACCCGTGGTTAA 59.627 57.895 0.00 0.00 35.25 2.01
2372 2452 2.589157 CCCTGCTGACCCGTGGTTA 61.589 63.158 0.00 0.00 35.25 2.85
2373 2453 3.953775 CCCTGCTGACCCGTGGTT 61.954 66.667 0.00 0.00 35.25 3.67
2375 2455 2.521958 CTAACCCTGCTGACCCGTGG 62.522 65.000 0.00 0.00 0.00 4.94
2376 2456 1.079127 CTAACCCTGCTGACCCGTG 60.079 63.158 0.00 0.00 0.00 4.94
2377 2457 2.955881 GCTAACCCTGCTGACCCGT 61.956 63.158 0.00 0.00 0.00 5.28
2378 2458 2.125106 GCTAACCCTGCTGACCCG 60.125 66.667 0.00 0.00 0.00 5.28
2379 2459 1.377333 GTGCTAACCCTGCTGACCC 60.377 63.158 0.00 0.00 0.00 4.46
2380 2460 0.250727 TTGTGCTAACCCTGCTGACC 60.251 55.000 0.00 0.00 0.00 4.02
2381 2461 1.470098 CATTGTGCTAACCCTGCTGAC 59.530 52.381 0.00 0.00 0.00 3.51
2382 2462 1.350684 TCATTGTGCTAACCCTGCTGA 59.649 47.619 0.00 0.00 0.00 4.26
2383 2463 1.470098 GTCATTGTGCTAACCCTGCTG 59.530 52.381 0.00 0.00 0.00 4.41
2384 2464 1.073763 TGTCATTGTGCTAACCCTGCT 59.926 47.619 0.00 0.00 0.00 4.24
2385 2465 1.533625 TGTCATTGTGCTAACCCTGC 58.466 50.000 0.00 0.00 0.00 4.85
2386 2466 2.159338 GCATGTCATTGTGCTAACCCTG 60.159 50.000 0.00 0.00 38.30 4.45
2387 2467 2.094675 GCATGTCATTGTGCTAACCCT 58.905 47.619 0.00 0.00 38.30 4.34
2388 2468 1.818060 TGCATGTCATTGTGCTAACCC 59.182 47.619 0.00 0.00 41.78 4.11
2389 2469 3.244976 GTTGCATGTCATTGTGCTAACC 58.755 45.455 0.00 0.00 41.78 2.85
2390 2470 3.899734 TGTTGCATGTCATTGTGCTAAC 58.100 40.909 0.00 3.12 41.78 2.34
2391 2471 4.487019 CATGTTGCATGTCATTGTGCTAA 58.513 39.130 0.00 0.00 41.78 3.09
2392 2472 3.673866 GCATGTTGCATGTCATTGTGCTA 60.674 43.478 10.31 0.00 44.26 3.49
2393 2473 2.929161 GCATGTTGCATGTCATTGTGCT 60.929 45.455 10.31 0.00 44.26 4.40
2394 2474 1.392168 GCATGTTGCATGTCATTGTGC 59.608 47.619 10.31 0.96 44.26 4.57
2409 2489 0.896923 ATTTCCCGCAACATGCATGT 59.103 45.000 26.61 26.61 45.36 3.21
2410 2490 2.012937 AATTTCCCGCAACATGCATG 57.987 45.000 25.09 25.09 45.36 4.06
2411 2491 2.766345 AAATTTCCCGCAACATGCAT 57.234 40.000 0.00 0.00 45.36 3.96
2412 2492 2.224137 TGAAAATTTCCCGCAACATGCA 60.224 40.909 3.00 0.00 45.36 3.96
2413 2493 2.411904 TGAAAATTTCCCGCAACATGC 58.588 42.857 3.00 0.00 40.69 4.06
2414 2494 4.608000 CGTTTGAAAATTTCCCGCAACATG 60.608 41.667 3.00 0.00 0.00 3.21
2415 2495 3.492756 CGTTTGAAAATTTCCCGCAACAT 59.507 39.130 3.00 0.00 0.00 2.71
2416 2496 2.860735 CGTTTGAAAATTTCCCGCAACA 59.139 40.909 3.00 0.00 0.00 3.33
2417 2497 3.117046 TCGTTTGAAAATTTCCCGCAAC 58.883 40.909 3.00 1.22 0.00 4.17
2418 2498 3.438297 TCGTTTGAAAATTTCCCGCAA 57.562 38.095 3.00 0.00 0.00 4.85
2419 2499 3.117046 GTTCGTTTGAAAATTTCCCGCA 58.883 40.909 3.00 0.00 35.46 5.69
2420 2500 3.117046 TGTTCGTTTGAAAATTTCCCGC 58.883 40.909 3.00 0.00 35.46 6.13
2421 2501 5.898630 ATTGTTCGTTTGAAAATTTCCCG 57.101 34.783 3.00 3.62 35.46 5.14
2422 2502 7.689299 TGAAATTGTTCGTTTGAAAATTTCCC 58.311 30.769 20.28 0.00 42.20 3.97
2423 2503 8.994881 GTTGAAATTGTTCGTTTGAAAATTTCC 58.005 29.630 20.28 11.76 42.20 3.13
2424 2504 9.535270 TGTTGAAATTGTTCGTTTGAAAATTTC 57.465 25.926 18.53 18.53 42.55 2.17
2425 2505 9.884465 TTGTTGAAATTGTTCGTTTGAAAATTT 57.116 22.222 0.00 0.00 37.42 1.82
2428 2508 9.884465 AAATTGTTGAAATTGTTCGTTTGAAAA 57.116 22.222 0.00 0.00 36.46 2.29
2429 2509 9.535270 GAAATTGTTGAAATTGTTCGTTTGAAA 57.465 25.926 0.00 0.00 36.46 2.69
2430 2510 8.930760 AGAAATTGTTGAAATTGTTCGTTTGAA 58.069 25.926 0.00 0.00 36.46 2.69
2431 2511 8.472683 AGAAATTGTTGAAATTGTTCGTTTGA 57.527 26.923 0.00 0.00 36.46 2.69
2467 2547 9.832445 GGATAGAGGAATACATAAAGTTGAACA 57.168 33.333 0.00 0.00 0.00 3.18
2468 2548 9.832445 TGGATAGAGGAATACATAAAGTTGAAC 57.168 33.333 0.00 0.00 0.00 3.18
2509 2589 9.764363 CAACTCTGTTATAGCCATTTCTATACA 57.236 33.333 0.00 0.00 32.82 2.29
2510 2590 9.982651 TCAACTCTGTTATAGCCATTTCTATAC 57.017 33.333 0.00 0.00 32.82 1.47
2513 2593 9.982651 GTATCAACTCTGTTATAGCCATTTCTA 57.017 33.333 0.00 0.00 0.00 2.10
2514 2594 8.486210 TGTATCAACTCTGTTATAGCCATTTCT 58.514 33.333 0.00 0.00 0.00 2.52
2515 2595 8.662781 TGTATCAACTCTGTTATAGCCATTTC 57.337 34.615 0.00 0.00 0.00 2.17
2516 2596 9.277783 GATGTATCAACTCTGTTATAGCCATTT 57.722 33.333 0.00 0.00 0.00 2.32
2517 2597 7.880195 GGATGTATCAACTCTGTTATAGCCATT 59.120 37.037 0.00 0.00 29.48 3.16
2518 2598 7.016563 TGGATGTATCAACTCTGTTATAGCCAT 59.983 37.037 0.00 0.00 32.59 4.40
2519 2599 6.326323 TGGATGTATCAACTCTGTTATAGCCA 59.674 38.462 0.00 0.00 34.14 4.75
2520 2600 6.759272 TGGATGTATCAACTCTGTTATAGCC 58.241 40.000 0.00 0.00 29.63 3.93
2521 2601 7.148507 GCATGGATGTATCAACTCTGTTATAGC 60.149 40.741 0.00 0.00 0.00 2.97
2522 2602 7.874528 TGCATGGATGTATCAACTCTGTTATAG 59.125 37.037 0.00 0.00 0.00 1.31
2523 2603 7.734942 TGCATGGATGTATCAACTCTGTTATA 58.265 34.615 0.00 0.00 0.00 0.98
2524 2604 6.594744 TGCATGGATGTATCAACTCTGTTAT 58.405 36.000 0.00 0.00 0.00 1.89
2525 2605 5.988287 TGCATGGATGTATCAACTCTGTTA 58.012 37.500 0.00 0.00 0.00 2.41
2526 2606 4.847198 TGCATGGATGTATCAACTCTGTT 58.153 39.130 0.00 0.00 0.00 3.16
2527 2607 4.492494 TGCATGGATGTATCAACTCTGT 57.508 40.909 0.00 0.00 0.00 3.41
2528 2608 4.820173 ACATGCATGGATGTATCAACTCTG 59.180 41.667 28.96 2.81 34.69 3.35
2529 2609 4.820173 CACATGCATGGATGTATCAACTCT 59.180 41.667 29.40 4.05 34.69 3.24
2530 2610 4.818005 TCACATGCATGGATGTATCAACTC 59.182 41.667 29.40 0.00 34.69 3.01
2531 2611 4.577693 GTCACATGCATGGATGTATCAACT 59.422 41.667 29.40 5.51 34.69 3.16
2532 2612 4.336153 TGTCACATGCATGGATGTATCAAC 59.664 41.667 29.40 23.03 34.69 3.18
2533 2613 4.525024 TGTCACATGCATGGATGTATCAA 58.475 39.130 29.40 14.48 34.69 2.57
2534 2614 4.153673 TGTCACATGCATGGATGTATCA 57.846 40.909 29.40 25.42 34.69 2.15
2535 2615 4.577693 ACTTGTCACATGCATGGATGTATC 59.422 41.667 29.40 23.55 34.69 2.24
2536 2616 4.529897 ACTTGTCACATGCATGGATGTAT 58.470 39.130 29.40 8.46 34.69 2.29
2537 2617 3.954200 ACTTGTCACATGCATGGATGTA 58.046 40.909 29.40 14.12 34.69 2.29
2538 2618 2.799017 ACTTGTCACATGCATGGATGT 58.201 42.857 29.41 25.39 37.01 3.06
2539 2619 4.968812 TTACTTGTCACATGCATGGATG 57.031 40.909 29.41 24.00 0.00 3.51
2540 2620 5.068198 GGAATTACTTGTCACATGCATGGAT 59.932 40.000 29.41 7.86 0.00 3.41
2541 2621 4.398988 GGAATTACTTGTCACATGCATGGA 59.601 41.667 29.41 20.17 0.00 3.41
2542 2622 4.158209 TGGAATTACTTGTCACATGCATGG 59.842 41.667 29.41 18.30 0.00 3.66
2543 2623 5.313520 TGGAATTACTTGTCACATGCATG 57.686 39.130 25.09 25.09 0.00 4.06
2544 2624 5.981088 TTGGAATTACTTGTCACATGCAT 57.019 34.783 0.00 0.00 0.00 3.96
2545 2625 5.527951 GTTTGGAATTACTTGTCACATGCA 58.472 37.500 0.00 0.00 0.00 3.96
2546 2626 4.616802 CGTTTGGAATTACTTGTCACATGC 59.383 41.667 0.00 0.00 0.00 4.06
2547 2627 5.757886 ACGTTTGGAATTACTTGTCACATG 58.242 37.500 0.00 0.00 0.00 3.21
2548 2628 7.308348 CCTTACGTTTGGAATTACTTGTCACAT 60.308 37.037 0.00 0.00 0.00 3.21
2549 2629 6.017770 CCTTACGTTTGGAATTACTTGTCACA 60.018 38.462 0.00 0.00 0.00 3.58
2550 2630 6.203338 TCCTTACGTTTGGAATTACTTGTCAC 59.797 38.462 0.00 0.00 0.00 3.67
2551 2631 6.289834 TCCTTACGTTTGGAATTACTTGTCA 58.710 36.000 0.00 0.00 0.00 3.58
2552 2632 6.426025 ACTCCTTACGTTTGGAATTACTTGTC 59.574 38.462 9.88 0.00 31.23 3.18
2553 2633 6.293698 ACTCCTTACGTTTGGAATTACTTGT 58.706 36.000 9.88 1.61 31.23 3.16
2554 2634 6.796705 ACTCCTTACGTTTGGAATTACTTG 57.203 37.500 9.88 1.10 31.23 3.16
2556 2636 9.978044 GATATACTCCTTACGTTTGGAATTACT 57.022 33.333 9.88 0.00 31.23 2.24
2557 2637 9.754382 TGATATACTCCTTACGTTTGGAATTAC 57.246 33.333 9.88 0.00 31.23 1.89
2560 2640 9.924650 GTATGATATACTCCTTACGTTTGGAAT 57.075 33.333 9.88 3.74 31.23 3.01
2561 2641 8.916062 TGTATGATATACTCCTTACGTTTGGAA 58.084 33.333 9.88 0.00 31.23 3.53
2562 2642 8.467963 TGTATGATATACTCCTTACGTTTGGA 57.532 34.615 0.00 0.43 0.00 3.53
2563 2643 9.355215 GATGTATGATATACTCCTTACGTTTGG 57.645 37.037 0.00 0.00 0.00 3.28
2621 2701 9.646522 AGGACCTAATACGTATTTAAGGTAGAA 57.353 33.333 29.90 10.75 35.71 2.10
2642 2722 9.327731 CCCCTCCTTTCATATATATATAGGACC 57.672 40.741 14.98 0.00 29.77 4.46
2643 2723 9.900112 ACCCCTCCTTTCATATATATATAGGAC 57.100 37.037 14.98 0.00 29.77 3.85
2653 2733 9.807921 GAATTTTCATACCCCTCCTTTCATATA 57.192 33.333 0.00 0.00 0.00 0.86
2654 2734 7.448469 CGAATTTTCATACCCCTCCTTTCATAT 59.552 37.037 0.00 0.00 0.00 1.78
2655 2735 6.770785 CGAATTTTCATACCCCTCCTTTCATA 59.229 38.462 0.00 0.00 0.00 2.15
2656 2736 5.594317 CGAATTTTCATACCCCTCCTTTCAT 59.406 40.000 0.00 0.00 0.00 2.57
2657 2737 4.947388 CGAATTTTCATACCCCTCCTTTCA 59.053 41.667 0.00 0.00 0.00 2.69
2658 2738 4.338400 CCGAATTTTCATACCCCTCCTTTC 59.662 45.833 0.00 0.00 0.00 2.62
2659 2739 4.017867 TCCGAATTTTCATACCCCTCCTTT 60.018 41.667 0.00 0.00 0.00 3.11
2660 2740 3.526019 TCCGAATTTTCATACCCCTCCTT 59.474 43.478 0.00 0.00 0.00 3.36
2661 2741 3.120108 TCCGAATTTTCATACCCCTCCT 58.880 45.455 0.00 0.00 0.00 3.69
2662 2742 3.135895 TCTCCGAATTTTCATACCCCTCC 59.864 47.826 0.00 0.00 0.00 4.30
2663 2743 4.417426 TCTCCGAATTTTCATACCCCTC 57.583 45.455 0.00 0.00 0.00 4.30
2664 2744 4.855298 TTCTCCGAATTTTCATACCCCT 57.145 40.909 0.00 0.00 0.00 4.79
2665 2745 5.678871 GCTTTTCTCCGAATTTTCATACCCC 60.679 44.000 0.00 0.00 0.00 4.95
2666 2746 5.340803 GCTTTTCTCCGAATTTTCATACCC 58.659 41.667 0.00 0.00 0.00 3.69
2667 2747 5.105917 TGGCTTTTCTCCGAATTTTCATACC 60.106 40.000 0.00 0.00 0.00 2.73
2668 2748 5.800438 GTGGCTTTTCTCCGAATTTTCATAC 59.200 40.000 0.00 0.00 0.00 2.39
2669 2749 5.710099 AGTGGCTTTTCTCCGAATTTTCATA 59.290 36.000 0.00 0.00 0.00 2.15
2670 2750 4.524328 AGTGGCTTTTCTCCGAATTTTCAT 59.476 37.500 0.00 0.00 0.00 2.57
2671 2751 3.888930 AGTGGCTTTTCTCCGAATTTTCA 59.111 39.130 0.00 0.00 0.00 2.69
2672 2752 4.505313 AGTGGCTTTTCTCCGAATTTTC 57.495 40.909 0.00 0.00 0.00 2.29
2673 2753 4.099419 ACAAGTGGCTTTTCTCCGAATTTT 59.901 37.500 0.00 0.00 0.00 1.82
2674 2754 3.636764 ACAAGTGGCTTTTCTCCGAATTT 59.363 39.130 0.00 0.00 0.00 1.82
2675 2755 3.222603 ACAAGTGGCTTTTCTCCGAATT 58.777 40.909 0.00 0.00 0.00 2.17
2676 2756 2.814336 GACAAGTGGCTTTTCTCCGAAT 59.186 45.455 0.00 0.00 0.00 3.34
2677 2757 2.218603 GACAAGTGGCTTTTCTCCGAA 58.781 47.619 0.00 0.00 0.00 4.30
2678 2758 1.542547 GGACAAGTGGCTTTTCTCCGA 60.543 52.381 0.00 0.00 0.00 4.55
2679 2759 0.875059 GGACAAGTGGCTTTTCTCCG 59.125 55.000 0.00 0.00 0.00 4.63
2680 2760 1.248486 GGGACAAGTGGCTTTTCTCC 58.752 55.000 0.00 0.00 0.00 3.71
2681 2761 1.981256 TGGGACAAGTGGCTTTTCTC 58.019 50.000 0.00 0.00 31.92 2.87
2694 2774 2.693074 GTGGCTTTTCTCTTTTGGGACA 59.307 45.455 0.00 0.00 0.00 4.02
2695 2775 2.959030 AGTGGCTTTTCTCTTTTGGGAC 59.041 45.455 0.00 0.00 0.00 4.46
2696 2776 3.312736 AGTGGCTTTTCTCTTTTGGGA 57.687 42.857 0.00 0.00 0.00 4.37
2697 2777 3.132824 ACAAGTGGCTTTTCTCTTTTGGG 59.867 43.478 0.00 0.00 0.00 4.12
2698 2778 4.363138 GACAAGTGGCTTTTCTCTTTTGG 58.637 43.478 0.00 0.00 0.00 3.28
2699 2779 4.363138 GGACAAGTGGCTTTTCTCTTTTG 58.637 43.478 0.00 0.00 0.00 2.44
2700 2780 3.384789 GGGACAAGTGGCTTTTCTCTTTT 59.615 43.478 0.00 0.00 0.00 2.27
2701 2781 2.959030 GGGACAAGTGGCTTTTCTCTTT 59.041 45.455 0.00 0.00 0.00 2.52
2702 2782 2.091885 TGGGACAAGTGGCTTTTCTCTT 60.092 45.455 0.00 0.00 31.92 2.85
2703 2783 1.494721 TGGGACAAGTGGCTTTTCTCT 59.505 47.619 0.00 0.00 31.92 3.10
2704 2784 1.981256 TGGGACAAGTGGCTTTTCTC 58.019 50.000 0.00 0.00 31.92 2.87
2717 2797 1.073923 GCCCTCTTCTCTTTTGGGACA 59.926 52.381 0.00 0.00 40.23 4.02
2718 2798 1.073923 TGCCCTCTTCTCTTTTGGGAC 59.926 52.381 0.00 0.00 40.23 4.46
2719 2799 1.073923 GTGCCCTCTTCTCTTTTGGGA 59.926 52.381 0.00 0.00 40.23 4.37
2720 2800 1.202927 TGTGCCCTCTTCTCTTTTGGG 60.203 52.381 0.00 0.00 40.74 4.12
2721 2801 2.276732 TGTGCCCTCTTCTCTTTTGG 57.723 50.000 0.00 0.00 0.00 3.28
2722 2802 2.294512 GGTTGTGCCCTCTTCTCTTTTG 59.705 50.000 0.00 0.00 0.00 2.44
2723 2803 2.587522 GGTTGTGCCCTCTTCTCTTTT 58.412 47.619 0.00 0.00 0.00 2.27
2724 2804 2.278332 GGTTGTGCCCTCTTCTCTTT 57.722 50.000 0.00 0.00 0.00 2.52
2735 2815 1.967779 ACCAAACTAATGGGTTGTGCC 59.032 47.619 0.00 0.00 45.18 5.01
2736 2816 3.192633 CCTACCAAACTAATGGGTTGTGC 59.807 47.826 0.00 0.00 45.18 4.57
2737 2817 3.761752 CCCTACCAAACTAATGGGTTGTG 59.238 47.826 0.00 0.00 45.18 3.33
2738 2818 3.245479 CCCCTACCAAACTAATGGGTTGT 60.245 47.826 0.00 0.00 45.18 3.32
2739 2819 3.361786 CCCCTACCAAACTAATGGGTTG 58.638 50.000 0.00 0.00 45.18 3.77
2740 2820 2.313643 CCCCCTACCAAACTAATGGGTT 59.686 50.000 0.00 0.00 45.18 4.11
2741 2821 1.927371 CCCCCTACCAAACTAATGGGT 59.073 52.381 0.00 0.00 45.18 4.51
2742 2822 2.748209 CCCCCTACCAAACTAATGGG 57.252 55.000 0.00 0.00 45.18 4.00
2765 2845 2.875094 ATATCATCAGAGGGCCAAGC 57.125 50.000 6.18 0.00 0.00 4.01
2766 2846 9.941325 GATTATATATATCATCAGAGGGCCAAG 57.059 37.037 6.18 0.00 0.00 3.61
2767 2847 9.451206 TGATTATATATATCATCAGAGGGCCAA 57.549 33.333 13.35 0.00 0.00 4.52
2768 2848 9.625438 ATGATTATATATATCATCAGAGGGCCA 57.375 33.333 19.41 1.36 31.91 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.